Multiple sequence alignment - TraesCS2A01G160800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G160800 chr2A 100.000 1619 0 0 910 2528 111916123 111914505 0.000000e+00 2990.0
1 TraesCS2A01G160800 chr2A 95.159 1632 43 14 910 2528 719256602 719258210 0.000000e+00 2543.0
2 TraesCS2A01G160800 chr2A 100.000 737 0 0 1 737 111917032 111916296 0.000000e+00 1362.0
3 TraesCS2A01G160800 chr2A 90.566 318 29 1 1 318 46103335 46103651 1.080000e-113 420.0
4 TraesCS2A01G160800 chr2A 95.833 48 2 0 395 442 113365328 113365375 7.500000e-11 78.7
5 TraesCS2A01G160800 chr6A 96.592 1643 28 9 910 2528 575446917 575448555 0.000000e+00 2699.0
6 TraesCS2A01G160800 chr6A 96.567 1602 29 5 951 2528 41485869 41487468 0.000000e+00 2630.0
7 TraesCS2A01G160800 chr6A 96.394 416 11 2 2116 2528 575494997 575495411 0.000000e+00 682.0
8 TraesCS2A01G160800 chr7A 95.037 1632 45 14 910 2528 70819700 70821308 0.000000e+00 2532.0
9 TraesCS2A01G160800 chr7A 93.485 307 19 1 431 737 47823908 47824213 2.960000e-124 455.0
10 TraesCS2A01G160800 chr3A 95.340 1588 40 14 950 2528 24905393 24903831 0.000000e+00 2492.0
11 TraesCS2A01G160800 chr3A 88.254 315 36 1 4 318 711264912 711264599 2.370000e-100 375.0
12 TraesCS2A01G160800 chr6D 94.373 1635 46 18 910 2528 100359236 100360840 0.000000e+00 2468.0
13 TraesCS2A01G160800 chr6D 93.643 1636 56 19 910 2528 17067427 17069031 0.000000e+00 2401.0
14 TraesCS2A01G160800 chr6D 96.271 295 11 0 443 737 100358866 100359160 3.780000e-133 484.0
15 TraesCS2A01G160800 chr6D 95.918 294 12 0 440 733 17067055 17067348 6.330000e-131 477.0
16 TraesCS2A01G160800 chr2D 94.261 1638 44 23 910 2527 645195022 645196629 0.000000e+00 2459.0
17 TraesCS2A01G160800 chr2D 95.254 295 14 0 443 737 645194647 645194941 3.810000e-128 468.0
18 TraesCS2A01G160800 chr2D 94.915 59 3 0 385 443 111576747 111576689 2.680000e-15 93.5
19 TraesCS2A01G160800 chr2D 100.000 48 0 0 395 442 112309276 112309323 3.460000e-14 89.8
20 TraesCS2A01G160800 chr2D 97.959 49 1 0 395 443 112094125 112094077 4.480000e-13 86.1
21 TraesCS2A01G160800 chr2D 91.667 60 5 0 315 374 111576788 111576729 1.610000e-12 84.2
22 TraesCS2A01G160800 chr3D 94.254 1636 46 21 910 2527 537296717 537298322 0.000000e+00 2457.0
23 TraesCS2A01G160800 chr3D 91.164 713 25 18 1826 2528 579490404 579489720 0.000000e+00 933.0
24 TraesCS2A01G160800 chr3D 90.756 714 23 19 1826 2528 124551946 124551265 0.000000e+00 913.0
25 TraesCS2A01G160800 chr7D 93.501 1631 51 26 912 2527 3770397 3771987 0.000000e+00 2374.0
26 TraesCS2A01G160800 chr7D 88.786 865 41 23 1674 2528 49812838 49813656 0.000000e+00 1009.0
27 TraesCS2A01G160800 chr7D 94.044 319 18 1 1 319 408467024 408466707 1.360000e-132 483.0
28 TraesCS2A01G160800 chr5D 96.929 1400 24 9 910 2300 543865608 543866997 0.000000e+00 2329.0
29 TraesCS2A01G160800 chr5D 94.932 296 14 1 442 737 543865237 543865531 1.770000e-126 462.0
30 TraesCS2A01G160800 chr5B 89.818 1650 76 28 910 2528 696360263 696361851 0.000000e+00 2032.0
31 TraesCS2A01G160800 chr4D 89.468 864 38 22 1675 2528 509408841 509408021 0.000000e+00 1042.0
32 TraesCS2A01G160800 chr4D 94.863 292 15 0 442 733 36561617 36561326 8.240000e-125 457.0
33 TraesCS2A01G160800 chr4B 83.402 729 39 30 1826 2528 663007708 663007036 3.600000e-168 601.0
34 TraesCS2A01G160800 chr4B 93.103 319 21 1 1 319 519500365 519500682 1.370000e-127 466.0
35 TraesCS2A01G160800 chr1A 95.876 291 12 0 443 733 567959234 567958944 2.940000e-129 472.0
36 TraesCS2A01G160800 chr1A 91.536 319 26 1 1 319 491307688 491307371 2.990000e-119 438.0
37 TraesCS2A01G160800 chr5A 94.915 295 14 1 443 737 580202563 580202856 6.370000e-126 460.0
38 TraesCS2A01G160800 chr1D 95.189 291 14 0 443 733 10554226 10554516 6.370000e-126 460.0
39 TraesCS2A01G160800 chr1B 92.476 319 23 1 1 319 473233811 473233494 2.960000e-124 455.0
40 TraesCS2A01G160800 chr6B 85.312 320 42 2 4 319 649735369 649735051 2.430000e-85 326.0
41 TraesCS2A01G160800 chr2B 87.931 58 0 4 385 442 161719036 161718986 7.550000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G160800 chr2A 111914505 111917032 2527 True 2176.0 2990 100.0000 1 2528 2 chr2A.!!$R1 2527
1 TraesCS2A01G160800 chr2A 719256602 719258210 1608 False 2543.0 2543 95.1590 910 2528 1 chr2A.!!$F3 1618
2 TraesCS2A01G160800 chr6A 575446917 575448555 1638 False 2699.0 2699 96.5920 910 2528 1 chr6A.!!$F2 1618
3 TraesCS2A01G160800 chr6A 41485869 41487468 1599 False 2630.0 2630 96.5670 951 2528 1 chr6A.!!$F1 1577
4 TraesCS2A01G160800 chr7A 70819700 70821308 1608 False 2532.0 2532 95.0370 910 2528 1 chr7A.!!$F2 1618
5 TraesCS2A01G160800 chr3A 24903831 24905393 1562 True 2492.0 2492 95.3400 950 2528 1 chr3A.!!$R1 1578
6 TraesCS2A01G160800 chr6D 100358866 100360840 1974 False 1476.0 2468 95.3220 443 2528 2 chr6D.!!$F2 2085
7 TraesCS2A01G160800 chr6D 17067055 17069031 1976 False 1439.0 2401 94.7805 440 2528 2 chr6D.!!$F1 2088
8 TraesCS2A01G160800 chr2D 645194647 645196629 1982 False 1463.5 2459 94.7575 443 2527 2 chr2D.!!$F2 2084
9 TraesCS2A01G160800 chr3D 537296717 537298322 1605 False 2457.0 2457 94.2540 910 2527 1 chr3D.!!$F1 1617
10 TraesCS2A01G160800 chr3D 579489720 579490404 684 True 933.0 933 91.1640 1826 2528 1 chr3D.!!$R2 702
11 TraesCS2A01G160800 chr3D 124551265 124551946 681 True 913.0 913 90.7560 1826 2528 1 chr3D.!!$R1 702
12 TraesCS2A01G160800 chr7D 3770397 3771987 1590 False 2374.0 2374 93.5010 912 2527 1 chr7D.!!$F1 1615
13 TraesCS2A01G160800 chr7D 49812838 49813656 818 False 1009.0 1009 88.7860 1674 2528 1 chr7D.!!$F2 854
14 TraesCS2A01G160800 chr5D 543865237 543866997 1760 False 1395.5 2329 95.9305 442 2300 2 chr5D.!!$F1 1858
15 TraesCS2A01G160800 chr5B 696360263 696361851 1588 False 2032.0 2032 89.8180 910 2528 1 chr5B.!!$F1 1618
16 TraesCS2A01G160800 chr4D 509408021 509408841 820 True 1042.0 1042 89.4680 1675 2528 1 chr4D.!!$R2 853
17 TraesCS2A01G160800 chr4B 663007036 663007708 672 True 601.0 601 83.4020 1826 2528 1 chr4B.!!$R1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.038343 TCGTTTCGTTAACCCCCTCG 60.038 55.0 0.00 0.0 32.92 4.63 F
