Multiple sequence alignment - TraesCS2A01G161800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G161800
chr2A
100.000
4054
0
0
500
4553
114314061
114310008
0.000000e+00
7487.0
1
TraesCS2A01G161800
chr2A
100.000
258
0
0
1
258
114314560
114314303
1.150000e-130
477.0
2
TraesCS2A01G161800
chr3B
96.003
3553
101
21
583
4111
103242918
103246453
0.000000e+00
5736.0
3
TraesCS2A01G161800
chr2D
97.317
3317
68
10
582
3889
112874514
112871210
0.000000e+00
5613.0
4
TraesCS2A01G161800
chr2D
92.593
648
28
9
3921
4553
112870845
112870203
0.000000e+00
913.0
5
TraesCS2A01G161800
chr2D
95.522
67
3
0
1
67
112888124
112888190
1.730000e-19
108.0
6
TraesCS2A01G161800
chr5B
86.448
2959
323
47
990
3908
58898409
58895489
0.000000e+00
3171.0
7
TraesCS2A01G161800
chr5D
86.202
2870
323
44
1082
3920
56128547
56125720
0.000000e+00
3038.0
8
TraesCS2A01G161800
chr2B
93.489
2012
121
6
1021
3032
163323672
163321671
0.000000e+00
2981.0
9
TraesCS2A01G161800
chr2B
91.791
1547
85
15
3028
4553
163260465
163258940
0.000000e+00
2115.0
10
TraesCS2A01G161800
chr2B
90.000
380
35
3
648
1025
163334116
163333738
5.290000e-134
488.0
11
TraesCS2A01G161800
chr2B
87.109
256
33
0
1
256
163334653
163334398
1.600000e-74
291.0
12
TraesCS2A01G161800
chr2B
98.000
50
1
0
516
565
163334239
163334190
2.260000e-13
87.9
13
TraesCS2A01G161800
chr2B
100.000
32
0
0
500
531
163334313
163334282
4.920000e-05
60.2
14
TraesCS2A01G161800
chr5A
87.646
2048
218
23
1894
3912
44950820
44948779
0.000000e+00
2348.0
15
TraesCS2A01G161800
chr5A
82.559
883
108
23
1024
1904
44951997
44951159
0.000000e+00
736.0
16
TraesCS2A01G161800
chrUn
100.000
409
0
0
2245
2653
477841090
477840682
0.000000e+00
756.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G161800
chr2A
114310008
114314560
4552
True
3982.000
7487
100.00000
1
4553
2
chr2A.!!$R1
4552
1
TraesCS2A01G161800
chr3B
103242918
103246453
3535
False
5736.000
5736
96.00300
583
4111
1
chr3B.!!$F1
3528
2
TraesCS2A01G161800
chr2D
112870203
112874514
4311
True
3263.000
5613
94.95500
582
4553
2
chr2D.!!$R1
3971
3
TraesCS2A01G161800
chr5B
58895489
58898409
2920
True
3171.000
3171
86.44800
990
3908
1
chr5B.!!$R1
2918
4
TraesCS2A01G161800
chr5D
56125720
56128547
2827
True
3038.000
3038
86.20200
1082
3920
1
chr5D.!!$R1
2838
5
TraesCS2A01G161800
chr2B
163321671
163323672
2001
True
2981.000
2981
93.48900
1021
3032
1
chr2B.!!$R2
2011
6
TraesCS2A01G161800
chr2B
163258940
163260465
1525
True
2115.000
2115
91.79100
3028
4553
1
chr2B.!!$R1
1525
7
TraesCS2A01G161800
chr2B
163333738
163334653
915
True
231.775
488
93.77725
1
1025
4
chr2B.!!$R3
1024
8
TraesCS2A01G161800
chr5A
44948779
