Multiple sequence alignment - TraesCS2A01G162700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G162700 chr2A 100.000 3416 0 0 895 4310 115122558 115119143 0.000000e+00 6309.0
1 TraesCS2A01G162700 chr2A 100.000 420 0 0 1 420 115123452 115123033 0.000000e+00 776.0
2 TraesCS2A01G162700 chr2D 94.239 3489 110 23 895 4310 113505770 113502300 0.000000e+00 5245.0
3 TraesCS2A01G162700 chr2D 94.915 59 3 0 3200 3258 113503382 113503324 4.590000e-15 93.5
4 TraesCS2A01G162700 chr2B 91.631 1852 98 34 2477 4310 164089662 164087850 0.000000e+00 2508.0
5 TraesCS2A01G162700 chr2B 91.937 1017 69 7 895 1908 164091172 164090166 0.000000e+00 1411.0
6 TraesCS2A01G162700 chr2B 88.387 465 17 6 1938 2367 164090170 164089708 3.820000e-145 525.0
7 TraesCS2A01G162700 chr2B 100.000 36 0 0 2416 2451 164089703 164089668 2.780000e-07 67.6
8 TraesCS2A01G162700 chr7A 95.440 307 13 1 1 306 458131226 458131532 5.010000e-134 488.0
9 TraesCS2A01G162700 chr1A 92.182 307 20 4 2 306 403630960 403631264 8.560000e-117 431.0
10 TraesCS2A01G162700 chr4B 89.103 156 13 3 1385 1539 510827662 510827814 1.580000e-44 191.0
11 TraesCS2A01G162700 chr1B 89.404 151 10 4 1383 1531 632020927 632021073 7.360000e-43 185.0
12 TraesCS2A01G162700 chrUn 86.826 167 18 3 1379 1543 126680474 126680638 2.650000e-42 183.0
13 TraesCS2A01G162700 chrUn 86.503 163 19 2 1385 1546 81694230 81694070 4.430000e-40 176.0
14 TraesCS2A01G162700 chr3D 88.312 154 16 2 1376 1528 288550451 288550603 2.650000e-42 183.0
15 TraesCS2A01G162700 chr6D 87.898 157 16 3 1383 1537 303060007 303059852 9.520000e-42 182.0
16 TraesCS2A01G162700 chr4A 86.145 166 19 3 1383 1546 598724455 598724618 4.430000e-40 176.0
17 TraesCS2A01G162700 chr3B 87.671 146 13 3 1 144 736683166 736683308 9.590000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G162700 chr2A 115119143 115123452 4309 True 3542.50 6309 100.00000 1 4310 2 chr2A.!!$R1 4309
1 TraesCS2A01G162700 chr2D 113502300 113505770 3470 True 2669.25 5245 94.57700 895 4310 2 chr2D.!!$R1 3415
2 TraesCS2A01G162700 chr2B 164087850 164091172 3322 True 1127.90 2508 92.98875 895 4310 4 chr2B.!!$R1 3415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.102120 CAGGAGAAGTAGCTGCGGAG 59.898 60.0 0.00 0.00 0.00 4.63 F
334 335 0.107831 AAGCCGTTCTGTTAGCCACA 59.892 50.0 0.00 0.00 0.00 4.17 F
335 336 0.107831 AGCCGTTCTGTTAGCCACAA 59.892 50.0 0.00 0.00 33.87 3.33 F
379 380 0.325296 TAACAGAGGCAGGATCGGGT 60.325 55.0 0.00 0.00 0.00 5.28 F
390 391 0.602905 GGATCGGGTCGGCCTTTATG 60.603 60.0 5.77 0.00 34.45 1.90 F
1963 1983 0.745845 AAGAAGTGGGCATGCGCTAG 60.746 55.0 31.56 1.38 38.60 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1068 1069 0.169672 CGCCAGTCCTGCAGAAAATG 59.830 55.000 17.39 12.14 0.00 2.32 R
1541 1544 0.813184 CAAGACATCGGCATTGGCTT 59.187 50.000 8.71 0.00 43.25 4.35 R
2184 2221 2.544486 GCCCTTTCTGACTGCAAAGTTG 60.544 50.000 0.00 0.00 0.00 3.16 R
2409 2464 2.381911 CCAAACCAGATAAGCAGGCAT 58.618 47.619 0.00 0.00 0.00 4.40 R
2413 2468 4.272489 TGAATCCCAAACCAGATAAGCAG 58.728 43.478 0.00 0.00 0.00 4.24 R
3439 3572 0.183492 AAGCAACTGAACAGCCTCCA 59.817 50.000 1.46 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.115270 GTCCAGGTCGTCCTCCTT 57.885 61.111 0.00 0.00 43.07 3.36
18 19 1.891616 GTCCAGGTCGTCCTCCTTC 59.108 63.158 0.00 0.00 43.07 3.46
19 20 0.898789 GTCCAGGTCGTCCTCCTTCA 60.899 60.000 0.00 0.00 43.07 3.02
20 21 0.612174 TCCAGGTCGTCCTCCTTCAG 60.612 60.000 0.00 0.00 43.07 3.02
21 22 1.216710 CAGGTCGTCCTCCTTCAGC 59.783 63.158 0.00 0.00 43.07 4.26
22 23 1.985116 AGGTCGTCCTCCTTCAGCC 60.985 63.158 0.00 0.00 40.58 4.85
23 24 2.579738 GTCGTCCTCCTTCAGCCC 59.420 66.667 0.00 0.00 0.00 5.19
24 25 1.985116 GTCGTCCTCCTTCAGCCCT 60.985 63.158 0.00 0.00 0.00 5.19
25 26 0.683504 GTCGTCCTCCTTCAGCCCTA 60.684 60.000 0.00 0.00 0.00 3.53
26 27 0.395862 TCGTCCTCCTTCAGCCCTAG 60.396 60.000 0.00 0.00 0.00 3.02
27 28 1.826709 GTCCTCCTTCAGCCCTAGC 59.173 63.158 0.00 0.00 40.32 3.42
39 40 2.470983 GCCCTAGCTCTTCCATCATC 57.529 55.000 0.00 0.00 35.50 2.92
40 41 1.003003 GCCCTAGCTCTTCCATCATCC 59.997 57.143 0.00 0.00 35.50 3.51
41 42 2.618794 CCCTAGCTCTTCCATCATCCT 58.381 52.381 0.00 0.00 0.00 3.24
42 43 2.978278 CCCTAGCTCTTCCATCATCCTT 59.022 50.000 0.00 0.00 0.00 3.36
43 44 3.244491 CCCTAGCTCTTCCATCATCCTTG 60.244 52.174 0.00 0.00 0.00 3.61
44 45 2.345124 AGCTCTTCCATCATCCTTGC 57.655 50.000 0.00 0.00 0.00 4.01
45 46 0.942962 GCTCTTCCATCATCCTTGCG 59.057 55.000 0.00 0.00 0.00 4.85
46 47 1.473965 GCTCTTCCATCATCCTTGCGA 60.474 52.381 0.00 0.00 0.00 5.10
47 48 2.208431 CTCTTCCATCATCCTTGCGAC 58.792 52.381 0.00 0.00 0.00 5.19
48 49 0.933097 CTTCCATCATCCTTGCGACG 59.067 55.000 0.00 0.00 0.00 5.12
49 50 0.249120 TTCCATCATCCTTGCGACGT 59.751 50.000 0.00 0.00 0.00 4.34
50 51 0.179111 TCCATCATCCTTGCGACGTC 60.179 55.000 5.18 5.18 0.00 4.34
51 52 1.482621 CCATCATCCTTGCGACGTCG 61.483 60.000 32.57 32.57 43.27 5.12
61 62 3.518998 CGACGTCGCTGATCCCCT 61.519 66.667 26.59 0.00 0.00 4.79
62 63 2.413765 GACGTCGCTGATCCCCTC 59.586 66.667 0.00 0.00 0.00 4.30
63 64 3.140225 GACGTCGCTGATCCCCTCC 62.140 68.421 0.00 0.00 0.00 4.30
64 65 4.271816 CGTCGCTGATCCCCTCCG 62.272 72.222 0.00 0.00 0.00 4.63
65 66 3.148279 GTCGCTGATCCCCTCCGT 61.148 66.667 0.00 0.00 0.00 4.69
66 67 1.826921 GTCGCTGATCCCCTCCGTA 60.827 63.158 0.00 0.00 0.00 4.02
67 68 1.076559 TCGCTGATCCCCTCCGTAA 60.077 57.895 0.00 0.00 0.00 3.18
68 69 1.107538 TCGCTGATCCCCTCCGTAAG 61.108 60.000 0.00 0.00 0.00 2.34
69 70 1.069935 GCTGATCCCCTCCGTAAGC 59.930 63.158 0.00 0.00 0.00 3.09
70 71 1.364171 CTGATCCCCTCCGTAAGCG 59.636 63.158 0.00 0.00 37.95 4.68
82 83 2.057503 CGTAAGCGGAGATCCATCTG 57.942 55.000 0.00 0.00 37.25 2.90
85 86 2.356793 GCGGAGATCCATCTGCCG 60.357 66.667 16.73 16.73 44.35 5.69
86 87 2.356793 CGGAGATCCATCTGCCGC 60.357 66.667 11.85 0.00 41.58 6.53
87 88 2.031768 GGAGATCCATCTGCCGCC 59.968 66.667 0.00 0.00 39.08 6.13
88 89 2.811514 GGAGATCCATCTGCCGCCA 61.812 63.158 0.00 0.00 39.08 5.69
89 90 1.374190 GAGATCCATCTGCCGCCAT 59.626 57.895 0.00 0.00 37.25 4.40
90 91 0.954449 GAGATCCATCTGCCGCCATG 60.954 60.000 0.00 0.00 37.25 3.66
91 92 1.228063 GATCCATCTGCCGCCATGT 60.228 57.895 0.00 0.00 0.00 3.21
92 93 1.228063 ATCCATCTGCCGCCATGTC 60.228 57.895 0.00 0.00 0.00 3.06
93 94 3.274586 CCATCTGCCGCCATGTCG 61.275 66.667 0.00 0.00 0.00 4.35
94 95 2.202919 CATCTGCCGCCATGTCGA 60.203 61.111 0.00 0.00 0.00 4.20
95 96 1.815003 CATCTGCCGCCATGTCGAA 60.815 57.895 0.00 0.00 0.00 3.71
96 97 1.078497 ATCTGCCGCCATGTCGAAA 60.078 52.632 0.00 0.00 0.00 3.46
97 98 1.369091 ATCTGCCGCCATGTCGAAAC 61.369 55.000 0.00 0.00 0.00 2.78
98 99 3.039202 CTGCCGCCATGTCGAAACC 62.039 63.158 0.00 0.00 0.00 3.27
99 100 3.810896 GCCGCCATGTCGAAACCC 61.811 66.667 0.00 0.00 0.00 4.11