626 627 0.107066 TATGACACGCGGGACCTAGA 60.107 55.0 19.19 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 1300 0.984230 ATTGAGCTCTTGGGTTCCGA 59.016 50.0 16.19 0.0 0.00 4.55 R
2331 2442 2.698797 CCCCGTGGAACTATGAGTATGT 59.301 50.0 0.00 0.0 31.75 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.494632 TCAACTCGATCATACGCTTTAGA 57.505 39.130 0.00 0.00 0.00 2.10
23 24 5.271625 TCAACTCGATCATACGCTTTAGAC 58.728 41.667 0.00 0.00 0.00 2.59
24 25 4.895224 ACTCGATCATACGCTTTAGACA 57.105 40.909 0.00 0.00 0.00 3.41
25 26 5.244785 ACTCGATCATACGCTTTAGACAA 57.755 39.130 0.00 0.00 0.00 3.18
26 27 5.274718 ACTCGATCATACGCTTTAGACAAG 58.725 41.667 0.00 0.00 0.00 3.16
27 28 5.163642 ACTCGATCATACGCTTTAGACAAGT 60.164 40.000 0.00 0.00 0.00 3.16
28 29 5.271625 TCGATCATACGCTTTAGACAAGTC 58.728 41.667 0.00 0.00 0.00 3.01
29 30 4.144902 CGATCATACGCTTTAGACAAGTCG 59.855 45.833 0.00 0.00 34.09 4.18
30 31 4.690184 TCATACGCTTTAGACAAGTCGA 57.310 40.909 0.00 0.00 34.09 4.20
31 32 4.659088 TCATACGCTTTAGACAAGTCGAG 58.341 43.478 0.00 0.00 34.09 4.04
32 33 1.699343 ACGCTTTAGACAAGTCGAGC 58.301 50.000 12.84 12.84 34.21 5.03
33 34 1.269998 ACGCTTTAGACAAGTCGAGCT 59.730 47.619 17.46 0.00 34.85 4.09
34 35 2.288273 ACGCTTTAGACAAGTCGAGCTT 60.288 45.455 17.46 10.13 38.08 3.74
42 43 3.516578 AAGTCGAGCTTGTAGGCAC 57.483 52.632 0.00 0.00 35.80 5.01
43 44 0.679505 AAGTCGAGCTTGTAGGCACA 59.320 50.000 0.00 0.00 35.80 4.57
44 45 0.679505 AGTCGAGCTTGTAGGCACAA 59.320 50.000 0.00 3.21 42.39 3.33
45 46 1.070134 AGTCGAGCTTGTAGGCACAAA 59.930 47.619 0.00 0.00 43.92 2.83
46 47 1.461127 GTCGAGCTTGTAGGCACAAAG 59.539 52.381 0.00 0.00 43.92 2.77
47 48 1.343142 TCGAGCTTGTAGGCACAAAGA 59.657 47.619 0.00 0.98 43.92 2.52
48 49 1.728971 CGAGCTTGTAGGCACAAAGAG 59.271 52.381 0.00 0.00 43.92 2.85
49 50 1.466558 GAGCTTGTAGGCACAAAGAGC 59.533 52.381 0.00 4.74 43.92 4.09
50 51 1.202806 AGCTTGTAGGCACAAAGAGCA 60.203 47.619 11.83 0.00 43.92 4.26
51 52 1.198637 GCTTGTAGGCACAAAGAGCAG 59.801 52.381 4.52 0.00 43.92 4.24
52 53 1.808945 CTTGTAGGCACAAAGAGCAGG 59.191 52.381 4.52 0.00 43.92 4.85
53 54 1.055849 TGTAGGCACAAAGAGCAGGA 58.944 50.000 0.00 0.00 0.00 3.86
54 55 1.630369 TGTAGGCACAAAGAGCAGGAT 59.370 47.619 0.00 0.00 0.00 3.24
55 56 2.284190 GTAGGCACAAAGAGCAGGATC 58.716 52.381 0.00 0.00 0.00 3.36
56 57 0.694771 AGGCACAAAGAGCAGGATCA 59.305 50.000 0.00 0.00 0.00 2.92
57 58 1.284198 AGGCACAAAGAGCAGGATCAT 59.716 47.619 0.00 0.00 0.00 2.45
58 59 2.097825 GGCACAAAGAGCAGGATCATT 58.902 47.619 0.00 0.00 0.00 2.57
59 60 2.494870 GGCACAAAGAGCAGGATCATTT 59.505 45.455 0.00 0.00 0.00 2.32
60 61 3.056322 GGCACAAAGAGCAGGATCATTTT 60.056 43.478 0.00 0.00 0.00 1.82
61 62 4.171754 GCACAAAGAGCAGGATCATTTTC 58.828 43.478 0.00 0.00 0.00 2.29
62 63 4.741342 CACAAAGAGCAGGATCATTTTCC 58.259 43.478 0.00 0.00 35.90 3.13
64 65 5.047519 CACAAAGAGCAGGATCATTTTCCTT 60.048 40.000 0.00 0.00 43.88 3.36
65 66 5.184671 ACAAAGAGCAGGATCATTTTCCTTC 59.815 40.000 0.00 0.00 43.88 3.46
66 67 4.581309 AGAGCAGGATCATTTTCCTTCA 57.419 40.909 0.00 0.00 43.88 3.02
67 68 4.525024 AGAGCAGGATCATTTTCCTTCAG 58.475 43.478 0.00 0.00 43.88 3.02
68 69 4.018597 AGAGCAGGATCATTTTCCTTCAGT 60.019 41.667 0.00 0.00 43.88 3.41
69 70 4.015084 AGCAGGATCATTTTCCTTCAGTG 58.985 43.478 0.00 0.00 43.88 3.66
70 71 4.012374 GCAGGATCATTTTCCTTCAGTGA 58.988 43.478 0.00 0.00 43.88 3.41
71 72 4.142513 GCAGGATCATTTTCCTTCAGTGAC 60.143 45.833 0.00 0.00 43.88 3.67
72 73 5.251764 CAGGATCATTTTCCTTCAGTGACT 58.748 41.667 0.00 0.00 43.88 3.41
73 74 5.123502 CAGGATCATTTTCCTTCAGTGACTG 59.876 44.000 6.18 6.18 43.88 3.51
74 75 5.013495 AGGATCATTTTCCTTCAGTGACTGA 59.987 40.000 11.93 11.93 43.88 3.41
75 76 5.707298 GGATCATTTTCCTTCAGTGACTGAA 59.293 40.000 24.83 24.83 46.50 3.02
87 88 5.359756 TCAGTGACTGAATATGGTGTATGC 58.640 41.667 13.74 0.00 37.57 3.14
88 89 5.104982 TCAGTGACTGAATATGGTGTATGCA 60.105 40.000 13.74 0.00 37.57 3.96
89 90 5.761726 CAGTGACTGAATATGGTGTATGCAT 59.238 40.000 6.79 3.79 32.44 3.96
90 91 6.261603 CAGTGACTGAATATGGTGTATGCATT 59.738 38.462 6.79 0.00 32.44 3.56
91 92 6.484643 AGTGACTGAATATGGTGTATGCATTC 59.515 38.462 3.54 0.00 0.00 2.67
92 93 5.466393 TGACTGAATATGGTGTATGCATTCG 59.534 40.000 3.54 0.00 0.00 3.34
93 94 5.610398 ACTGAATATGGTGTATGCATTCGA 58.390 37.500 3.54 0.00 0.00 3.71
94 95 6.054941 ACTGAATATGGTGTATGCATTCGAA 58.945 36.000 3.54 0.00 0.00 3.71
95 96 6.542005 ACTGAATATGGTGTATGCATTCGAAA 59.458 34.615 3.54 0.00 0.00 3.46
96 97 6.958255 TGAATATGGTGTATGCATTCGAAAG 58.042 36.000 3.54 0.00 0.00 2.62
97 98 3.698029 ATGGTGTATGCATTCGAAAGC 57.302 42.857 17.98 17.98 0.00 3.51
98 99 2.431454 TGGTGTATGCATTCGAAAGCA 58.569 42.857 27.85 27.85 45.92 3.91
99 100 2.816672 TGGTGTATGCATTCGAAAGCAA 59.183 40.909 29.11 16.64 44.88 3.91
100 101 3.443329 TGGTGTATGCATTCGAAAGCAAT 59.557 39.130 29.11 19.60 44.88 3.56
101 102 4.082300 TGGTGTATGCATTCGAAAGCAATT 60.082 37.500 29.11 17.59 44.88 2.32
102 103 5.124617 TGGTGTATGCATTCGAAAGCAATTA 59.875 36.000 29.11 16.62 44.88 1.40
103 104 6.183360 TGGTGTATGCATTCGAAAGCAATTAT 60.183 34.615 29.11 16.58 44.88 1.28
104 105 6.360681 GGTGTATGCATTCGAAAGCAATTATC 59.639 38.462 29.11 18.03 44.88 1.75
105 106 6.085458 GTGTATGCATTCGAAAGCAATTATCG 59.915 38.462 29.11 0.00 44.88 2.92
106 107 4.873768 TGCATTCGAAAGCAATTATCGA 57.126 36.364 24.34 0.00 43.18 3.59
115 116 8.365399 TCGAAAGCAATTATCGAATTATCTGT 57.635 30.769 0.00 0.00 42.07 3.41
116 117 9.471084 TCGAAAGCAATTATCGAATTATCTGTA 57.529 29.630 0.00 0.00 42.07 2.74
126 127 9.871238 TTATCGAATTATCTGTAATAAGCCTCC 57.129 33.333 0.00 0.00 30.42 4.30
127 128 6.698380 TCGAATTATCTGTAATAAGCCTCCC 58.302 40.000 0.00 0.00 30.42 4.30
128 129 6.497259 TCGAATTATCTGTAATAAGCCTCCCT 59.503 38.462 0.00 0.00 30.42 4.20
129 130 7.672660 TCGAATTATCTGTAATAAGCCTCCCTA 59.327 37.037 0.00 0.00 30.42 3.53
130 131 7.976734 CGAATTATCTGTAATAAGCCTCCCTAG 59.023 40.741 0.00 0.00 30.42 3.02
131 132 8.974292 AATTATCTGTAATAAGCCTCCCTAGA 57.026 34.615 0.00 0.00 30.42 2.43
132 133 8.974292 ATTATCTGTAATAAGCCTCCCTAGAA 57.026 34.615 0.00 0.00 0.00 2.10
133 134 6.673839 ATCTGTAATAAGCCTCCCTAGAAC 57.326 41.667 0.00 0.00 0.00 3.01
