AutoCloner

Multiple sequence alignment - TraesCS2A01G163400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G163400	chr2A	100.000	4055	0	0	1	4055	115719501	115715447	0.000000e+00	7489.0
1	TraesCS2A01G163400	chr2D	96.155	2809	92	10	828	3624	114523205	114520401	0.000000e+00	4575.0
2	TraesCS2A01G163400	chr2D	93.995	433	15	5	3626	4055	114520283	114519859	0.000000e+00	645.0
3	TraesCS2A01G163400	chr2D	85.432	405	45	13	192	586	114523980	114523580	3.770000e-110	409.0
4	TraesCS2A01G163400	chr2D	85.878	262	21	9	594	843	114523499	114523242	8.640000e-67	265.0
5	TraesCS2A01G163400	chr2D	76.868	281	38	17	585	844	619329745	619329471	2.540000e-27	134.0
6	TraesCS2A01G163400	chr2D	86.111	108	13	2	3429	3535	572791841	572791735	9.210000e-22	115.0
7	TraesCS2A01G163400	chr2D	87.097	62	8	0	137	198	619329779	619329718	2.020000e-08	71.3
8	TraesCS2A01G163400	chr2B	94.291	2855	127	17	594	3420	164907097	164904251	0.000000e+00	4337.0
9	TraesCS2A01G163400	chr2B	90.337	652	24	6	3425	4055	164904159	164903526	0.000000e+00	819.0
10	TraesCS2A01G163400	chr2B	78.941	812	106	25	3260	4055	140142189	140142951	3.640000e-135	492.0
11	TraesCS2A01G163400	chr2B	88.421	190	12	6	12	195	164907290	164907105	1.900000e-53	220.0
12	TraesCS2A01G163400	chr5A	80.759	764	103	27	3299	4055	535493993	535493267	1.270000e-154	556.0
13	TraesCS2A01G163400	chr5A	80.287	766	106	26	3299	4055	680358613	680357884	1.660000e-148	536.0
14	TraesCS2A01G163400	chr7A	80.287	766	106	26	3299	4055	64417667	64418396	1.660000e-148	536.0
15	TraesCS2A01G163400	chr7B	79.474	760	100	26	3302	4055	538121855	538121146	4.710000e-134	488.0
16	TraesCS2A01G163400	chr5B	79.211	760	102	25	3302	4055	382905909	382905200	1.020000e-130	477.0
17	TraesCS2A01G163400	chr5B	78.912	735	99	25	3328	4055	24673735	24673050	7.990000e-122	448.0
18	TraesCS2A01G163400	chr5B	80.660	212	30	6	3327	3535	547542898	547543101	1.950000e-33	154.0
19	TraesCS2A01G163400	chrUn	85.333	225	25	4	3675	3895	42851107	42850887	4.080000e-55	226.0
20	TraesCS2A01G163400	chrUn	85.333	225	25	4	3675	3895	331603464	331603684	4.080000e-55	226.0
21	TraesCS2A01G163400	chrUn	80.435	92	17	1	3920	4011	360906725	360906635	7.270000e-08	69.4
22	TraesCS2A01G163400	chrUn	80.435	92	17	1	3920	4011	361452625	361452535	7.270000e-08	69.4
23	TraesCS2A01G163400	chr3B	80.952	210	33	5	3327	3535	612031508	612031711	4.200000e-35	159.0
24	TraesCS2A01G163400	chr3D	81.053	95	17	1	3917	4011	553047961	553048054	1.560000e-09	75.0
25	TraesCS2A01G163400	chr3D	80.000	95	18	1	3917	4011	553086893	553086986	7.270000e-08	69.4