100 101 2.046314 CCGCCATGTCGAAACCCT 60.046 61.111 0.00 0.00 0.00 4.34
101 102 1.219664 CCGCCATGTCGAAACCCTA 59.780 57.895 0.00 0.00 0.00 3.53
102 103 0.391927 CCGCCATGTCGAAACCCTAA 60.392 55.000 0.00 0.00 0.00 2.69
103 104 0.725117 CGCCATGTCGAAACCCTAAC 59.275 55.000 0.00 0.00 0.00 2.34
104 105 1.092348 GCCATGTCGAAACCCTAACC 58.908 55.000 0.00 0.00 0.00 2.85
105 106 1.746470 CCATGTCGAAACCCTAACCC 58.254 55.000 0.00 0.00 0.00 4.11
106 107 1.365699 CATGTCGAAACCCTAACCCG 58.634 55.000 0.00 0.00 0.00 5.28
107 108 1.066716 CATGTCGAAACCCTAACCCGA 60.067 52.381 0.00 0.00 0.00 5.14
108 109 0.604578 TGTCGAAACCCTAACCCGAG 59.395 55.000 0.00 0.00 0.00 4.63
109 110 0.605083 GTCGAAACCCTAACCCGAGT 59.395 55.000 0.00 0.00 0.00 4.18
110 111 1.001293 GTCGAAACCCTAACCCGAGTT 59.999 52.381 0.00 0.00 40.15 3.01
111 112 1.693606 TCGAAACCCTAACCCGAGTTT 59.306 47.619 0.00 0.00 37.42 2.66
112 113 2.896685 TCGAAACCCTAACCCGAGTTTA 59.103 45.455 0.00 0.00 37.42 2.01
113 114 3.323403 TCGAAACCCTAACCCGAGTTTAA 59.677 43.478 0.00 0.00 37.42 1.52
114 115 4.064388 CGAAACCCTAACCCGAGTTTAAA 58.936 43.478 0.00 0.00 37.42 1.52
115 116 4.152938 CGAAACCCTAACCCGAGTTTAAAG 59.847 45.833 0.00 0.00 37.42 1.85
116 117 4.980339 AACCCTAACCCGAGTTTAAAGA 57.020 40.909 0.00 0.00 37.42 2.52
117 118 5.509832 AACCCTAACCCGAGTTTAAAGAT 57.490 39.130 0.00 0.00 37.42 2.40
118 119 5.095145 ACCCTAACCCGAGTTTAAAGATC 57.905 43.478 0.00 0.00 37.42 2.75
119 120 4.117685 CCCTAACCCGAGTTTAAAGATCG 58.882 47.826 13.33 13.33 37.42 3.69
127 128 5.204673 CGAGTTTAAAGATCGGGTTTCTG 57.795 43.478 12.71 0.00 32.93 3.02
128 129 4.435651 CGAGTTTAAAGATCGGGTTTCTGC 60.436 45.833 12.71 0.00 32.93 4.26
129 130 4.394729 AGTTTAAAGATCGGGTTTCTGCA 58.605 39.130 0.00 0.00 0.00 4.41
130 131 4.455877 AGTTTAAAGATCGGGTTTCTGCAG 59.544 41.667 7.63 7.63 0.00 4.41
131 132 2.568623 AAAGATCGGGTTTCTGCAGT 57.431 45.000 14.67 0.00 0.00 4.40
132 133 2.100605 AAGATCGGGTTTCTGCAGTC 57.899 50.000 14.67 5.73 0.00 3.51
133 134 0.108615 AGATCGGGTTTCTGCAGTCG 60.109 55.000 14.67 10.99 0.00 4.18
134 135 1.696832 GATCGGGTTTCTGCAGTCGC 61.697 60.000 14.67 12.35 39.24 5.19
135 136 3.423154 CGGGTTTCTGCAGTCGCC 61.423 66.667 14.67 13.32 37.32 5.54
136 137 3.056328 GGGTTTCTGCAGTCGCCC 61.056 66.667 20.26 20.26 37.32 6.13
137 138 2.032681 GGTTTCTGCAGTCGCCCT 59.967 61.111 14.67 0.00 37.32 5.19
138 139 1.295423 GGTTTCTGCAGTCGCCCTA 59.705 57.895 14.67 0.00 37.32 3.53
139 140 0.107654 GGTTTCTGCAGTCGCCCTAT 60.108 55.000 14.67 0.00 37.32 2.57
140 141 1.009829 GTTTCTGCAGTCGCCCTATG 58.990 55.000 14.67 0.00 37.32 2.23
141 142 0.744414 TTTCTGCAGTCGCCCTATGC 60.744 55.000 14.67 0.00 40.40 3.14
142 143 2.590007 CTGCAGTCGCCCTATGCC 60.590 66.667 5.25 0.00 39.22 4.40
143 144 4.175337 TGCAGTCGCCCTATGCCC 62.175 66.667 0.00 0.00 39.22 5.36
144 145 4.937431 GCAGTCGCCCTATGCCCC 62.937 72.222 0.00 0.00 36.24 5.80
145 146 4.256180 CAGTCGCCCTATGCCCCC 62.256 72.222 0.00 0.00 36.24 5.40
148 149 4.954118 TCGCCCTATGCCCCCGAT 62.954 66.667 0.00 0.00 36.24 4.18
149 150 4.394712 CGCCCTATGCCCCCGATC 62.395 72.222 0.00 0.00 36.24 3.69
150 151 4.035102 GCCCTATGCCCCCGATCC 62.035 72.222 0.00 0.00 0.00 3.36
151 152 2.203998 CCCTATGCCCCCGATCCT 60.204 66.667 0.00 0.00 0.00 3.24
152 153 2.294078 CCCTATGCCCCCGATCCTC 61.294 68.421 0.00 0.00 0.00 3.71
153 154 1.229336 CCTATGCCCCCGATCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
154 155 1.548357 CCTATGCCCCCGATCCTCTG 61.548 65.000 0.00 0.00 0.00 3.35
155 156 0.542938 CTATGCCCCCGATCCTCTGA 60.543 60.000 0.00 0.00 0.00 3.27
156 157 0.105194 TATGCCCCCGATCCTCTGAA 60.105 55.000 0.00 0.00 0.00 3.02
157 158 0.988145 ATGCCCCCGATCCTCTGAAA 60.988 55.000 0.00 0.00 0.00 2.69
158 159 1.204786 TGCCCCCGATCCTCTGAAAA 61.205 55.000 0.00 0.00 0.00 2.29
159 160 0.748367 GCCCCCGATCCTCTGAAAAC 60.748 60.000 0.00 0.00 0.00 2.43
160 161 0.618458 CCCCCGATCCTCTGAAAACA 59.382 55.000 0.00 0.00 0.00 2.83
161 162 1.407437 CCCCCGATCCTCTGAAAACAG 60.407 57.143 0.00 0.00 0.00 3.16
162 163 1.373570 CCCGATCCTCTGAAAACAGC 58.626 55.000 0.00 0.00 0.00 4.40
163 164 1.373570 CCGATCCTCTGAAAACAGCC 58.626 55.000 0.00 0.00 0.00 4.85
164 165 1.339055 CCGATCCTCTGAAAACAGCCA 60.339 52.381 0.00 0.00 0.00 4.75
165 166 2.426522 CGATCCTCTGAAAACAGCCAA 58.573 47.619 0.00 0.00 0.00 4.52
166 167 2.417933 CGATCCTCTGAAAACAGCCAAG 59.582 50.000 0.00 0.00 0.00 3.61
167 168 2.276732 TCCTCTGAAAACAGCCAAGG 57.723 50.000 0.00 0.00 0.00 3.61
168 169 0.600057 CCTCTGAAAACAGCCAAGGC 59.400 55.000 2.02 2.02 42.33 4.35
169 170 0.600057 CTCTGAAAACAGCCAAGGCC 59.400 55.000 7.62 0.00 43.17 5.19
170 171 0.827507 TCTGAAAACAGCCAAGGCCC 60.828 55.000 7.62 0.00 43.17 5.80
171 172 0.829182 CTGAAAACAGCCAAGGCCCT 60.829 55.000 7.62 0.00 43.17 5.19
172 173 0.827507 TGAAAACAGCCAAGGCCCTC 60.828 55.000 7.62 0.00 43.17 4.30
173 174 1.866853 GAAAACAGCCAAGGCCCTCG 61.867 60.000 7.62 0.00 43.17 4.63
174 175 3.868200 AAACAGCCAAGGCCCTCGG 62.868 63.158 7.62 0.00 43.17 4.63
187 188 4.135153 CTCGGCCAGGAGACACCG 62.135 72.222 2.24 0.00 44.74 4.94
188 189 4.671590 TCGGCCAGGAGACACCGA 62.672 66.667 2.24 1.22 46.08 4.69
189 190 4.135153 CGGCCAGGAGACACCGAG 62.135 72.222 2.24 0.00 43.64 4.63
190 191 2.680352 GGCCAGGAGACACCGAGA 60.680 66.667 0.00 0.00 44.74 4.04
191 192 2.716017 GGCCAGGAGACACCGAGAG 61.716 68.421 0.00 0.00 44.74 3.20
213 214 4.689549 TCCCGCGGTCCAGGAGAA 62.690 66.667 26.12 0.00 0.00 2.87
214 215 4.148825 CCCGCGGTCCAGGAGAAG 62.149 72.222 26.12 0.00 0.00 2.85
215 216 3.382832 CCGCGGTCCAGGAGAAGT 61.383 66.667 19.50 0.00 0.00 3.01
216 217 2.050350 CCGCGGTCCAGGAGAAGTA 61.050 63.158 19.50 0.00 0.00 2.24
217 218 1.433879 CGCGGTCCAGGAGAAGTAG 59.566 63.158 0.00 0.00 0.00 2.57
218 219 1.142097 GCGGTCCAGGAGAAGTAGC 59.858 63.158 0.00 0.00 0.00 3.58
219 220 1.324005 GCGGTCCAGGAGAAGTAGCT 61.324 60.000 0.00 0.00 0.00 3.32
220 221 0.457851 CGGTCCAGGAGAAGTAGCTG 59.542 60.000 0.00 0.00 0.00 4.24
221 222 0.176910 GGTCCAGGAGAAGTAGCTGC 59.823 60.000 0.00 0.00 0.00 5.25
222 223 0.179124 GTCCAGGAGAAGTAGCTGCG 60.179 60.000 0.00 0.00 0.00 5.18
223 224 1.142748 CCAGGAGAAGTAGCTGCGG 59.857 63.158 0.00 0.00 0.00 5.69
224 225 1.323271 CCAGGAGAAGTAGCTGCGGA 61.323 60.000 0.00 0.00 0.00 5.54
225 226 0.102120 CAGGAGAAGTAGCTGCGGAG 59.898 60.000 0.00 0.00 0.00 4.63
226 227 1.040339 AGGAGAAGTAGCTGCGGAGG 61.040 60.000 5.93 0.00 0.00 4.30
227 228 1.439644 GAGAAGTAGCTGCGGAGGG 59.560 63.158 5.93 0.00 0.00 4.30
228 229 2.022240 GAGAAGTAGCTGCGGAGGGG 62.022 65.000 5.93 0.00 0.00 4.79
229 230 2.284699 AAGTAGCTGCGGAGGGGT 60.285 61.111 5.93 0.00 0.00 4.95
230 231 2.299503 GAAGTAGCTGCGGAGGGGTC 62.300 65.000 5.93 0.00 0.00 4.46
231 232 4.208686 GTAGCTGCGGAGGGGTCG 62.209 72.222 5.93 0.00 0.00 4.79
248 249 4.483243 GCGGGCGGGGAAGATCAA 62.483 66.667 0.00 0.00 0.00 2.57