134 135 5.525484 TCTGTAATAAGCCTCCCTAGAACA 58.475 41.667 0.00 0.00 0.00 3.18
135 136 5.962031 TCTGTAATAAGCCTCCCTAGAACAA 59.038 40.000 0.00 0.00 0.00 2.83
136 137 6.442564 TCTGTAATAAGCCTCCCTAGAACAAA 59.557 38.462 0.00 0.00 0.00 2.83
137 138 7.023171 TGTAATAAGCCTCCCTAGAACAAAA 57.977 36.000 0.00 0.00 0.00 2.44
138 139 7.110155 TGTAATAAGCCTCCCTAGAACAAAAG 58.890 38.462 0.00 0.00 0.00 2.27
139 140 2.498644 AGCCTCCCTAGAACAAAAGC 57.501 50.000 0.00 0.00 0.00 3.51
140 141 1.705186 AGCCTCCCTAGAACAAAAGCA 59.295 47.619 0.00 0.00 0.00 3.91
141 142 1.813178 GCCTCCCTAGAACAAAAGCAC 59.187 52.381 0.00 0.00 0.00 4.40
142 143 2.553247 GCCTCCCTAGAACAAAAGCACT 60.553 50.000 0.00 0.00 0.00 4.40
143 144 3.339141 CCTCCCTAGAACAAAAGCACTC 58.661 50.000 0.00 0.00 0.00 3.51
144 145 3.008485 CCTCCCTAGAACAAAAGCACTCT 59.992 47.826 0.00 0.00 0.00 3.24
145 146 3.999663 CTCCCTAGAACAAAAGCACTCTG 59.000 47.826 0.00 0.00 0.00 3.35
146 147 3.646162 TCCCTAGAACAAAAGCACTCTGA 59.354 43.478 0.00 0.00 0.00 3.27
147 148 4.287067 TCCCTAGAACAAAAGCACTCTGAT 59.713 41.667 0.00 0.00 0.00 2.90
148 149 5.006386 CCCTAGAACAAAAGCACTCTGATT 58.994 41.667 0.00 0.00 0.00 2.57
149 150 5.474876 CCCTAGAACAAAAGCACTCTGATTT 59.525 40.000 0.00 0.00 37.61 2.17
150 151 6.015940 CCCTAGAACAAAAGCACTCTGATTTT 60.016 38.462 0.00 0.00 45.49 1.82
151 152 7.080724 CCTAGAACAAAAGCACTCTGATTTTC 58.919 38.462 0.00 0.00 41.47 2.29
152 153 6.455360 AGAACAAAAGCACTCTGATTTTCA 57.545 33.333 0.00 0.00 41.47 2.69
153 154 6.501781 AGAACAAAAGCACTCTGATTTTCAG 58.498 36.000 0.00 0.00 41.47 3.02
165 166 4.831674 TGATTTTCAGAGATCAGCTCCA 57.168 40.909 0.00 0.00 45.10 3.86
166 167 4.511527 TGATTTTCAGAGATCAGCTCCAC 58.488 43.478 0.00 0.00 45.10 4.02
167 168 4.019950 TGATTTTCAGAGATCAGCTCCACA 60.020 41.667 0.00 0.00 45.10 4.17
168 169 4.356405 TTTTCAGAGATCAGCTCCACAA 57.644 40.909 0.00 0.00 45.10 3.33
169 170 3.606595 TTCAGAGATCAGCTCCACAAG 57.393 47.619 0.00 0.00 45.10 3.16
178 179 3.488423 CTCCACAAGCAGGGGTCT 58.512 61.111 0.00 0.00 43.37 3.85
179 180 1.298014 CTCCACAAGCAGGGGTCTC 59.702 63.158 0.00 0.00 43.37 3.36
180 181 1.461268 TCCACAAGCAGGGGTCTCA 60.461 57.895 0.00 0.00 43.37 3.27
181 182 1.059584 TCCACAAGCAGGGGTCTCAA 61.060 55.000 0.00 0.00 43.37 3.02
182 183 0.890996 CCACAAGCAGGGGTCTCAAC 60.891 60.000 0.00 0.00 35.41 3.18
183 184 0.890996 CACAAGCAGGGGTCTCAACC 60.891 60.000 0.00 0.00 45.65 3.77
184 185 1.062488 ACAAGCAGGGGTCTCAACCT 61.062 55.000 0.00 0.00 45.66 3.50
185 186 0.984230 CAAGCAGGGGTCTCAACCTA 59.016 55.000 0.00 0.00 45.66 3.08
186 187 1.561542 CAAGCAGGGGTCTCAACCTAT 59.438 52.381 0.00 0.00 45.66 2.57
187 188 1.972588 AGCAGGGGTCTCAACCTATT 58.027 50.000 0.00 0.00 45.66 1.73
188 189 3.130734 AGCAGGGGTCTCAACCTATTA 57.869 47.619 0.00 0.00 45.66 0.98
189 190 3.460825 AGCAGGGGTCTCAACCTATTAA 58.539 45.455 0.00 0.00 45.66 1.40
190 191 3.200165 AGCAGGGGTCTCAACCTATTAAC 59.800 47.826 0.00 0.00 45.66 2.01
191 192 3.684697 GCAGGGGTCTCAACCTATTAACC 60.685 52.174 0.00 0.00 45.66 2.85
192 193 3.521937 CAGGGGTCTCAACCTATTAACCA 59.478 47.826 0.00 0.00 45.66 3.67
193 194 4.166144 CAGGGGTCTCAACCTATTAACCAT 59.834 45.833 0.00 0.00 45.66 3.55
194 195 4.166144 AGGGGTCTCAACCTATTAACCATG 59.834 45.833 0.00 0.00 45.66 3.66
195 196 3.883489 GGGTCTCAACCTATTAACCATGC 59.117 47.826 0.00 0.00 45.66 4.06
196 197 4.523083 GGTCTCAACCTATTAACCATGCA 58.477 43.478 0.00 0.00 42.80 3.96
197 198 4.335594 GGTCTCAACCTATTAACCATGCAC 59.664 45.833 0.00 0.00 42.80 4.57
198 199 5.186198 GTCTCAACCTATTAACCATGCACT 58.814 41.667 0.00 0.00 0.00 4.40
199 200 5.648092 GTCTCAACCTATTAACCATGCACTT 59.352 40.000 0.00 0.00 0.00 3.16
200 201 6.151144 GTCTCAACCTATTAACCATGCACTTT 59.849 38.462 0.00 0.00 0.00 2.66
201 202 6.150976 TCTCAACCTATTAACCATGCACTTTG 59.849 38.462 0.00 0.00 0.00 2.77
202 203 6.007076 TCAACCTATTAACCATGCACTTTGA 58.993 36.000 0.00 0.00 0.00 2.69
203 204 6.491745 TCAACCTATTAACCATGCACTTTGAA 59.508 34.615 0.00 0.00 0.00 2.69
204 205 6.909550 ACCTATTAACCATGCACTTTGAAA 57.090 33.333 0.00 0.00 0.00 2.69
205 206 6.687604 ACCTATTAACCATGCACTTTGAAAC 58.312 36.000 0.00 0.00 0.00 2.78
206 207 6.266558 ACCTATTAACCATGCACTTTGAAACA 59.733 34.615 0.00 0.00 0.00 2.83
207 208 7.151308 CCTATTAACCATGCACTTTGAAACAA 58.849 34.615 0.00 0.00 0.00 2.83
208 209 7.818930 CCTATTAACCATGCACTTTGAAACAAT 59.181 33.333 0.00 0.00 0.00 2.71
209 210 9.206870 CTATTAACCATGCACTTTGAAACAATT 57.793 29.630 0.00 0.00 0.00 2.32
210 211 7.856145 TTAACCATGCACTTTGAAACAATTT 57.144 28.000 0.00 0.00 0.00 1.82
211 212 6.756299 AACCATGCACTTTGAAACAATTTT 57.244 29.167 0.00 0.00 0.00 1.82
212 213 7.856145 AACCATGCACTTTGAAACAATTTTA 57.144 28.000 0.00 0.00 0.00 1.52
213 214 8.449251 AACCATGCACTTTGAAACAATTTTAT 57.551 26.923 0.00 0.00 0.00 1.40
214 215 9.553064 AACCATGCACTTTGAAACAATTTTATA 57.447 25.926 0.00 0.00 0.00 0.98
215 216 9.553064 ACCATGCACTTTGAAACAATTTTATAA 57.447 25.926 0.00 0.00 0.00 0.98
219 220 9.383519 TGCACTTTGAAACAATTTTATAAACCA 57.616 25.926 0.00 0.00 0.00 3.67
220 221 9.644993 GCACTTTGAAACAATTTTATAAACCAC 57.355 29.630 0.00 0.00 0.00 4.16
239 240 6.834168 ACCACATTACAAAGACTAATTGGG 57.166 37.500 0.00 0.00 32.02 4.12
240 241 5.185056 ACCACATTACAAAGACTAATTGGGC 59.815 40.000 0.00 0.00 32.02 5.36
241 242 5.331902 CACATTACAAAGACTAATTGGGCG 58.668 41.667 0.00 0.00 32.02 6.13
242 243 5.123186 CACATTACAAAGACTAATTGGGCGA 59.877 40.000 0.00 0.00 32.02 5.54
243 244 5.708230 ACATTACAAAGACTAATTGGGCGAA 59.292 36.000 0.00 0.00 32.02 4.70
244 245 6.207810 ACATTACAAAGACTAATTGGGCGAAA 59.792 34.615 0.00 0.00 32.02 3.46
245 246 4.766404 ACAAAGACTAATTGGGCGAAAG 57.234 40.909 0.00 0.00 32.02 2.62
246 247 4.142038 ACAAAGACTAATTGGGCGAAAGT 58.858 39.130 0.00 0.00 32.02 2.66
247 248 4.215613 ACAAAGACTAATTGGGCGAAAGTC 59.784 41.667 6.10 6.10 37.44 3.01
248 249 3.983044 AGACTAATTGGGCGAAAGTCT 57.017 42.857 9.87 9.87 41.51 3.24
249 250 4.287766 AGACTAATTGGGCGAAAGTCTT 57.712 40.909 9.87 0.00 43.25 3.01
250 251 4.652822 AGACTAATTGGGCGAAAGTCTTT 58.347 39.130 9.87 0.00 43.25 2.52
251 252 5.070685 AGACTAATTGGGCGAAAGTCTTTT 58.929 37.500 9.87 0.00 43.25 2.27
252 253 5.535030 AGACTAATTGGGCGAAAGTCTTTTT 59.465 36.000 9.87 0.00 43.25 1.94
