Multiple sequence alignment - TraesCS2A01G159600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G159600 chr2A 100.000 4237 0 0 1 4237 107315360 107319596 0.000000e+00 7825
1 TraesCS2A01G159600 chr2D 91.209 1786 109 26 1 1775 110907631 110909379 0.000000e+00 2385
2 TraesCS2A01G159600 chr2D 91.782 1448 80 32 2327 3757 110909870 110911295 0.000000e+00 1978
3 TraesCS2A01G159600 chr2D 86.503 489 21 9 3733 4191 110912215 110912688 2.940000e-136 496
4 TraesCS2A01G159600 chr2B 91.425 1411 84 24 2361 3743 160281968 160283369 0.000000e+00 1901
5 TraesCS2A01G159600 chr2B 89.403 1038 78 16 839 1861 160280617 160281637 0.000000e+00 1279
6 TraesCS2A01G159600 chr2B 86.667 810 51 20 51 846 160220776 160221542 0.000000e+00 845
7 TraesCS2A01G159600 chr2B 90.000 220 11 3 4025 4237 160378903 160379118 1.500000e-69 274
8 TraesCS2A01G159600 chr3D 90.390 385 34 3 1944 2326 64750871 64750488 1.760000e-138 503
9 TraesCS2A01G159600 chr3D 87.792 385 43 4 1944 2325 557689028 557689411 8.360000e-122 448
10 TraesCS2A01G159600 chr3D 87.760 384 40 6 1948 2328 264059627 264059248 3.890000e-120 442
11 TraesCS2A01G159600 chr3D 87.728 383 40 6 1947 2326 452580650 452580272 1.400000e-119 440
12 TraesCS2A01G159600 chr5D 89.062 384 38 4 1948 2328 543840225 543840607 1.380000e-129 473
13 TraesCS2A01G159600 chr5D 88.220 382 39 5 1944 2321 87115151 87114772 6.460000e-123 451
14 TraesCS2A01G159600 chr5D 78.398 412 67 17 1049 1452 545145477 545145874 9.100000e-62 248
15 TraesCS2A01G159600 chr5D 86.631 187 25 0 1263 1449 545124512 545124326 1.540000e-49 207
16 TraesCS2A01G159600 chr1D 88.512 383 39 4 1948 2327 87126011 87126391 3.860000e-125 459
17 TraesCS2A01G159600 chr1D 94.512 164 9 0 2779 2942 182615805 182615642 1.960000e-63 254
18 TraesCS2A01G159600 chr3A 88.052 385 40 5 1944 2326 75461648 75461268 6.460000e-123 451
19 TraesCS2A01G159600 chr5B 87.760 384 42 4 1948 2328 504330663 504330282 1.080000e-120 444
20 TraesCS2A01G159600 chr5B 94.304 158 9 0 2779 2936 474082925 474082768 4.230000e-60 243
21 TraesCS2A01G159600 chr5B 87.701 187 23 0 1263 1449 687739742 687739556 7.130000e-53 219
22 TraesCS2A01G159600 chr3B 94.512 164 9 0 2779 2942 596427218 596427381 1.960000e-63 254
23 TraesCS2A01G159600 chr1A 93.902 164 10 0 2779 2942 147347407 147347244 9.100000e-62 248
24 TraesCS2A01G159600 chr1A 88.298 188 22 0 1263 1450 570155315 570155128 4.260000e-55 226
25 TraesCS2A01G159600 chr1A 86.559 186 25 0 1264 1449 570159575 570159760 5.550000e-49 206