26	TraesCS2A01G163400	chr5D	100.000	31	0	0	3265	3295	429503344	429503314	1.570000e-04	58.4
27	TraesCS2A01G163400	chr4A	100.000	29	0	0	3265	3293	550171154	550171182	2.000000e-03	54.7
28	TraesCS2A01G163400	chr1D	100.000	29	0	0	3265	3293	206082138	206082110	2.000000e-03	54.7
29	TraesCS2A01G163400	chr1A	96.774	31	1	0	3263	3293	563758035	563758005	7.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G163400	chr2A	115715447	115719501	4054	True	7489.0	7489	100.000000	1	4055	1	chr2A.!!$R1	4054
1	TraesCS2A01G163400	chr2D	114519859	114523980	4121	True	1473.5	4575	90.365000	192	4055	4	chr2D.!!$R2	3863
2	TraesCS2A01G163400	chr2B	164903526	164907290	3764	True	1792.0	4337	91.016333	12	4055	3	chr2B.!!$R1	4043
3	TraesCS2A01G163400	chr2B	140142189	140142951	762	False	492.0	492	78.941000	3260	4055	1	chr2B.!!$F1	795
4	TraesCS2A01G163400	chr5A	535493267	535493993	726	True	556.0	556	80.759000	3299	4055	1	chr5A.!!$R1	756
5	TraesCS2A01G163400	chr5A	680357884	680358613	729	True	536.0	536	80.287000	3299	4055	1	chr5A.!!$R2	756
6	TraesCS2A01G163400	chr7A	64417667	64418396	729	False	536.0	536	80.287000	3299	4055	1	chr7A.!!$F1	756
7	TraesCS2A01G163400	chr7B	538121146	538121855	709	True	488.0	488	79.474000	3302	4055	1	chr7B.!!$R1	753
8	TraesCS2A01G163400	chr5B	382905200	382905909	709	True	477.0	477	79.211000	3302	4055	1	chr5B.!!$R2	753
9	TraesCS2A01G163400	chr5B	24673050	24673735	685	True	448.0	448	78.912000	3328	4055	1	chr5B.!!$R1	727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
988	1145	1.272985	GATCCAATGGGTGGGTTTCCA	60.273	52.381	0.0	0.0	42.72	3.53	F
1985	2142	0.466124	GGGAAGCTAACAGAGGCGAT	59.534	55.000	0.0	0.0	0.00	4.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2139	2296	1.001974	TGCAGCAAGATCGTGTAGGTT	59.998	47.619	10.41	0.0	0.00	3.50	R
3678	4079	1.135083	CCGGCGATAGTCTCAACAGTT	60.135	52.381	9.30	0.0	39.78	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	8.877864	TCCTCTCATTTTGTTACATGGTTAAT	57.122	30.769	0.00	0.00	0.00	1.40
39	40	9.573133	CCTCTCATTTTGTTACATGGTTAATTC	57.427	33.333	0.00	0.00	0.00	2.17
151	158	5.957771	TCTGTAATTTGAGTAGGAGCCAT	57.042	39.130	0.00	0.00	0.00	4.40
276	283	6.267471	TCCTAAAAATCCAGAAACTTGCACAT	59.733	34.615	0.00	0.00	0.00	3.21
282	289	6.932356	ATCCAGAAACTTGCACATATACTG	57.068	37.500	0.00	0.00	0.00	2.74
283	290	6.048732	TCCAGAAACTTGCACATATACTGA	57.951	37.500	0.00	0.00	0.00	3.41
284	291	6.653020	TCCAGAAACTTGCACATATACTGAT	58.347	36.000	0.00	0.00	0.00	2.90
287	297	8.892723	CCAGAAACTTGCACATATACTGATAAA	58.107	33.333	0.00	0.00	0.00	1.40
