Multiple sequence alignment - TraesCS2A01G162100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G162100 chr2A 100.000 4818 0 0 1 4818 114572040 114567223 0.000000e+00 8898.0
1 TraesCS2A01G162100 chr2B 91.784 3749 136 57 505 4129 163712197 163715897 0.000000e+00 5059.0
2 TraesCS2A01G162100 chr2B 82.955 440 23 18 4317 4708 163715898 163716333 2.760000e-92 350.0
3 TraesCS2A01G162100 chr2B 91.626 203 15 2 1 202 163710286 163710487 3.670000e-71 279.0
4 TraesCS2A01G162100 chr2D 91.512 2321 98 41 505 2763 113049894 113052177 0.000000e+00 3103.0
5 TraesCS2A01G162100 chr2D 93.049 1338 35 24 2830 4129 113052177 113053494 0.000000e+00 1903.0
6 TraesCS2A01G162100 chr2D 83.399 506 40 26 4318 4793 113053486 113053977 3.450000e-116 429.0
7 TraesCS2A01G162100 chr7B 77.219 597 106 23 1981 2565 48853230 48852652 6.020000e-84 322.0
8 TraesCS2A01G162100 chr7A 75.954 603 106 28 1982 2565 98015466 98014884 1.710000e-69 274.0
9 TraesCS2A01G162100 chr7A 91.892 185 15 0 4132 4316 121929668 121929852 4.780000e-65 259.0
10 TraesCS2A01G162100 chr7A 85.377 212 27 2 304 511 509532052 509531841 2.920000e-52 217.0
11 TraesCS2A01G162100 chr7A 85.377 212 26 3 302 508 556289180 556289391 1.050000e-51 215.0
12 TraesCS2A01G162100 chr7A 80.000 105 18 3 4714 4818 230892628 230892729 1.860000e-09 75.0
13 TraesCS2A01G162100 chr3A 92.935 184 13 0 4132 4315 703893409 703893226 7.950000e-68 268.0
14 TraesCS2A01G162100 chr3A 92.818 181 13 0 4137 4317 36477761 36477581 3.700000e-66 263.0
15 TraesCS2A01G162100 chr3A 85.915 213 22 6 303 508 627790305 627790094 2.260000e-53 220.0
16 TraesCS2A01G162100 chr5A 92.021 188 15 0 4132 4319 458197100 458197287 1.030000e-66 265.0
17 TraesCS2A01G162100 chr5A 84.906 212 25 4 304 509 33132176 33131966 1.760000e-49 207.0
18 TraesCS2A01G162100 chr6A 92.391 184 14 0 4132 4315 584909045 584908862 3.700000e-66 263.0
19 TraesCS2A01G162100 chr6A 89.637 193 20 0 4130 4322 4043513 4043705 3.720000e-61 246.0
20 TraesCS2A01G162100 chr6A 85.238 210 26 3 304 508 86280008 86279799 1.360000e-50 211.0
21 TraesCS2A01G162100 chr6A 84.834 211 28 4 303 510 501926586 501926377 4.890000e-50 209.0
22 TraesCS2A01G162100 chr6A 78.667 150 26 6 4669 4815 590091612 590091758 1.430000e-15 95.3
23 TraesCS2A01G162100 chr5D 92.265 181 14 0 4135 4315 381562184 381562004 1.720000e-64 257.0
24 TraesCS2A01G162100 chr5D 91.758 182 15 0 4132 4313 51999121 51999302 2.230000e-63 254.0
25 TraesCS2A01G162100 chr5D 91.351 185 14 1 4132 4316 544792787 544792969 8.000000e-63 252.0
26 TraesCS2A01G162100 chr7D 76.436 505 92 21 1985 2478 94642516 94642028 1.040000e-61 248.0
27 TraesCS2A01G162100 chr7D 80.000 105 17 4 4714 4818 218180256 218180356 1.860000e-09 75.0
28 TraesCS2A01G162100 chr4A 86.730 211 22 5 304 508 602738472 602738682 3.750000e-56 230.0
29 TraesCS2A01G162100 chr4A 86.603 209 23 3 305 508 563306234 563306442 4.850000e-55 226.0
30 TraesCS2A01G162100 chr4A 85.446 213 24 7 1 208 742428595 742428805 1.050000e-51 215.0
31 TraesCS2A01G162100 chr1A 85.238 210 26 3 304 508 402617218 402617427 1.360000e-50 211.0
32 TraesCS2A01G162100 chrUn 79.503 161 25 6 44 198 108496787 108496629 1.830000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G162100 chr2A 114567223 114572040 4817 True 8898.000000 8898 100.000000 1 4818 1 chr2A.!!$R1 4817
1 TraesCS2A01G162100 chr2B 163710286 163716333 6047 False 1896.000000 5059 88.788333 1 4708 3 chr2B.!!$F1 4707
2 TraesCS2A01G162100 chr2D 113049894 113053977 4083 False 1811.666667 3103 89.320000 505 4793 3 chr2D.!!$F1 4288
3 TraesCS2A01G162100 chr7B 48852652 48853230 578 True 322.000000 322 77.219000 1981 2565 1 chr7B.!!$R1 584
4 TraesCS2A01G162100 chr7A 98014884 98015466 582 True 274.000000 274 75.954000 1982 2565 1 chr7A.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 400 0.108329 CCCGTCTACGTGGCTTGATT 60.108 55.0 0.00 0.00 37.74 2.57 F
1608 3069 0.179108 GGAATCGTTCGTCTCTGGGG 60.179 60.0 0.00 0.00 0.00 4.96 F
2771 4302 0.248012 TGTAAATTCGGCGCCTCTGA 59.752 50.0 26.68 12.15 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 3551 0.104855 TGGCGGATTCATCTTCCTCG 59.895 55.0 0.0 0.0 0.00 4.63 R
2951 4485 0.035915 GCTTCTTGGGGGAGACACTC 60.036 60.0 0.0 0.0 0.00 3.51 R
4710 6356 0.110373 GATCGGGCGTTGTGTGAAAC 60.110 55.0 0.0 0.0 37.35 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.597288 AATAGGGATAGTTTATTTTGGTGCC 57.403 36.000 0.00 0.00 0.00 5.01
38 39 0.955905 TTTGGTGCCGCTAGGTTTTC 59.044 50.000 0.00 0.00 40.50 2.29
58 59 2.026729 TCACCCCATAGCATTCGTTTCA 60.027 45.455 0.00 0.00 0.00 2.69
68 69 1.198867 CATTCGTTTCAATGACGGGCA 59.801 47.619 0.00 0.00 40.70 5.36
78 79 4.114997 GACGGGCAAATGCGGTGG 62.115 66.667 5.60 0.00 43.26 4.61
88 89 2.556622 CAAATGCGGTGGGTTTTCTAGT 59.443 45.455 0.00 0.00 0.00 2.57
121 122 1.144093 TCGCTTTCCCTTCTTTTCCCA 59.856 47.619 0.00 0.00 0.00 4.37
135 136 7.256439 CCTTCTTTTCCCATTTCCTGAATTCTT 60.256 37.037 7.05 0.00 0.00 2.52
141 142 8.434589 TTCCCATTTCCTGAATTCTTTGTAAT 57.565 30.769 7.05 0.00 0.00 1.89
146 147 9.294030 CATTTCCTGAATTCTTTGTAATACTGC 57.706 33.333 7.05 0.00 0.00 4.40
150 151 7.665559 TCCTGAATTCTTTGTAATACTGCTGTT 59.334 33.333 7.05 0.00 0.00 3.16
164 165 3.058224 ACTGCTGTTTTTCCGTTCTATGC 60.058 43.478 0.00 0.00 0.00 3.14
172 174 6.980978 TGTTTTTCCGTTCTATGCAATGAAAA 59.019 30.769 6.36 0.00 0.00 2.29
189 191 0.408309 AAAGGGGTTAGCCTGGTTCC 59.592 55.000 0.00 0.00 34.45 3.62
262 297 9.293404 AGTAGTATTTCCCAGTTAAAAAGGAAC 57.707 33.333 1.79 0.00 38.10 3.62
294 329 4.789629 CACAAGATGCACACAAACATATCG 59.210 41.667 0.00 0.00 0.00 2.92
295 330 4.694982 ACAAGATGCACACAAACATATCGA 59.305 37.500 0.00 0.00 0.00 3.59