249 250 2.270850 CGGGCGGGGAAGATCAAA 59.729 61.111 0.00 0.00 0.00 2.69
250 251 1.377987 CGGGCGGGGAAGATCAAAA 60.378 57.895 0.00 0.00 0.00 2.44
251 252 1.654023 CGGGCGGGGAAGATCAAAAC 61.654 60.000 0.00 0.00 0.00 2.43
252 253 0.323451 GGGCGGGGAAGATCAAAACT 60.323 55.000 0.00 0.00 0.00 2.66
253 254 1.095600 GGCGGGGAAGATCAAAACTC 58.904 55.000 0.00 0.00 0.00 3.01
254 255 0.727398 GCGGGGAAGATCAAAACTCG 59.273 55.000 0.00 0.00 0.00 4.18
255 256 1.674817 GCGGGGAAGATCAAAACTCGA 60.675 52.381 0.00 0.00 0.00 4.04
256 257 2.000447 CGGGGAAGATCAAAACTCGAC 59.000 52.381 0.00 0.00 0.00 4.20
257 258 2.000447 GGGGAAGATCAAAACTCGACG 59.000 52.381 0.00 0.00 0.00 5.12
258 259 2.000447 GGGAAGATCAAAACTCGACGG 59.000 52.381 0.00 0.00 0.00 4.79
259 260 1.393883 GGAAGATCAAAACTCGACGGC 59.606 52.381 0.00 0.00 0.00 5.68
260 261 1.059264 GAAGATCAAAACTCGACGGCG 59.941 52.381 2.87 2.87 39.35 6.46
261 262 0.736325 AGATCAAAACTCGACGGCGG 60.736 55.000 12.58 3.71 38.28 6.13
262 263 2.292802 GATCAAAACTCGACGGCGGC 62.293 60.000 12.58 7.52 38.28 6.53
263 264 4.424430 CAAAACTCGACGGCGGCG 62.424 66.667 32.25 32.25 38.28 6.46
264 265 4.651008 AAAACTCGACGGCGGCGA 62.651 61.111 37.10 37.10 38.28 5.54
285 286 3.632080 TCGCCCCCGAGAAAGCAA 61.632 61.111 0.00 0.00 38.82 3.91
286 287 2.671619 CGCCCCCGAGAAAGCAAA 60.672 61.111 0.00 0.00 36.29 3.68
287 288 2.265182 CGCCCCCGAGAAAGCAAAA 61.265 57.895 0.00 0.00 36.29 2.44
288 289 1.289066 GCCCCCGAGAAAGCAAAAC 59.711 57.895 0.00 0.00 0.00 2.43
289 290 1.964448 CCCCCGAGAAAGCAAAACC 59.036 57.895 0.00 0.00 0.00 3.27
290 291 1.532604 CCCCCGAGAAAGCAAAACCC 61.533 60.000 0.00 0.00 0.00 4.11
291 292 0.539669 CCCCGAGAAAGCAAAACCCT 60.540 55.000 0.00 0.00 0.00 4.34
292 293 1.271707 CCCCGAGAAAGCAAAACCCTA 60.272 52.381 0.00 0.00 0.00 3.53
293 294 2.510613 CCCGAGAAAGCAAAACCCTAA 58.489 47.619 0.00 0.00 0.00 2.69
294 295 2.228103 CCCGAGAAAGCAAAACCCTAAC 59.772 50.000 0.00 0.00 0.00 2.34
295 296 3.146847 CCGAGAAAGCAAAACCCTAACT 58.853 45.455 0.00 0.00 0.00 2.24
296 297 4.320870 CCGAGAAAGCAAAACCCTAACTA 58.679 43.478 0.00 0.00 0.00 2.24
297 298 4.392138 CCGAGAAAGCAAAACCCTAACTAG 59.608 45.833 0.00 0.00 0.00 2.57
298 299 5.235516 CGAGAAAGCAAAACCCTAACTAGA 58.764 41.667 0.00 0.00 0.00 2.43
299 300 5.348997 CGAGAAAGCAAAACCCTAACTAGAG 59.651 44.000 0.00 0.00 0.00 2.43
300 301 5.561679 AGAAAGCAAAACCCTAACTAGAGG 58.438 41.667 0.00 0.00 36.23 3.69
314 315 7.873910 CCTAACTAGAGGGAAAACTATACTCG 58.126 42.308 0.00 0.00 33.58 4.18
315 316 7.718753 CCTAACTAGAGGGAAAACTATACTCGA 59.281 40.741 0.00 0.00 33.58 4.04
316 317 7.951347 AACTAGAGGGAAAACTATACTCGAA 57.049 36.000 0.00 0.00 33.58 3.71
317 318 7.571080 ACTAGAGGGAAAACTATACTCGAAG 57.429 40.000 0.00 0.00 33.58 3.79
318 319 5.265350 AGAGGGAAAACTATACTCGAAGC 57.735 43.478 0.00 0.00 33.58 3.86
319 320 4.099727 AGAGGGAAAACTATACTCGAAGCC 59.900 45.833 0.00 0.00 33.58 4.35
320 321 3.121544 GGGAAAACTATACTCGAAGCCG 58.878 50.000 0.00 0.00 37.07 5.52
321 322 3.429960 GGGAAAACTATACTCGAAGCCGT 60.430 47.826 0.00 0.00 37.05 5.68
322 323 4.179298 GGAAAACTATACTCGAAGCCGTT 58.821 43.478 0.00 0.00 37.05 4.44
323 324 4.267214 GGAAAACTATACTCGAAGCCGTTC 59.733 45.833 0.00 0.00 37.05 3.95
324 325 4.715527 AAACTATACTCGAAGCCGTTCT 57.284 40.909 0.00 0.00 37.05 3.01
325 326 3.694535 ACTATACTCGAAGCCGTTCTG 57.305 47.619 0.00 0.00 37.05 3.02
326 327 3.015327 ACTATACTCGAAGCCGTTCTGT 58.985 45.455 0.00 0.00 37.05 3.41
327 328 3.442977 ACTATACTCGAAGCCGTTCTGTT 59.557 43.478 0.00 0.00 37.05 3.16
328 329 4.637534 ACTATACTCGAAGCCGTTCTGTTA 59.362 41.667 0.00 0.00 37.05 2.41
329 330 2.349297 ACTCGAAGCCGTTCTGTTAG 57.651 50.000 0.00 0.00 37.05 2.34
330 331 0.992802 CTCGAAGCCGTTCTGTTAGC 59.007 55.000 0.00 0.00 37.05 3.09
331 332 0.389426 TCGAAGCCGTTCTGTTAGCC 60.389 55.000 0.00 0.00 37.05 3.93
332 333 0.669318 CGAAGCCGTTCTGTTAGCCA 60.669 55.000 0.00 0.00 0.00 4.75
333 334 0.796927 GAAGCCGTTCTGTTAGCCAC 59.203 55.000 0.00 0.00 0.00 5.01
334 335 0.107831 AAGCCGTTCTGTTAGCCACA 59.892 50.000 0.00 0.00 0.00 4.17
335 336 0.107831 AGCCGTTCTGTTAGCCACAA 59.892 50.000 0.00 0.00 33.87 3.33
336 337 0.517316 GCCGTTCTGTTAGCCACAAG 59.483 55.000 0.00 0.00 33.87 3.16
337 338 1.876416 GCCGTTCTGTTAGCCACAAGA 60.876 52.381 0.00 0.00 33.87 3.02
338 339 2.489971 CCGTTCTGTTAGCCACAAGAA 58.510 47.619 0.00 0.00 33.87 2.52
339 340 2.875933 CCGTTCTGTTAGCCACAAGAAA 59.124 45.455 0.00 0.00 33.87 2.52
340 341 3.058914 CCGTTCTGTTAGCCACAAGAAAG 60.059 47.826 0.00 0.00 33.87 2.62
341 342 3.607078 CGTTCTGTTAGCCACAAGAAAGC 60.607 47.826 0.00 0.00 33.87 3.51
342 343 3.492102 TCTGTTAGCCACAAGAAAGCT 57.508 42.857 0.00 0.00 40.66 3.74
343 344 4.617253 TCTGTTAGCCACAAGAAAGCTA 57.383 40.909 0.00 0.00 38.06 3.32
344 345 4.569943 TCTGTTAGCCACAAGAAAGCTAG 58.430 43.478 0.00 0.00 40.05 3.42
345 346 3.674997 TGTTAGCCACAAGAAAGCTAGG 58.325 45.455 0.00 0.00 40.05 3.02
346 347 3.326588 TGTTAGCCACAAGAAAGCTAGGA 59.673 43.478 0.00 0.00 40.05 2.94
347 348 4.202419 TGTTAGCCACAAGAAAGCTAGGAA 60.202 41.667 0.00 0.00 40.05 3.36
348 349 3.508845 AGCCACAAGAAAGCTAGGAAA 57.491 42.857 0.00 0.00 34.38 3.13
349 350 3.416156 AGCCACAAGAAAGCTAGGAAAG 58.584 45.455 0.00 0.00 34.38 2.62
350 351 3.073062 AGCCACAAGAAAGCTAGGAAAGA 59.927 43.478 0.00 0.00 34.38 2.52
351 352 4.013050 GCCACAAGAAAGCTAGGAAAGAT 58.987 43.478 0.00 0.00 0.00 2.40
352 353 5.045578 AGCCACAAGAAAGCTAGGAAAGATA 60.046 40.000 0.00 0.00 34.38 1.98
353 354 5.648092 GCCACAAGAAAGCTAGGAAAGATAA 59.352 40.000 0.00 0.00 0.00 1.75
354 355 6.151144 GCCACAAGAAAGCTAGGAAAGATAAA 59.849 38.462 0.00 0.00 0.00 1.40
355 356 7.530863 CCACAAGAAAGCTAGGAAAGATAAAC 58.469 38.462 0.00 0.00 0.00 2.01
356 357 7.174946 CCACAAGAAAGCTAGGAAAGATAAACA 59.825 37.037 0.00 0.00 0.00 2.83
357 358 8.233190 CACAAGAAAGCTAGGAAAGATAAACAG 58.767 37.037 0.00 0.00 0.00 3.16
358 359 8.157476 ACAAGAAAGCTAGGAAAGATAAACAGA 58.843 33.333 0.00 0.00 0.00 3.41
359 360 8.447053 CAAGAAAGCTAGGAAAGATAAACAGAC 58.553 37.037 0.00 0.00 0.00 3.51
360 361 7.912719 AGAAAGCTAGGAAAGATAAACAGACT 58.087 34.615 0.00 0.00 0.00 3.24
361 362 9.036980 AGAAAGCTAGGAAAGATAAACAGACTA 57.963 33.333 0.00 0.00 0.00 2.59
362 363 9.654663 GAAAGCTAGGAAAGATAAACAGACTAA 57.345 33.333 0.00 0.00 0.00 2.24
363 364 9.438228 AAAGCTAGGAAAGATAAACAGACTAAC 57.562 33.333 0.00 0.00 0.00 2.34
364 365 8.135382 AGCTAGGAAAGATAAACAGACTAACA 57.865 34.615 0.00 0.00 0.00 2.41
365 366 8.254508 AGCTAGGAAAGATAAACAGACTAACAG 58.745 37.037 0.00 0.00 0.00 3.16
366 367 8.251721 GCTAGGAAAGATAAACAGACTAACAGA 58.748 37.037 0.00 0.00 0.00 3.41
367 368 9.796120 CTAGGAAAGATAAACAGACTAACAGAG 57.204 37.037 0.00 0.00 0.00 3.35
368 369 7.616313 AGGAAAGATAAACAGACTAACAGAGG 58.384 38.462 0.00 0.00 0.00 3.69
369 370 6.314152 GGAAAGATAAACAGACTAACAGAGGC 59.686 42.308 0.00 0.00 0.00 4.70