537	552	9.970395	TCTAAATGGCATCTAATTGCAAAATAG	57.030	29.630	1.71	9.67	44.59	1.73
587	602	9.535878	TTTTCCCTTTTGTGTGTCATTTTATAC	57.464	29.630	0.00	0.00	0.00	1.47
589	604	6.778069	TCCCTTTTGTGTGTCATTTTATACCA	59.222	34.615	0.00	0.00	0.00	3.25
590	605	7.453126	TCCCTTTTGTGTGTCATTTTATACCAT	59.547	33.333	0.00	0.00	0.00	3.55
591	606	8.744652	CCCTTTTGTGTGTCATTTTATACCATA	58.255	33.333	0.00	0.00	0.00	2.74
682	784	8.093927	TGAGCTTAAATAAATTCCCAAACCAAG	58.906	33.333	0.00	0.00	0.00	3.61
708	810	9.821662	GAATTAATATTGTTGGATAGTTACGCC	57.178	33.333	0.00	0.00	0.00	5.68
710	812	8.911918	TTAATATTGTTGGATAGTTACGCCAT	57.088	30.769	0.00	0.00	0.00	4.40
720	822	3.866883	AGTTACGCCATTCCAATTTGG	57.133	42.857	9.28	9.28	39.43	3.28
744	846	6.202762	GGATGACATGGTTTGGAAAAGTTTTC	59.797	38.462	18.30	18.30	0.00	2.29
793	895	9.985730	TTTATTCTGAAAATCAAAGCAACTCAT	57.014	25.926	0.00	0.00	0.00	2.90
794	896	9.985730	TTATTCTGAAAATCAAAGCAACTCATT	57.014	25.926	0.00	0.00	0.00	2.57
795	897	7.935338	TTCTGAAAATCAAAGCAACTCATTC	57.065	32.000	0.00	0.00	0.00	2.67
859	1014	7.703058	AATCTTTTGGGATGTTACACTTAGG	57.297	36.000	0.00	0.00	0.00	2.69
863	1018	6.636454	TTTGGGATGTTACACTTAGGATCT	57.364	37.500	0.00	0.00	0.00	2.75
872	1028	9.739276	ATGTTACACTTAGGATCTGAATTTGAA	57.261	29.630	0.00	0.00	0.00	2.69
875	1031	7.693969	ACACTTAGGATCTGAATTTGAAAGG	57.306	36.000	0.00	0.00	0.00	3.11
880	1036	4.044571	AGGATCTGAATTTGAAAGGGTGGA	59.955	41.667	0.00	0.00	0.00	4.02
942	1098	2.863704	GCGTGTCCACTTAACCTAACGT	60.864	50.000	0.00	0.00	32.66	3.99
970	1126	7.054751	GGGCCTAGTAAGTGAAAAATAGTGAT	58.945	38.462	0.84	0.00	0.00	3.06
973	1129	7.769044	GCCTAGTAAGTGAAAAATAGTGATCCA	59.231	37.037	0.00	0.00	0.00	3.41
988	1145	1.272985	GATCCAATGGGTGGGTTTCCA	60.273	52.381	0.00	0.00	42.72	3.53
998	1155	3.666253	GGTTTCCACGCAACCGGG	61.666	66.667	6.32	0.00	39.22	5.73
999	1156	2.903350	GTTTCCACGCAACCGGGT	60.903	61.111	6.32	0.00	35.69	5.28
1000	1157	1.597578	GTTTCCACGCAACCGGGTA	60.598	57.895	6.32	0.00	35.69	3.69
1001	1158	0.956902	GTTTCCACGCAACCGGGTAT	60.957	55.000	6.32	0.00	35.69	2.73
1004	1161	3.505184	CACGCAACCGGGTATGGC	61.505	66.667	6.32	4.12	36.36	4.40
1087	1244	1.749638	GACCTCTCTCGCCTCCGAA	60.750	63.158	0.00	0.00	43.87	4.30
1088	1245	1.720694	GACCTCTCTCGCCTCCGAAG	61.721	65.000	0.00	0.00	43.87	3.79
1293	1450	0.725133	TTGAATCCCTCCCCTCCTCT	59.275	55.000	0.00	0.00	0.00	3.69
1389	1546	4.329545	GACCAGTTGCCCAGCCGA	62.330	66.667	0.00	0.00	0.00	5.54
1406	1563	3.459378	GATTCGCCGTCTCGCCGTA	62.459	63.158	0.00	0.00	0.00	4.02
1485	1642	4.554363	CTCACGCTCTACCGCCGG	62.554	72.222	0.00	0.00	0.00	6.13