253 254 6.713450 AGACTAATTGGGCGAAAGTCTTTTTA 59.287 34.615 9.87 0.00 43.25 1.52
254 255 7.229907 AGACTAATTGGGCGAAAGTCTTTTTAA 59.770 33.333 9.87 0.00 43.25 1.52
255 256 7.892609 ACTAATTGGGCGAAAGTCTTTTTAAT 58.107 30.769 0.00 0.00 34.89 1.40
256 257 8.364894 ACTAATTGGGCGAAAGTCTTTTTAATT 58.635 29.630 0.00 5.67 34.89 1.40
257 258 7.652300 AATTGGGCGAAAGTCTTTTTAATTC 57.348 32.000 0.00 0.00 34.89 2.17
258 259 6.399639 TTGGGCGAAAGTCTTTTTAATTCT 57.600 33.333 0.00 0.00 34.89 2.40
259 260 6.399639 TGGGCGAAAGTCTTTTTAATTCTT 57.600 33.333 0.00 0.00 34.89 2.52
260 261 6.212955 TGGGCGAAAGTCTTTTTAATTCTTG 58.787 36.000 0.00 0.00 34.89 3.02
261 262 6.183360 TGGGCGAAAGTCTTTTTAATTCTTGT 60.183 34.615 0.00 0.00 34.89 3.16
262 263 6.143919 GGGCGAAAGTCTTTTTAATTCTTGTG 59.856 38.462 0.00 0.00 34.89 3.33
263 264 6.143919 GGCGAAAGTCTTTTTAATTCTTGTGG 59.856 38.462 0.00 0.00 0.00 4.17
264 265 6.915843 GCGAAAGTCTTTTTAATTCTTGTGGA 59.084 34.615 0.00 0.00 0.00 4.02
265 266 7.595130 GCGAAAGTCTTTTTAATTCTTGTGGAT 59.405 33.333 0.00 0.00 0.00 3.41
266 267 8.905702 CGAAAGTCTTTTTAATTCTTGTGGATG 58.094 33.333 0.00 0.00 0.00 3.51
267 268 8.593492 AAAGTCTTTTTAATTCTTGTGGATGC 57.407 30.769 0.00 0.00 0.00 3.91
268 269 7.530426 AGTCTTTTTAATTCTTGTGGATGCT 57.470 32.000 0.00 0.00 0.00 3.79
269 270 7.373493 AGTCTTTTTAATTCTTGTGGATGCTG 58.627 34.615 0.00 0.00 0.00 4.41
270 271 7.014615 AGTCTTTTTAATTCTTGTGGATGCTGT 59.985 33.333 0.00 0.00 0.00 4.40
271 272 8.296713 GTCTTTTTAATTCTTGTGGATGCTGTA 58.703 33.333 0.00 0.00 0.00 2.74
272 273 9.023962 TCTTTTTAATTCTTGTGGATGCTGTAT 57.976 29.630 0.00 0.00 0.00 2.29
273 274 9.643693 CTTTTTAATTCTTGTGGATGCTGTATT 57.356 29.630 0.00 0.00 0.00 1.89
274 275 9.995003 TTTTTAATTCTTGTGGATGCTGTATTT 57.005 25.926 0.00 0.00 0.00 1.40
275 276 9.995003 TTTTAATTCTTGTGGATGCTGTATTTT 57.005 25.926 0.00 0.00 0.00 1.82
276 277 9.638239 TTTAATTCTTGTGGATGCTGTATTTTC 57.362 29.630 0.00 0.00 0.00 2.29
277 278 4.944962 TCTTGTGGATGCTGTATTTTCG 57.055 40.909 0.00 0.00 0.00 3.46
278 279 3.689161 TCTTGTGGATGCTGTATTTTCGG 59.311 43.478 0.00 0.00 0.00 4.30
279 280 3.342377 TGTGGATGCTGTATTTTCGGA 57.658 42.857 0.00 0.00 0.00 4.55
280 281 3.680490 TGTGGATGCTGTATTTTCGGAA 58.320 40.909 0.00 0.00 0.00 4.30
281 282 4.269183 TGTGGATGCTGTATTTTCGGAAT 58.731 39.130 0.00 0.00 0.00 3.01
282 283 4.335315 TGTGGATGCTGTATTTTCGGAATC 59.665 41.667 0.00 0.00 0.00 2.52
283 284 4.335315 GTGGATGCTGTATTTTCGGAATCA 59.665 41.667 0.00 0.00 31.98 2.57
284 285 4.946772 TGGATGCTGTATTTTCGGAATCAA 59.053 37.500 0.00 0.00 31.98 2.57
285 286 5.163663 TGGATGCTGTATTTTCGGAATCAAC 60.164 40.000 0.00 0.00 31.98 3.18
286 287 5.163663 GGATGCTGTATTTTCGGAATCAACA 60.164 40.000 0.00 0.00 31.98 3.33
287 288 5.041951 TGCTGTATTTTCGGAATCAACAC 57.958 39.130 0.00 0.00 0.00 3.32
288 289 4.083003 TGCTGTATTTTCGGAATCAACACC 60.083 41.667 0.00 0.00 0.00 4.16
289 290 4.083003 GCTGTATTTTCGGAATCAACACCA 60.083 41.667 0.00 0.00 0.00 4.17
290 291 5.393027 GCTGTATTTTCGGAATCAACACCAT 60.393 40.000 0.00 0.00 0.00 3.55
291 292 6.189677 TGTATTTTCGGAATCAACACCATC 57.810 37.500 0.00 0.00 0.00 3.51
292 293 3.822594 TTTTCGGAATCAACACCATCG 57.177 42.857 0.00 0.00 0.00 3.84
293 294 2.465860 TTCGGAATCAACACCATCGT 57.534 45.000 0.00 0.00 0.00 3.73
294 295 2.004583 TCGGAATCAACACCATCGTC 57.995 50.000 0.00 0.00 0.00 4.20
295 296 0.645355 CGGAATCAACACCATCGTCG 59.355 55.000 0.00 0.00 0.00 5.12
296 297 1.722011 GGAATCAACACCATCGTCGT 58.278 50.000 0.00 0.00 0.00 4.34
297 298 2.073816 GGAATCAACACCATCGTCGTT 58.926 47.619 0.00 0.00 0.00 3.85
298 299 2.482721 GGAATCAACACCATCGTCGTTT 59.517 45.455 0.00 0.00 0.00 3.60
299 300 3.424433 GGAATCAACACCATCGTCGTTTC 60.424 47.826 0.00 0.00 0.00 2.78
300 301 1.133407 TCAACACCATCGTCGTTTCG 58.867 50.000 0.00 0.00 0.00 3.46
301 302 0.856641 CAACACCATCGTCGTTTCGT 59.143 50.000 0.00 0.00 0.00 3.85
302 303 1.259507 CAACACCATCGTCGTTTCGTT 59.740 47.619 0.00 0.00 0.00 3.85
303 304 2.420628 ACACCATCGTCGTTTCGTTA 57.579 45.000 0.00 0.00 0.00 3.18
304 305 2.741612 ACACCATCGTCGTTTCGTTAA 58.258 42.857 0.00 0.00 0.00 2.01
305 306 2.472488 ACACCATCGTCGTTTCGTTAAC 59.528 45.455 0.00 0.00 0.00 2.01
306 307 2.061028 ACCATCGTCGTTTCGTTAACC 58.939 47.619 0.00 0.00 32.92 2.85
307 308 1.391144 CCATCGTCGTTTCGTTAACCC 59.609 52.381 0.00 0.00 32.92 4.11
308 309 1.391144 CATCGTCGTTTCGTTAACCCC 59.609 52.381 0.00 0.00 32.92 4.95
309 310 0.319469 TCGTCGTTTCGTTAACCCCC 60.319 55.000 0.00 0.00 32.92 5.40
310 311 0.319813 CGTCGTTTCGTTAACCCCCT 60.320 55.000 0.00 0.00 32.92 4.79
311 312 1.432514 GTCGTTTCGTTAACCCCCTC 58.567 55.000 0.00 0.00 32.92 4.30
312 313 0.038343 TCGTTTCGTTAACCCCCTCG 60.038 55.000 0.00 0.00 32.92 4.63
313 314 1.015607 CGTTTCGTTAACCCCCTCGG 61.016 60.000 0.00 0.00 32.92 4.63
331 332 4.450122 GCATGCGCCGTGTCACTG 62.450 66.667 4.18 0.00 0.00 3.66
332 333 2.738139 CATGCGCCGTGTCACTGA 60.738 61.111 4.18 0.00 0.00 3.41
333 334 2.102438 CATGCGCCGTGTCACTGAT 61.102 57.895 4.18 0.00 0.00 2.90
334 335 2.102438 ATGCGCCGTGTCACTGATG 61.102 57.895 4.18 0.00 0.00 3.07
335 336 4.152625 GCGCCGTGTCACTGATGC 62.153 66.667 0.00 0.00 0.00 3.91
336 337 3.842126 CGCCGTGTCACTGATGCG 61.842 66.667 0.65 6.54 35.81 4.73
337 338 2.738521 GCCGTGTCACTGATGCGT 60.739 61.111 0.65 0.00 0.00 5.24
338 339 3.015293 GCCGTGTCACTGATGCGTG 62.015 63.158 0.65 0.00 36.25 5.34
339 340 2.382746 CCGTGTCACTGATGCGTGG 61.383 63.158 0.65 0.00 35.63 4.94
340 341 2.863153 GTGTCACTGATGCGTGGC 59.137 61.111 0.00 0.00 39.86 5.01
341 342 1.960763 GTGTCACTGATGCGTGGCA 60.961 57.895 0.00 0.00 46.26 4.92
342 343 1.668793 TGTCACTGATGCGTGGCAG 60.669 57.895 0.00 0.00 43.87 4.85
343 344 1.669115 GTCACTGATGCGTGGCAGT 60.669 57.895 0.00 0.00 43.65 4.40
344 345 1.071299 TCACTGATGCGTGGCAGTT 59.929 52.632 0.00 0.00 43.65 3.16
345 346 0.320050 TCACTGATGCGTGGCAGTTA 59.680 50.000 0.00 0.00 43.65 2.24
346 347 0.443869 CACTGATGCGTGGCAGTTAC 59.556 55.000 0.00 0.00 43.65 2.50
347 348 0.673644 ACTGATGCGTGGCAGTTACC 60.674 55.000 0.00 0.00 43.65 2.85
348 349 1.369091 CTGATGCGTGGCAGTTACCC 61.369 60.000 0.00 0.00 43.65 3.69