370 371 6.360370 AAGATAAACAGACTAACAGAGGCA 57.640 37.500 0.00 0.00 34.40 4.75
371 372 5.971763 AGATAAACAGACTAACAGAGGCAG 58.028 41.667 0.00 0.00 34.40 4.85
372 373 3.409026 AAACAGACTAACAGAGGCAGG 57.591 47.619 0.00 0.00 34.40 4.85
373 374 2.310779 ACAGACTAACAGAGGCAGGA 57.689 50.000 0.00 0.00 34.40 3.86
374 375 2.826488 ACAGACTAACAGAGGCAGGAT 58.174 47.619 0.00 0.00 34.40 3.24
375 376 2.763448 ACAGACTAACAGAGGCAGGATC 59.237 50.000 0.00 0.00 34.40 3.36
376 377 2.028130 AGACTAACAGAGGCAGGATCG 58.972 52.381 0.00 0.00 34.40 3.69
377 378 1.067821 GACTAACAGAGGCAGGATCGG 59.932 57.143 0.00 0.00 30.86 4.18
378 379 0.390860 CTAACAGAGGCAGGATCGGG 59.609 60.000 0.00 0.00 0.00 5.14
379 380 0.325296 TAACAGAGGCAGGATCGGGT 60.325 55.000 0.00 0.00 0.00 5.28
380 381 1.617947 AACAGAGGCAGGATCGGGTC 61.618 60.000 0.00 0.00 0.00 4.46
381 382 2.835431 AGAGGCAGGATCGGGTCG 60.835 66.667 0.00 0.00 0.00 4.79
382 383 3.917760 GAGGCAGGATCGGGTCGG 61.918 72.222 0.00 0.00 0.00 4.79
386 387 3.470888 CAGGATCGGGTCGGCCTT 61.471 66.667 5.77 0.00 31.97 4.35
387 388 2.687566 AGGATCGGGTCGGCCTTT 60.688 61.111 5.77 0.00 30.67 3.11
388 389 1.382146 AGGATCGGGTCGGCCTTTA 60.382 57.895 5.77 0.00 30.67 1.85
389 390 0.763223 AGGATCGGGTCGGCCTTTAT 60.763 55.000 5.77 0.00 30.67 1.40
390 391 0.602905 GGATCGGGTCGGCCTTTATG 60.603 60.000 5.77 0.00 34.45 1.90
391 392 0.602905 GATCGGGTCGGCCTTTATGG 60.603 60.000 5.77 0.00 39.35 2.74
405 406 3.987220 CCTTTATGGCAAACAAAACGAGG 59.013 43.478 0.00 0.00 0.00 4.63
406 407 4.261825 CCTTTATGGCAAACAAAACGAGGA 60.262 41.667 0.00 0.00 0.00 3.71
407 408 5.461032 TTTATGGCAAACAAAACGAGGAT 57.539 34.783 0.00 0.00 0.00 3.24
408 409 5.461032 TTATGGCAAACAAAACGAGGATT 57.539 34.783 0.00 0.00 0.00 3.01
409 410 3.090952 TGGCAAACAAAACGAGGATTG 57.909 42.857 0.00 0.00 0.00 2.67
410 411 2.223923 TGGCAAACAAAACGAGGATTGG 60.224 45.455 0.00 0.00 0.00 3.16
411 412 2.403259 GCAAACAAAACGAGGATTGGG 58.597 47.619 0.00 0.00 0.00 4.12
412 413 2.403259 CAAACAAAACGAGGATTGGGC 58.597 47.619 0.00 0.00 0.00 5.36
413 414 0.966179 AACAAAACGAGGATTGGGCC 59.034 50.000 0.00 0.00 0.00 5.80
414 415 1.241315 ACAAAACGAGGATTGGGCCG 61.241 55.000 0.00 0.00 0.00 6.13
415 416 1.677633 AAAACGAGGATTGGGCCGG 60.678 57.895 0.00 0.00 0.00 6.13
416 417 4.796495 AACGAGGATTGGGCCGGC 62.796 66.667 21.18 21.18 0.00 6.13
419 420 4.883354 GAGGATTGGGCCGGCCTG 62.883 72.222 42.70 0.00 36.10 4.85
1014 1015 7.116233 GGGATTTGATTCATGTTGTTTGTACAC 59.884 37.037 0.00 0.00 32.98 2.90
1048 1049 6.408776 GGAATTTTTAGGGTTTTGGGAGTTGT 60.409 38.462 0.00 0.00 0.00 3.32
1060 1061 5.413309 TTGGGAGTTGTTTCATGTTGTTT 57.587 34.783 0.00 0.00 0.00 2.83
1068 1069 4.118410 TGTTTCATGTTGTTTGCACATCC 58.882 39.130 0.00 0.00 31.06 3.51
1186 1187 0.942962 GCTCTCCTCCATGCGAATTG 59.057 55.000 0.00 0.00 0.00 2.32
1191 1192 2.754552 CTCCTCCATGCGAATTGGAAAA 59.245 45.455 3.48 0.00 42.56 2.29
1199 1200 3.911868 TGCGAATTGGAAAATTCTGTGG 58.088 40.909 8.96 0.00 37.10 4.17
1204 1205 6.620678 CGAATTGGAAAATTCTGTGGTACAT 58.379 36.000 8.96 0.00 37.59 2.29
1205 1206 6.527722 CGAATTGGAAAATTCTGTGGTACATG 59.472 38.462 8.96 0.00 37.59 3.21
1206 1207 6.916360 ATTGGAAAATTCTGTGGTACATGT 57.084 33.333 2.69 2.69 44.52 3.21
1301 1302 1.169661 TGCAGTTTGCCAAGTACGGG 61.170 55.000 2.55 2.55 44.23 5.28
1327 1328 4.607293 ATGCTGAGCGGATGTAAGATAA 57.393 40.909 0.00 0.00 0.00 1.75
1399 1400 2.233922 CACTTACTCCCTCGGTTCACAT 59.766 50.000 0.00 0.00 0.00 3.21
1457 1460 4.795970 ACGAACTGAAATGAGTGAACAC 57.204 40.909 0.00 0.00 0.00 3.32
1492 1495 8.397951 AATGTGTCTATATACATCCCATCCAT 57.602 34.615 0.00 0.00 36.52 3.41
1531 1534 7.492352 AAATCTTATATTTGTGTACGGAGGC 57.508 36.000 0.00 0.00 0.00 4.70
1541 1544 5.149973 TGTGTACGGAGGCACTATTTTTA 57.850 39.130 0.00 0.00 41.55 1.52
1581 1584 3.137544 TGATATTTAGGCATGGACCGGTT 59.862 43.478 9.42 0.00 33.69 4.44
1838 1851 9.846248 GTCTTAATTACACAATTTGCTGATCTT 57.154 29.630 0.00 0.00 35.88 2.40
1891 1911 7.750458 GGTTACAACTTGTGTGAATATGTGATG 59.250 37.037 4.57 0.00 41.89 3.07
1963 1983 0.745845 AAGAAGTGGGCATGCGCTAG 60.746 55.000 31.56 1.38 38.60 3.42
2046 2083 7.502120 AGTAAGCTATGCATATTTTGTCAGG 57.498 36.000 6.92 0.00 0.00 3.86
2184 2221 6.073003 CCGATGACCTAATATTCTTTTGCCTC 60.073 42.308 0.00 0.00 0.00 4.70
2409 2464 2.959967 CTTGTGCACAAGCCCCATA 58.040 52.632 38.56 14.36 45.59 2.74
2413 2468 1.757731 TGCACAAGCCCCATATGCC 60.758 57.895 0.00 0.00 41.13 4.40
2414 2469 1.456331 GCACAAGCCCCATATGCCT 60.456 57.895 0.00 0.00 33.58 4.75
2454 2524 9.252962 GGGATTCAATTGAAGCACATTATTAAG 57.747 33.333 31.13 0.00 42.89 1.85
2569 2639 0.676466 GGACATGCCATGGTTGTCGA 60.676 55.000 28.54 6.17 40.49 4.20
2586 2656 1.339929 TCGACTTTGCTGACTGCTACA 59.660 47.619 5.87 0.00 43.37 2.74
2611 2686 2.956333 TCTATTGGTCACGTCGATGGAT 59.044 45.455 9.90 0.00 0.00 3.41
2657 2732 8.839310 AAGATTATCTATCAAAGTGGGATTCG 57.161 34.615 0.00 0.00 35.59 3.34
2662 2737 6.233905 TCTATCAAAGTGGGATTCGATTCA 57.766 37.500 9.36 0.00 0.00 2.57
2825 2900 2.291024 TGACAGGTACAGAGAGAGGGAC 60.291 54.545 0.00 0.00 0.00 4.46
3126 3205 2.939460 ATTATTGCAGTTTGTCGCCC 57.061 45.000 0.00 0.00 0.00 6.13
3175 3272 1.837051 AAGACACCACCTCCTCGCA 60.837 57.895 0.00 0.00 0.00 5.10
3179 3276 1.374758 CACCACCTCCTCGCAAGAC 60.375 63.158 0.00 0.00 45.01 3.01
3180 3277 1.837051 ACCACCTCCTCGCAAGACA 60.837 57.895 0.00 0.00 45.01 3.41
3181 3278 1.374758 CCACCTCCTCGCAAGACAC 60.375 63.158 0.00 0.00 45.01 3.67
3183 3280 1.837051 ACCTCCTCGCAAGACACCA 60.837 57.895 0.00 0.00 45.01 4.17
3187 3284 1.374758 CCTCGCAAGACACCACCTC 60.375 63.158 0.00 0.00 45.01 3.85
3190 3287 1.071471 CGCAAGACACCACCTCCTT 59.929 57.895 0.00 0.00 43.02 3.36
3192 3289 2.633860 CAAGACACCACCTCCTTGC 58.366 57.895 0.00 0.00 31.11 4.01
3193 3290 1.071471 AAGACACCACCTCCTTGCG 59.929 57.895 0.00 0.00 0.00 4.85
3194 3291 1.407656 AAGACACCACCTCCTTGCGA 61.408 55.000 0.00 0.00 0.00 5.10
3195 3292 1.374758 GACACCACCTCCTTGCGAG 60.375 63.158 0.00 0.00 38.46 5.03
3439 3572 3.920231 TGGAACAGAGCTGCTCATATT 57.080 42.857 29.49 19.79 32.06 1.28
3481 3614 7.430502 GCTTTATCATGAACAATCTGCAGTTAC 59.569 37.037 14.67 1.82 0.00 2.50
3482 3615 7.920160 TTATCATGAACAATCTGCAGTTACA 57.080 32.000 14.67 7.33 0.00 2.41
3483 3616 6.822667 ATCATGAACAATCTGCAGTTACAA 57.177 33.333 14.67 0.00 0.00 2.41
3484 3617 6.822667 TCATGAACAATCTGCAGTTACAAT 57.177 33.333 14.67 0.00 0.00 2.71
3485 3618 7.218228 TCATGAACAATCTGCAGTTACAATT 57.782 32.000 14.67 2.45 0.00 2.32
3486 3619 7.085746 TCATGAACAATCTGCAGTTACAATTG 58.914 34.615 18.55 18.55 34.34 2.32
3517 3650 0.943673 TGTTGTGGTGCTTGACATCG 59.056 50.000 0.00 0.00 28.88 3.84
3530 3663 3.850122 TGACATCGGTGACTACTTCAG 57.150 47.619 0.65 0.00 33.71 3.02
3599 3732 7.973048 ATATGTACTACTTCACCTTCTTCCA 57.027 36.000 0.00 0.00 0.00 3.53