44951997
3218
True
1542.000
2348
85.10250
1024
3912
2
chr5A.!!$R1
2888
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
960
1082
0.248907
TGATTCGAGATTCGCCCGTC
60.249
55.0
0.0
0.0
40.21
4.79
F
1395
1544
0.030297
ATGCAGAGGAGGACCAGGAT
60.030
55.0
0.0
0.0
38.94
3.24
F
2964
3483
0.694771
TGATCTGGGCTTCTGCTGTT
59.305
50.0
0.0
0.0
39.59
3.16
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2243
2759
1.869767
CCTCATAGCGCACCTTCAATC
59.130
52.381
11.47
0.00
0.00
2.67
R
3009
3528
2.065899
ACAAAACCAGCTGCCACTTA
57.934
45.000
8.66
0.00
0.00
2.24
R
4296
5189
0.888619
TCAGGACGAAGCTCGAACAT
59.111
50.000
11.64
2.18
43.74
2.71
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
30
31
1.696336
CTGGATATCCCCAGTCACCTG
59.304
57.143
19.34
0.00
46.62
4.00
51
52
1.086696
TTAGCGTCAGAAGCAATGGC
58.913
50.000
11.18
0.00
41.61
4.40
52
53
0.744414
TAGCGTCAGAAGCAATGGCC
60.744
55.000
11.18
0.00
42.56
5.36
56
57
1.666888
CGTCAGAAGCAATGGCCAAAC
60.667
52.381
10.96
1.32
42.56
2.93
75
76
4.559862
AACGATGGAGGTGAAGATCTTT
57.440
40.909
9.87
0.00
0.00
2.52
79
80
4.202202
CGATGGAGGTGAAGATCTTTAGCT
60.202
45.833
26.46
26.46
39.17
3.32
82
83
4.100189
TGGAGGTGAAGATCTTTAGCTAGC
59.900
45.833
26.28
17.04
37.10
3.42
84
85
2.797719
GGTGAAGATCTTTAGCTAGCGC
59.202
50.000
19.07
0.00
0.00
5.92
94
95
1.328279
TAGCTAGCGCTAATGCCTCA
58.672
50.000
21.20
7.77
46.79
3.86
107
108
2.327343
GCCTCACTGCACGCAATGA
61.327
57.895
2.91
2.91
31.18
2.57
112
113
0.870393
CACTGCACGCAATGAACTCT
59.130
50.000
0.00
0.00
0.00
3.24
125
126
5.163814
GCAATGAACTCTAATATCGATGGGC
60.164
44.000
8.54
0.00
0.00
5.36
149
150
3.937706
GTCCACTCATCCAATGACAAGAG
59.062
47.826
0.00
0.00
35.06
2.85
151
152
2.350804
CACTCATCCAATGACAAGAGCG
59.649
50.000
0.00
0.00
35.06
5.03
152
153
1.329906
CTCATCCAATGACAAGAGCGC
59.670
52.381
0.00
0.00
35.06
5.92
155
156
2.988010
TCCAATGACAAGAGCGCTAT
57.012
45.000
11.50
3.14
0.00
2.97
160
161
3.550437
ATGACAAGAGCGCTATTTCCT
57.450
42.857
15.88
1.39
0.00
3.36
166
167
3.737032
AGAGCGCTATTTCCTAGGAAC
57.263
47.619
24.21
11.45
33.41
3.62
190
191
6.207025
ACGTTCCATCTATATCTCTACACACC
59.793
42.308
0.00
0.00
0.00
4.16
193
194
4.702612
CCATCTATATCTCTACACACCGCT
59.297
45.833
0.00
0.00
0.00
5.52
195
196
2.802787
ATATCTCTACACACCGCTGC
57.197
50.000
0.00
0.00
0.00
5.25
204
205
4.389576
CACCGCTGCTGCCGTTTC
62.390
66.667
10.24
0.00
35.36
2.78
214
215
1.831652
CTGCCGTTTCTCCCACTCCT
61.832
60.000
0.00
0.00
0.00
3.69
218
219
2.152016
CCGTTTCTCCCACTCCTTTTC
58.848
52.381
0.00
0.00
0.00
2.29
224
225
1.279271
CTCCCACTCCTTTTCGGACAT
59.721
52.381
0.00
0.00
36.69
3.06
256
257
2.943033
GTGTATCTTTGCATAGCCCGTT
59.057
45.455