1521	1678	1.000896	CATCCCACCCACCACCTTC	60.001	63.158	0.00	0.00	0.00	3.46
1650	1807	1.323271	ATCAGACGGTCATCCACGCT	61.323	55.000	11.27	0.00	0.00	5.07
1821	1978	3.972638	ACAGGATGATGATAAGAGGCTGT	59.027	43.478	0.00	0.00	39.69	4.40
1953	2110	0.956410	TTAACACGGTGATTGGCGGG	60.956	55.000	16.29	0.00	0.00	6.13
1985	2142	0.466124	GGGAAGCTAACAGAGGCGAT	59.534	55.000	0.00	0.00	0.00	4.58
2134	2291	2.738587	TAAGGGTTGTGCTCCAAACA	57.261	45.000	6.98	0.00	42.91	2.83
2139	2296	3.329520	AGGGTTGTGCTCCAAACATAGTA	59.670	43.478	6.98	0.00	42.91	1.82
2162	2319	1.596260	CTACACGATCTTGCTGCATGG	59.404	52.381	14.55	6.28	0.00	3.66
2202	2359	1.629861	TGGGATGACATGAGAGCAACA	59.370	47.619	0.00	0.00	0.00	3.33
2240	2397	4.562143	GGCAAATGGCTTGAGTCTGAATTT	60.562	41.667	0.00	0.00	44.01	1.82
2241	2398	4.387862	GCAAATGGCTTGAGTCTGAATTTG	59.612	41.667	0.00	0.00	40.25	2.32
2352	2509	1.065272	TGCAAGCCTGATATCTGCACA	60.065	47.619	11.39	7.81	0.00	4.57
2604	2761	2.094390	CCTGTGCAAAGATGGGAATGTG	60.094	50.000	5.12	0.00	0.00	3.21
2756	2913	4.640647	GGAGATGTTAAACCAAGGGCTTAG	59.359	45.833	0.00	0.00	0.00	2.18
3058	3215	4.526650	ACGAGGTTGAAGGGCATTAATTTT	59.473	37.500	0.00	0.00	0.00	1.82
3067	3224	6.206438	TGAAGGGCATTAATTTTCTTTTTGCC	59.794	34.615	2.48	2.48	45.73	4.52
3102	3259	1.963515	GGTTGTCATGGCTTTTGGAGT	59.036	47.619	0.00	0.00	0.00	3.85
3107	3264	4.469657	TGTCATGGCTTTTGGAGTTTACT	58.530	39.130	0.00	0.00	0.00	2.24
3168	3325	5.589855	TCATGGTGTCCATCATAATGTTCAC	59.410	40.000	0.00	0.00	43.15	3.18
3244	3401	2.378038	TCCATTGGCCTTTAGCATCAC	58.622	47.619	3.32	0.00	46.50	3.06
3368	3547	9.317936	CATATGGCGATATGTAATCTTATGTGT	57.682	33.333	17.85	0.00	37.65	3.72
3402	3581	1.127951	GTACATTGCACGTACACTGCC	59.872	52.381	16.97	0.00	39.24	4.85
3484	3751	1.210931	CGCCACCAGCATTCACAAG	59.789	57.895	0.00	0.00	44.04	3.16
3590	3873	5.354513	GGGCATATCAGATCATCACAATGAG	59.645	44.000	0.00	0.00	44.90	2.90
3602	3886	6.845302	TCATCACAATGAGCAAAAGATGTAC	58.155	36.000	0.00	0.00	36.98	2.90
3731	4133	2.292257	ACACCACCTCCATAGCTCAGTA	60.292	50.000	0.00	0.00	0.00	2.74
3839	4241	3.953612	TGTTGGTTCTGATCAAAAGCAGT	59.046	39.130	12.98	0.00	39.93	4.40
3881	4283	7.054491	TGTGAGCTCAAATACATGCTATAGA	57.946	36.000	20.19	0.00	35.76	1.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	9.347240	CCATGTAACAAAATGAGAGGAGATAAT	57.653	33.333	0.00	0.00	0.00	1.28
7	8	8.328758	ACCATGTAACAAAATGAGAGGAGATAA	58.671	33.333	0.00	0.00	0.00	1.75
8	9	7.861629	ACCATGTAACAAAATGAGAGGAGATA	58.138	34.615	0.00	0.00	0.00	1.98