296 331 5.355071 ACAAGATGCACACAAACATATCGAT 59.645 36.000 2.16 2.16 0.00 3.59
298 333 6.052840 AGATGCACACAAACATATCGATTC 57.947 37.500 1.71 0.00 0.00 2.52
299 334 5.585844 AGATGCACACAAACATATCGATTCA 59.414 36.000 1.71 0.00 0.00 2.57
300 335 4.968626 TGCACACAAACATATCGATTCAC 58.031 39.130 1.71 0.00 0.00 3.18
301 336 4.021822 GCACACAAACATATCGATTCACG 58.978 43.478 1.71 0.00 44.09 4.35
302 337 4.577639 CACACAAACATATCGATTCACGG 58.422 43.478 1.71 0.00 42.82 4.94
303 338 3.621268 ACACAAACATATCGATTCACGGG 59.379 43.478 1.71 0.00 42.82 5.28
304 339 3.002246 CACAAACATATCGATTCACGGGG 59.998 47.826 1.71 0.00 42.82 5.73
306 341 2.814280 ACATATCGATTCACGGGGAC 57.186 50.000 1.71 0.00 42.82 4.46
318 353 4.447734 GGGGACGAGACTTACCCA 57.552 61.111 0.00 0.00 43.67 4.51
319 354 1.895966 GGGGACGAGACTTACCCAC 59.104 63.158 0.00 0.00 43.67 4.61
320 355 0.614134 GGGGACGAGACTTACCCACT 60.614 60.000 0.00 0.00 43.67 4.00
322 357 0.816373 GGACGAGACTTACCCACTCC 59.184 60.000 0.00 0.00 0.00 3.85
323 358 0.816373 GACGAGACTTACCCACTCCC 59.184 60.000 0.00 0.00 0.00 4.30
324 359 0.614134 ACGAGACTTACCCACTCCCC 60.614 60.000 0.00 0.00 0.00 4.81
326 361 1.305887 AGACTTACCCACTCCCCCG 60.306 63.158 0.00 0.00 0.00 5.73
329 364 2.681064 TTACCCACTCCCCCGTCG 60.681 66.667 0.00 0.00 0.00 5.12
330 365 3.528217 TTACCCACTCCCCCGTCGT 62.528 63.158 0.00 0.00 0.00 4.34
333 368 4.373116 CCACTCCCCCGTCGTGTG 62.373 72.222 0.00 0.00 0.00 3.82
343 378 3.118454 GTCGTGTGCCCATCCGTG 61.118 66.667 0.00 0.00 0.00 4.94
346 381 3.127533 GTGTGCCCATCCGTGCTC 61.128 66.667 0.00 0.00 0.00 4.26
347 382 4.408821 TGTGCCCATCCGTGCTCC 62.409 66.667 0.00 0.00 0.00 4.70
351 386 4.530857 CCCATCCGTGCTCCCGTC 62.531 72.222 0.00 0.00 0.00 4.79
352 387 3.461773 CCATCCGTGCTCCCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
353 388 2.125326 CCATCCGTGCTCCCGTCTA 61.125 63.158 0.00 0.00 0.00 2.59
354 389 1.065928 CATCCGTGCTCCCGTCTAC 59.934 63.158 0.00 0.00 0.00 2.59
355 390 2.478890 ATCCGTGCTCCCGTCTACG 61.479 63.158 0.00 0.00 39.44 3.51
356 391 3.437795 CCGTGCTCCCGTCTACGT 61.438 66.667 1.41 0.00 37.74 3.57
357 392 2.202440 CGTGCTCCCGTCTACGTG 60.202 66.667 0.00 0.00 37.74 4.49
358 393 2.181021 GTGCTCCCGTCTACGTGG 59.819 66.667 0.00 0.00 37.74 4.94
359 394 3.755628 TGCTCCCGTCTACGTGGC 61.756 66.667 0.00 3.68 37.74 5.01
360 395 3.450115 GCTCCCGTCTACGTGGCT 61.450 66.667 0.00 0.00 37.74 4.75
361 396 3.003113 GCTCCCGTCTACGTGGCTT 62.003 63.158 0.00 0.00 37.74 4.35
362 397 1.153823 CTCCCGTCTACGTGGCTTG 60.154 63.158 0.00 0.00 37.74 4.01
363 398 1.592400 CTCCCGTCTACGTGGCTTGA 61.592 60.000 0.00 0.00 37.74 3.02
364 399 0.968901 TCCCGTCTACGTGGCTTGAT 60.969 55.000 0.00 0.00 37.74 2.57
365 400 0.108329 CCCGTCTACGTGGCTTGATT 60.108 55.000 0.00 0.00 37.74 2.57
366 401 1.674817 CCCGTCTACGTGGCTTGATTT 60.675 52.381 0.00 0.00 37.74 2.17
367 402 2.417651 CCCGTCTACGTGGCTTGATTTA 60.418 50.000 0.00 0.00 37.74 1.40
368 403 3.255725 CCGTCTACGTGGCTTGATTTAA 58.744 45.455 0.00 0.00 37.74 1.52
369 404 3.869246 CCGTCTACGTGGCTTGATTTAAT 59.131 43.478 0.00 0.00 37.74 1.40
371 406 5.255596 CGTCTACGTGGCTTGATTTAATTG 58.744 41.667 0.00 0.00 34.11 2.32
373 408 5.353123 GTCTACGTGGCTTGATTTAATTGGA 59.647 40.000 0.00 0.00 0.00 3.53
374 409 5.941058 TCTACGTGGCTTGATTTAATTGGAA 59.059 36.000 0.00 0.00 0.00 3.53
375 410 4.805219 ACGTGGCTTGATTTAATTGGAAC 58.195 39.130 0.00 0.00 0.00 3.62
376 411 4.279671 ACGTGGCTTGATTTAATTGGAACA 59.720 37.500 0.00 0.00 0.00 3.18
391 426 3.462775 TGGAACAAAATAAGGCTCGGCC 61.463 50.000 6.80 6.80 43.28 6.13
400 435 3.483869 GGCTCGGCCCCATCTTCT 61.484 66.667 0.00 0.00 44.06 2.85
404 439 1.408266 GCTCGGCCCCATCTTCTTAAA 60.408 52.381 0.00 0.00 0.00 1.52
406 441 3.555966 CTCGGCCCCATCTTCTTAAAAT 58.444 45.455 0.00 0.00 0.00 1.82
408 443 5.118729 TCGGCCCCATCTTCTTAAAATTA 57.881 39.130 0.00 0.00 0.00 1.40
409 444 5.511363 TCGGCCCCATCTTCTTAAAATTAA 58.489 37.500 0.00 0.00 0.00 1.40
410 445 5.592688 TCGGCCCCATCTTCTTAAAATTAAG 59.407 40.000 0.00 6.59 41.10 1.85
411 446 5.221244 CGGCCCCATCTTCTTAAAATTAAGG 60.221 44.000 11.83 0.00 40.35 2.69
412 447 5.070446 GGCCCCATCTTCTTAAAATTAAGGG 59.930 44.000 11.83 6.47 40.35 3.95
413 448 5.070446 GCCCCATCTTCTTAAAATTAAGGGG 59.930 44.000 15.44 15.44 40.35 4.79
414 449 6.440354 CCCCATCTTCTTAAAATTAAGGGGA 58.560 40.000 18.31 13.84 38.47 4.81
415 450 6.551227 CCCCATCTTCTTAAAATTAAGGGGAG 59.449 42.308 18.31 12.08 38.47 4.30
416 451 7.354312 CCCATCTTCTTAAAATTAAGGGGAGA 58.646 38.462 14.28 13.32 38.47 3.71
417 452 7.285629 CCCATCTTCTTAAAATTAAGGGGAGAC 59.714 40.741 14.28 0.00 38.47 3.36
418 453 7.012421 CCATCTTCTTAAAATTAAGGGGAGACG 59.988 40.741 11.83 6.89 40.35 4.18
419 454 7.248743 TCTTCTTAAAATTAAGGGGAGACGA 57.751 36.000 11.83 0.00 40.35 4.20
421 456 8.326529 TCTTCTTAAAATTAAGGGGAGACGATT 58.673 33.333 11.83 0.00 40.35 3.34
422 457 9.609346 CTTCTTAAAATTAAGGGGAGACGATTA 57.391 33.333 11.83 0.00 40.35 1.75
423 458 9.609346 TTCTTAAAATTAAGGGGAGACGATTAG 57.391 33.333 11.83 0.00 40.35 1.73
424 459 8.984855 TCTTAAAATTAAGGGGAGACGATTAGA 58.015 33.333 11.83 0.00 40.35 2.10
425 460 9.780186 CTTAAAATTAAGGGGAGACGATTAGAT 57.220 33.333 5.23 0.00 37.16 1.98
432 467 9.609346 TTAAGGGGAGACGATTAGATTAAAAAG 57.391 33.333 0.00 0.00 0.00 2.27
467 1430 5.684550 AAACCGTAGAATGAAGTGGAAAC 57.315 39.130 0.00 0.00 0.00 2.78
483 1446 5.089970 TGGAAACACAGATGAGAGTATGG 57.910 43.478 0.00 0.00 33.40 2.74
486 1449 5.338381 GGAAACACAGATGAGAGTATGGGAA 60.338 44.000 0.00 0.00 0.00 3.97
487 1450 5.350504 AACACAGATGAGAGTATGGGAAG 57.649 43.478 0.00 0.00 0.00 3.46
489 1452 4.648762 ACACAGATGAGAGTATGGGAAGAG 59.351 45.833 0.00 0.00 0.00 2.85