0.00
0.00
0.00
4.44
567
626
4.586841
CCTTGTGGGTTTTGAAAGATACCA
59.413
41.667
0.31
0.00
32.20
3.25
569
628
5.975693
TGTGGGTTTTGAAAGATACCATC
57.024
39.130
0.31
0.00
32.20
3.51
570
629
4.457603
TGTGGGTTTTGAAAGATACCATCG
59.542
41.667
0.31
0.00
32.20
3.84
571
630
4.457949
GTGGGTTTTGAAAGATACCATCGT
59.542
41.667
0.31
0.00
32.20
3.73
572
631
4.457603
TGGGTTTTGAAAGATACCATCGTG
59.542
41.667
0.31
0.00
32.20
4.35
573
632
4.142469
GGGTTTTGAAAGATACCATCGTGG
60.142
45.833
0.31
2.92
45.02
4.94
574
633
4.698304
GGTTTTGAAAGATACCATCGTGGA
59.302
41.667
10.46
0.00
40.96
4.02
575
634
5.357032
GGTTTTGAAAGATACCATCGTGGAT
59.643
40.000
10.46
1.33
40.96
3.41
577
636
5.351948
TTGAAAGATACCATCGTGGATCA
57.648
39.130
10.46
3.53
40.96
2.92
578
637
5.551305
TGAAAGATACCATCGTGGATCAT
57.449
39.130
10.46
2.05
40.96
2.45
579
638
5.299949
TGAAAGATACCATCGTGGATCATG
58.700
41.667
10.46
0.00
40.96
3.07
580
639
3.969287
AGATACCATCGTGGATCATGG
57.031
47.619
10.46
7.98
40.96
3.66
601
677
4.702274
ACCATGGGCCCAAGCACC
62.702
66.667
32.58
0.00
44.14
5.01
623
699
5.063204
CCCTTCGCCATTTGACATTCTATA
58.937
41.667
0.00
0.00
0.00
1.31
624
700
5.707298
CCCTTCGCCATTTGACATTCTATAT
59.293
40.000
0.00
0.00
0.00
0.86
625
701
6.128172
CCCTTCGCCATTTGACATTCTATATC
60.128
42.308
0.00
0.00
0.00
1.63
626
702
6.427853
CCTTCGCCATTTGACATTCTATATCA
59.572
38.462
0.00
0.00
0.00
2.15
627
703
7.360691
CCTTCGCCATTTGACATTCTATATCAG
60.361
40.741
0.00
0.00
0.00
2.90
628
704
5.409520
TCGCCATTTGACATTCTATATCAGC
59.590
40.000
0.00
0.00
0.00
4.26
629
705
5.391310
CGCCATTTGACATTCTATATCAGCC
60.391
44.000
0.00
0.00
0.00
4.85
630
706
5.105997
GCCATTTGACATTCTATATCAGCCC
60.106
44.000
0.00
0.00
0.00
5.19
631
707
6.005823
CCATTTGACATTCTATATCAGCCCA
58.994
40.000
0.00
0.00
0.00
5.36
632
708
6.662234
CCATTTGACATTCTATATCAGCCCAT
59.338
38.462
0.00
0.00
0.00
4.00
633
709
7.362660
CCATTTGACATTCTATATCAGCCCATG
60.363
40.741
0.00
0.00
0.00
3.66
634
710
4.582869
TGACATTCTATATCAGCCCATGC
58.417
43.478
0.00
0.00
37.95
4.06
751
849
1.214367
GAAAAACAGTCGCTCGTGGA
58.786
50.000
0.00
0.00
0.00
4.02
889
1010
3.182996
AGTTCCCACCCCCGCTTT
61.183
61.111
0.00
0.00
0.00
3.51
890
1011
2.203582
GTTCCCACCCCCGCTTTT
60.204
61.111
0.00
0.00
0.00
2.27
960
1082
0.248907
TGATTCGAGATTCGCCCGTC
60.249
55.000
0.00
0.00
40.21
4.79
1173
1307
0.107752
GGGACTCCGACTACGACTCT
60.108
60.000
0.00
0.00
42.66
3.24
1299
1442
1.284841
CCCCAAAGCCAGAGGAGGAT
61.285
60.000
0.00
0.00
0.00
3.24
1395
1544
0.030297
ATGCAGAGGAGGACCAGGAT
60.030
55.000
0.00
0.00
38.94
3.24
1416
1577
1.594833
GTACATCGACCTGCCCACA
59.405
57.895
0.00
0.00
0.00
4.17
2243
2759
2.437413
GTTGCTTAAGACCTTCCAGGG
58.563
52.381