3622 3755 7.283127 TCCAATTCAATCTTGTCTATTAGCACC 59.717 37.037 0.00 0.00 0.00 5.01
3724 3857 1.745653 GAGGTGCTGGTTGATAAAGGC 59.254 52.381 0.00 0.00 0.00 4.35
3836 3972 1.307647 GCTGGTGGGGGTTGATGAT 59.692 57.895 0.00 0.00 0.00 2.45
3838 3974 0.396139 CTGGTGGGGGTTGATGATGG 60.396 60.000 0.00 0.00 0.00 3.51
3857 3993 1.621107 GTGGTGATCATTTTGCTGCG 58.379 50.000 0.00 0.00 0.00 5.18
3962 4098 8.380099 AGTATTAAACAACTCTGGTCCATGTTA 58.620 33.333 8.64 0.00 33.39 2.41
4010 4148 4.345257 TGGTTTCTTAGTTGAGTCTCTGCT 59.655 41.667 0.65 2.10 0.00 4.24
4026 4164 8.604640 AGTCTCTGCTCATGATTTATGTTATG 57.395 34.615 0.00 0.00 38.01 1.90
4089 4232 5.555966 ACATTTGGGTGTTCTTTGTTGTTT 58.444 33.333 0.00 0.00 0.00 2.83
4284 4427 8.918202 ATTTTGTGTGGTTTATAGAGTTCAGA 57.082 30.769 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.579738 GGCTGAAGGAGGACGACC 59.420 66.667 0.00 0.00 0.00 4.79
6 7 0.683504 TAGGGCTGAAGGAGGACGAC 60.684 60.000 0.00 0.00 0.00 4.34
7 8 0.395862 CTAGGGCTGAAGGAGGACGA 60.396 60.000 0.00 0.00 0.00 4.20
8 9 2.022240 GCTAGGGCTGAAGGAGGACG 62.022 65.000 0.00 0.00 35.22 4.79
9 10 1.826709 GCTAGGGCTGAAGGAGGAC 59.173 63.158 0.00 0.00 35.22 3.85
10 11 4.382852 GCTAGGGCTGAAGGAGGA 57.617 61.111 0.00 0.00 35.22 3.71
20 21 1.003003 GGATGATGGAAGAGCTAGGGC 59.997 57.143 0.00 0.00 39.06 5.19
21 22 2.618794 AGGATGATGGAAGAGCTAGGG 58.381 52.381 0.00 0.00 0.00 3.53
22 23 3.806507 GCAAGGATGATGGAAGAGCTAGG 60.807 52.174 0.00 0.00 0.00 3.02
23 24 3.401182 GCAAGGATGATGGAAGAGCTAG 58.599 50.000 0.00 0.00 0.00 3.42
24 25 2.224137 CGCAAGGATGATGGAAGAGCTA 60.224 50.000 0.00 0.00 0.00 3.32
25 26 1.474677 CGCAAGGATGATGGAAGAGCT 60.475 52.381 0.00 0.00 0.00 4.09
26 27 0.942962 CGCAAGGATGATGGAAGAGC 59.057 55.000 0.00 0.00 0.00 4.09
27 28 2.208431 GTCGCAAGGATGATGGAAGAG 58.792 52.381 0.00 0.00 38.47 2.85
28 29 1.471501 CGTCGCAAGGATGATGGAAGA 60.472 52.381 0.00 0.00 33.19 2.87
29 30 0.933097 CGTCGCAAGGATGATGGAAG 59.067 55.000 0.00 0.00 33.19 3.46
30 31 0.249120 ACGTCGCAAGGATGATGGAA 59.751 50.000 0.00 0.00 35.54 3.53
31 32 0.179111 GACGTCGCAAGGATGATGGA 60.179 55.000 0.00 0.00 35.54 3.41
32 33 1.482621 CGACGTCGCAAGGATGATGG 61.483 60.000 26.59 0.00 35.54 3.51
33 34 1.920051 CGACGTCGCAAGGATGATG 59.080 57.895 26.59 0.00 35.54 3.07
34 35 4.402192 CGACGTCGCAAGGATGAT 57.598 55.556 26.59 0.00 35.54 2.45
44 45 3.471244 GAGGGGATCAGCGACGTCG 62.471 68.421 32.57 32.57 43.27 5.12
45 46 2.413765 GAGGGGATCAGCGACGTC 59.586 66.667 5.18 5.18 0.00 4.34
46 47 3.148279 GGAGGGGATCAGCGACGT 61.148 66.667 0.00 0.00 0.00 4.34
47 48 4.271816 CGGAGGGGATCAGCGACG 62.272 72.222 0.00 0.00 0.00 5.12
48 49 1.389609 TTACGGAGGGGATCAGCGAC 61.390 60.000 0.00 0.00 0.00 5.19
49 50 1.076559 TTACGGAGGGGATCAGCGA 60.077 57.895 0.00 0.00 0.00 4.93
50 51 1.364171 CTTACGGAGGGGATCAGCG 59.636 63.158 0.00 0.00 0.00 5.18
51 52 1.069935 GCTTACGGAGGGGATCAGC 59.930 63.158 0.00 0.00 0.00 4.26
52 53 1.364171 CGCTTACGGAGGGGATCAG 59.636 63.158 0.00 0.00 34.83 2.90
53 54 3.533720 CGCTTACGGAGGGGATCA 58.466 61.111 0.00 0.00 34.83 2.92
63 64 1.932604 GCAGATGGATCTCCGCTTACG 60.933 57.143 0.00 0.00 39.43 3.18
64 65 1.606737 GGCAGATGGATCTCCGCTTAC 60.607 57.143 0.00 0.00 39.43 2.34
65 66 0.681733 GGCAGATGGATCTCCGCTTA 59.318 55.000 0.00 0.00 39.43 3.09
66 67 1.449353 GGCAGATGGATCTCCGCTT 59.551 57.895 0.00 0.00 39.43 4.68
67 68 2.865598 CGGCAGATGGATCTCCGCT 61.866 63.158 11.85 0.00 39.15 5.52
68 69 2.356793 CGGCAGATGGATCTCCGC 60.357 66.667 11.85 3.52 39.15 5.54
69 70 2.356793 GCGGCAGATGGATCTCCG 60.357 66.667 16.70 16.70 43.74 4.63
70 71 2.031768 GGCGGCAGATGGATCTCC 59.968 66.667 3.07 0.00 34.22 3.71
71 72 0.954449 CATGGCGGCAGATGGATCTC 60.954 60.000 19.29 0.00 34.22 2.75
72 73 1.072678 CATGGCGGCAGATGGATCT 59.927 57.895 19.29 0.00 37.72 2.75
73 74 1.228063 ACATGGCGGCAGATGGATC 60.228 57.895 19.29 0.00 0.00 3.36
74 75 1.228063 GACATGGCGGCAGATGGAT 60.228 57.895 19.29 0.00 0.00 3.41
75 76 2.190313 GACATGGCGGCAGATGGA 59.810 61.111 19.29 0.00 0.00 3.41
76 77 3.274586 CGACATGGCGGCAGATGG 61.275 66.667 14.85 9.40 0.00 3.51
77 78 1.368345 TTTCGACATGGCGGCAGATG 61.368 55.000 23.19 14.57 0.00 2.90
78 79 1.078497 TTTCGACATGGCGGCAGAT 60.078 52.632 23.19 7.76 0.00 2.90
79 80 2.032634 GTTTCGACATGGCGGCAGA 61.033 57.895 23.19 6.14 0.00 4.26
80 81 2.480555 GTTTCGACATGGCGGCAG 59.519 61.111 23.19 12.11 0.00 4.85
81 82 3.053291 GGTTTCGACATGGCGGCA 61.053 61.111 23.19 16.34 0.00 5.69
82 83 2.862674 TAGGGTTTCGACATGGCGGC 62.863 60.000 23.19 11.71 0.00 6.53
83 84 0.391927 TTAGGGTTTCGACATGGCGG 60.392 55.000 23.19 2.05 0.00 6.13
84 85 0.725117 GTTAGGGTTTCGACATGGCG 59.275 55.000 16.88 16.88 0.00 5.69
85 86 1.092348 GGTTAGGGTTTCGACATGGC 58.908 55.000 0.00 0.00 0.00 4.40
86 87 1.746470 GGGTTAGGGTTTCGACATGG 58.254 55.000 0.00 0.00 0.00 3.66
87 88 1.066716 TCGGGTTAGGGTTTCGACATG 60.067 52.381 0.00 0.00 0.00 3.21
88 89 1.206371 CTCGGGTTAGGGTTTCGACAT 59.794 52.381 0.00 0.00 0.00 3.06
89 90 0.604578 CTCGGGTTAGGGTTTCGACA 59.395 55.000 0.00 0.00 0.00 4.35
90 91 0.605083 ACTCGGGTTAGGGTTTCGAC 59.395 55.000 0.00 0.00 0.00 4.20
91 92 1.341080 AACTCGGGTTAGGGTTTCGA 58.659 50.000 0.00 0.00 28.91 3.71
92 93 2.174363 AAACTCGGGTTAGGGTTTCG 57.826 50.000 0.00 0.00 40.48 3.46
93 94 5.308014 TCTTTAAACTCGGGTTAGGGTTTC 58.692 41.667 0.00 0.00 43.13 2.78
94 95 5.308976 TCTTTAAACTCGGGTTAGGGTTT 57.691 39.130 0.00 0.58 45.70 3.27
95 96 4.980339 TCTTTAAACTCGGGTTAGGGTT 57.020 40.909 0.00 0.00 36.15 4.11
96 97 4.382362 CGATCTTTAAACTCGGGTTAGGGT 60.382 45.833 0.00 0.00 34.90 4.34
97 98 4.117685 CGATCTTTAAACTCGGGTTAGGG 58.882 47.826 0.00 0.00 34.90 3.53
98 99 4.117685 CCGATCTTTAAACTCGGGTTAGG 58.882 47.826 19.78 0.00 46.32 2.69
105 106 4.435651 GCAGAAACCCGATCTTTAAACTCG 60.436 45.833 7.97 7.97 0.00 4.18
106 107 4.454504 TGCAGAAACCCGATCTTTAAACTC 59.545 41.667 0.00 0.00 0.00 3.01
107 108 4.394729 TGCAGAAACCCGATCTTTAAACT 58.605 39.130 0.00 0.00 0.00 2.66
108 109 4.215613 ACTGCAGAAACCCGATCTTTAAAC 59.784 41.667 23.35 0.00 0.00 2.01
109 110 4.394729 ACTGCAGAAACCCGATCTTTAAA 58.605 39.130 23.35 0.00 0.00 1.52
110 111 4.000988 GACTGCAGAAACCCGATCTTTAA 58.999 43.478 23.35 0.00 0.00 1.52
111 112 3.596214 GACTGCAGAAACCCGATCTTTA 58.404 45.455 23.35 0.00 0.00 1.85
112 113 2.427506 GACTGCAGAAACCCGATCTTT 58.572 47.619 23.35 0.00 0.00 2.52
113 114 1.673033 CGACTGCAGAAACCCGATCTT 60.673 52.381 23.35 0.00 0.00 2.40
114 115 0.108615 CGACTGCAGAAACCCGATCT 60.109 55.000 23.35 0.00 0.00 2.75
115 116 1.696832 GCGACTGCAGAAACCCGATC 61.697 60.000 23.35 3.45 42.15 3.69
116 117 1.741770 GCGACTGCAGAAACCCGAT 60.742 57.895 23.35 0.00 42.15 4.18
117 118 2.357034 GCGACTGCAGAAACCCGA 60.357 61.111 23.35 0.00 42.15 5.14
118 119 3.423154 GGCGACTGCAGAAACCCG 61.423 66.667 23.35 15.35 45.35 5.28