490 1453 4.892345 CACAGATGAGAGTATGGGAAGAGA 59.108 45.833 0.00 0.00 0.00 3.10
495 1458 3.703556 TGAGAGTATGGGAAGAGAGCAAG 59.296 47.826 0.00 0.00 0.00 4.01
496 1459 2.433970 AGAGTATGGGAAGAGAGCAAGC 59.566 50.000 0.00 0.00 0.00 4.01
498 1461 2.573462 AGTATGGGAAGAGAGCAAGCAA 59.427 45.455 0.00 0.00 0.00 3.91
499 1462 2.125773 ATGGGAAGAGAGCAAGCAAG 57.874 50.000 0.00 0.00 0.00 4.01
500 1463 0.607489 TGGGAAGAGAGCAAGCAAGC 60.607 55.000 0.00 0.00 0.00 4.01
501 1464 1.311651 GGGAAGAGAGCAAGCAAGCC 61.312 60.000 0.00 0.00 34.23 4.35
503 1466 1.642952 GAAGAGAGCAAGCAAGCCGG 61.643 60.000 0.00 0.00 34.23 6.13
507 1919 2.439156 AGCAAGCAAGCCGGATCC 60.439 61.111 5.05 0.00 34.23 3.36
511 1923 0.819582 CAAGCAAGCCGGATCCATTT 59.180 50.000 13.41 0.00 0.00 2.32
632 2047 2.814341 CACTCGCAGCAGCAGAGG 60.814 66.667 20.48 10.37 42.02 3.69
640 2055 1.724429 CAGCAGCAGAGGAGAGAAAC 58.276 55.000 0.00 0.00 0.00 2.78
641 2056 0.246086 AGCAGCAGAGGAGAGAAACG 59.754 55.000 0.00 0.00 0.00 3.60
642 2057 0.739112 GCAGCAGAGGAGAGAAACGG 60.739 60.000 0.00 0.00 0.00 4.44
643 2058 0.739112 CAGCAGAGGAGAGAAACGGC 60.739 60.000 0.00 0.00 0.00 5.68
644 2059 1.188219 AGCAGAGGAGAGAAACGGCA 61.188 55.000 0.00 0.00 0.00 5.69
665 2080 2.256461 GTAACGGACACGGACGCT 59.744 61.111 0.00 0.00 46.48 5.07
725 2140 1.283381 TTCAAATACCGGGGGAGGGG 61.283 60.000 6.32 0.00 35.02 4.79
726 2141 1.694882 CAAATACCGGGGGAGGGGA 60.695 63.158 6.32 0.00 35.02 4.81
727 2142 1.385489 AAATACCGGGGGAGGGGAG 60.385 63.158 6.32 0.00 35.02 4.30
1056 2497 3.782443 CACCCCCACCGAGGTAGC 61.782 72.222 0.00 0.00 33.52 3.58
1472 2933 1.350193 CAGTACTAGTTGCGTGCTGG 58.650 55.000 0.00 0.00 40.14 4.85
1521 2982 0.872388 AACGATTTCGGGCTGTGTTC 59.128 50.000 4.84 0.00 44.95 3.18
1533 2994 0.231279 CTGTGTTCCCGTTTCGTTCG 59.769 55.000 0.00 0.00 0.00 3.95
1556 3017 1.880027 GATTTGGGCTTCGGCGATTAT 59.120 47.619 11.76 0.00 42.91 1.28
1575 3036 8.842777 GCGATTATTAGATCTCTCGAGTTTTAC 58.157 37.037 13.13 2.14 0.00 2.01
1598 3059 0.810426 GCCTCCTTCGGGAATCGTTC 60.810 60.000 0.00 0.00 44.53 3.95
1608 3069 0.179108 GGAATCGTTCGTCTCTGGGG 60.179 60.000 0.00 0.00 0.00 4.96
1694 3155 1.206849 TGGTGAGATATGTGCGCAGAA 59.793 47.619 12.22 1.62 0.00 3.02
1696 3157 3.069443 TGGTGAGATATGTGCGCAGAATA 59.931 43.478 12.22 13.05 0.00 1.75
1697 3158 3.430218 GGTGAGATATGTGCGCAGAATAC 59.570 47.826 12.22 5.15 0.00 1.89
1814 3275 1.081242 GTTGATGTGCTGTTGGGCG 60.081 57.895 0.00 0.00 34.52 6.13
1815 3276 1.228094 TTGATGTGCTGTTGGGCGA 60.228 52.632 0.00 0.00 34.52 5.54
2065 3551 4.792804 GCAGCTGGAGGTGAGGCC 62.793 72.222 17.12 0.00 45.66 5.19
2142 3628 1.742761 TATCAGGTGCTGCTTTCTGC 58.257 50.000 0.00 0.00 43.25 4.26
2185 3677 6.252869 CAGAACAGAAACATGCTGATTAATGC 59.747 38.462 5.90 0.00 36.86 3.56
2191 3685 1.338973 CATGCTGATTAATGCGCCCTT 59.661 47.619 4.18 0.38 0.00 3.95
2218 3712 4.607778 CGATCTGCGATATTGCAAACTGAG 60.608 45.833 18.27 6.22 45.74 3.35
2247 3741 5.123227 TGTTATGCATTGCTAGTAAGGACC 58.877 41.667 3.54 0.00 0.00 4.46
2523 4031 9.366216 CAACTATTAAATAGGCCTTTGTTTTCC 57.634 33.333 12.58 0.00 37.18 3.13
2565 4073 3.775316 AGTGGGATTTAGGTAGTCAGGTG 59.225 47.826 0.00 0.00 0.00 4.00
2566 4074 3.773119 GTGGGATTTAGGTAGTCAGGTGA 59.227 47.826 0.00 0.00 0.00 4.02
2567 4075 4.030913 TGGGATTTAGGTAGTCAGGTGAG 58.969 47.826 0.00 0.00 0.00 3.51
2569 4077 5.206587 GGGATTTAGGTAGTCAGGTGAGTA 58.793 45.833 0.00 0.00 0.00 2.59
2570 4078 5.068855 GGGATTTAGGTAGTCAGGTGAGTAC 59.931 48.000 14.28 14.28 45.60 2.73
2571 4079 5.892686 GGATTTAGGTAGTCAGGTGAGTACT 59.107 44.000 19.63 0.00 45.61 2.73
2572 4080 6.039605 GGATTTAGGTAGTCAGGTGAGTACTC 59.960 46.154 16.32 16.32 45.61 2.59
2771 4302 0.248012 TGTAAATTCGGCGCCTCTGA 59.752 50.000 26.68 12.15 0.00 3.27
2816 4347 6.967135 TGCATACTGTAGTAAGGACTAATCG 58.033 40.000 0.00 0.00 39.91 3.34
2901 4435 5.238214 AGAGCTCAGTCTGATTTTGTCAAAC 59.762 40.000 17.77 0.00 36.14 2.93
2951 4485 0.891373 TCTCCTTTGCTGAGGACGAG 59.109 55.000 4.74 0.00 40.87 4.18
3248 4782 1.339824 CCAGCTCTGAATGGAGTGCTT 60.340 52.381 3.08 0.00 40.07 3.91
3249 4783 2.093288 CCAGCTCTGAATGGAGTGCTTA 60.093 50.000 3.08 0.00 40.07 3.09
3564 5102 0.240145 TGGTCTAACAGCGACGACAG 59.760 55.000 0.00 0.00 32.24 3.51
3567 5105 0.312729 TCTAACAGCGACGACAGCAA 59.687 50.000 0.00 0.00 37.01 3.91
3737 5284 2.293399 GCGATTGAACTTCTGGTTTGGT 59.707 45.455 0.00 0.00 38.41 3.67
3785 5333 1.979155 GTGCTGCTTCCCCTTTCCC 60.979 63.158 0.00 0.00 0.00 3.97
3859 5415 1.852067 AACGTTGATGGCTCGTTGGC 61.852 55.000 0.00 0.00 44.18 4.52
3868 5424 2.870161 CTCGTTGGCTCGTCGTCG 60.870 66.667 0.00 0.00 38.55 5.12
3903 5462 5.288804 AGTTAACAACAATTGGTGTGCATC 58.711 37.500 28.99 18.37 46.84 3.91
3905 5464 3.648339 ACAACAATTGGTGTGCATCTC 57.352 42.857 27.86 0.00 45.59 2.75
3939 5498 1.231928 GGGTTGGGTTGGTTGGTCT 59.768 57.895 0.00 0.00 0.00 3.85
3991 5550 1.876322 CTGCGGGATCTTGGATTCTC 58.124 55.000 0.00 0.00 0.00 2.87
4028 5587 1.519455 CGTCTCGGATGCCCTGTTC 60.519 63.158 0.00 0.00 0.00 3.18
4031 5590 1.519455 CTCGGATGCCCTGTTCGTC 60.519 63.158 0.00 0.00 0.00 4.20
4032 5591 2.511600 CGGATGCCCTGTTCGTCC 60.512 66.667 0.00 0.00 36.51 4.79
4035 5594 1.375523 GATGCCCTGTTCGTCCGTT 60.376 57.895 0.00 0.00 0.00 4.44
4037 5596 2.741211 GCCCTGTTCGTCCGTTCC 60.741 66.667 0.00 0.00 0.00 3.62
4117 5701 0.107848 CAGATTGTACCGTGACCCCC 60.108 60.000 0.00 0.00 0.00 5.40
4118 5702 0.545787 AGATTGTACCGTGACCCCCA 60.546 55.000 0.00 0.00 0.00 4.96
4119 5703 0.107848 GATTGTACCGTGACCCCCAG 60.108 60.000 0.00 0.00 0.00 4.45
4120 5704 2.193087 ATTGTACCGTGACCCCCAGC 62.193 60.000 0.00 0.00 0.00 4.85