26 TraesCS2A01G159600 chr4A 86.631 187 25 0 1263 1449 624921446 624921260 1.540000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G159600 chr2A 107315360 107319596 4236 False 7825.000000 7825 100.000000 1 4237 1 chr2A.!!$F1 4236
1 TraesCS2A01G159600 chr2D 110907631 110912688 5057 False 1619.666667 2385 89.831333 1 4191 3 chr2D.!!$F1 4190
2 TraesCS2A01G159600 chr2B 160280617 160283369 2752 False 1590.000000 1901 90.414000 839 3743 2 chr2B.!!$F3 2904
3 TraesCS2A01G159600 chr2B 160220776 160221542 766 False 845.000000 845 86.667000 51 846 1 chr2B.!!$F1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 398 0.038159 GCTCTACCTCTGCACACGTT 60.038 55.0 0.0 0.0 0.0 3.99 F
1401 1431 0.036732 TGTTCGATGCCAAGGAGCTT 59.963 50.0 0.0 0.0 0.0 3.74 F
1905 1936 0.034337 TGTGGCAAGTAACTCGGGAC 59.966 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 1917 0.034337 GTCCCGAGTTACTTGCCACA 59.966 55.0 0.00 0.0 0.00 4.17 R
3228 3663 0.179045 CCGGCCAGCTGCTAGTTAAT 60.179 55.0 8.66 0.0 40.92 1.40 R
3506 3965 0.459489 TCTTGTTGGCAAAGCACACC 59.541 50.0 0.00 0.0 33.73 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 5.841957 ACCTGATCATAAACATGCCTTTC 57.158 39.130 0.00 0.00 0.00 2.62
67 69 5.537188 TCATAAACATGCCTTTCGCTTTTT 58.463 33.333 0.00 0.00 38.78 1.94
70 72 7.653713 TCATAAACATGCCTTTCGCTTTTTAAA 59.346 29.630 0.00 0.00 38.78 1.52
129 134 5.971763 TCAATGTTGCAAGTGTTACCTTTT 58.028 33.333 0.00 0.00 0.00 2.27
162 167 2.795329 AGGTCATGAACGAAGCCATTT 58.205 42.857 4.80 0.00 0.00 2.32
186 191 2.224499 TGCTTGTGTCCTTGCATCAGTA 60.224 45.455 0.00 0.00 0.00 2.74
187 192 3.012518 GCTTGTGTCCTTGCATCAGTAT 58.987 45.455 0.00 0.00 0.00 2.12
188 193 3.064545 GCTTGTGTCCTTGCATCAGTATC 59.935 47.826 0.00 0.00 0.00 2.24
189 194 3.979101 TGTGTCCTTGCATCAGTATCA 57.021 42.857 0.00 0.00 0.00 2.15
190 195 3.865446 TGTGTCCTTGCATCAGTATCAG 58.135 45.455 0.00 0.00 0.00 2.90
191 196 3.261643 TGTGTCCTTGCATCAGTATCAGT 59.738 43.478 0.00 0.00 0.00 3.41
211 216 6.425735 TCAGTTCCATGTATGATCCATGTTT 58.574 36.000 8.90 0.00 38.39 2.83
245 251 9.515226 AACTGGACAGTATTATAAGCTCAAAAA 57.485 29.630 5.25 0.00 41.58 1.94
281 293 8.836268 AACAATGTCAAATATCTGCAATGTTT 57.164 26.923 0.00 0.00 0.00 2.83
364 380 8.499162 AGTCTTATTTTATCTGATGCATTACGC 58.501 33.333 0.00 0.00 42.89 4.42
367 383 8.607441 TTATTTTATCTGATGCATTACGCTCT 57.393 30.769 0.00 0.00 43.06 4.09
382 398 0.038159 GCTCTACCTCTGCACACGTT 60.038 55.000 0.00 0.00 0.00 3.99