119 120 2.180159 TAGGGCGACTGCAGAAACCC 62.180 60.000 23.35 24.77 45.35 4.11
120 121 0.107654 ATAGGGCGACTGCAGAAACC 60.108 55.000 23.35 17.12 45.35 3.27
121 122 1.009829 CATAGGGCGACTGCAGAAAC 58.990 55.000 23.35 10.28 45.35 2.78
122 123 0.744414 GCATAGGGCGACTGCAGAAA 60.744 55.000 23.35 0.00 45.35 2.52
123 124 1.153369 GCATAGGGCGACTGCAGAA 60.153 57.895 23.35 0.00 45.35 3.02
124 125 2.501128 GCATAGGGCGACTGCAGA 59.499 61.111 23.35 0.00 45.35 4.26
125 126 2.590007 GGCATAGGGCGACTGCAG 60.590 66.667 13.48 13.48 46.16 4.41
126 127 4.175337 GGGCATAGGGCGACTGCA 62.175 66.667 3.16 0.00 46.16 4.41
127 128 4.937431 GGGGCATAGGGCGACTGC 62.937 72.222 0.00 0.00 46.16 4.40
128 129 4.256180 GGGGGCATAGGGCGACTG 62.256 72.222 0.00 0.00 46.16 3.51
131 132 4.954118 ATCGGGGGCATAGGGCGA 62.954 66.667 0.00 0.00 46.16 5.54
132 133 4.394712 GATCGGGGGCATAGGGCG 62.395 72.222 0.00 0.00 46.16 6.13
133 134 4.035102 GGATCGGGGGCATAGGGC 62.035 72.222 0.00 0.00 43.74 5.19
134 135 2.203998 AGGATCGGGGGCATAGGG 60.204 66.667 0.00 0.00 0.00 3.53
135 136 1.229336 AGAGGATCGGGGGCATAGG 60.229 63.158 0.00 0.00 42.67 2.57
136 137 0.542938 TCAGAGGATCGGGGGCATAG 60.543 60.000 0.00 0.00 42.67 2.23
137 138 0.105194 TTCAGAGGATCGGGGGCATA 60.105 55.000 0.00 0.00 42.67 3.14
138 139 0.988145 TTTCAGAGGATCGGGGGCAT 60.988 55.000 0.00 0.00 42.67 4.40
139 140 1.204786 TTTTCAGAGGATCGGGGGCA 61.205 55.000 0.00 0.00 42.67 5.36
140 141 0.748367 GTTTTCAGAGGATCGGGGGC 60.748 60.000 0.00 0.00 42.67 5.80
141 142 0.618458 TGTTTTCAGAGGATCGGGGG 59.382 55.000 0.00 0.00 42.67 5.40
153 154 0.827507 GAGGGCCTTGGCTGTTTTCA 60.828 55.000 7.89 0.00 0.00 2.69
154 155 1.866853 CGAGGGCCTTGGCTGTTTTC 61.867 60.000 13.46 0.00 0.00 2.29
155 156 1.903404 CGAGGGCCTTGGCTGTTTT 60.903 57.895 13.46 0.00 0.00 2.43
156 157 2.282462 CGAGGGCCTTGGCTGTTT 60.282 61.111 13.46 0.00 0.00 2.83
157 158 4.351054 CCGAGGGCCTTGGCTGTT 62.351 66.667 26.95 0.00 0.00 3.16
168 169 3.775654 GTGTCTCCTGGCCGAGGG 61.776 72.222 17.89 11.24 43.06 4.30
169 170 3.775654 GGTGTCTCCTGGCCGAGG 61.776 72.222 13.43 13.43 44.45 4.63
170 171 4.135153 CGGTGTCTCCTGGCCGAG 62.135 72.222 0.00 0.00 46.33 4.63
172 173 4.135153 CTCGGTGTCTCCTGGCCG 62.135 72.222 0.00 3.62 44.95 6.13
173 174 2.680352 TCTCGGTGTCTCCTGGCC 60.680 66.667 0.00 0.00 0.00 5.36
174 175 2.716017 CCTCTCGGTGTCTCCTGGC 61.716 68.421 0.00 0.00 0.00 4.85
175 176 2.716017 GCCTCTCGGTGTCTCCTGG 61.716 68.421 0.00 0.00 0.00 4.45
176 177 2.716017 GGCCTCTCGGTGTCTCCTG 61.716 68.421 0.00 0.00 0.00 3.86
177 178 2.363147 GGCCTCTCGGTGTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
178 179 3.462678 GGGCCTCTCGGTGTCTCC 61.463 72.222 0.84 0.00 0.00 3.71
179 180 2.363147 AGGGCCTCTCGGTGTCTC 60.363 66.667 0.00 0.00 0.00 3.36
180 181 2.363147 GAGGGCCTCTCGGTGTCT 60.363 66.667 26.44 0.00 32.18 3.41
181 182 3.462678 GGAGGGCCTCTCGGTGTC 61.463 72.222 31.39 10.61 43.34 3.67
196 197 4.689549 TTCTCCTGGACCGCGGGA 62.690 66.667 31.76 15.62 0.00 5.14
197 198 4.148825 CTTCTCCTGGACCGCGGG 62.149 72.222 31.76 11.50 0.00 6.13
198 199 2.005960 CTACTTCTCCTGGACCGCGG 62.006 65.000 26.86 26.86 0.00 6.46
199 200 1.433879 CTACTTCTCCTGGACCGCG 59.566 63.158 0.00 0.00 0.00 6.46
200 201 1.142097 GCTACTTCTCCTGGACCGC 59.858 63.158 0.00 0.00 0.00 5.68
201 202 0.457851 CAGCTACTTCTCCTGGACCG 59.542 60.000 0.00 0.00 0.00 4.79
202 203 0.176910 GCAGCTACTTCTCCTGGACC 59.823 60.000 0.00 0.00 0.00 4.46
203 204 0.179124 CGCAGCTACTTCTCCTGGAC 60.179 60.000 0.00 0.00 0.00 4.02
204 205 1.323271 CCGCAGCTACTTCTCCTGGA 61.323 60.000 0.00 0.00 0.00 3.86
205 206 1.142748 CCGCAGCTACTTCTCCTGG 59.857 63.158 0.00 0.00 0.00 4.45
206 207 0.102120 CTCCGCAGCTACTTCTCCTG 59.898 60.000 0.00 0.00 0.00 3.86
207 208 1.040339 CCTCCGCAGCTACTTCTCCT 61.040 60.000 0.00 0.00 0.00 3.69
208 209 1.439644 CCTCCGCAGCTACTTCTCC 59.560 63.158 0.00 0.00 0.00 3.71
209 210 1.439644 CCCTCCGCAGCTACTTCTC 59.560 63.158 0.00 0.00 0.00 2.87
210 211 2.060980 CCCCTCCGCAGCTACTTCT 61.061 63.158 0.00 0.00 0.00 2.85
211 212 2.299503 GACCCCTCCGCAGCTACTTC 62.300 65.000 0.00 0.00 0.00 3.01
212 213 2.284699 ACCCCTCCGCAGCTACTT 60.285 61.111 0.00 0.00 0.00 2.24
213 214 2.760385 GACCCCTCCGCAGCTACT 60.760 66.667 0.00 0.00 0.00 2.57
214 215 4.208686 CGACCCCTCCGCAGCTAC 62.209 72.222 0.00 0.00 0.00 3.58
231 232 3.987954 TTTGATCTTCCCCGCCCGC 62.988 63.158 0.00 0.00 0.00 6.13
232 233 1.377987 TTTTGATCTTCCCCGCCCG 60.378 57.895 0.00 0.00 0.00 6.13
233 234 0.323451 AGTTTTGATCTTCCCCGCCC 60.323 55.000 0.00 0.00 0.00 6.13
234 235 1.095600 GAGTTTTGATCTTCCCCGCC 58.904 55.000 0.00 0.00 0.00 6.13
235 236 0.727398 CGAGTTTTGATCTTCCCCGC 59.273 55.000 0.00 0.00 0.00 6.13
236 237 2.000447 GTCGAGTTTTGATCTTCCCCG 59.000 52.381 0.00 0.00 0.00 5.73
237 238 2.000447 CGTCGAGTTTTGATCTTCCCC 59.000 52.381 0.00 0.00 0.00 4.81
238 239 2.000447 CCGTCGAGTTTTGATCTTCCC 59.000 52.381 0.00 0.00 0.00 3.97
239 240 1.393883 GCCGTCGAGTTTTGATCTTCC 59.606 52.381 0.00 0.00 0.00 3.46
240 241 1.059264 CGCCGTCGAGTTTTGATCTTC 59.941 52.381 0.00 0.00 38.10 2.87
241 242 1.068474 CGCCGTCGAGTTTTGATCTT 58.932 50.000 0.00 0.00 38.10 2.40
242 243 0.736325 CCGCCGTCGAGTTTTGATCT 60.736 55.000 0.00 0.00 38.10 2.75
243 244 1.708027 CCGCCGTCGAGTTTTGATC 59.292 57.895 0.00 0.00 38.10 2.92
244 245 2.388232 GCCGCCGTCGAGTTTTGAT 61.388 57.895 0.00 0.00 38.10 2.57
245 246 3.039588 GCCGCCGTCGAGTTTTGA 61.040 61.111 0.00 0.00 38.10 2.69
246 247 4.424430 CGCCGCCGTCGAGTTTTG 62.424 66.667 0.00 0.00 38.10 2.44
247 248 4.651008 TCGCCGCCGTCGAGTTTT 62.651 61.111 0.00 0.00 38.10 2.43
262 263 2.845752 TTTCTCGGGGGCGATTGTCG 62.846 60.000 0.00 0.00 43.89 4.35
263 264 1.078708 TTTCTCGGGGGCGATTGTC 60.079 57.895 0.00 0.00 0.00 3.18
264 265 1.078426 CTTTCTCGGGGGCGATTGT 60.078 57.895 0.00 0.00 0.00 2.71
265 266 2.472909 GCTTTCTCGGGGGCGATTG 61.473 63.158 0.00 0.00 0.00 2.67
266 267 2.124695 GCTTTCTCGGGGGCGATT 60.125 61.111 0.00 0.00 0.00 3.34
267 268 2.478335 TTTGCTTTCTCGGGGGCGAT 62.478 55.000 0.00 0.00 0.00 4.58
268 269 2.684192 TTTTGCTTTCTCGGGGGCGA 62.684 55.000 0.00 0.00 0.00 5.54
269 270 2.265182 TTTTGCTTTCTCGGGGGCG 61.265 57.895 0.00 0.00 0.00 6.13
270 271 1.289066 GTTTTGCTTTCTCGGGGGC 59.711 57.895 0.00 0.00 0.00 5.80
271 272 1.532604 GGGTTTTGCTTTCTCGGGGG 61.533 60.000 0.00 0.00 0.00 5.40
272 273 0.539669 AGGGTTTTGCTTTCTCGGGG 60.540 55.000 0.00 0.00 0.00 5.73
273 274 2.194201 TAGGGTTTTGCTTTCTCGGG 57.806 50.000 0.00 0.00 0.00 5.14
274 275 3.146847 AGTTAGGGTTTTGCTTTCTCGG 58.853 45.455 0.00 0.00 0.00 4.63
275 276 5.235516 TCTAGTTAGGGTTTTGCTTTCTCG 58.764 41.667 0.00 0.00 0.00 4.04
276 277 5.644206 CCTCTAGTTAGGGTTTTGCTTTCTC 59.356 44.000 0.00 0.00 32.55 2.87
277 278 5.561679 CCTCTAGTTAGGGTTTTGCTTTCT 58.438 41.667 0.00 0.00 32.55 2.52