4121 5705 3.001406 GTACCGTGACCCCCAGCT 61.001 66.667 0.00 0.00 0.00 4.24
4122 5706 2.203877 TACCGTGACCCCCAGCTT 60.204 61.111 0.00 0.00 0.00 3.74
4123 5707 1.844289 TACCGTGACCCCCAGCTTT 60.844 57.895 0.00 0.00 0.00 3.51
4124 5708 1.833787 TACCGTGACCCCCAGCTTTC 61.834 60.000 0.00 0.00 0.00 2.62
4125 5709 2.750350 CGTGACCCCCAGCTTTCT 59.250 61.111 0.00 0.00 0.00 2.52
4126 5710 1.376037 CGTGACCCCCAGCTTTCTC 60.376 63.158 0.00 0.00 0.00 2.87
4127 5711 1.831652 CGTGACCCCCAGCTTTCTCT 61.832 60.000 0.00 0.00 0.00 3.10
4128 5712 0.035915 GTGACCCCCAGCTTTCTCTC 60.036 60.000 0.00 0.00 0.00 3.20
4129 5713 1.219393 GACCCCCAGCTTTCTCTCG 59.781 63.158 0.00 0.00 0.00 4.04
4130 5714 2.124942 CCCCCAGCTTTCTCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
4131 5715 2.510238 CCCCAGCTTTCTCTCGCG 60.510 66.667 0.00 0.00 0.00 5.87
4132 5716 2.510238 CCCAGCTTTCTCTCGCGG 60.510 66.667 6.13 0.00 0.00 6.46
4133 5717 2.510238 CCAGCTTTCTCTCGCGGG 60.510 66.667 6.13 1.01 35.29 6.13
4134 5718 2.262915 CAGCTTTCTCTCGCGGGT 59.737 61.111 5.57 0.00 0.00 5.28
4135 5719 2.097038 CAGCTTTCTCTCGCGGGTG 61.097 63.158 5.57 2.90 0.00 4.61
4136 5720 2.048127 GCTTTCTCTCGCGGGTGT 60.048 61.111 5.57 0.00 0.00 4.16
4137 5721 2.383527 GCTTTCTCTCGCGGGTGTG 61.384 63.158 5.57 0.00 0.00 3.82
4138 5722 1.006102 CTTTCTCTCGCGGGTGTGT 60.006 57.895 5.57 0.00 0.00 3.72
4139 5723 1.006571 TTTCTCTCGCGGGTGTGTC 60.007 57.895 5.57 0.00 0.00 3.67
4140 5724 1.461091 TTTCTCTCGCGGGTGTGTCT 61.461 55.000 5.57 0.00 0.00 3.41
4141 5725 0.607217 TTCTCTCGCGGGTGTGTCTA 60.607 55.000 5.57 0.00 0.00 2.59
4142 5726 1.025113 TCTCTCGCGGGTGTGTCTAG 61.025 60.000 5.57 0.00 0.00 2.43
4143 5727 1.994507 CTCTCGCGGGTGTGTCTAGG 61.995 65.000 5.57 0.00 0.00 3.02
4144 5728 3.701604 CTCGCGGGTGTGTCTAGGC 62.702 68.421 6.13 0.00 0.00 3.93
4145 5729 4.814294 CGCGGGTGTGTCTAGGCC 62.814 72.222 0.00 0.00 0.00 5.19
4146 5730 3.702048 GCGGGTGTGTCTAGGCCA 61.702 66.667 5.01 0.00 0.00 5.36
4147 5731 2.264794 CGGGTGTGTCTAGGCCAC 59.735 66.667 5.01 7.25 0.00 5.01
4148 5732 2.579657 CGGGTGTGTCTAGGCCACA 61.580 63.158 5.01 13.02 40.35 4.17
4149 5733 1.899437 CGGGTGTGTCTAGGCCACAT 61.899 60.000 15.98 0.00 44.03 3.21
4150 5734 0.107654 GGGTGTGTCTAGGCCACATC 60.108 60.000 15.98 15.33 44.03 3.06
4151 5735 0.905357 GGTGTGTCTAGGCCACATCT 59.095 55.000 15.98 0.00 44.03 2.90
4152 5736 2.108168 GGTGTGTCTAGGCCACATCTA 58.892 52.381 15.98 0.00 44.03 1.98
4153 5737 2.101582 GGTGTGTCTAGGCCACATCTAG 59.898 54.545 15.98 0.00 44.03 2.43
4154 5738 3.024547 GTGTGTCTAGGCCACATCTAGA 58.975 50.000 15.98 0.00 44.03 2.43
4155 5739 3.639094 GTGTGTCTAGGCCACATCTAGAT 59.361 47.826 15.98 0.00 44.03 1.98
4156 5740 3.638627 TGTGTCTAGGCCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
4182 5766 8.146479 TGCTCTAGTTATTGCACATCTAAATG 57.854 34.615 0.00 0.00 38.93 2.32
4183 5767 7.986889 TGCTCTAGTTATTGCACATCTAAATGA 59.013 33.333 0.00 0.00 36.67 2.57
4184 5768 8.494347 GCTCTAGTTATTGCACATCTAAATGAG 58.506 37.037 0.00 0.00 36.67 2.90
4185 5769 9.539825 CTCTAGTTATTGCACATCTAAATGAGT 57.460 33.333 0.00 0.00 36.67 3.41
4186 5770 9.317936 TCTAGTTATTGCACATCTAAATGAGTG 57.682 33.333 0.00 0.00 36.67 3.51
4187 5771 9.317936 CTAGTTATTGCACATCTAAATGAGTGA 57.682 33.333 0.00 0.00 36.67 3.41
4188 5772 8.206325 AGTTATTGCACATCTAAATGAGTGAG 57.794 34.615 0.00 0.00 36.67 3.51
4189 5773 7.826252 AGTTATTGCACATCTAAATGAGTGAGT 59.174 33.333 0.00 0.00 36.67 3.41
4190 5774 8.454106 GTTATTGCACATCTAAATGAGTGAGTT 58.546 33.333 0.00 0.00 36.67 3.01
4191 5775 9.665719 TTATTGCACATCTAAATGAGTGAGTTA 57.334 29.630 0.00 0.00 36.67 2.24
4192 5776 7.977789 TTGCACATCTAAATGAGTGAGTTAA 57.022 32.000 0.00 0.00 36.67 2.01
4193 5777 7.601073 TGCACATCTAAATGAGTGAGTTAAG 57.399 36.000 0.00 0.00 36.67 1.85
4194 5778 7.161404 TGCACATCTAAATGAGTGAGTTAAGT 58.839 34.615 0.00 0.00 36.67 2.24
4195 5779 8.311109 TGCACATCTAAATGAGTGAGTTAAGTA 58.689 33.333 0.00 0.00 36.67 2.24
4196 5780 9.319143 GCACATCTAAATGAGTGAGTTAAGTAT 57.681 33.333 0.00 0.00 36.67 2.12
4312 5896 9.226345 GCACATCTAGATATGCTTTAACAAAAC 57.774 33.333 25.39 0.00 38.16 2.43
4322 5906 5.806286 TGCTTTAACAAAACTGTTCTCTCG 58.194 37.500 0.00 0.00 33.59 4.04
4408 6014 2.251371 GAACAAGTTCGCGGTGCC 59.749 61.111 6.13 0.00 0.00 5.01
4409 6015 2.203153 AACAAGTTCGCGGTGCCT 60.203 55.556 6.13 0.00 0.00 4.75
4410 6016 0.947180 GAACAAGTTCGCGGTGCCTA 60.947 55.000 6.13 0.00 0.00 3.93
4411 6017 1.226030 AACAAGTTCGCGGTGCCTAC 61.226 55.000 6.13 0.00 0.00 3.18
4412 6018 1.666553 CAAGTTCGCGGTGCCTACA 60.667 57.895 6.13 0.00 0.00 2.74
4418 6030 3.127533 GCGGTGCCTACAAGCTGG 61.128 66.667 0.00 0.00 0.00 4.85
4453 6067 0.940126 GCATGTAGATGGGAGTTGCG 59.060 55.000 1.57 0.00 0.00 4.85
4463 6077 0.392461 GGGAGTTGCGCCTTGTGATA 60.392 55.000 4.18 0.00 0.00 2.15
4588 6202 8.156820 ACGGGTATTTCTCATCATGATGAATAA 58.843 33.333 32.38 27.50 46.10 1.40
4594 6208 6.752285 TCTCATCATGATGAATAACTCCCA 57.248 37.500 32.38 11.88 46.10 4.37
4603 6217 5.667172 TGATGAATAACTCCCAGATCTCCAA 59.333 40.000 0.00 0.00 0.00 3.53
4609 6243 4.000928 ACTCCCAGATCTCCAAGTACAT 57.999 45.455 0.00 0.00 0.00 2.29
4610 6244 3.708631 ACTCCCAGATCTCCAAGTACATG 59.291 47.826 0.00 0.00 0.00 3.21
4612 6246 3.706594 TCCCAGATCTCCAAGTACATGAC 59.293 47.826 0.00 0.00 0.00 3.06
4620 6254 2.094700 TCCAAGTACATGACGAGTCTGC 60.095 50.000 0.00 0.00 0.00 4.26
4624 6258 0.450583 TACATGACGAGTCTGCGGAC 59.549 55.000 18.39 18.39 42.41 4.79
4630 6264 0.170561 ACGAGTCTGCGGACATGTAC 59.829 55.000 27.02 0.00 44.36 2.90
4708 6354 6.150976 TGCATAGCAATAGCAAGTTAAAGTGT 59.849 34.615 0.00 0.00 45.49 3.55
4710 6356 5.376854 AGCAATAGCAAGTTAAAGTGTGG 57.623 39.130 0.00 0.00 45.49 4.17