388 404 1.013596 CCTCTGCACACGTTGTTTCA 58.986 50.000 0.00 0.00 0.00 2.69
417 433 3.372206 CGCTAGACACCTCTCCATTTTTG 59.628 47.826 0.00 0.00 0.00 2.44
428 444 3.193267 TCTCCATTTTTGAGGCATTTCCG 59.807 43.478 0.00 0.00 40.77 4.30
437 453 2.562298 TGAGGCATTTCCGCAATTTCTT 59.438 40.909 0.00 0.00 41.87 2.52
439 455 2.562298 AGGCATTTCCGCAATTTCTTGA 59.438 40.909 0.00 0.00 40.77 3.02
449 465 5.009631 CCGCAATTTCTTGATGGGGATATA 58.990 41.667 2.25 0.00 46.78 0.86
450 466 5.653769 CCGCAATTTCTTGATGGGGATATAT 59.346 40.000 2.25 0.00 46.78 0.86
594 611 4.718858 TCCGTTTGTTTTACTCATCGTG 57.281 40.909 0.00 0.00 0.00 4.35
710 727 9.825972 CACTTTTGTGTATATCAGTGGTAAAAG 57.174 33.333 0.00 0.00 44.94 2.27
834 851 5.975693 TTTGTTCCTTTGTCTGACTTTGT 57.024 34.783 9.51 0.00 0.00 2.83
835 852 7.455641 TTTTGTTCCTTTGTCTGACTTTGTA 57.544 32.000 9.51 0.00 0.00 2.41
904 921 8.684386 TTAATTCAGTTGTTTCCAGACATGTA 57.316 30.769 0.00 0.00 0.00 2.29
964 981 7.255942 CCACATCCTGTCCTTCACTTTTAATTT 60.256 37.037 0.00 0.00 0.00 1.82
1005 1022 3.566523 GTCTATCGGACTCTAAATGGCG 58.433 50.000 0.00 0.00 41.46 5.69
1090 1110 4.159901 TGAGCATCGATGGCGGCA 62.160 61.111 26.00 16.34 38.61 5.69
1166 1186 9.720769 GCTTAAGGTAAGATATATGCCTACAAA 57.279 33.333 4.29 0.00 38.02 2.83
1221 1241 5.615925 ACTGTTTCCAGAAGAACACTAGT 57.384 39.130 0.00 0.00 41.50 2.57
1253 1283 6.071051 TGTGTTATGTGAACTCCTGCACTATA 60.071 38.462 0.00 0.00 36.05 1.31
1254 1284 6.986817 GTGTTATGTGAACTCCTGCACTATAT 59.013 38.462 0.00 0.00 36.05 0.86
1308 1338 4.261825 GCTAGGATCGCAGACTACTTTGAT 60.262 45.833 0.00 0.00 42.51 2.57
1311 1341 4.081420 AGGATCGCAGACTACTTTGATGTT 60.081 41.667 0.00 0.00 42.51 2.71
1317 1347 3.990469 CAGACTACTTTGATGTTGTCGCT 59.010 43.478 0.00 0.00 43.67 4.93
1380 1410 4.699522 GACAAGAACGGGCGGCCT 62.700 66.667 27.04 8.20 0.00 5.19
1401 1431 0.036732 TGTTCGATGCCAAGGAGCTT 59.963 50.000 0.00 0.00 0.00 3.74
1416 1446 2.935201 GGAGCTTGCTCAGTTCTACATG 59.065 50.000 21.97 0.00 33.26 3.21
1482 1512 9.110502 CATTGGATGTCCATATCATCATAAGAG 57.889 37.037 1.98 0.00 46.97 2.85
1486 1516 8.976353 GGATGTCCATATCATCATAAGAGTAGT 58.024 37.037 7.93 0.00 42.16 2.73
1510 1540 9.971922 AGTTTTGTTTACTACGTACTATTCAGT 57.028 29.630 0.00 0.00 38.91 3.41
1594 1624 2.919228 AGTTGCAGGAACTCGTTCTTT 58.081 42.857 0.51 0.00 41.37 2.52
1645 1675 2.360726 GGGCCCAAGTACAACGGG 60.361 66.667 19.95 9.36 43.42 5.28
1678 1708 1.080025 GCTGCTTCGTCGGTACCTT 60.080 57.895 10.90 0.00 0.00 3.50
1699 1729 0.106149 GTGAGACCAAGTTGGACGGT 59.894 55.000 28.80 7.38 40.96 4.83