349 350 2.435938 ATGCGTGGCAGTTACCCG 60.436 61.111 0.00 0.00 43.65 5.28
352 353 2.574929 CGTGGCAGTTACCCGCTA 59.425 61.111 0.00 0.00 0.00 4.26
353 354 1.079681 CGTGGCAGTTACCCGCTAA 60.080 57.895 0.00 0.00 0.00 3.09
354 355 0.461339 CGTGGCAGTTACCCGCTAAT 60.461 55.000 0.00 0.00 0.00 1.73
355 356 1.202440 CGTGGCAGTTACCCGCTAATA 60.202 52.381 0.00 0.00 0.00 0.98
356 357 2.739287 CGTGGCAGTTACCCGCTAATAA 60.739 50.000 0.00 0.00 0.00 1.40
357 358 2.610833 GTGGCAGTTACCCGCTAATAAC 59.389 50.000 0.00 0.00 0.00 1.89
358 359 2.236644 TGGCAGTTACCCGCTAATAACA 59.763 45.455 0.00 0.00 34.36 2.41
359 360 3.118186 TGGCAGTTACCCGCTAATAACAT 60.118 43.478 0.00 0.00 34.36 2.71
360 361 3.250040 GGCAGTTACCCGCTAATAACATG 59.750 47.826 0.00 0.00 34.36 3.21
361 362 3.875134 GCAGTTACCCGCTAATAACATGT 59.125 43.478 0.00 0.00 34.36 3.21
362 363 5.051816 GCAGTTACCCGCTAATAACATGTA 58.948 41.667 0.00 0.00 34.36 2.29
363 364 5.699458 GCAGTTACCCGCTAATAACATGTAT 59.301 40.000 0.00 0.00 34.36 2.29
364 365 6.204108 GCAGTTACCCGCTAATAACATGTATT 59.796 38.462 0.00 2.47 34.36 1.89
365 366 7.385752 GCAGTTACCCGCTAATAACATGTATTA 59.614 37.037 0.00 3.52 34.36 0.98
366 367 9.431887 CAGTTACCCGCTAATAACATGTATTAT 57.568 33.333 0.00 0.00 34.36 1.28
367 368 9.431887 AGTTACCCGCTAATAACATGTATTATG 57.568 33.333 0.00 1.03 34.36 1.90
368 369 9.426837 GTTACCCGCTAATAACATGTATTATGA 57.573 33.333 0.00 0.00 32.56 2.15
371 372 9.515226 ACCCGCTAATAACATGTATTATGATTT 57.485 29.630 0.00 0.00 0.00 2.17
401 402 8.862325 TTCCAAAGAACATGTACTATGATTGT 57.138 30.769 0.00 0.00 0.00 2.71
402 403 8.862325 TCCAAAGAACATGTACTATGATTGTT 57.138 30.769 0.00 0.00 33.47 2.83
403 404 9.952030 TCCAAAGAACATGTACTATGATTGTTA 57.048 29.630 0.00 0.00 31.09 2.41
418 419 6.895607 TGATTGTTAATCAAAGCATGCATG 57.104 33.333 22.70 22.70 44.47 4.06
419 420 5.728351 ATTGTTAATCAAAGCATGCATGC 57.272 34.783 38.60 38.60 44.59 4.06
420 421 5.179533 ATTGTTAATCAAAGCATGCATGCA 58.820 33.333 43.55 28.69 45.61 3.96
421 422 5.820423 ATTGTTAATCAAAGCATGCATGCAT 59.180 32.000 43.55 34.38 45.61 3.96
422 423 6.317642 ATTGTTAATCAAAGCATGCATGCATT 59.682 30.769 43.55 37.29 45.61 3.56
434 435 2.048444 CATGCATTGCTAGGGTGACT 57.952 50.000 10.49 0.00 0.00 3.41
435 436 1.945394 CATGCATTGCTAGGGTGACTC 59.055 52.381 10.49 0.00 0.00 3.36
436 437 0.983467 TGCATTGCTAGGGTGACTCA 59.017 50.000 10.49 0.00 0.00 3.41
437 438 1.561076 TGCATTGCTAGGGTGACTCAT 59.439 47.619 10.49 0.00 0.00 2.90
438 439 1.945394 GCATTGCTAGGGTGACTCATG 59.055 52.381 0.16 0.00 0.00 3.07
463 464 2.027192 GGGTCAATAGCTCCTGTGTGAA 60.027 50.000 0.00 0.00 0.00 3.18
464 465 3.559171 GGGTCAATAGCTCCTGTGTGAAA 60.559 47.826 0.00 0.00 0.00 2.69
506 507 0.385473 GTGCGACGTTGTTGGAATGG 60.385 55.000 4.37 0.00 0.00 3.16
514 515 0.896923 TTGTTGGAATGGATGGCTGC 59.103 50.000 0.00 0.00 0.00 5.25
527 528 2.276058 GCTGCGATGCGACGTTTC 60.276 61.111 0.00 0.00 35.59 2.78
626 627 0.107066 TATGACACGCGGGACCTAGA 60.107 55.000 19.19 0.00 0.00 2.43
1151 1154 5.184479 TCTCGTTTCTCCCGATTTCTTTCTA 59.816 40.000 0.00 0.00 33.27 2.10
1292 1300 4.951603 AGGTTGAAATTGGAGGGATCAAT 58.048 39.130 0.00 0.00 36.50 2.57
1362 1370 0.962356 CCAATTTGGCGGACAGAGCT 60.962 55.000 1.71 0.00 34.52 4.09
1413 1421 6.985645 TGAAGTGTGAATTGAAGAAAATTGGG 59.014 34.615 0.00 0.00 29.89 4.12
1719 1729 7.553881 TCCTCTGTTTTTGTTCTTCAGTTAG 57.446 36.000 0.00 0.00 0.00 2.34
1937 1957 6.601741 TGCCTTTTTCTTGCACTAAATTTG 57.398 33.333 0.00 0.00 0.00 2.32
2331 2442 9.865321 GAAGCATACCCAACGATTATATAGTAA 57.135 33.333 0.00 0.00 0.00 2.24
2495 2632 3.496337 GGGTTCTTCGGGTTCTTCTTCTT 60.496 47.826 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.163693 TGTCTAAAGCGTATGATCGAGTTGA 60.164 40.000 0.00 0.00 0.00 3.18
1 2 5.034797 TGTCTAAAGCGTATGATCGAGTTG 58.965 41.667 0.00 0.00 0.00 3.16
2 3 5.244785 TGTCTAAAGCGTATGATCGAGTT 57.755 39.130 0.00 0.00 0.00 3.01
3 4 4.895224 TGTCTAAAGCGTATGATCGAGT 57.105 40.909 0.00 0.00 0.00 4.18
4 5 5.274718 ACTTGTCTAAAGCGTATGATCGAG 58.725 41.667 0.00 0.00 0.00 4.04
5 6 5.244785 ACTTGTCTAAAGCGTATGATCGA 57.755 39.130 0.00 0.00 0.00 3.59
6 7 4.144902 CGACTTGTCTAAAGCGTATGATCG 59.855 45.833 0.00 0.00 0.00 3.69
7 8 5.271625 TCGACTTGTCTAAAGCGTATGATC 58.728 41.667 0.00 0.00 0.00 2.92
8 9 5.244785 TCGACTTGTCTAAAGCGTATGAT 57.755 39.130 0.00 0.00 0.00 2.45
9 10 4.659088 CTCGACTTGTCTAAAGCGTATGA 58.341 43.478 0.00 0.00 0.00 2.15
10 11 3.240861 GCTCGACTTGTCTAAAGCGTATG 59.759 47.826 0.00 0.00 0.00 2.39
11 12 3.128938 AGCTCGACTTGTCTAAAGCGTAT 59.871 43.478 11.24 0.00 34.99 3.06
12 13 2.486982 AGCTCGACTTGTCTAAAGCGTA 59.513 45.455 11.24 0.00 34.99 4.42
13 14 1.269998 AGCTCGACTTGTCTAAAGCGT 59.730 47.619 11.24 0.00 34.99 5.07
14 15 1.983972 AGCTCGACTTGTCTAAAGCG 58.016 50.000 11.24 0.00 34.99 4.68
24 25 0.679505 TGTGCCTACAAGCTCGACTT 59.320 50.000 0.00 0.00 40.05 3.01
25 26 0.679505 TTGTGCCTACAAGCTCGACT 59.320 50.000 0.00 0.00 41.66 4.18
26 27 1.461127 CTTTGTGCCTACAAGCTCGAC 59.539 52.381 0.00 0.00 46.63 4.20
27 28 1.343142 TCTTTGTGCCTACAAGCTCGA 59.657 47.619 0.00 0.00 46.63 4.04
28 29 1.728971 CTCTTTGTGCCTACAAGCTCG 59.271 52.381 0.00 0.00 46.63 5.03
29 30 1.466558 GCTCTTTGTGCCTACAAGCTC 59.533 52.381 0.00 0.00 46.63 4.09
30 31 1.202806 TGCTCTTTGTGCCTACAAGCT 60.203 47.619 0.00 0.00 46.63 3.74
31 32 1.198637 CTGCTCTTTGTGCCTACAAGC 59.801 52.381 0.00 0.00 46.63 4.01
32 33 1.808945 CCTGCTCTTTGTGCCTACAAG 59.191 52.381 0.00 0.00 46.63 3.16
33 34 1.419762 TCCTGCTCTTTGTGCCTACAA 59.580 47.619 0.00 0.00 44.66 2.41
34 35 1.055849 TCCTGCTCTTTGTGCCTACA 58.944 50.000 0.00 0.00 34.31 2.74
35 36 2.284190 GATCCTGCTCTTTGTGCCTAC 58.716 52.381 0.00 0.00 0.00 3.18
36 37 1.908619 TGATCCTGCTCTTTGTGCCTA 59.091 47.619 0.00 0.00 0.00 3.93
37 38 0.694771 TGATCCTGCTCTTTGTGCCT 59.305 50.000 0.00 0.00 0.00 4.75
38 39 1.760192 ATGATCCTGCTCTTTGTGCC 58.240 50.000 0.00 0.00 0.00 5.01
39 40 3.863142 AAATGATCCTGCTCTTTGTGC 57.137 42.857 0.00 0.00 0.00 4.57
40 41 4.741342 GGAAAATGATCCTGCTCTTTGTG 58.259 43.478 0.00 0.00 36.50 3.33
51 52 5.248640 TCAGTCACTGAAGGAAAATGATCC 58.751 41.667 4.55 0.00 37.57 3.36
52 53 6.808008 TTCAGTCACTGAAGGAAAATGATC 57.192 37.500 16.67 0.00 44.27 2.92