9	10	6.725364	ACCATGTAACAAAATGAGAGGAGAT	58.275	36.000	0.00	0.00	0.00	2.75
10	11	6.126863	ACCATGTAACAAAATGAGAGGAGA	57.873	37.500	0.00	0.00	0.00	3.71
126	133	6.539173	TGGCTCCTACTCAAATTACAGAAAA	58.461	36.000	0.00	0.00	0.00	2.29
128	135	5.755409	TGGCTCCTACTCAAATTACAGAA	57.245	39.130	0.00	0.00	0.00	3.02
141	148	8.523658	GGATTTTAAATTGGATATGGCTCCTAC	58.476	37.037	0.00	0.00	36.20	3.18
252	259	5.841810	TGTGCAAGTTTCTGGATTTTTAGG	58.158	37.500	0.00	0.00	0.00	2.69
326	336	9.489084	GCATCCTTGAAAGGTTTTAAAAACTAT	57.511	29.630	18.59	4.33	46.54	2.12
327	337	8.700973	AGCATCCTTGAAAGGTTTTAAAAACTA	58.299	29.630	18.59	0.82	46.54	2.24
328	338	7.564793	AGCATCCTTGAAAGGTTTTAAAAACT	58.435	30.769	12.83	12.83	46.54	2.66
329	339	7.786178	AGCATCCTTGAAAGGTTTTAAAAAC	57.214	32.000	7.96	7.96	46.54	2.43
336	346	9.875691	GAAATTTATAGCATCCTTGAAAGGTTT	57.124	29.630	8.91	0.00	46.54	3.27
511	523	9.970395	CTATTTTGCAATTAGATGCCATTTAGA	57.030	29.630	0.00	0.00	45.83	2.10
512	524	9.754382	ACTATTTTGCAATTAGATGCCATTTAG	57.246	29.630	18.69	3.02	45.83	1.85
527	542	9.995003	AATGGAGTTTATTTGACTATTTTGCAA	57.005	25.926	0.00	0.00	0.00	4.08
563	578	7.287927	TGGTATAAAATGACACACAAAAGGGAA	59.712	33.333	0.00	0.00	0.00	3.97
672	774	8.317679	TCCAACAATATTAATTCTTGGTTTGGG	58.682	33.333	19.51	11.26	40.30	4.12
682	784	9.821662	GGCGTAACTATCCAACAATATTAATTC	57.178	33.333	0.00	0.00	0.00	2.17
690	792	4.578928	GGAATGGCGTAACTATCCAACAAT	59.421	41.667	0.00	0.00	33.04	2.71
691	793	3.942748	GGAATGGCGTAACTATCCAACAA	59.057	43.478	0.00	0.00	33.04	2.83
692	794	3.055021	TGGAATGGCGTAACTATCCAACA	60.055	43.478	0.00	0.00	33.04	3.33
693	795	3.537580	TGGAATGGCGTAACTATCCAAC	58.462	45.455	0.00	0.00	33.04	3.77
697	799	5.298276	TCCAAATTGGAATGGCGTAACTATC	59.702	40.000	13.04	0.00	45.00	2.08
698	800	5.197451	TCCAAATTGGAATGGCGTAACTAT	58.803	37.500	13.04	0.00	45.00	2.12
699	801	4.590918	TCCAAATTGGAATGGCGTAACTA	58.409	39.130	13.04	0.00	45.00	2.24
720	822	6.760770	TGAAAACTTTTCCAAACCATGTCATC	59.239	34.615	11.03	0.00	0.00	2.92
723	825	5.293324	GGTGAAAACTTTTCCAAACCATGTC	59.707	40.000	11.03	0.00	0.00	3.06
770	872	8.145767	TGAATGAGTTGCTTTGATTTTCAGAAT	58.854	29.630	0.00	0.00	0.00	2.40
859	1014	4.142600	CGTCCACCCTTTCAAATTCAGATC	60.143	45.833	0.00	0.00	0.00	2.75
863	1018	2.235016	CCGTCCACCCTTTCAAATTCA	58.765	47.619	0.00	0.00	0.00	2.57
891	1047	4.025401	CGCTTTCGGTGTGCCCAC	62.025	66.667	0.00	0.00	41.06	4.61
942	1098	4.986054	TTTTTCACTTACTAGGCCCAGA	57.014	40.909	4.75	0.00	0.00	3.86
1406	1563	0.319297	GGTGTTGTACGAGCGGAAGT	60.319	55.000	0.00	0.00	0.00	3.01
1471	1628	3.900892	CATCCGGCGGTAGAGCGT	61.901	66.667	27.32	1.55	38.18	5.07