1736 1766 2.557056 GTCATCCCGACCTTCGATATCA 59.443 50.000 3.12 0.00 43.74 2.15
1782 1813 0.613777 AGCTTTCAGGTACCCCTTCG 59.386 55.000 8.74 0.00 39.89 3.79
1787 1818 0.613853 TCAGGTACCCCTTCGTCCTG 60.614 60.000 8.74 0.00 44.69 3.86
1805 1836 5.518847 CGTCCTGAATTACTTATCGCAGAAA 59.481 40.000 0.00 0.00 43.58 2.52
1808 1839 7.011482 GTCCTGAATTACTTATCGCAGAAATGT 59.989 37.037 0.00 0.00 43.58 2.71
1882 1913 6.786967 AAAATACGTCTAGATACACCCTGT 57.213 37.500 0.00 0.00 0.00 4.00
1883 1914 6.786967 AAATACGTCTAGATACACCCTGTT 57.213 37.500 0.00 0.00 0.00 3.16
1884 1915 6.388435 AATACGTCTAGATACACCCTGTTC 57.612 41.667 0.00 0.00 0.00 3.18
1885 1916 3.022406 ACGTCTAGATACACCCTGTTCC 58.978 50.000 0.00 0.00 0.00 3.62
1886 1917 3.288964 CGTCTAGATACACCCTGTTCCT 58.711 50.000 0.00 0.00 0.00 3.36
1888 1919 4.024670 GTCTAGATACACCCTGTTCCTGT 58.975 47.826 0.00 0.00 0.00 4.00
1889 1920 4.023980 TCTAGATACACCCTGTTCCTGTG 58.976 47.826 0.00 0.00 36.11 3.66
1894 1925 1.151450 ACCCTGTTCCTGTGGCAAG 59.849 57.895 0.00 0.00 0.00 4.01
1895 1926 1.151450 CCCTGTTCCTGTGGCAAGT 59.849 57.895 0.00 0.00 0.00 3.16
1898 1929 1.880027 CCTGTTCCTGTGGCAAGTAAC 59.120 52.381 0.00 0.00 0.00 2.50
1899 1930 2.487265 CCTGTTCCTGTGGCAAGTAACT 60.487 50.000 0.00 0.00 0.00 2.24
1900 1931 2.808543 CTGTTCCTGTGGCAAGTAACTC 59.191 50.000 0.00 0.00 0.00 3.01
1901 1932 1.798813 GTTCCTGTGGCAAGTAACTCG 59.201 52.381 0.00 0.00 0.00 4.18
1902 1933 0.320374 TCCTGTGGCAAGTAACTCGG 59.680 55.000 0.00 0.00 0.00 4.63
1903 1934 0.673644 CCTGTGGCAAGTAACTCGGG 60.674 60.000 0.00 0.00 0.00 5.14
1904 1935 0.320374 CTGTGGCAAGTAACTCGGGA 59.680 55.000 0.00 0.00 0.00 5.14
1905 1936 0.034337 TGTGGCAAGTAACTCGGGAC 59.966 55.000 0.00 0.00 0.00 4.46
1906 1937 0.034337 GTGGCAAGTAACTCGGGACA 59.966 55.000 0.00 0.00 0.00 4.02
1908 1939 1.141254 TGGCAAGTAACTCGGGACAAA 59.859 47.619 0.00 0.00 0.00 2.83
1909 1940 1.804748 GGCAAGTAACTCGGGACAAAG 59.195 52.381 0.00 0.00 0.00 2.77
1910 1941 2.549349 GGCAAGTAACTCGGGACAAAGA 60.549 50.000 0.00 0.00 0.00 2.52
1911 1942 2.737252 GCAAGTAACTCGGGACAAAGAG 59.263 50.000 0.00 0.00 0.00 2.85
1912 1943 3.326747 CAAGTAACTCGGGACAAAGAGG 58.673 50.000 0.00 0.00 0.00 3.69
1913 1944 2.885616 AGTAACTCGGGACAAAGAGGA 58.114 47.619 0.00 0.00 0.00 3.71
1915 1946 2.770164 AACTCGGGACAAAGAGGATG 57.230 50.000 0.00 0.00 0.00 3.51
1918 1949 3.375699 ACTCGGGACAAAGAGGATGTAT 58.624 45.455 0.00 0.00 0.00 2.29
1925 1956 5.482908 GGACAAAGAGGATGTATATCGCAT 58.517 41.667 0.00 0.00 33.98 4.73