4731 6381 0.321210 TTCACACAACGCCCGATCAT 60.321 50.000 0.00 0.00 0.00 2.45
4733 6383 1.138069 TCACACAACGCCCGATCATAT 59.862 47.619 0.00 0.00 0.00 1.78
4734 6384 2.362717 TCACACAACGCCCGATCATATA 59.637 45.455 0.00 0.00 0.00 0.86
4735 6385 3.127589 CACACAACGCCCGATCATATAA 58.872 45.455 0.00 0.00 0.00 0.98
4736 6386 3.059868 CACACAACGCCCGATCATATAAC 60.060 47.826 0.00 0.00 0.00 1.89
4740 6390 4.272504 ACAACGCCCGATCATATAACAAAG 59.727 41.667 0.00 0.00 0.00 2.77
4741 6391 4.330944 ACGCCCGATCATATAACAAAGA 57.669 40.909 0.00 0.00 0.00 2.52
4746 6396 6.238374 CGCCCGATCATATAACAAAGAAAAGT 60.238 38.462 0.00 0.00 0.00 2.66
4747 6397 7.042321 CGCCCGATCATATAACAAAGAAAAGTA 60.042 37.037 0.00 0.00 0.00 2.24
4748 6398 8.068380 GCCCGATCATATAACAAAGAAAAGTAC 58.932 37.037 0.00 0.00 0.00 2.73
4749 6399 8.557029 CCCGATCATATAACAAAGAAAAGTACC 58.443 37.037 0.00 0.00 0.00 3.34
4760 6410 8.691661 ACAAAGAAAAGTACCATGTTCATAGT 57.308 30.769 0.00 0.00 0.00 2.12
4773 6423 6.350864 CCATGTTCATAGTTTTTACATGCCCA 60.351 38.462 0.00 0.00 42.80 5.36
4781 6431 4.279671 AGTTTTTACATGCCCAATCACGAA 59.720 37.500 0.00 0.00 0.00 3.85
4783 6433 4.433186 TTTACATGCCCAATCACGAAAG 57.567 40.909 0.00 0.00 0.00 2.62
4802 6452 7.144000 ACGAAAGTATCTTAATATGTCCGTCC 58.856 38.462 0.00 0.00 46.88 4.79
4803 6453 6.304922 CGAAAGTATCTTAATATGTCCGTCCG 59.695 42.308 0.00 0.00 0.00 4.79
4804 6454 6.645790 AAGTATCTTAATATGTCCGTCCGT 57.354 37.500 0.00 0.00 0.00 4.69
4805 6455 6.010294 AGTATCTTAATATGTCCGTCCGTG 57.990 41.667 0.00 0.00 0.00 4.94
4806 6456 5.766670 AGTATCTTAATATGTCCGTCCGTGA 59.233 40.000 0.00 0.00 0.00 4.35
4807 6457 4.987408 TCTTAATATGTCCGTCCGTGAA 57.013 40.909 0.00 0.00 0.00 3.18
4808 6458 5.327616 TCTTAATATGTCCGTCCGTGAAA 57.672 39.130 0.00 0.00 0.00 2.69
4809 6459 5.722263 TCTTAATATGTCCGTCCGTGAAAA 58.278 37.500 0.00 0.00 0.00 2.29
4810 6460 6.164876 TCTTAATATGTCCGTCCGTGAAAAA 58.835 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.578928 CCTAGCGGCACCAAAATAAACTAT 59.421 41.667 1.45 0.00 0.00 2.12
27 28 2.561569 CTATGGGGTGAAAACCTAGCG 58.438 52.381 0.00 0.00 0.00 4.26
38 39 2.364632 TGAAACGAATGCTATGGGGTG 58.635 47.619 0.00 0.00 0.00 4.61
58 59 1.976474 ACCGCATTTGCCCGTCATT 60.976 52.632 0.00 0.00 37.91 2.57
68 69 2.871453 ACTAGAAAACCCACCGCATTT 58.129 42.857 0.00 0.00 0.00 2.32
78 79 4.748600 AGTTCAACGCACTACTAGAAAACC 59.251 41.667 0.00 0.00 0.00 3.27
121 122 9.247861 AGCAGTATTACAAAGAATTCAGGAAAT 57.752 29.630 8.44 3.71 0.00 2.17
135 136 6.261381 AGAACGGAAAAACAGCAGTATTACAA 59.739 34.615 0.00 0.00 0.00 2.41
141 142 4.153475 GCATAGAACGGAAAAACAGCAGTA 59.847 41.667 0.00 0.00 0.00 2.74
146 147 5.698832 TCATTGCATAGAACGGAAAAACAG 58.301 37.500 0.00 0.00 0.00 3.16
150 151 6.155827 CCTTTTCATTGCATAGAACGGAAAA 58.844 36.000 1.24 0.00 33.36 2.29
164 165 2.497273 CCAGGCTAACCCCTTTTCATTG 59.503 50.000 0.00 0.00 36.11 2.82
172 174 0.774491 TTGGAACCAGGCTAACCCCT 60.774 55.000 0.00 0.00 36.11 4.79
240 275 6.207221 TCCGTTCCTTTTTAACTGGGAAATAC 59.793 38.462 0.00 0.00 39.20 1.89
241 276 6.305411 TCCGTTCCTTTTTAACTGGGAAATA 58.695 36.000 0.00 0.00 39.20 1.40
242 277 5.141910 TCCGTTCCTTTTTAACTGGGAAAT 58.858 37.500 0.00 0.00 39.20 2.17
243 278 4.534797 TCCGTTCCTTTTTAACTGGGAAA 58.465 39.130 0.00 0.00 39.20 3.13
244 279 4.167652 TCCGTTCCTTTTTAACTGGGAA 57.832 40.909 0.00 0.00 35.76 3.97
248 283 6.581166 GTGCTTATTCCGTTCCTTTTTAACTG 59.419 38.462 0.00 0.00 0.00 3.16
282 317 3.002246 CCCCGTGAATCGATATGTTTGTG 59.998 47.826 0.00 0.00 42.86 3.33
285 320 3.463944 GTCCCCGTGAATCGATATGTTT 58.536 45.455 0.00 0.00 42.86 2.83
286 321 2.545113 CGTCCCCGTGAATCGATATGTT 60.545 50.000 0.00 0.00 42.86 2.71
289 324 1.540267 CTCGTCCCCGTGAATCGATAT 59.460 52.381 0.00 0.00 42.86 1.63
290 325 0.949397 CTCGTCCCCGTGAATCGATA 59.051 55.000 0.00 0.00 42.86 2.92
291 326 0.750546 TCTCGTCCCCGTGAATCGAT 60.751 55.000 0.00 0.00 42.86 3.59
292 327 1.377594 TCTCGTCCCCGTGAATCGA 60.378 57.895 0.00 0.00 42.86 3.59
293 328 1.226603 GTCTCGTCCCCGTGAATCG 60.227 63.158 0.00 0.00 38.21 3.34
294 329 0.531200 AAGTCTCGTCCCCGTGAATC 59.469 55.000 0.00 0.00 38.21 2.52
295 330 1.475682 GTAAGTCTCGTCCCCGTGAAT 59.524 52.381 0.00 0.00 38.21 2.57
296 331 0.883833 GTAAGTCTCGTCCCCGTGAA 59.116 55.000 0.00 0.00 38.21 3.18
298 333 1.509923 GGTAAGTCTCGTCCCCGTG 59.490 63.158 0.00 0.00 35.01 4.94
299 334 1.680314 GGGTAAGTCTCGTCCCCGT 60.680 63.158 0.00 0.00 34.32 5.28
300 335 1.679977 TGGGTAAGTCTCGTCCCCG 60.680 63.158 0.00 0.00 39.20 5.73
301 336 0.614134 AGTGGGTAAGTCTCGTCCCC 60.614 60.000 0.00 0.00 39.20 4.81
302 337 0.816373 GAGTGGGTAAGTCTCGTCCC 59.184 60.000 0.00 0.00 40.26 4.46
303 338 0.816373 GGAGTGGGTAAGTCTCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
304 339 0.816373 GGGAGTGGGTAAGTCTCGTC 59.184 60.000 0.00 0.00 0.00 4.20
306 341 1.328430 GGGGGAGTGGGTAAGTCTCG 61.328 65.000 0.00 0.00 28.03 4.04
308 343 1.305887 CGGGGGAGTGGGTAAGTCT 60.306 63.158 0.00 0.00 0.00 3.24
309 344 1.611474 GACGGGGGAGTGGGTAAGTC 61.611 65.000 0.00 0.00 0.00 3.01
310 345 1.611556 GACGGGGGAGTGGGTAAGT 60.612 63.158 0.00 0.00 0.00 2.24
312 347 2.681064 CGACGGGGGAGTGGGTAA 60.681 66.667 0.00 0.00 0.00 2.85
316 351 4.373116 CACACGACGGGGGAGTGG 62.373 72.222 0.43 0.00 39.95 4.00
326 361 3.118454 CACGGATGGGCACACGAC 61.118 66.667 5.92 0.00 0.00 4.34
329 364 3.127533 GAGCACGGATGGGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
330 365 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
334 369 4.530857 GACGGGAGCACGGATGGG 62.531 72.222 0.00 0.00 38.39 4.00
336 371 1.065928 GTAGACGGGAGCACGGATG 59.934 63.158 0.00 0.00 38.39 3.51
337 372 2.478890 CGTAGACGGGAGCACGGAT 61.479 63.158 0.00 0.00 38.39 4.18