6.67
0.00
40.58
4.45
2886
3405
3.378112
TCATTCCTAAGCTGAAAATGGCG
59.622
43.478
9.95
0.00
0.00
5.69
2964
3483
0.694771
TGATCTGGGCTTCTGCTGTT
59.305
50.000
0.00
0.00
39.59
3.16
3468
3987
2.752903
TGTCAAGCGACTACTCTATGCA
59.247
45.455
0.00
0.00
43.06
3.96
3625
4146
6.586844
GTGTAGGTAGTCTTCAAATGTGTCTC
59.413
42.308
0.00
0.00
0.00
3.36
3630
4151
2.668457
GTCTTCAAATGTGTCTCGCGAT
59.332
45.455
10.36
0.00
0.00
4.58
3713
4236
5.867903
TTCCACATTTCAACATGGAACTT
57.132
34.783
0.00
0.00
44.43
2.66
3730
4257
4.398358
GGAACTTGGTTATTGCCCTAGAAC
59.602
45.833
0.00
0.00
0.00
3.01
3758
4285
6.882610
AATTGATGCAGAACTGTTTCTACA
57.117
33.333
0.00
0.00
40.34
2.74
3829
4378
6.313658
AGTTCATTTCTTGTTTTGTTTCCTGC
59.686
34.615
0.00
0.00
0.00
4.85
3968
4854
1.807755
GCTCGATGCCATGTTCAGCTA
60.808
52.381
0.00
0.00
35.15
3.32
4071
4962
6.067217
AGCATTTTATCCAGTACCACTCTT
57.933
37.500
0.00
0.00
0.00
2.85
4077
4968
9.668497
ATTTTATCCAGTACCACTCTTCTTTAC
57.332
33.333
0.00
0.00
0.00
2.01
4228
5121
6.909909
GTGGTTTACACTGGAATTTAGGAAG
58.090
40.000
0.00
0.00
46.72
3.46
4233
5126
5.941948
ACACTGGAATTTAGGAAGTTTCG
57.058
39.130
0.00
0.00
0.00
3.46
4296
5189
3.118811
CCTTTGTCAACCCTTGCTTTCAA
60.119
43.478
0.00
0.00
0.00
2.69
4339
5232
7.450014
TGAGGTCTTTATTTATTGGAACTGCAA
59.550
33.333
0.00
0.00
0.00
4.08
4383
5289
2.334023
GGGCCTGATCTGGTAAGAGAT
58.666
52.381
18.82
0.00
35.37
2.75
4385
5291
4.100373
GGGCCTGATCTGGTAAGAGATAT
58.900
47.826
18.82
0.00
35.37
1.63
4391
5297
8.589338
GCCTGATCTGGTAAGAGATATTTTCTA
58.411
37.037
18.82
0.00
35.37
2.10
4409
5315
7.700022
TTTTCTACTCTTCTGTACCTAGTCC
57.300
40.000
0.00
0.00
0.00
3.85
4413
5319
5.370875
ACTCTTCTGTACCTAGTCCGTAT
57.629
43.478
0.00
0.00
0.00
3.06
4416
5322
4.164796
TCTTCTGTACCTAGTCCGTATCCA
59.835
45.833
0.00
0.00
0.00
3.41
4438
5346
6.420903
TCCAAGATATCTTCACTTATTTCGCG
59.579
38.462
15.24
0.00
33.11
5.87
4462
5370
5.049405
GCTACGGCTGTATTGCTAAAATCAT
60.049
40.000
5.70
0.00
35.22
2.45
4522
5430
6.150976
ACAGAGTTGACATTGTCAGTTTGAAA
59.849
34.615
18.27
0.60
43.69
2.69
4523
5431
7.148018
ACAGAGTTGACATTGTCAGTTTGAAAT
60.148
33.333
18.27
3.33
43.69
2.17
4533
5441
6.852858
TGTCAGTTTGAAATTGTCGACATA
57.147
33.333
20.80
10.84
0.00
2.29
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
23
24
2.433868
TCTGACGCTAAACAGGTGAC
57.566
50.000
0.00
0.00
35.20
3.67
25
26
1.461127
GCTTCTGACGCTAAACAGGTG
59.539
52.381
0.00
0.00
35.20
4.00
30
31
2.729156
GCCATTGCTTCTGACGCTAAAC
60.729
50.000
7.67
0.00
33.53
2.01
52
53
3.866651
AGATCTTCACCTCCATCGTTTG
58.133
45.455
0.00
0.00
0.00
2.93
56
57
4.054671
GCTAAAGATCTTCACCTCCATCG
58.945
47.826
8.78
0.00
0.00
3.84
79
80
0.530650