1929 1960 7.840931 ACAAAGAGGATGTATATCGCATATCA 58.159 34.615 0.00 0.00 33.98 2.15
1935 1966 7.440198 AGGATGTATATCGCATATCAGATTGG 58.560 38.462 0.00 0.00 33.98 3.16
1948 1979 3.928727 CAGATTGGTCTGTGCACAATT 57.071 42.857 21.98 2.02 45.51 2.32
1949 1980 3.829948 CAGATTGGTCTGTGCACAATTC 58.170 45.455 21.98 13.22 45.51 2.17
1951 1982 4.022589 CAGATTGGTCTGTGCACAATTCTT 60.023 41.667 21.98 4.28 45.51 2.52
1952 1983 4.586001 AGATTGGTCTGTGCACAATTCTTT 59.414 37.500 21.98 4.83 35.17 2.52
1954 1985 6.435277 AGATTGGTCTGTGCACAATTCTTTAT 59.565 34.615 21.98 8.42 35.17 1.40
1957 1988 6.215121 TGGTCTGTGCACAATTCTTTATTTG 58.785 36.000 21.98 4.45 0.00 2.32
1958 1989 6.040278 TGGTCTGTGCACAATTCTTTATTTGA 59.960 34.615 21.98 6.95 0.00 2.69
1959 1990 6.922957 GGTCTGTGCACAATTCTTTATTTGAA 59.077 34.615 21.98 0.00 0.00 2.69
1960 1991 7.437862 GGTCTGTGCACAATTCTTTATTTGAAA 59.562 33.333 21.98 0.00 0.00 2.69
1961 1992 8.482429 GTCTGTGCACAATTCTTTATTTGAAAG 58.518 33.333 21.98 2.69 0.00 2.62
1962 1993 7.652909 TCTGTGCACAATTCTTTATTTGAAAGG 59.347 33.333 21.98 2.32 0.00 3.11
1964 1995 7.652909 TGTGCACAATTCTTTATTTGAAAGGAG 59.347 33.333 19.28 0.00 0.00 3.69
1965 1996 7.653311 GTGCACAATTCTTTATTTGAAAGGAGT 59.347 33.333 13.17 0.00 0.00 3.85
1966 1997 7.652909 TGCACAATTCTTTATTTGAAAGGAGTG 59.347 33.333 4.64 4.64 37.00 3.51
1981 2198 8.806429 TGAAAGGAGTGAAATAAGATTATGCA 57.194 30.769 0.00 0.00 0.00 3.96
1986 2203 8.139989 AGGAGTGAAATAAGATTATGCATTTGC 58.860 33.333 3.54 0.00 42.50 3.68
2009 2226 9.791820 TTGCAACTTCATCATATGTTATCAAAG 57.208 29.630 1.90 2.84 0.00 2.77
2010 2227 8.959548 TGCAACTTCATCATATGTTATCAAAGT 58.040 29.630 1.90 3.39 0.00 2.66
2011 2228 9.443283 GCAACTTCATCATATGTTATCAAAGTC 57.557 33.333 1.90 0.00 0.00 3.01
2015 2232 9.608617 CTTCATCATATGTTATCAAAGTCATGC 57.391 33.333 1.90 0.00 0.00 4.06
2016 2233 8.680039 TCATCATATGTTATCAAAGTCATGCA 57.320 30.769 1.90 0.00 0.00 3.96
2017 2234 9.292195 TCATCATATGTTATCAAAGTCATGCAT 57.708 29.630 1.90 0.00 0.00 3.96
2025 2242 9.356433 TGTTATCAAAGTCATGCATAATGTTTG 57.644 29.630 0.00 7.66 37.56 2.93
2028 2245 8.915871 ATCAAAGTCATGCATAATGTTTGTAC 57.084 30.769 16.43 0.00 35.37 2.90
2029 2246 7.880105 TCAAAGTCATGCATAATGTTTGTACA 58.120 30.769 16.43 0.00 35.37 2.90
2030 2247 8.355913 TCAAAGTCATGCATAATGTTTGTACAA 58.644 29.630 3.59 3.59 37.91 2.41
2031 2248 8.976471 CAAAGTCATGCATAATGTTTGTACAAA 58.024 29.630 17.01 17.01 37.91 2.83
2032 2249 9.709495 AAAGTCATGCATAATGTTTGTACAAAT 57.291 25.926 23.11 10.80 37.91 2.32