338 373 3.129502 CGTAGACGGGAGCACGGA 61.130 66.667 0.00 0.00 38.39 4.69
339 374 3.437795 ACGTAGACGGGAGCACGG 61.438 66.667 7.04 0.00 44.95 4.94
346 381 0.108329 AATCAAGCCACGTAGACGGG 60.108 55.000 7.04 1.53 44.95 5.28
347 382 1.722011 AAATCAAGCCACGTAGACGG 58.278 50.000 7.04 0.00 44.95 4.79
348 383 5.255596 CAATTAAATCAAGCCACGTAGACG 58.744 41.667 0.00 0.00 46.33 4.18
350 385 5.492895 TCCAATTAAATCAAGCCACGTAGA 58.507 37.500 0.00 0.00 0.00 2.59
351 386 5.811399 TCCAATTAAATCAAGCCACGTAG 57.189 39.130 0.00 0.00 0.00 3.51
352 387 5.473846 TGTTCCAATTAAATCAAGCCACGTA 59.526 36.000 0.00 0.00 0.00 3.57
353 388 4.279671 TGTTCCAATTAAATCAAGCCACGT 59.720 37.500 0.00 0.00 0.00 4.49
354 389 4.804108 TGTTCCAATTAAATCAAGCCACG 58.196 39.130 0.00 0.00 0.00 4.94
355 390 7.489574 TTTTGTTCCAATTAAATCAAGCCAC 57.510 32.000 0.00 0.00 0.00 5.01
356 391 9.784531 TTATTTTGTTCCAATTAAATCAAGCCA 57.215 25.926 0.00 0.00 0.00 4.75
361 396 9.651913 GAGCCTTATTTTGTTCCAATTAAATCA 57.348 29.630 0.00 0.00 0.00 2.57
362 397 8.807581 CGAGCCTTATTTTGTTCCAATTAAATC 58.192 33.333 0.00 0.00 0.00 2.17
363 398 7.763985 CCGAGCCTTATTTTGTTCCAATTAAAT 59.236 33.333 0.00 0.00 0.00 1.40
364 399 7.093992 CCGAGCCTTATTTTGTTCCAATTAAA 58.906 34.615 0.00 0.00 0.00 1.52
365 400 6.626302 CCGAGCCTTATTTTGTTCCAATTAA 58.374 36.000 0.00 0.00 0.00 1.40
366 401 5.393678 GCCGAGCCTTATTTTGTTCCAATTA 60.394 40.000 0.00 0.00 0.00 1.40
367 402 4.620567 GCCGAGCCTTATTTTGTTCCAATT 60.621 41.667 0.00 0.00 0.00 2.32
368 403 3.119137 GCCGAGCCTTATTTTGTTCCAAT 60.119 43.478 0.00 0.00 0.00 3.16
369 404 2.230266 GCCGAGCCTTATTTTGTTCCAA 59.770 45.455 0.00 0.00 0.00 3.53
371 406 1.134367 GGCCGAGCCTTATTTTGTTCC 59.866 52.381 7.58 0.00 46.69 3.62
384 419 0.180406 TTAAGAAGATGGGGCCGAGC 59.820 55.000 0.00 0.00 0.00 5.03
385 420 2.710096 TTTAAGAAGATGGGGCCGAG 57.290 50.000 0.00 0.00 0.00 4.63
386 421 3.662759 ATTTTAAGAAGATGGGGCCGA 57.337 42.857 0.00 0.00 0.00 5.54
387 422 5.221244 CCTTAATTTTAAGAAGATGGGGCCG 60.221 44.000 10.87 0.00 42.05 6.13
388 423 5.070446 CCCTTAATTTTAAGAAGATGGGGCC 59.930 44.000 10.87 0.00 42.05 5.80
389 424 5.070446 CCCCTTAATTTTAAGAAGATGGGGC 59.930 44.000 10.87 0.00 42.05 5.80
391 426 7.285629 GTCTCCCCTTAATTTTAAGAAGATGGG 59.714 40.741 10.87 11.48 42.05 4.00
392 427 7.012421 CGTCTCCCCTTAATTTTAAGAAGATGG 59.988 40.741 10.87 4.21 42.05 3.51
393 428 7.769044 TCGTCTCCCCTTAATTTTAAGAAGATG 59.231 37.037 10.87 13.37 42.05 2.90
394 429 7.858498 TCGTCTCCCCTTAATTTTAAGAAGAT 58.142 34.615 10.87 0.00 42.05 2.40
396 431 8.507524 AATCGTCTCCCCTTAATTTTAAGAAG 57.492 34.615 10.87 6.31 42.05 2.85
398 433 8.984855 TCTAATCGTCTCCCCTTAATTTTAAGA 58.015 33.333 10.87 0.00 42.05 2.10
399 434 9.780186 ATCTAATCGTCTCCCCTTAATTTTAAG 57.220 33.333 3.55 3.55 39.80 1.85
406 441 9.609346 CTTTTTAATCTAATCGTCTCCCCTTAA 57.391 33.333 0.00 0.00 0.00 1.85
408 443 7.858498 TCTTTTTAATCTAATCGTCTCCCCTT 58.142 34.615 0.00 0.00 0.00 3.95
409 444 7.433537 TCTTTTTAATCTAATCGTCTCCCCT 57.566 36.000 0.00 0.00 0.00 4.79
410 445 8.502105 TTTCTTTTTAATCTAATCGTCTCCCC 57.498 34.615 0.00 0.00 0.00 4.81
411 446 9.989869 CTTTTCTTTTTAATCTAATCGTCTCCC 57.010 33.333 0.00 0.00 0.00 4.30
446 688 4.514066 GTGTTTCCACTTCATTCTACGGTT 59.486 41.667 0.00 0.00 38.61 4.44
447 689 4.062991 GTGTTTCCACTTCATTCTACGGT 58.937 43.478 0.00 0.00 38.61 4.83
448 690 4.062293 TGTGTTTCCACTTCATTCTACGG 58.938 43.478 0.00 0.00 42.34 4.02
449 691 4.988540 TCTGTGTTTCCACTTCATTCTACG 59.011 41.667 0.00 0.00 42.34 3.51
450 692 6.650807 TCATCTGTGTTTCCACTTCATTCTAC 59.349 38.462 0.00 0.00 42.34 2.59
451 693 6.768483 TCATCTGTGTTTCCACTTCATTCTA 58.232 36.000 0.00 0.00 42.34 2.10
452 694 5.624159 TCATCTGTGTTTCCACTTCATTCT 58.376 37.500 0.00 0.00 42.34 2.40
453 695 5.702670 TCTCATCTGTGTTTCCACTTCATTC 59.297 40.000 0.00 0.00 42.34 2.67
454 696 5.624159 TCTCATCTGTGTTTCCACTTCATT 58.376 37.500 0.00 0.00 42.34 2.57
456 698 4.101585 ACTCTCATCTGTGTTTCCACTTCA 59.898 41.667 0.00 0.00 42.34 3.02
458 700 4.696479 ACTCTCATCTGTGTTTCCACTT 57.304 40.909 0.00 0.00 42.34 3.16
460 1423 4.872691 CCATACTCTCATCTGTGTTTCCAC 59.127 45.833 0.00 0.00 42.19 4.02
463 1426 5.344743 TCCCATACTCTCATCTGTGTTTC 57.655 43.478 0.00 0.00 0.00 2.78
467 1430 4.892345 TCTCTTCCCATACTCTCATCTGTG 59.108 45.833 0.00 0.00 0.00 3.66
471 1434 3.894427 TGCTCTCTTCCCATACTCTCATC 59.106 47.826 0.00 0.00 0.00 2.92
473 1436 3.388552 TGCTCTCTTCCCATACTCTCA 57.611 47.619 0.00 0.00 0.00 3.27
474 1437 3.492482 GCTTGCTCTCTTCCCATACTCTC 60.492 52.174 0.00 0.00 0.00 3.20
475 1438 2.433970 GCTTGCTCTCTTCCCATACTCT 59.566 50.000 0.00 0.00 0.00 3.24
481 1444 0.607489 GCTTGCTTGCTCTCTTCCCA 60.607 55.000 0.00 0.00 0.00 4.37
482 1445 1.311651 GGCTTGCTTGCTCTCTTCCC 61.312 60.000 1.96 0.00 0.00 3.97
483 1446 1.642952 CGGCTTGCTTGCTCTCTTCC 61.643 60.000 1.96 0.00 0.00 3.46
486 1449 1.908340 ATCCGGCTTGCTTGCTCTCT 61.908 55.000 0.00 0.00 0.00 3.10
487 1450 1.435408 GATCCGGCTTGCTTGCTCTC 61.435 60.000 0.00 0.00 0.00 3.20
489 1452 2.476320 GGATCCGGCTTGCTTGCTC 61.476 63.158 0.00 0.00 0.00 4.26
490 1453 2.439156 GGATCCGGCTTGCTTGCT 60.439 61.111 0.00 0.00 0.00 3.91
495 1458 0.307760 CGTAAATGGATCCGGCTTGC 59.692 55.000 7.39 3.01 0.00 4.01
496 1459 0.944386 CCGTAAATGGATCCGGCTTG 59.056 55.000 7.39 0.00 33.20 4.01
498 1461 1.052124 TCCCGTAAATGGATCCGGCT 61.052 55.000 7.39 0.00 39.12 5.52
499 1462 0.602905 CTCCCGTAAATGGATCCGGC 60.603 60.000 7.39 0.00 39.12 6.13
500 1463 0.034896 CCTCCCGTAAATGGATCCGG 59.965 60.000 7.39 0.00 40.12 5.14
501 1464 0.602905 GCCTCCCGTAAATGGATCCG 60.603 60.000 7.39 0.00 0.00 4.18
503 1466 0.391597 TCGCCTCCCGTAAATGGATC 59.608 55.000 0.00 0.00 38.35 3.36