1509	1666	1.844130	GAAGGTGAAGGTGGTGGGT	59.156	57.895	0.00	0.00	0.00	4.51
1611	1768	2.512286	AGCATCACATCGGGCACG	60.512	61.111	0.00	0.00	42.74	5.34
1624	1781	2.560542	GGATGACCGTCTGATAGAGCAT	59.439	50.000	0.00	0.00	0.00	3.79
1650	1807	2.447572	TCACCCTGGGCACACAGA	60.448	61.111	14.08	0.00	40.97	3.41
1914	2071	8.373048	TGTTAAATAACACGACATTCAACTCT	57.627	30.769	1.96	0.00	40.93	3.24
1953	2110	2.519013	AGCTTCCCATCCAAAAGACAC	58.481	47.619	0.00	0.00	0.00	3.67
1985	2142	4.492646	TCCCATTATCTCATACAGCTCCA	58.507	43.478	0.00	0.00	0.00	3.86
2134	2291	5.736492	GCAGCAAGATCGTGTAGGTTACTAT	60.736	44.000	10.41	0.00	0.00	2.12
2139	2296	1.001974	TGCAGCAAGATCGTGTAGGTT	59.998	47.619	10.41	0.00	0.00	3.50
2162	2319	2.481185	CACATGCCATTCCTGCAAAAAC	59.519	45.455	0.00	0.00	42.92	2.43
2202	2359	4.021192	CCATTTGCCAACATTACCTTCAGT	60.021	41.667	0.00	0.00	0.00	3.41
2240	2397	6.795144	AAATCATTCCATTGTATCCTTGCA	57.205	33.333	0.00	0.00	0.00	4.08
2241	2398	7.330208	GCATAAATCATTCCATTGTATCCTTGC	59.670	37.037	0.00	0.00	0.00	4.01
2604	2761	1.718757	GCAACACCATGCTCCGATCC	61.719	60.000	0.00	0.00	43.06	3.36
3058	3215	4.382291	ACATACAGTACACGGCAAAAAGA	58.618	39.130	0.00	0.00	0.00	2.52
3067	3224	4.052608	TGACAACCAACATACAGTACACG	58.947	43.478	0.00	0.00	0.00	4.49
3244	3401	8.161699	ACTAGTGGTACAACAAAATAACCAAG	57.838	34.615	2.54	0.00	44.16	3.61
3347	3526	5.408299	TGCACACATAAGATTACATATCGCC	59.592	40.000	0.00	0.00	0.00	5.54
3354	3533	7.686438	AAATCACTGCACACATAAGATTACA	57.314	32.000	0.00	0.00	0.00	2.41
3484	3751	5.411669	ACGGGTGTTCATTAAGATTCTTGAC	59.588	40.000	9.22	1.63	0.00	3.18
3590	3873	8.718102	TTCTACCTTATCTGTACATCTTTTGC	57.282	34.615	0.00	0.00	0.00	3.68
3671	4072	6.200475	GGCGATAGTCTCAACAGTTAAATACC	59.800	42.308	0.00	0.00	38.04	2.73
3672	4073	6.074994	CGGCGATAGTCTCAACAGTTAAATAC	60.075	42.308	0.00	0.00	39.78	1.89
3673	4074	5.975344	CGGCGATAGTCTCAACAGTTAAATA	59.025	40.000	0.00	0.00	39.78	1.40
3674	4075	4.804139	CGGCGATAGTCTCAACAGTTAAAT	59.196	41.667	0.00	0.00	39.78	1.40
3675	4076	4.171005	CGGCGATAGTCTCAACAGTTAAA	58.829	43.478	0.00	0.00	39.78	1.52
3676	4077	3.428452	CCGGCGATAGTCTCAACAGTTAA	60.428	47.826	9.30	0.00	39.78	2.01
3677	4078	2.098607	CCGGCGATAGTCTCAACAGTTA	59.901	50.000	9.30	0.00	39.78	2.24
3678	4079	1.135083	CCGGCGATAGTCTCAACAGTT	60.135	52.381	9.30	0.00	39.78	3.16
3731	4133	2.419297	GCAGATCGGTGTCAAGGAGAAT	60.419	50.000	0.00	0.00	0.00	2.40
3905	4307	8.426881	TGTGCACGCTTAATATATTCTTTGTA	57.573	30.769	13.13	0.00	0.00	2.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.