64 65 5.104982 TGCATACACCATATTCAGTCACTGA 60.105 40.000 2.36 2.36 38.87 3.41
65 66 5.118286 TGCATACACCATATTCAGTCACTG 58.882 41.667 0.00 0.00 0.00 3.66
66 67 5.357742 TGCATACACCATATTCAGTCACT 57.642 39.130 0.00 0.00 0.00 3.41
67 68 6.564686 CGAATGCATACACCATATTCAGTCAC 60.565 42.308 0.00 0.00 0.00 3.67
68 69 5.466393 CGAATGCATACACCATATTCAGTCA 59.534 40.000 0.00 0.00 0.00 3.41
69 70 5.696270 TCGAATGCATACACCATATTCAGTC 59.304 40.000 0.00 0.00 0.00 3.51
70 71 5.610398 TCGAATGCATACACCATATTCAGT 58.390 37.500 0.00 0.00 0.00 3.41
71 72 6.544038 TTCGAATGCATACACCATATTCAG 57.456 37.500 0.00 0.00 0.00 3.02
72 73 6.513230 GCTTTCGAATGCATACACCATATTCA 60.513 38.462 25.99 0.00 0.00 2.57
73 74 5.853282 GCTTTCGAATGCATACACCATATTC 59.147 40.000 25.99 0.00 0.00 1.75
74 75 5.299028 TGCTTTCGAATGCATACACCATATT 59.701 36.000 28.74 0.00 34.62 1.28
75 76 4.821260 TGCTTTCGAATGCATACACCATAT 59.179 37.500 28.74 0.00 34.62 1.78
76 77 4.195416 TGCTTTCGAATGCATACACCATA 58.805 39.130 28.74 8.37 34.62 2.74
77 78 3.016031 TGCTTTCGAATGCATACACCAT 58.984 40.909 28.74 0.00 34.62 3.55
78 79 2.431454 TGCTTTCGAATGCATACACCA 58.569 42.857 28.74 9.66 34.62 4.17
79 80 3.485947 TTGCTTTCGAATGCATACACC 57.514 42.857 31.55 7.41 38.61 4.16
80 81 6.085458 CGATAATTGCTTTCGAATGCATACAC 59.915 38.462 31.55 21.58 38.61 2.90
81 82 6.018343 TCGATAATTGCTTTCGAATGCATACA 60.018 34.615 31.55 20.97 38.80 2.29
82 83 6.362686 TCGATAATTGCTTTCGAATGCATAC 58.637 36.000 31.55 20.81 38.80 2.39
83 84 6.538189 TCGATAATTGCTTTCGAATGCATA 57.462 33.333 31.55 23.77 38.80 3.14
84 85 5.422666 TCGATAATTGCTTTCGAATGCAT 57.577 34.783 31.55 22.65 38.80 3.96
85 86 4.873768 TCGATAATTGCTTTCGAATGCA 57.126 36.364 28.74 28.74 38.80 3.96
90 91 8.365399 ACAGATAATTCGATAATTGCTTTCGA 57.635 30.769 0.00 0.00 39.88 3.71
100 101 9.871238 GGAGGCTTATTACAGATAATTCGATAA 57.129 33.333 0.00 0.00 32.98 1.75
101 102 8.475639 GGGAGGCTTATTACAGATAATTCGATA 58.524 37.037 0.00 0.00 32.98 2.92
102 103 7.181125 AGGGAGGCTTATTACAGATAATTCGAT 59.819 37.037 0.00 0.00 32.98 3.59
103 104 6.497259 AGGGAGGCTTATTACAGATAATTCGA 59.503 38.462 0.00 0.00 32.98 3.71
104 105 6.702329 AGGGAGGCTTATTACAGATAATTCG 58.298 40.000 0.00 0.00 32.98 3.34
105 106 9.036980 TCTAGGGAGGCTTATTACAGATAATTC 57.963 37.037 0.00 0.00 32.98 2.17
106 107 8.974292 TCTAGGGAGGCTTATTACAGATAATT 57.026 34.615 0.00 0.00 32.98 1.40
107 108 8.817876 GTTCTAGGGAGGCTTATTACAGATAAT 58.182 37.037 0.00 0.00 35.16 1.28
108 109 7.787904 TGTTCTAGGGAGGCTTATTACAGATAA 59.212 37.037 0.00 0.00 0.00 1.75
109 110 7.302948 TGTTCTAGGGAGGCTTATTACAGATA 58.697 38.462 0.00 0.00 0.00 1.98
110 111 6.143915 TGTTCTAGGGAGGCTTATTACAGAT 58.856 40.000 0.00 0.00 0.00 2.90
111 112 5.525484 TGTTCTAGGGAGGCTTATTACAGA 58.475 41.667 0.00 0.00 0.00 3.41
112 113 5.871396 TGTTCTAGGGAGGCTTATTACAG 57.129 43.478 0.00 0.00 0.00 2.74
113 114 6.630203 TTTGTTCTAGGGAGGCTTATTACA 57.370 37.500 0.00 0.00 0.00 2.41
114 115 6.038382 GCTTTTGTTCTAGGGAGGCTTATTAC 59.962 42.308 0.00 0.00 0.00 1.89
115 116 6.120220 GCTTTTGTTCTAGGGAGGCTTATTA 58.880 40.000 0.00 0.00 0.00 0.98
116 117 4.950475 GCTTTTGTTCTAGGGAGGCTTATT 59.050 41.667 0.00 0.00 0.00 1.40
117 118 4.018415 TGCTTTTGTTCTAGGGAGGCTTAT 60.018 41.667 0.00 0.00 0.00 1.73
118 119 3.329520 TGCTTTTGTTCTAGGGAGGCTTA 59.670 43.478 0.00 0.00 0.00 3.09
119 120 2.108250 TGCTTTTGTTCTAGGGAGGCTT 59.892 45.455 0.00 0.00 0.00 4.35
120 121 1.705186 TGCTTTTGTTCTAGGGAGGCT 59.295 47.619 0.00 0.00 0.00 4.58
121 122 1.813178 GTGCTTTTGTTCTAGGGAGGC 59.187 52.381 0.00 0.00 0.00 4.70
122 123 3.008485 AGAGTGCTTTTGTTCTAGGGAGG 59.992 47.826 0.00 0.00 0.00 4.30
123 124 3.999663 CAGAGTGCTTTTGTTCTAGGGAG 59.000 47.826 0.00 0.00 0.00 4.30
124 125 3.646162 TCAGAGTGCTTTTGTTCTAGGGA 59.354 43.478 0.00 0.00 0.00 4.20
125 126 4.008074 TCAGAGTGCTTTTGTTCTAGGG 57.992 45.455 0.00 0.00 0.00 3.53
126 127 6.566197 AAATCAGAGTGCTTTTGTTCTAGG 57.434 37.500 0.00 0.00 0.00 3.02
127 128 7.642669 TGAAAATCAGAGTGCTTTTGTTCTAG 58.357 34.615 0.00 0.00 27.36 2.43
128 129 7.566760 TGAAAATCAGAGTGCTTTTGTTCTA 57.433 32.000 0.00 0.00 27.36 2.10
129 130 6.455360 TGAAAATCAGAGTGCTTTTGTTCT 57.545 33.333 0.00 0.00 27.36 3.01
144 145 4.019950 TGTGGAGCTGATCTCTGAAAATCA 60.020 41.667 0.00 3.30 41.60 2.57
145 146 4.511527 TGTGGAGCTGATCTCTGAAAATC 58.488 43.478 0.00 0.00 41.60 2.17
146 147 4.564782 TGTGGAGCTGATCTCTGAAAAT 57.435 40.909 0.00 0.00 41.60 1.82
147 148 4.321718 CTTGTGGAGCTGATCTCTGAAAA 58.678 43.478 0.00 0.00 41.60 2.29
148 149 3.935315 CTTGTGGAGCTGATCTCTGAAA 58.065 45.455 0.00 0.00 41.60 2.69
149 150 3.606595 CTTGTGGAGCTGATCTCTGAA 57.393 47.619 0.00 0.00 41.60 3.02
161 162 1.298014 GAGACCCCTGCTTGTGGAG 59.702 63.158 0.00 0.00 0.00 3.86
162 163 1.059584 TTGAGACCCCTGCTTGTGGA 61.060 55.000 0.00 0.00 0.00 4.02
163 164 0.890996 GTTGAGACCCCTGCTTGTGG 60.891 60.000 0.00 0.00 0.00 4.17
164 165 0.890996 GGTTGAGACCCCTGCTTGTG 60.891 60.000 0.00 0.00 40.25 3.33
165 166 1.456287 GGTTGAGACCCCTGCTTGT 59.544 57.895 0.00 0.00 40.25 3.16
166 167 4.404691 GGTTGAGACCCCTGCTTG 57.595 61.111 0.00 0.00 40.25 4.01
174 175 4.335594 GTGCATGGTTAATAGGTTGAGACC 59.664 45.833 0.00 0.00 46.92 3.85
175 176 5.186198 AGTGCATGGTTAATAGGTTGAGAC 58.814 41.667 0.00 0.00 0.00 3.36
176 177 5.435686 AGTGCATGGTTAATAGGTTGAGA 57.564 39.130 0.00 0.00 0.00 3.27
177 178 6.150976 TCAAAGTGCATGGTTAATAGGTTGAG 59.849 38.462 0.00 0.00 0.00 3.02
178 179 6.007076 TCAAAGTGCATGGTTAATAGGTTGA 58.993 36.000 0.00 0.00 0.00 3.18
179 180 6.266168 TCAAAGTGCATGGTTAATAGGTTG 57.734 37.500 0.00 0.00 0.00 3.77
180 181 6.909550 TTCAAAGTGCATGGTTAATAGGTT 57.090 33.333 0.00 0.00 0.00 3.50
181 182 6.266558 TGTTTCAAAGTGCATGGTTAATAGGT 59.733 34.615 0.00 0.00 0.00 3.08
182 183 6.686630 TGTTTCAAAGTGCATGGTTAATAGG 58.313 36.000 0.00 0.00 0.00 2.57
183 184 8.761575 ATTGTTTCAAAGTGCATGGTTAATAG 57.238 30.769 0.00 0.00 0.00 1.73
184 185 9.553064 AAATTGTTTCAAAGTGCATGGTTAATA 57.447 25.926 0.00 0.00 0.00 0.98
185 186 8.449251 AAATTGTTTCAAAGTGCATGGTTAAT 57.551 26.923 0.00 0.00 0.00 1.40
186 187 7.856145 AAATTGTTTCAAAGTGCATGGTTAA 57.144 28.000 0.00 0.00 0.00 2.01
187 188 7.856145 AAAATTGTTTCAAAGTGCATGGTTA 57.144 28.000 0.00 0.00 0.00 2.85