507 1919 1.260561 CGATTTCGCCTCCCGTAAATG 59.739 52.381 0.00 0.00 38.35 2.32
553 1965 1.672030 TGATCTGGTGGCTGTTGCG 60.672 57.895 0.00 0.00 40.82 4.85
618 2030 2.677875 TCTCCTCTGCTGCTGCGA 60.678 61.111 11.21 9.96 43.34 5.10
619 2031 2.202770 CTCTCCTCTGCTGCTGCG 60.203 66.667 11.21 6.13 43.34 5.18
632 2047 1.458445 GTTACCGTTGCCGTTTCTCTC 59.542 52.381 0.00 0.00 0.00 3.20
640 2055 2.356075 TGTCCGTTACCGTTGCCG 60.356 61.111 0.00 0.00 0.00 5.69
641 2056 2.660612 CGTGTCCGTTACCGTTGCC 61.661 63.158 0.00 0.00 0.00 4.52
642 2057 2.660612 CCGTGTCCGTTACCGTTGC 61.661 63.158 0.00 0.00 0.00 4.17
643 2058 1.007502 TCCGTGTCCGTTACCGTTG 60.008 57.895 0.00 0.00 0.00 4.10
644 2059 1.007387 GTCCGTGTCCGTTACCGTT 60.007 57.895 0.00 0.00 0.00 4.44
649 2064 1.233950 TGTAGCGTCCGTGTCCGTTA 61.234 55.000 0.00 0.00 0.00 3.18
848 2269 3.490759 CCTGCGCGTCCATGACAC 61.491 66.667 8.43 0.00 32.09 3.67
1056 2497 0.251634 GGGCTGGGTTTCTCTCTCTG 59.748 60.000 0.00 0.00 0.00 3.35
1089 2530 1.682684 CCTCTACTCGGTGCAGGGT 60.683 63.158 0.00 0.00 0.00 4.34
1272 2729 0.323816 GAAAAGGGAGAAGCAGGGGG 60.324 60.000 0.00 0.00 0.00 5.40
1453 2914 1.336887 ACCAGCACGCAACTAGTACTG 60.337 52.381 5.39 0.00 33.85 2.74
1458 2919 1.461127 GAGAAACCAGCACGCAACTAG 59.539 52.381 0.00 0.00 0.00 2.57
1459 2920 1.508632 GAGAAACCAGCACGCAACTA 58.491 50.000 0.00 0.00 0.00 2.24
1460 2921 1.166531 GGAGAAACCAGCACGCAACT 61.167 55.000 0.00 0.00 38.79 3.16
1521 2982 0.515564 AAATCTGCGAACGAAACGGG 59.484 50.000 0.00 0.00 0.00 5.28
1533 2994 2.491621 GCCGAAGCCCAAATCTGC 59.508 61.111 0.00 0.00 0.00 4.26
1556 3017 4.495349 CGGCGTAAAACTCGAGAGATCTAA 60.495 45.833 21.68 0.00 40.84 2.10
1598 3059 0.462759 GGAAAGCATCCCCAGAGACG 60.463 60.000 0.00 0.00 43.00 4.18
1608 3069 0.857935 CGCAGATCGAGGAAAGCATC 59.142 55.000 0.00 0.00 41.67 3.91
1694 3155 2.486191 GCCTATCCAACAGCAGCAGTAT 60.486 50.000 0.00 0.00 0.00 2.12
1696 3157 0.393537 GCCTATCCAACAGCAGCAGT 60.394 55.000 0.00 0.00 0.00 4.40
1697 3158 0.107312 AGCCTATCCAACAGCAGCAG 60.107 55.000 0.00 0.00 0.00 4.24
1700 3161 2.119801 ACAAGCCTATCCAACAGCAG 57.880 50.000 0.00 0.00 0.00 4.24
1783 3244 6.424509 ACAGCACATCAACAAAATTTGTATGG 59.575 34.615 19.64 12.52 44.59 2.74
1827 3291 9.414295 CATCAGTAATCAGCTCAAATTCAAAAA 57.586 29.630 0.00 0.00 0.00 1.94
1840 3304 4.161333 GTGCAAACACATCAGTAATCAGC 58.839 43.478 0.00 0.00 46.61 4.26
2065 3551 0.104855 TGGCGGATTCATCTTCCTCG 59.895 55.000 0.00 0.00 0.00 4.63
2185 3677 1.060937 CGCAGATCGAAAAAGGGCG 59.939 57.895 0.00 0.00 41.67 6.13
2218 3712 5.741388 ACTAGCAATGCATAACAGCTAAC 57.259 39.130 8.35 0.00 37.35 2.34
2247 3741 8.218441 CAGCATGCGAATAAATAAAAATCCATG 58.782 33.333 13.01 0.00 0.00 3.66
2523 4031 4.977963 CACTGTCTACCAAACAAAGCAATG 59.022 41.667 0.00 0.00 0.00 2.82
2698 4229 9.239002 GAGTGCAGTAACAGTATTTCTATAGTG 57.761 37.037 0.00 0.00 41.50 2.74
2808 4339 4.563061 ACAAACCACACTACCGATTAGTC 58.437 43.478 0.00 0.00 39.18 2.59
2816 4347 2.531522 ACCGTACAAACCACACTACC 57.468 50.000 0.00 0.00 0.00 3.18
2901 4435 5.537300 ATGGTACTGATTGCCTGTAGTAG 57.463 43.478 0.00 0.00 31.17 2.57
2951 4485 0.035915 GCTTCTTGGGGGAGACACTC 60.036 60.000 0.00 0.00 0.00 3.51
2960 4494 1.304464 GGAGGTTGGCTTCTTGGGG 60.304 63.158 0.00 0.00 0.00 4.96
3022 4556 0.108472 CTTGCTGTCATCCTCGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
3248 4782 5.588246 TGCCGAAAGTGATTGAAAGCATATA 59.412 36.000 0.00 0.00 0.00 0.86
3249 4783 4.398988 TGCCGAAAGTGATTGAAAGCATAT 59.601 37.500 0.00 0.00 0.00 1.78
3564 5102 4.326255 CTGTCCATCAGGGGTTGC 57.674 61.111 0.00 0.00 40.23 4.17
3640 5187 4.196971 TCAATCACTCCTAGATCGAACGA 58.803 43.478 0.00 0.00 0.00 3.85
3641 5188 4.553756 TCAATCACTCCTAGATCGAACG 57.446 45.455 0.00 0.00 0.00 3.95
3642 5189 7.206687 AGAAATCAATCACTCCTAGATCGAAC 58.793 38.462 0.00 0.00 0.00 3.95
3643 5190 7.353414 AGAAATCAATCACTCCTAGATCGAA 57.647 36.000 0.00 0.00 0.00 3.71
3685 5232 1.655046 CCAACGAACGACGACGACA 60.655 57.895 15.32 0.00 45.77 4.35
3686 5233 1.655350 ACCAACGAACGACGACGAC 60.655 57.895 15.32 6.72 45.77 4.34
3742 5289 2.235761 CCGGGGAAAGGAAAGGGGA 61.236 63.158 0.00 0.00 0.00 4.81
3772 5319 0.677098 GAGAACGGGAAAGGGGAAGC 60.677 60.000 0.00 0.00 0.00 3.86
3774 5321 1.675219 CGAGAACGGGAAAGGGGAA 59.325 57.895 0.00 0.00 35.72 3.97
3775 5322 2.951101 GCGAGAACGGGAAAGGGGA 61.951 63.158 0.00 0.00 40.15 4.81
3776 5323 2.436115 GCGAGAACGGGAAAGGGG 60.436 66.667 0.00 0.00 40.15 4.79
3777 5324 1.741770 CAGCGAGAACGGGAAAGGG 60.742 63.158 0.00 0.00 40.15 3.95
3780 5327 2.529780 TTAACAGCGAGAACGGGAAA 57.470 45.000 0.00 0.00 40.15 3.13
3785 5333 5.518847 TCAGGATTAATTAACAGCGAGAACG 59.481 40.000 0.00 0.00 42.93 3.95
3868 5424 2.998670 GTTGTTAACTTAGAGGCGACCC 59.001 50.000 7.22 0.00 0.00 4.46
3903 5462 1.369209 CAACCACAAACGCAGCGAG 60.369 57.895 24.65 13.28 0.00 5.03
3905 5464 2.353376 CCAACCACAAACGCAGCG 60.353 61.111 14.82 14.82 0.00 5.18
3939 5498 2.629137 TCACTCACTTTAGGTACGCCAA 59.371 45.455 0.00 0.00 37.19 4.52
3991 5550 1.906966 CGCAGCACGCAATAAGAAAAG 59.093 47.619 0.00 0.00 42.60 2.27
4028 5587 3.114616 CTGCTGCAGGAACGGACG 61.115 66.667 21.71 0.00 0.00 4.79
4031 5590 3.730761 GCACTGCTGCAGGAACGG 61.731 66.667 31.00 16.39 43.62 4.44
4032 5591 3.730761 GGCACTGCTGCAGGAACG 61.731 66.667 31.00 17.85 46.28 3.95
4035 5594 4.648626 GGTGGCACTGCTGCAGGA 62.649 66.667 31.00 12.70 46.28 3.86
4037 5596 1.302752 TTAGGTGGCACTGCTGCAG 60.303 57.895 27.02 27.02 46.28 4.41
4117 5701 2.097038 CACCCGCGAGAGAAAGCTG 61.097 63.158 8.23 0.00 0.00 4.24
4118 5702 2.262915 CACCCGCGAGAGAAAGCT 59.737 61.111 8.23 0.00 0.00 3.74