278 279 5.881777 CCTCTAGTTAGGGTTTTGCTTTC 57.118 43.478 0.00 0.00 32.55 2.62
289 290 7.718753 TCGAGTATAGTTTTCCCTCTAGTTAGG 59.281 40.741 0.00 0.00 36.30 2.69
290 291 8.674263 TCGAGTATAGTTTTCCCTCTAGTTAG 57.326 38.462 0.00 0.00 0.00 2.34
291 292 9.118300 CTTCGAGTATAGTTTTCCCTCTAGTTA 57.882 37.037 0.00 0.00 0.00 2.24
292 293 7.416551 GCTTCGAGTATAGTTTTCCCTCTAGTT 60.417 40.741 0.00 0.00 0.00 2.24
293 294 6.039605 GCTTCGAGTATAGTTTTCCCTCTAGT 59.960 42.308 0.00 0.00 0.00 2.57
294 295 6.440436 GCTTCGAGTATAGTTTTCCCTCTAG 58.560 44.000 0.00 0.00 0.00 2.43
295 296 5.301298 GGCTTCGAGTATAGTTTTCCCTCTA 59.699 44.000 0.00 0.00 0.00 2.43
296 297 4.099727 GGCTTCGAGTATAGTTTTCCCTCT 59.900 45.833 0.00 0.00 0.00 3.69
297 298 4.370049 GGCTTCGAGTATAGTTTTCCCTC 58.630 47.826 0.00 0.00 0.00 4.30
298 299 3.181478 CGGCTTCGAGTATAGTTTTCCCT 60.181 47.826 0.00 0.00 35.61 4.20
299 300 3.121544 CGGCTTCGAGTATAGTTTTCCC 58.878 50.000 0.00 0.00 35.61 3.97
300 301 3.778618 ACGGCTTCGAGTATAGTTTTCC 58.221 45.455 0.00 0.00 37.63 3.13
301 302 5.004535 CAGAACGGCTTCGAGTATAGTTTTC 59.995 44.000 0.00 0.00 37.63 2.29
302 303 4.863131 CAGAACGGCTTCGAGTATAGTTTT 59.137 41.667 0.00 0.00 37.63 2.43
303 304 4.082354 ACAGAACGGCTTCGAGTATAGTTT 60.082 41.667 0.00 0.00 37.63 2.66
304 305 3.442977 ACAGAACGGCTTCGAGTATAGTT 59.557 43.478 0.00 0.00 37.63 2.24
305 306 3.015327 ACAGAACGGCTTCGAGTATAGT 58.985 45.455 0.00 0.00 37.63 2.12
306 307 3.694535 ACAGAACGGCTTCGAGTATAG 57.305 47.619 0.00 0.00 37.63 1.31
307 308 4.497006 GCTAACAGAACGGCTTCGAGTATA 60.497 45.833 0.00 0.00 37.63 1.47
308 309 3.734293 GCTAACAGAACGGCTTCGAGTAT 60.734 47.826 0.00 0.00 37.63 2.12
309 310 2.415090 GCTAACAGAACGGCTTCGAGTA 60.415 50.000 0.00 0.00 37.63 2.59
310 311 1.669211 GCTAACAGAACGGCTTCGAGT 60.669 52.381 0.00 0.00 37.63 4.18
311 312 0.992802 GCTAACAGAACGGCTTCGAG 59.007 55.000 0.00 0.00 37.63 4.04
312 313 0.389426 GGCTAACAGAACGGCTTCGA 60.389 55.000 0.00 0.00 37.63 3.71
313 314 0.669318 TGGCTAACAGAACGGCTTCG 60.669 55.000 0.00 0.00 40.22 3.79
314 315 0.796927 GTGGCTAACAGAACGGCTTC 59.203 55.000 0.00 0.00 0.00 3.86
315 316 0.107831 TGTGGCTAACAGAACGGCTT 59.892 50.000 0.00 0.00 33.78 4.35
316 317 0.107831 TTGTGGCTAACAGAACGGCT 59.892 50.000 0.00 0.00 40.74 5.52
317 318 0.517316 CTTGTGGCTAACAGAACGGC 59.483 55.000 0.00 0.00 40.74 5.68
318 319 2.163818 TCTTGTGGCTAACAGAACGG 57.836 50.000 0.00 0.00 40.74 4.44
319 320 3.607078 GCTTTCTTGTGGCTAACAGAACG 60.607 47.826 0.00 0.00 40.74 3.95
320 321 3.565902 AGCTTTCTTGTGGCTAACAGAAC 59.434 43.478 0.00 0.00 40.74 3.01
321 322 3.820557 AGCTTTCTTGTGGCTAACAGAA 58.179 40.909 0.00 0.00 40.74 3.02
322 323 3.492102 AGCTTTCTTGTGGCTAACAGA 57.508 42.857 0.00 0.00 40.74 3.41
323 324 3.686726 CCTAGCTTTCTTGTGGCTAACAG 59.313 47.826 0.00 0.00 40.74 3.16
324 325 3.326588 TCCTAGCTTTCTTGTGGCTAACA 59.673 43.478 0.00 0.00 37.97 2.41
325 326 3.939066 TCCTAGCTTTCTTGTGGCTAAC 58.061 45.455 0.00 0.00 37.97 2.34
326 327 4.634012 TTCCTAGCTTTCTTGTGGCTAA 57.366 40.909 0.00 0.00 37.97 3.09
327 328 4.286032 TCTTTCCTAGCTTTCTTGTGGCTA 59.714 41.667 0.00 0.00 37.50 3.93
328 329 3.073062 TCTTTCCTAGCTTTCTTGTGGCT 59.927 43.478 0.00 0.00 39.74 4.75
329 330 3.412386 TCTTTCCTAGCTTTCTTGTGGC 58.588 45.455 0.00 0.00 0.00 5.01
330 331 7.174946 TGTTTATCTTTCCTAGCTTTCTTGTGG 59.825 37.037 0.00 0.00 0.00 4.17
331 332 8.099364 TGTTTATCTTTCCTAGCTTTCTTGTG 57.901 34.615 0.00 0.00 0.00 3.33
332 333 8.157476 TCTGTTTATCTTTCCTAGCTTTCTTGT 58.843 33.333 0.00 0.00 0.00 3.16
333 334 8.447053 GTCTGTTTATCTTTCCTAGCTTTCTTG 58.553 37.037 0.00 0.00 0.00 3.02
334 335 8.379331 AGTCTGTTTATCTTTCCTAGCTTTCTT 58.621 33.333 0.00 0.00 0.00 2.52
335 336 7.912719 AGTCTGTTTATCTTTCCTAGCTTTCT 58.087 34.615 0.00 0.00 0.00 2.52
336 337 9.654663 TTAGTCTGTTTATCTTTCCTAGCTTTC 57.345 33.333 0.00 0.00 0.00 2.62
337 338 9.438228 GTTAGTCTGTTTATCTTTCCTAGCTTT 57.562 33.333 0.00 0.00 0.00 3.51
338 339 8.594550 TGTTAGTCTGTTTATCTTTCCTAGCTT 58.405 33.333 0.00 0.00 0.00 3.74
339 340 8.135382 TGTTAGTCTGTTTATCTTTCCTAGCT 57.865 34.615 0.00 0.00 0.00 3.32
340 341 8.251721 TCTGTTAGTCTGTTTATCTTTCCTAGC 58.748 37.037 0.00 0.00 0.00 3.42
341 342 9.796120 CTCTGTTAGTCTGTTTATCTTTCCTAG 57.204 37.037 0.00 0.00 0.00 3.02
342 343 8.750298 CCTCTGTTAGTCTGTTTATCTTTCCTA 58.250 37.037 0.00 0.00 0.00 2.94
343 344 7.616313 CCTCTGTTAGTCTGTTTATCTTTCCT 58.384 38.462 0.00 0.00 0.00 3.36
344 345 6.314152 GCCTCTGTTAGTCTGTTTATCTTTCC 59.686 42.308 0.00 0.00 0.00 3.13
345 346 6.874134 TGCCTCTGTTAGTCTGTTTATCTTTC 59.126 38.462 0.00 0.00 0.00 2.62
346 347 6.769512 TGCCTCTGTTAGTCTGTTTATCTTT 58.230 36.000 0.00 0.00 0.00 2.52
347 348 6.360370 TGCCTCTGTTAGTCTGTTTATCTT 57.640 37.500 0.00 0.00 0.00 2.40
348 349 5.105146 CCTGCCTCTGTTAGTCTGTTTATCT 60.105 44.000 0.00 0.00 0.00 1.98
349 350 5.105310 TCCTGCCTCTGTTAGTCTGTTTATC 60.105 44.000 0.00 0.00 0.00 1.75
350 351 4.777896 TCCTGCCTCTGTTAGTCTGTTTAT 59.222 41.667 0.00 0.00 0.00 1.40
351 352 4.157246 TCCTGCCTCTGTTAGTCTGTTTA 58.843 43.478 0.00 0.00 0.00 2.01
352 353 2.972713 TCCTGCCTCTGTTAGTCTGTTT 59.027 45.455 0.00 0.00 0.00 2.83
353 354 2.609747 TCCTGCCTCTGTTAGTCTGTT 58.390 47.619 0.00 0.00 0.00 3.16
354 355 2.310779 TCCTGCCTCTGTTAGTCTGT 57.689 50.000 0.00 0.00 0.00 3.41
355 356 2.223688 CGATCCTGCCTCTGTTAGTCTG 60.224 54.545 0.00 0.00 0.00 3.51
356 357 2.028130 CGATCCTGCCTCTGTTAGTCT 58.972 52.381 0.00 0.00 0.00 3.24
357 358 1.067821 CCGATCCTGCCTCTGTTAGTC 59.932 57.143 0.00 0.00 0.00 2.59
358 359 1.115467 CCGATCCTGCCTCTGTTAGT 58.885 55.000 0.00 0.00 0.00 2.24
359 360 0.390860 CCCGATCCTGCCTCTGTTAG 59.609 60.000 0.00 0.00 0.00 2.34
360 361 0.325296 ACCCGATCCTGCCTCTGTTA 60.325 55.000 0.00 0.00 0.00 2.41
361 362 1.613630 ACCCGATCCTGCCTCTGTT 60.614 57.895 0.00 0.00 0.00 3.16
362 363 2.039624 ACCCGATCCTGCCTCTGT 59.960 61.111 0.00 0.00 0.00 3.41
363 364 2.818132 GACCCGATCCTGCCTCTG 59.182 66.667 0.00 0.00 0.00 3.35
364 365 2.835431 CGACCCGATCCTGCCTCT 60.835 66.667 0.00 0.00 0.00 3.69
365 366 3.917760 CCGACCCGATCCTGCCTC 61.918 72.222 0.00 0.00 0.00 4.70
369 370 1.682451 TAAAGGCCGACCCGATCCTG 61.682 60.000 0.00 0.00 39.21 3.86
370 371 0.763223 ATAAAGGCCGACCCGATCCT 60.763 55.000 0.00 0.00 39.21 3.24
371 372 0.602905 CATAAAGGCCGACCCGATCC 60.603 60.000 0.00 0.00 39.21 3.36
372 373 0.602905 CCATAAAGGCCGACCCGATC 60.603 60.000 0.00 0.00 39.21 3.69
373 374 1.450211 CCATAAAGGCCGACCCGAT 59.550 57.895 0.00 0.00 39.21 4.18
374 375 2.904905 CCATAAAGGCCGACCCGA 59.095 61.111 0.00 0.00 39.21 5.14
383 384 3.987220 CCTCGTTTTGTTTGCCATAAAGG 59.013 43.478 0.00 0.00 41.84 3.11
384 385 4.865776 TCCTCGTTTTGTTTGCCATAAAG 58.134 39.130 0.00 0.00 0.00 1.85
385 386 4.920640 TCCTCGTTTTGTTTGCCATAAA 57.079 36.364 0.00 0.00 0.00 1.40
386 387 5.226396 CAATCCTCGTTTTGTTTGCCATAA 58.774 37.500 0.00 0.00 0.00 1.90