GCAGTGAGGCATTAGCGCTA
60.531
55.000
14.45
14.45
43.41
4.26
82
83
1.717937
GTGCAGTGAGGCATTAGCG
59.282
57.895
0.00
0.00
46.92
4.26
84
85
1.020861
TGCGTGCAGTGAGGCATTAG
61.021
55.000
0.00
0.00
46.92
1.73
87
88
1.676635
ATTGCGTGCAGTGAGGCAT
60.677
52.632
0.00
0.00
46.92
4.40
94
95
2.455674
TAGAGTTCATTGCGTGCAGT
57.544
45.000
0.00
0.00
0.00
4.40
107
108
2.897969
ACGGCCCATCGATATTAGAGTT
59.102
45.455
0.00
0.00
0.00
3.01
112
113
1.634960
TGGACGGCCCATCGATATTA
58.365
50.000
3.83
0.00
40.82
0.98
125
126
1.066215
TGTCATTGGATGAGTGGACGG
60.066
52.381
0.00
0.00
40.53
4.79
135
136
2.988010
TAGCGCTCTTGTCATTGGAT
57.012
45.000
16.34
0.00
0.00
3.41
149
150
2.220479
ACGTTCCTAGGAAATAGCGC
57.780
50.000
25.89
11.27
35.75
5.92
166
167
6.613233
GGTGTGTAGAGATATAGATGGAACG
58.387
44.000
0.00
0.00
0.00
3.95
174
175
3.504134
AGCAGCGGTGTGTAGAGATATAG
59.496
47.826
17.07
0.00
0.00
1.31
176
177
2.035193
CAGCAGCGGTGTGTAGAGATAT
59.965
50.000
17.07
0.00
0.00
1.63
190
191
3.793144
GGAGAAACGGCAGCAGCG
61.793
66.667
0.00
0.00
43.41
5.18
193
194
2.281484
GTGGGAGAAACGGCAGCA
60.281
61.111
0.00
0.00
0.00
4.41
195
196
1.376037
GGAGTGGGAGAAACGGCAG
60.376
63.158
0.00
0.00
0.00
4.85
203
204
3.468552
TCCGAAAAGGAGTGGGAGA
57.531
52.632
0.00
0.00
45.98
3.71
214
215
2.159430
CGTTGATGCTGATGTCCGAAAA
59.841
45.455
0.00
0.00
0.00
2.29
218
219
0.371301
CACGTTGATGCTGATGTCCG
59.629
55.000
0.00
0.00
0.00
4.79
224
225
3.125146
GCAAAGATACACGTTGATGCTGA
59.875
43.478
0.00
0.00
39.61
4.26
553
612
6.176896
TGATCCACGATGGTATCTTTCAAAA
58.823
36.000
0.00
0.00
39.03
2.44
565
624
1.942657
GTTGACCATGATCCACGATGG
59.057
52.381
7.98
7.98
44.23
3.51
567
626
1.559219
TGGTTGACCATGATCCACGAT
59.441
47.619
0.00
0.00
42.01
3.73
569
628
3.549412
TGGTTGACCATGATCCACG
57.451
52.632
0.00
0.00
42.01
4.94
579
638
1.984026
CTTGGGCCCATGGTTGACC
60.984
63.158
29.23
8.61
0.00
4.02
580
639
2.649129
GCTTGGGCCCATGGTTGAC
61.649
63.158
32.65
16.09
0.00
3.18
601
677
6.427853
TGATATAGAATGTCAAATGGCGAAGG
59.572
38.462
0.00
0.00
0.00
3.46
634
710
2.289945
GGGCTGTATGGATAGCTGGAAG
60.290
54.545
0.00
0.00
39.63
3.46
635
711
1.699634
GGGCTGTATGGATAGCTGGAA
59.300
52.381
0.00
0.00
39.63
3.53
636
712
1.352083
GGGCTGTATGGATAGCTGGA
58.648
55.000
0.00
0.00
39.63
3.86
637
713
0.036952
CGGGCTGTATGGATAGCTGG
60.037
60.000
0.00
0.00
39.63
4.85
638
714
0.969149
TCGGGCTGTATGGATAGCTG
59.031
55.000
0.00
0.00
39.63
4.24
639
715
1.717032
TTCGGGCTGTATGGATAGCT
58.283
50.000
0.00
0.00
39.63
3.32
640
716
2.622436
GATTCGGGCTGTATGGATAGC
58.378
52.381
0.00
0.00
39.01
2.97
641
717
2.417379
CCGATTCGGGCTGTATGGATAG
60.417
54.545
17.53
0.00
44.15
2.08
751
849
1.436336