4119 5703 2.048127 ACACCCGCGAGAGAAAGC 60.048 61.111 8.23 0.00 0.00 3.51
4120 5704 1.006102 ACACACCCGCGAGAGAAAG 60.006 57.895 8.23 0.00 0.00 2.62
4121 5705 1.006571 GACACACCCGCGAGAGAAA 60.007 57.895 8.23 0.00 0.00 2.52
4122 5706 0.607217 TAGACACACCCGCGAGAGAA 60.607 55.000 8.23 0.00 0.00 2.87
4123 5707 1.002990 TAGACACACCCGCGAGAGA 60.003 57.895 8.23 0.00 0.00 3.10
4124 5708 1.429825 CTAGACACACCCGCGAGAG 59.570 63.158 8.23 0.00 0.00 3.20
4125 5709 2.044555 CCTAGACACACCCGCGAGA 61.045 63.158 8.23 0.00 0.00 4.04
4126 5710 2.490217 CCTAGACACACCCGCGAG 59.510 66.667 8.23 0.00 0.00 5.03
4127 5711 3.755628 GCCTAGACACACCCGCGA 61.756 66.667 8.23 0.00 0.00 5.87
4128 5712 4.814294 GGCCTAGACACACCCGCG 62.814 72.222 0.00 0.00 0.00 6.46
4129 5713 3.702048 TGGCCTAGACACACCCGC 61.702 66.667 3.32 0.00 0.00 6.13
4130 5714 2.264794 GTGGCCTAGACACACCCG 59.735 66.667 3.32 0.00 41.94 5.28
4131 5715 3.478780 TGTGGCCTAGACACACCC 58.521 61.111 13.92 0.00 45.11 4.61
4135 5719 4.250116 CATCTAGATGTGGCCTAGACAC 57.750 50.000 22.42 9.72 43.57 3.67
4157 5741 7.986889 TCATTTAGATGTGCAATAACTAGAGCA 59.013 33.333 0.00 0.00 34.77 4.26
4158 5742 8.370493 TCATTTAGATGTGCAATAACTAGAGC 57.630 34.615 0.00 0.00 34.77 4.09
4159 5743 9.539825 ACTCATTTAGATGTGCAATAACTAGAG 57.460 33.333 0.00 0.00 34.77 2.43
4160 5744 9.317936 CACTCATTTAGATGTGCAATAACTAGA 57.682 33.333 0.00 0.00 34.77 2.43
4161 5745 9.317936 TCACTCATTTAGATGTGCAATAACTAG 57.682 33.333 0.00 0.00 34.77 2.57
4162 5746 9.317936 CTCACTCATTTAGATGTGCAATAACTA 57.682 33.333 0.00 0.00 34.77 2.24
4163 5747 7.826252 ACTCACTCATTTAGATGTGCAATAACT 59.174 33.333 0.00 0.00 34.77 2.24
4164 5748 7.978982 ACTCACTCATTTAGATGTGCAATAAC 58.021 34.615 0.00 0.00 34.77 1.89
4165 5749 8.565896 AACTCACTCATTTAGATGTGCAATAA 57.434 30.769 0.00 0.00 34.77 1.40
4166 5750 9.665719 TTAACTCACTCATTTAGATGTGCAATA 57.334 29.630 0.00 0.00 34.77 1.90
4167 5751 8.565896 TTAACTCACTCATTTAGATGTGCAAT 57.434 30.769 0.00 0.00 34.77 3.56
4168 5752 7.661437 ACTTAACTCACTCATTTAGATGTGCAA 59.339 33.333 0.00 0.00 34.77 4.08
4169 5753 7.161404 ACTTAACTCACTCATTTAGATGTGCA 58.839 34.615 0.00 0.00 34.77 4.57
4170 5754 7.602517 ACTTAACTCACTCATTTAGATGTGC 57.397 36.000 0.00 0.00 34.77 4.57
4302 5886 9.087355 CGAGAGCGAGAGAACAGTTTTGTTAAA 62.087 40.741 0.00 0.00 43.16 1.52
4303 5887 7.704933 CGAGAGCGAGAGAACAGTTTTGTTAA 61.705 42.308 0.00 0.00 43.16 2.01
4304 5888 6.292897 CGAGAGCGAGAGAACAGTTTTGTTA 61.293 44.000 0.00 0.00 43.16 2.41
4305 5889 5.550136 CGAGAGCGAGAGAACAGTTTTGTT 61.550 45.833 0.00 0.00 44.68 2.83
4306 5890 3.385577 GAGAGCGAGAGAACAGTTTTGT 58.614 45.455 0.00 0.00 39.87 2.83
4307 5891 2.406691 CGAGAGCGAGAGAACAGTTTTG 59.593 50.000 0.00 0.00 40.82 2.44
4308 5892 2.034812 ACGAGAGCGAGAGAACAGTTTT 59.965 45.455 0.00 0.00 41.64 2.43
4309 5893 1.609555 ACGAGAGCGAGAGAACAGTTT 59.390 47.619 0.00 0.00 41.64 2.66
4310 5894 1.198178 GACGAGAGCGAGAGAACAGTT 59.802 52.381 0.00 0.00 41.64 3.16
4311 5895 0.800012 GACGAGAGCGAGAGAACAGT 59.200 55.000 0.00 0.00 41.64 3.55
4312 5896 0.247497 CGACGAGAGCGAGAGAACAG 60.247 60.000 0.00 0.00 41.64 3.16
4313 5897 0.669625 TCGACGAGAGCGAGAGAACA 60.670 55.000 0.00 0.00 41.64 3.18
4314 5898 2.079874 TCGACGAGAGCGAGAGAAC 58.920 57.895 0.00 0.00 41.64 3.01
4315 5899 4.592426 TCGACGAGAGCGAGAGAA 57.408 55.556 0.00 0.00 41.64 2.87
4367 5964 1.439365 CAAAGAGCGCGCAACAGTC 60.439 57.895 35.10 21.49 0.00 3.51
4440 6054 1.377725 CAAGGCGCAACTCCCATCT 60.378 57.895 10.83 0.00 0.00 2.90
4453 6067 6.381481 TCAATCACATCATTATCACAAGGC 57.619 37.500 0.00 0.00 0.00 4.35
4463 6077 4.336153 TGCGTGCTAATCAATCACATCATT 59.664 37.500 0.00 0.00 0.00 2.57
4588 6202 3.474798 TGTACTTGGAGATCTGGGAGT 57.525 47.619 0.00 3.32 0.00 3.85
4594 6208 4.274147 ACTCGTCATGTACTTGGAGATCT 58.726 43.478 16.65 0.00 0.00 2.75
4603 6217 0.452184 CCGCAGACTCGTCATGTACT 59.548 55.000 0.00 0.00 0.00 2.73
4609 6243 1.212751 CATGTCCGCAGACTCGTCA 59.787 57.895 1.05 0.00 43.91 4.35
4610 6244 0.450583 TACATGTCCGCAGACTCGTC 59.549 55.000 0.00 0.00 43.91 4.20
4612 6246 0.861866 CGTACATGTCCGCAGACTCG 60.862 60.000 0.00 0.00 43.91 4.18
4620 6254 1.286354 AACGGTTGCGTACATGTCCG 61.286 55.000 17.14 17.14 39.28 4.79
4624 6258 1.533731 AGGAAAACGGTTGCGTACATG 59.466 47.619 0.00 0.00 0.00 3.21
4651 6296 0.971386 ATTGGCCAAAACTGAGCAGG 59.029 50.000 24.71 0.00 0.00 4.85
4654 6299 3.110447 TCAAATTGGCCAAAACTGAGC 57.890 42.857 24.71 0.00 0.00 4.26
4708 6354 2.473760 CGGGCGTTGTGTGAAACCA 61.474 57.895 0.00 0.00 34.36 3.67
4710 6356 0.110373 GATCGGGCGTTGTGTGAAAC 60.110 55.000 0.00 0.00 37.35 2.78
4718 6368 4.509970 TCTTTGTTATATGATCGGGCGTTG 59.490 41.667 0.00 0.00 0.00 4.10
4722 6372 7.027778 ACTTTTCTTTGTTATATGATCGGGC 57.972 36.000 0.00 0.00 0.00 6.13
4734 6384 9.131791 ACTATGAACATGGTACTTTTCTTTGTT 57.868 29.630 0.00 0.00 30.37 2.83
4735 6385 8.691661 ACTATGAACATGGTACTTTTCTTTGT 57.308 30.769 0.00 0.00 30.37 2.83
4736 6386 9.965824 AAACTATGAACATGGTACTTTTCTTTG 57.034 29.630 4.39 0.00 31.98 2.77
4746 6396 7.147983 GGGCATGTAAAAACTATGAACATGGTA 60.148 37.037 13.74 0.00 44.76 3.25
4747 6397 6.350949 GGGCATGTAAAAACTATGAACATGGT 60.351 38.462 13.74 0.00 44.76 3.55
4748 6398 6.042143 GGGCATGTAAAAACTATGAACATGG 58.958 40.000 13.74 0.00 44.76 3.66
4749 6399 6.629128 TGGGCATGTAAAAACTATGAACATG 58.371 36.000 8.91 8.91 46.44 3.21
4760 6410 4.855715 TTCGTGATTGGGCATGTAAAAA 57.144 36.364 0.00 0.00 0.00 1.94
4773 6423 9.193133 CGGACATATTAAGATACTTTCGTGATT 57.807 33.333 0.00 0.00 0.00 2.57
4781 6431 6.263842 TCACGGACGGACATATTAAGATACTT 59.736 38.462 0.00 0.00 0.00 2.24
4783 6433 6.005583 TCACGGACGGACATATTAAGATAC 57.994 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.