188 189 6.756299 AAAATTGTTTCAAAGTGCATGGTT 57.244 29.167 0.00 0.00 0.00 3.67
189 190 9.553064 TTATAAAATTGTTTCAAAGTGCATGGT 57.447 25.926 0.00 0.00 0.00 3.55
193 194 9.383519 TGGTTTATAAAATTGTTTCAAAGTGCA 57.616 25.926 0.00 0.00 0.00 4.57
194 195 9.644993 GTGGTTTATAAAATTGTTTCAAAGTGC 57.355 29.630 0.00 0.00 0.00 4.40
213 214 8.798402 CCCAATTAGTCTTTGTAATGTGGTTTA 58.202 33.333 0.00 0.00 0.00 2.01
214 215 7.666623 CCCAATTAGTCTTTGTAATGTGGTTT 58.333 34.615 0.00 0.00 0.00 3.27
215 216 6.295067 GCCCAATTAGTCTTTGTAATGTGGTT 60.295 38.462 0.00 0.00 0.00 3.67
216 217 5.185056 GCCCAATTAGTCTTTGTAATGTGGT 59.815 40.000 0.00 0.00 0.00 4.16
217 218 5.650543 GCCCAATTAGTCTTTGTAATGTGG 58.349 41.667 0.00 0.00 0.00 4.17
218 219 5.123186 TCGCCCAATTAGTCTTTGTAATGTG 59.877 40.000 0.00 0.00 0.00 3.21
219 220 5.250200 TCGCCCAATTAGTCTTTGTAATGT 58.750 37.500 0.00 0.00 0.00 2.71
220 221 5.811399 TCGCCCAATTAGTCTTTGTAATG 57.189 39.130 0.00 0.00 0.00 1.90
221 222 6.433093 ACTTTCGCCCAATTAGTCTTTGTAAT 59.567 34.615 0.00 0.00 0.00 1.89
222 223 5.766174 ACTTTCGCCCAATTAGTCTTTGTAA 59.234 36.000 0.00 0.00 0.00 2.41
223 224 5.310451 ACTTTCGCCCAATTAGTCTTTGTA 58.690 37.500 0.00 0.00 0.00 2.41
224 225 4.142038 ACTTTCGCCCAATTAGTCTTTGT 58.858 39.130 0.00 0.00 0.00 2.83
225 226 4.455877 AGACTTTCGCCCAATTAGTCTTTG 59.544 41.667 0.00 0.00 41.97 2.77
226 227 4.652822 AGACTTTCGCCCAATTAGTCTTT 58.347 39.130 0.00 0.00 41.97 2.52
227 228 4.287766 AGACTTTCGCCCAATTAGTCTT 57.712 40.909 0.00 0.00 41.97 3.01
228 229 3.983044 AGACTTTCGCCCAATTAGTCT 57.017 42.857 0.00 0.00 40.39 3.24
229 230 5.372547 AAAAGACTTTCGCCCAATTAGTC 57.627 39.130 0.00 0.00 36.38 2.59
230 231 5.784578 AAAAAGACTTTCGCCCAATTAGT 57.215 34.783 0.00 0.00 0.00 2.24
231 232 8.757164 AATTAAAAAGACTTTCGCCCAATTAG 57.243 30.769 0.00 0.00 0.00 1.73
232 233 8.581578 AGAATTAAAAAGACTTTCGCCCAATTA 58.418 29.630 0.00 0.00 0.00 1.40
233 234 7.441836 AGAATTAAAAAGACTTTCGCCCAATT 58.558 30.769 0.00 3.58 0.00 2.32
234 235 6.993079 AGAATTAAAAAGACTTTCGCCCAAT 58.007 32.000 0.00 0.00 0.00 3.16
235 236 6.399639 AGAATTAAAAAGACTTTCGCCCAA 57.600 33.333 0.00 0.00 0.00 4.12
236 237 6.183360 ACAAGAATTAAAAAGACTTTCGCCCA 60.183 34.615 0.00 0.00 0.00 5.36
237 238 6.143919 CACAAGAATTAAAAAGACTTTCGCCC 59.856 38.462 0.00 0.00 0.00 6.13
238 239 6.143919 CCACAAGAATTAAAAAGACTTTCGCC 59.856 38.462 0.00 0.00 0.00 5.54
239 240 6.915843 TCCACAAGAATTAAAAAGACTTTCGC 59.084 34.615 0.00 0.00 0.00 4.70
240 241 8.905702 CATCCACAAGAATTAAAAAGACTTTCG 58.094 33.333 0.00 0.00 0.00 3.46
241 242 8.703336 GCATCCACAAGAATTAAAAAGACTTTC 58.297 33.333 0.00 0.00 0.00 2.62
242 243 8.424133 AGCATCCACAAGAATTAAAAAGACTTT 58.576 29.630 0.00 0.00 0.00 2.66
243 244 7.869429 CAGCATCCACAAGAATTAAAAAGACTT 59.131 33.333 0.00 0.00 0.00 3.01
244 245 7.014615 ACAGCATCCACAAGAATTAAAAAGACT 59.985 33.333 0.00 0.00 0.00 3.24
245 246 7.147976 ACAGCATCCACAAGAATTAAAAAGAC 58.852 34.615 0.00 0.00 0.00 3.01
246 247 7.288810 ACAGCATCCACAAGAATTAAAAAGA 57.711 32.000 0.00 0.00 0.00 2.52
247 248 9.643693 AATACAGCATCCACAAGAATTAAAAAG 57.356 29.630 0.00 0.00 0.00 2.27
248 249 9.995003 AAATACAGCATCCACAAGAATTAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
249 250 9.995003 AAAATACAGCATCCACAAGAATTAAAA 57.005 25.926 0.00 0.00 0.00 1.52
250 251 9.638239 GAAAATACAGCATCCACAAGAATTAAA 57.362 29.630 0.00 0.00 0.00 1.52
251 252 7.967854 CGAAAATACAGCATCCACAAGAATTAA 59.032 33.333 0.00 0.00 0.00 1.40
252 253 7.415095 CCGAAAATACAGCATCCACAAGAATTA 60.415 37.037 0.00 0.00 0.00 1.40
253 254 6.324819 CGAAAATACAGCATCCACAAGAATT 58.675 36.000 0.00 0.00 0.00 2.17
254 255 5.163622 CCGAAAATACAGCATCCACAAGAAT 60.164 40.000 0.00 0.00 0.00 2.40
255 256 4.155826 CCGAAAATACAGCATCCACAAGAA 59.844 41.667 0.00 0.00 0.00 2.52
256 257 3.689161 CCGAAAATACAGCATCCACAAGA 59.311 43.478 0.00 0.00 0.00 3.02
257 258 3.689161 TCCGAAAATACAGCATCCACAAG 59.311 43.478 0.00 0.00 0.00 3.16
258 259 3.680490 TCCGAAAATACAGCATCCACAA 58.320 40.909 0.00 0.00 0.00 3.33
259 260 3.342377 TCCGAAAATACAGCATCCACA 57.658 42.857 0.00 0.00 0.00 4.17
260 261 4.335315 TGATTCCGAAAATACAGCATCCAC 59.665 41.667 0.00 0.00 0.00 4.02
261 262 4.522114 TGATTCCGAAAATACAGCATCCA 58.478 39.130 0.00 0.00 0.00 3.41
262 263 5.163663 TGTTGATTCCGAAAATACAGCATCC 60.164 40.000 0.00 0.00 0.00 3.51
263 264 5.739161 GTGTTGATTCCGAAAATACAGCATC 59.261 40.000 0.00 0.00 0.00 3.91
264 265 5.393027 GGTGTTGATTCCGAAAATACAGCAT 60.393 40.000 13.02 0.00 0.00 3.79
265 266 4.083003 GGTGTTGATTCCGAAAATACAGCA 60.083 41.667 13.02 0.00 0.00 4.41
266 267 4.083003 TGGTGTTGATTCCGAAAATACAGC 60.083 41.667 11.84 11.84 0.00 4.40
267 268 5.621197 TGGTGTTGATTCCGAAAATACAG 57.379 39.130 0.00 0.00 0.00 2.74
268 269 5.163804 CGATGGTGTTGATTCCGAAAATACA 60.164 40.000 0.00 0.00 0.00 2.29
269 270 5.163794 ACGATGGTGTTGATTCCGAAAATAC 60.164 40.000 0.00 0.00 0.00 1.89
270 271 4.938832 ACGATGGTGTTGATTCCGAAAATA 59.061 37.500 0.00 0.00 0.00 1.40
271 272 3.756434 ACGATGGTGTTGATTCCGAAAAT 59.244 39.130 0.00 0.00 0.00 1.82
272 273 3.142951 ACGATGGTGTTGATTCCGAAAA 58.857 40.909 0.00 0.00 0.00 2.29
273 274 2.739913 GACGATGGTGTTGATTCCGAAA 59.260 45.455 0.00 0.00 0.00 3.46
274 275 2.343101 GACGATGGTGTTGATTCCGAA 58.657 47.619 0.00 0.00 0.00 4.30
275 276 1.734377 CGACGATGGTGTTGATTCCGA 60.734 52.381 0.00 0.00 0.00 4.55
276 277 0.645355 CGACGATGGTGTTGATTCCG 59.355 55.000 0.00 0.00 0.00 4.30
277 278 1.722011 ACGACGATGGTGTTGATTCC 58.278 50.000 0.00 0.00 0.00 3.01
278 279 3.720920 CGAAACGACGATGGTGTTGATTC 60.721 47.826 0.00 0.00 33.82 2.52
279 280 2.156891 CGAAACGACGATGGTGTTGATT 59.843 45.455 0.00 0.00 35.09 2.57
280 281 1.724623 CGAAACGACGATGGTGTTGAT 59.275 47.619 0.00 0.00 35.09 2.57
281 282 1.133407 CGAAACGACGATGGTGTTGA 58.867 50.000 0.00 0.00 35.09 3.18
282 283 0.856641 ACGAAACGACGATGGTGTTG 59.143 50.000 0.00 0.00 37.03 3.33
283 284 1.574134 AACGAAACGACGATGGTGTT 58.426 45.000 0.00 0.00 37.03 3.32
284 285 2.420628 TAACGAAACGACGATGGTGT 57.579 45.000 0.00 0.00 37.03 4.16
285 286 2.159934 GGTTAACGAAACGACGATGGTG 60.160 50.000 0.00 0.00 39.13 4.17
286 287 2.061028 GGTTAACGAAACGACGATGGT 58.939 47.619 0.00 0.00 39.13 3.55