CGCGTCGGAGGGACTATTT
59.564
57.895
0.00
0.00
43.79
1.40
838
958
3.766691
GTCTACCTTGCCGCCCGA
61.767
66.667
0.00
0.00
0.00
5.14
889
1010
0.393448
TCAACACGATGGGACGGAAA
59.607
50.000
0.00
0.00
37.61
3.13
890
1011
0.611200
ATCAACACGATGGGACGGAA
59.389
50.000
0.00
0.00
37.61
4.30
1299
1442
3.397439
GGCCTCTGCTGCTCCTCA
61.397
66.667
0.00
0.00
37.74
3.86
1395
1544
2.420568
GGGCAGGTCGATGTACGGA
61.421
63.158
0.00
0.00
42.82
4.69
1416
1577
3.645268
GATCCGCTGCCCAAACCCT
62.645
63.158
0.00
0.00
0.00
4.34
2243
2759
1.869767
CCTCATAGCGCACCTTCAATC
59.130
52.381
11.47
0.00
0.00
2.67
2886
3405
3.942115
GGTTAATCTGAAACTCCTGGAGC
59.058
47.826
23.43
8.18
32.04
4.70
3009
3528
2.065899
ACAAAACCAGCTGCCACTTA
57.934
45.000
8.66
0.00
0.00
2.24
3468
3987
4.503714
TTCAGTTCCCTCTTGAAGTTGT
57.496
40.909
0.00
0.00
0.00
3.32
3625
4146
6.274001
AGTAATTCTACAACAATGATCGCG
57.726
37.500
0.00
0.00
0.00
5.87
3663
4184
9.794719
ATCACATTCAGATACATCATCAGAAAT
57.205
29.630
0.00
0.00
41.05
2.17
3713
4236
3.985019
TTCGTTCTAGGGCAATAACCA
57.015
42.857
0.00
0.00
0.00
3.67
3730
4257
7.246311
AGAAACAGTTCTGCATCAATTATTCG
58.754
34.615
0.00
0.00
42.73
3.34
3829
4378
1.001974
TGGGAGGGCATTCGATTATCG
59.998
52.381
8.47
8.47
42.10
2.92
3914
4726
7.709182
TCATCCATCCAAAAGTATTACAGTACG
59.291
37.037
0.00
0.00
0.00
3.67
4165
5058
1.287425
GCCATCTACTTTCCGAACCG
58.713
55.000
0.00
0.00
0.00
4.44
4228
5121
7.569591
GCAGTATCATATAAGCCTTGACGAAAC
60.570
40.741
0.00
0.00
0.00
2.78
4233
5126
7.736447
AAAGCAGTATCATATAAGCCTTGAC
57.264
36.000
0.00
0.00
0.00
3.18
4262
5155
5.303333
GGGTTGACAAAGGACCTTCAAAATA
59.697
40.000
7.34
0.00
33.90
1.40
4296
5189
0.888619
TCAGGACGAAGCTCGAACAT
59.111
50.000
11.64
2.18
43.74
2.71
4339
5232
5.183904
CCGAAATCAAGAGGAACCTCAAAAT
59.816
40.000
20.84
9.13
44.99
1.82
4383
5289
9.406113
GGACTAGGTACAGAAGAGTAGAAAATA
57.594
37.037
0.00
0.00
0.00
1.40
4385
5291
6.373774
CGGACTAGGTACAGAAGAGTAGAAAA
59.626
42.308
0.00
0.00
0.00
2.29
4391
5297
3.717452
ACGGACTAGGTACAGAAGAGT
57.283
47.619
0.00
0.00
0.00
3.24
4400
5306
7.268212
AGATATCTTGGATACGGACTAGGTA
57.732
40.000
0.00
0.00
42.51
3.08
4413
5319
6.420903
CGCGAAATAAGTGAAGATATCTTGGA
59.579
38.462
22.61
6.21
36.11
3.53
4416
5322
5.986135
AGCGCGAAATAAGTGAAGATATCTT
59.014
36.000
17.96
17.96
39.23
2.40
4438
5346
4.272504
TGATTTTAGCAATACAGCCGTAGC
59.727
41.667
0.00
0.00
40.32
3.58
4462
5370
4.842574
TCAGCAGTTATTGGCAATGACTA
58.157
39.130
29.88
16.49
35.77
2.59
4522
5430
4.707105
TGGCATTCTGATATGTCGACAAT
58.293
39.130
24.13
16.56
32.81
2.71
4523
5431
4.135747
TGGCATTCTGATATGTCGACAA
57.864
40.909
24.13
12.36
32.81
3.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.