387 388 4.321601 CCAATCCTCGTTTTGTTTGCCATA 60.322 41.667 0.00 0.00 0.00 2.74
388 389 3.554752 CCAATCCTCGTTTTGTTTGCCAT 60.555 43.478 0.00 0.00 0.00 4.40
389 390 2.223923 CCAATCCTCGTTTTGTTTGCCA 60.224 45.455 0.00 0.00 0.00 4.92
390 391 2.403259 CCAATCCTCGTTTTGTTTGCC 58.597 47.619 0.00 0.00 0.00 4.52
391 392 2.403259 CCCAATCCTCGTTTTGTTTGC 58.597 47.619 0.00 0.00 0.00 3.68
392 393 2.403259 GCCCAATCCTCGTTTTGTTTG 58.597 47.619 0.00 0.00 0.00 2.93
393 394 1.343142 GGCCCAATCCTCGTTTTGTTT 59.657 47.619 0.00 0.00 0.00 2.83
394 395 0.966179 GGCCCAATCCTCGTTTTGTT 59.034 50.000 0.00 0.00 0.00 2.83
395 396 1.241315 CGGCCCAATCCTCGTTTTGT 61.241 55.000 0.00 0.00 0.00 2.83
396 397 1.506262 CGGCCCAATCCTCGTTTTG 59.494 57.895 0.00 0.00 0.00 2.44
397 398 1.677633 CCGGCCCAATCCTCGTTTT 60.678 57.895 0.00 0.00 0.00 2.43
398 399 2.045340 CCGGCCCAATCCTCGTTT 60.045 61.111 0.00 0.00 0.00 3.60
399 400 4.796495 GCCGGCCCAATCCTCGTT 62.796 66.667 18.11 0.00 0.00 3.85
402 403 4.883354 CAGGCCGGCCCAATCCTC 62.883 72.222 41.72 14.89 36.58 3.71
1014 1015 2.094752 CCCTAAAAATTCCGTGTGCAGG 60.095 50.000 0.00 0.00 0.00 4.85
1048 1049 4.397481 TGGATGTGCAAACAACATGAAA 57.603 36.364 0.00 0.00 0.00 2.69
1060 1061 1.546923 CCTGCAGAAAATGGATGTGCA 59.453 47.619 17.39 0.00 41.72 4.57
1068 1069 0.169672 CGCCAGTCCTGCAGAAAATG 59.830 55.000 17.39 12.14 0.00 2.32
1167 1168 0.942962 CAATTCGCATGGAGGAGAGC 59.057 55.000 0.00 0.00 0.00 4.09
1186 1187 6.084326 ACAACATGTACCACAGAATTTTCC 57.916 37.500 0.00 0.00 0.00 3.13
1191 1192 7.001674 TCCTAAAACAACATGTACCACAGAAT 58.998 34.615 0.00 0.00 0.00 2.40
1199 1200 8.519526 TGAATCCAATCCTAAAACAACATGTAC 58.480 33.333 0.00 0.00 0.00 2.90
1204 1205 7.595819 AGTTGAATCCAATCCTAAAACAACA 57.404 32.000 0.00 0.00 37.92 3.33
1205 1206 8.141268 TGAAGTTGAATCCAATCCTAAAACAAC 58.859 33.333 0.00 0.00 34.39 3.32
1206 1207 8.243961 TGAAGTTGAATCCAATCCTAAAACAA 57.756 30.769 0.00 0.00 34.39 2.83
1301 1302 1.065273 CATCCGCTCAGCATTTGGC 59.935 57.895 0.00 0.00 45.30 4.52
1327 1328 3.802675 GCCAGTAGTCAGGAAAGACGTTT 60.803 47.826 0.00 0.00 43.24 3.60
1457 1460 8.347729 TGTATATAGACACATTTTAGCGTGTG 57.652 34.615 0.00 4.13 46.06 3.82
1531 1534 4.992688 TCGGCATTGGCTTAAAAATAGTG 58.007 39.130 8.71 0.00 40.87 2.74
1541 1544 0.813184 CAAGACATCGGCATTGGCTT 59.187 50.000 8.71 0.00 43.25 4.35
1581 1584 7.630082 ACCAGGAAGTTTACATCTAGCAAATA 58.370 34.615 0.00 0.00 0.00 1.40
1774 1787 9.075678 TGCTCTAGTATTGAGTAACCTAATACC 57.924 37.037 0.00 0.00 37.78 2.73
1891 1911 6.597280 ACAAGAAAATGATTCCTAGACAGAGC 59.403 38.462 0.00 0.00 0.00 4.09
2184 2221 2.544486 GCCCTTTCTGACTGCAAAGTTG 60.544 50.000 0.00 0.00 0.00 3.16
2409 2464 2.381911 CCAAACCAGATAAGCAGGCAT 58.618 47.619 0.00 0.00 0.00 4.40
2413 2468 4.272489 TGAATCCCAAACCAGATAAGCAG 58.728 43.478 0.00 0.00 0.00 4.24
2414 2469 4.314522 TGAATCCCAAACCAGATAAGCA 57.685 40.909 0.00 0.00 0.00 3.91
2451 2521 8.519799 TGCCTTCTTTCTTTCTTTCTTTCTTA 57.480 30.769 0.00 0.00 0.00 2.10
2452 2522 7.410120 TGCCTTCTTTCTTTCTTTCTTTCTT 57.590 32.000 0.00 0.00 0.00 2.52
2453 2523 7.340487 TCTTGCCTTCTTTCTTTCTTTCTTTCT 59.660 33.333 0.00 0.00 0.00 2.52
2454 2524 7.484140 TCTTGCCTTCTTTCTTTCTTTCTTTC 58.516 34.615 0.00 0.00 0.00 2.62
2455 2525 7.340487 TCTCTTGCCTTCTTTCTTTCTTTCTTT 59.660 33.333 0.00 0.00 0.00 2.52
2456 2526 6.830838 TCTCTTGCCTTCTTTCTTTCTTTCTT 59.169 34.615 0.00 0.00 0.00 2.52
2457 2527 6.360618 TCTCTTGCCTTCTTTCTTTCTTTCT 58.639 36.000 0.00 0.00 0.00 2.52
2458 2528 6.625873 TCTCTTGCCTTCTTTCTTTCTTTC 57.374 37.500 0.00 0.00 0.00 2.62
2473 2543 2.426842 ACAGCCCTATTTCTCTTGCC 57.573 50.000 0.00 0.00 0.00 4.52
2586 2656 3.861276 TCGACGTGACCAATAGACATT 57.139 42.857 0.00 0.00 0.00 2.71
2611 2686 6.899089 TCTTATCATTAGGAACATGGCTTCA 58.101 36.000 0.00 0.00 0.00 3.02
2657 2732 7.256286 CAACAAGAATGGAGGAAATCTGAATC 58.744 38.462 0.00 0.00 0.00 2.52
2662 2737 4.670765 AGCAACAAGAATGGAGGAAATCT 58.329 39.130 0.00 0.00 0.00 2.40
2825 2900 0.668535 TCCTGCTACGACGATGATGG 59.331 55.000 0.00 0.00 0.00 3.51
3126 3205 1.678269 GACTAGTGCTTCTGCGTGCG 61.678 60.000 0.00 0.00 43.34 5.34
3175 3272 1.071471 CGCAAGGAGGTGGTGTCTT 59.929 57.895 0.00 0.00 0.00 3.01
3178 3275 2.743718 CTCGCAAGGAGGTGGTGT 59.256 61.111 0.00 0.00 39.22 4.16
3187 3284 2.685380 AGGAGACCCCTCGCAAGG 60.685 66.667 0.00 0.00 43.31 3.61
3190 3287 2.798445 TTAGCAGGAGACCCCTCGCA 62.798 60.000 0.00 0.00 45.60 5.10
3192 3289 2.022240 GCTTAGCAGGAGACCCCTCG 62.022 65.000 0.00 0.00 45.60 4.63
3193 3290 1.826709 GCTTAGCAGGAGACCCCTC 59.173 63.158 0.00 0.00 45.60 4.30
3195 3292 2.501610 CGCTTAGCAGGAGACCCC 59.498 66.667 4.70 0.00 0.00 4.95
3439 3572 0.183492 AAGCAACTGAACAGCCTCCA 59.817 50.000 1.46 0.00 0.00 3.86
3481 3614 8.744011 CACCACAACATTTTTAATTTGCAATTG 58.256 29.630 0.00 0.00 0.00 2.32
3482 3615 7.434602 GCACCACAACATTTTTAATTTGCAATT 59.565 29.630 0.00 0.00 0.00 2.32
3483 3616 6.916932 GCACCACAACATTTTTAATTTGCAAT 59.083 30.769 0.00 0.00 0.00 3.56
3484 3617 6.094603 AGCACCACAACATTTTTAATTTGCAA 59.905 30.769 0.00 0.00 0.00 4.08
3485 3618 5.587844 AGCACCACAACATTTTTAATTTGCA 59.412 32.000 0.00 0.00 0.00 4.08
3486 3619 6.058827 AGCACCACAACATTTTTAATTTGC 57.941 33.333 0.00 0.00 0.00 3.68
3517 3650 3.090037 TCTGTAGCCTGAAGTAGTCACC 58.910 50.000 0.00 0.00 31.13 4.02
3530 3663 1.131883 CACAAAGCAGCATCTGTAGCC 59.868 52.381 0.00 0.00 33.43 3.93
3599 3732 8.579850 TTGGTGCTAATAGACAAGATTGAATT 57.420 30.769 0.00 0.00 0.00 2.17
3622 3755 9.449719 ACACTGGAAAGGAAATAGTAATACTTG 57.550 33.333 0.00 0.00 0.00 3.16
3724 3857 2.159338 AGCAAGCAACTTGTGTGTTCAG 60.159 45.455 8.95 0.00 42.77 3.02
3836 3972 1.273048 GCAGCAAAATGATCACCACCA 59.727 47.619 0.00 0.00 0.00 4.17
3838 3974 1.068333 ACGCAGCAAAATGATCACCAC 60.068 47.619 0.00 0.00 0.00 4.16
3857 3993 2.807967 TGTCAGCATAACAAGAGTGCAC 59.192 45.455 9.40 9.40 41.19 4.57
3937 4073 7.448748 AACATGGACCAGAGTTGTTTAATAC 57.551 36.000 12.82 0.00 0.00 1.89
3946 4082 2.371841 TGCAGTAACATGGACCAGAGTT 59.628 45.455 16.57 16.57 0.00 3.01
3951 4087 1.004628 AGCATGCAGTAACATGGACCA 59.995 47.619 21.98 0.00 46.14 4.02
3962 4098 5.726980 TTTTTCAAATCCTAGCATGCAGT 57.273 34.783 21.98 1.90 0.00 4.40
3989 4125 5.533482 TGAGCAGAGACTCAACTAAGAAAC 58.467 41.667 5.02 0.00 43.59 2.78
4010 4148 7.401955 TGTGGTTGCATAACATAAATCATGA 57.598 32.000 0.00 0.00 38.58 3.07
4026 4164 7.651704 ACTTTTGTAAAGATATGTTGTGGTTGC 59.348 33.333 6.20 0.00 0.00 4.17
4089 4232 9.866655 ATATCAGAATTTATTTAGGCCAGAACA 57.133 29.630 5.01 0.00 0.00 3.18
4123 4266 7.971183 AAGTTCCACTTATCTTTCAAGACTC 57.029 36.000 0.00 0.00 36.52 3.36
4196 4339 7.989741 AGAGTATTTGCATTGCTATGTAGTCTT 59.010 33.333 10.49 0.84 34.12 3.01
4284 4427 3.387374 TGGAACATCAACTGCCAAACATT 59.613 39.130 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.