287 288 1.391144 GGGTTAACGAAACGACGATGG 59.609 52.381 0.00 0.00 39.13 3.51
288 289 1.391144 GGGGTTAACGAAACGACGATG 59.609 52.381 0.00 0.00 39.13 3.84
289 290 1.672737 GGGGGTTAACGAAACGACGAT 60.673 52.381 0.00 0.00 39.13 3.73
290 291 0.319469 GGGGGTTAACGAAACGACGA 60.319 55.000 0.00 0.00 39.13 4.20
291 292 0.319813 AGGGGGTTAACGAAACGACG 60.320 55.000 0.00 0.00 39.13 5.12
292 293 1.432514 GAGGGGGTTAACGAAACGAC 58.567 55.000 0.00 0.00 39.13 4.34
293 294 0.038343 CGAGGGGGTTAACGAAACGA 60.038 55.000 0.00 0.00 39.13 3.85
294 295 1.015607 CCGAGGGGGTTAACGAAACG 61.016 60.000 0.00 2.26 39.13 3.60
295 296 2.845019 CCGAGGGGGTTAACGAAAC 58.155 57.895 0.00 0.00 37.36 2.78
314 315 4.450122 CAGTGACACGGCGCATGC 62.450 66.667 10.83 7.91 41.71 4.06
315 316 2.102438 ATCAGTGACACGGCGCATG 61.102 57.895 10.83 9.86 0.00 4.06
316 317 2.102438 CATCAGTGACACGGCGCAT 61.102 57.895 10.83 0.00 0.00 4.73
317 318 2.738139 CATCAGTGACACGGCGCA 60.738 61.111 10.83 0.00 0.00 6.09
318 319 4.152625 GCATCAGTGACACGGCGC 62.153 66.667 6.90 0.00 0.00 6.53
319 320 3.842126 CGCATCAGTGACACGGCG 61.842 66.667 17.57 17.57 38.45 6.46
320 321 2.738521 ACGCATCAGTGACACGGC 60.739 61.111 17.91 9.05 0.00 5.68
321 322 2.382746 CCACGCATCAGTGACACGG 61.383 63.158 17.91 0.00 44.43 4.94
322 323 3.015293 GCCACGCATCAGTGACACG 62.015 63.158 13.50 13.50 44.43 4.49
323 324 1.904852 CTGCCACGCATCAGTGACAC 61.905 60.000 0.00 0.00 44.43 3.67
324 325 1.668793 CTGCCACGCATCAGTGACA 60.669 57.895 0.00 0.00 44.43 3.58
325 326 1.230635 AACTGCCACGCATCAGTGAC 61.231 55.000 0.00 0.00 44.43 3.67
326 327 0.320050 TAACTGCCACGCATCAGTGA 59.680 50.000 0.00 0.00 44.43 3.41
327 328 0.443869 GTAACTGCCACGCATCAGTG 59.556 55.000 5.06 0.00 42.19 3.66
328 329 0.673644 GGTAACTGCCACGCATCAGT 60.674 55.000 0.00 0.00 44.64 3.41
329 330 1.369091 GGGTAACTGCCACGCATCAG 61.369 60.000 0.00 0.00 38.13 2.90
330 331 1.376683 GGGTAACTGCCACGCATCA 60.377 57.895 0.00 0.00 38.13 3.07
331 332 2.461110 CGGGTAACTGCCACGCATC 61.461 63.158 0.00 0.00 38.13 3.91
332 333 2.435938 CGGGTAACTGCCACGCAT 60.436 61.111 0.00 0.00 38.13 4.73
341 342 9.431887 CATAATACATGTTATTAGCGGGTAACT 57.568 33.333 2.30 0.00 33.17 2.24
342 343 9.426837 TCATAATACATGTTATTAGCGGGTAAC 57.573 33.333 2.30 0.00 0.00 2.50
345 346 9.515226 AAATCATAATACATGTTATTAGCGGGT 57.485 29.630 2.30 0.00 0.00 5.28
375 376 9.295825 ACAATCATAGTACATGTTCTTTGGAAA 57.704 29.630 18.14 4.81 32.81 3.13
376 377 8.862325 ACAATCATAGTACATGTTCTTTGGAA 57.138 30.769 18.14 5.37 0.00 3.53
377 378 8.862325 AACAATCATAGTACATGTTCTTTGGA 57.138 30.769 18.14 11.10 28.61 3.53
389 390 9.173939 GCATGCTTTGATTAACAATCATAGTAC 57.826 33.333 11.37 0.00 46.50 2.73
390 391 8.901793 TGCATGCTTTGATTAACAATCATAGTA 58.098 29.630 20.33 13.35 46.50 1.82
391 392 7.774134 TGCATGCTTTGATTAACAATCATAGT 58.226 30.769 20.33 1.30 46.50 2.12
392 393 8.699749 CATGCATGCTTTGATTAACAATCATAG 58.300 33.333 20.33 12.32 46.50 2.23
393 394 8.582433 CATGCATGCTTTGATTAACAATCATA 57.418 30.769 20.33 0.00 46.50 2.15
394 395 7.477144 CATGCATGCTTTGATTAACAATCAT 57.523 32.000 20.33 0.00 46.50 2.45
395 396 6.895607 CATGCATGCTTTGATTAACAATCA 57.104 33.333 20.33 0.00 45.68 2.57
415 416 1.945394 GAGTCACCCTAGCAATGCATG 59.055 52.381 8.35 0.00 0.00 4.06
416 417 1.561076 TGAGTCACCCTAGCAATGCAT 59.439 47.619 8.35 0.00 0.00 3.96
417 418 0.983467 TGAGTCACCCTAGCAATGCA 59.017 50.000 8.35 0.00 0.00 3.96
418 419 1.945394 CATGAGTCACCCTAGCAATGC 59.055 52.381 0.00 0.00 0.00 3.56
419 420 3.548745 TCATGAGTCACCCTAGCAATG 57.451 47.619 0.00 0.00 0.00 2.82
420 421 3.181447 CCATCATGAGTCACCCTAGCAAT 60.181 47.826 0.09 0.00 0.00 3.56
421 422 2.171237 CCATCATGAGTCACCCTAGCAA 59.829 50.000 0.09 0.00 0.00 3.91
422 423 1.764723 CCATCATGAGTCACCCTAGCA 59.235 52.381 0.09 0.00 0.00 3.49
423 424 1.071385 CCCATCATGAGTCACCCTAGC 59.929 57.143 0.09 0.00 0.00 3.42
424 425 1.696336 CCCCATCATGAGTCACCCTAG 59.304 57.143 0.09 0.00 0.00 3.02
425 426 1.009552 ACCCCATCATGAGTCACCCTA 59.990 52.381 0.09 0.00 0.00 3.53
426 427 0.253347 ACCCCATCATGAGTCACCCT 60.253 55.000 0.09 0.00 0.00 4.34
427 428 0.181350 GACCCCATCATGAGTCACCC 59.819 60.000 0.09 0.00 0.00 4.61
428 429 0.911769 TGACCCCATCATGAGTCACC 59.088 55.000 10.55 0.00 34.44 4.02
429 430 2.787473 TTGACCCCATCATGAGTCAC 57.213 50.000 13.41 0.00 38.88 3.67
430 431 3.181451 GCTATTGACCCCATCATGAGTCA 60.181 47.826 10.55 10.55 37.11 3.41
431 432 3.072184 AGCTATTGACCCCATCATGAGTC 59.928 47.826 0.09 3.68 37.11 3.36
432 433 3.051581 AGCTATTGACCCCATCATGAGT 58.948 45.455 0.09 0.00 37.11 3.41
433 434 3.558746 GGAGCTATTGACCCCATCATGAG 60.559 52.174 0.09 0.00 37.11 2.90
434 435 2.373169 GGAGCTATTGACCCCATCATGA 59.627 50.000 0.00 0.00 37.11 3.07
435 436 2.374504 AGGAGCTATTGACCCCATCATG 59.625 50.000 0.00 0.00 37.11 3.07
436 437 2.374504 CAGGAGCTATTGACCCCATCAT 59.625 50.000 0.00 0.00 37.11 2.45
437 438 1.770658 CAGGAGCTATTGACCCCATCA 59.229 52.381 0.00 0.00 34.65 3.07
438 439 1.771255 ACAGGAGCTATTGACCCCATC 59.229 52.381 4.09 0.00 0.00 3.51
463 464 5.792741 TCCTTCCAATTCGCATGAAAAATT 58.207 33.333 0.00 0.00 37.71 1.82
464 465 5.047092 ACTCCTTCCAATTCGCATGAAAAAT 60.047 36.000 0.00 0.00 37.71 1.82
506 507 3.993234 CGTCGCATCGCAGCCATC 61.993 66.667 0.00 0.00 0.00 3.51
514 515 0.246912 GCTTCTGAAACGTCGCATCG 60.247 55.000 0.00 0.00 0.00 3.84
527 528 4.771590 TTGGAGCTATTGTTTGCTTCTG 57.228 40.909 0.00 0.00 39.91 3.02
626 627 1.019278 CACCCGCATGCGAGTAACTT 61.019 55.000 39.90 8.95 42.83 2.66
681 682 4.760047 GTCGGGGCACGCTGATGT 62.760 66.667 3.08 0.00 43.86 3.06
1131 1132 7.968956 GGAAAATAGAAAGAAATCGGGAGAAAC 59.031 37.037 0.00 0.00 45.37 2.78
1151 1154 2.092592 ACCGCCCTAATTCGAGGAAAAT 60.093 45.455 0.00 0.00 39.15 1.82
1292 1300 0.984230 ATTGAGCTCTTGGGTTCCGA 59.016 50.000 16.19 0.00 0.00 4.55
1362 1370 1.944032 CACTGTGCATCATCGGATCA 58.056 50.000 0.00 0.00 0.00 2.92
1413 1421 4.568359 TCGATCAGATGCTTTAGTTGCTTC 59.432 41.667 0.00 0.00 35.62 3.86
1719 1729 3.146066 TGAATTTGGGTGTGTACTCTGC 58.854 45.455 0.00 0.00 0.00 4.26
2331 2442 2.698797 CCCCGTGGAACTATGAGTATGT 59.301 50.000 0.00 0.00 31.75 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.