2033 2250 8.692110 AGTCATGCATAATGTTTGTACAAATG 57.308 30.769 23.11 17.19 37.91 2.32
2034 2251 7.276218 AGTCATGCATAATGTTTGTACAAATGC 59.724 33.333 26.07 26.07 46.90 3.56
2129 2346 9.793259 AACAAGTTAATGAACTAGGAATCTGAA 57.207 29.630 0.00 0.00 45.50 3.02
2130 2347 9.793259 ACAAGTTAATGAACTAGGAATCTGAAA 57.207 29.630 0.00 0.00 45.50 2.69
2133 2350 9.442047 AGTTAATGAACTAGGAATCTGAAAGTG 57.558 33.333 0.00 0.00 44.36 3.16
2134 2351 9.220767 GTTAATGAACTAGGAATCTGAAAGTGT 57.779 33.333 0.00 0.00 31.28 3.55
2138 2355 8.777865 TGAACTAGGAATCTGAAAGTGTTATG 57.222 34.615 0.00 0.00 33.76 1.90
2139 2356 8.375506 TGAACTAGGAATCTGAAAGTGTTATGT 58.624 33.333 0.00 0.00 33.76 2.29
2140 2357 9.220767 GAACTAGGAATCTGAAAGTGTTATGTT 57.779 33.333 0.00 0.00 33.76 2.71
2145 2362 9.574516 AGGAATCTGAAAGTGTTATGTTAAAGT 57.425 29.630 0.00 0.00 33.76 2.66
2229 2446 7.745620 AAAAACTAGACATGTTTTCTCCGAT 57.254 32.000 0.00 0.00 43.94 4.18
2230 2447 8.842358 AAAAACTAGACATGTTTTCTCCGATA 57.158 30.769 0.00 0.00 43.94 2.92
2231 2448 9.449719 AAAAACTAGACATGTTTTCTCCGATAT 57.550 29.630 0.00 0.00 43.94 1.63
2234 2451 9.915629 AACTAGACATGTTTTCTCCGATATATC 57.084 33.333 0.00 2.34 0.00 1.63
2235 2452 9.303116 ACTAGACATGTTTTCTCCGATATATCT 57.697 33.333 10.93 0.00 0.00 1.98
2238 2455 9.078990 AGACATGTTTTCTCCGATATATCTACA 57.921 33.333 10.93 4.42 0.00 2.74
2239 2456 9.862371 GACATGTTTTCTCCGATATATCTACAT 57.138 33.333 10.93 6.16 0.00 2.29
2266 2483 8.379457 TCGTCTGATATATTACCTGATATCCG 57.621 38.462 0.00 0.00 35.16 4.18
2267 2484 7.444487 TCGTCTGATATATTACCTGATATCCGG 59.556 40.741 11.36 11.36 35.16 5.14
2268 2485 7.371936 GTCTGATATATTACCTGATATCCGGC 58.628 42.308 12.73 0.00 35.16 6.13
2269 2486 7.014326 GTCTGATATATTACCTGATATCCGGCA 59.986 40.741 12.73 0.00 35.16 5.69
2270 2487 7.730332 TCTGATATATTACCTGATATCCGGCAT 59.270 37.037 12.73 8.07 35.16 4.40
2271 2488 7.896811 TGATATATTACCTGATATCCGGCATC 58.103 38.462 12.73 2.35 35.16 3.91
2272 2489 7.730332 TGATATATTACCTGATATCCGGCATCT 59.270 37.037 12.73 2.16 35.16 2.90
2273 2490 3.961480 TTACCTGATATCCGGCATCTG 57.039 47.619 12.73 13.65 0.00 2.90
2274 2491 2.015456 ACCTGATATCCGGCATCTGA 57.985 50.000 12.73 0.00 0.00 3.27
2275 2492 2.544721 ACCTGATATCCGGCATCTGAT 58.455 47.619 12.73 4.66 0.00 2.90
2276 2493 3.713003 ACCTGATATCCGGCATCTGATA 58.287 45.455 12.73 3.22 0.00 2.15
2277 2494 4.293494 ACCTGATATCCGGCATCTGATAT 58.707 43.478 12.73 7.36 36.99 1.63
2278 2495 5.458595 ACCTGATATCCGGCATCTGATATA 58.541 41.667 12.73 1.97 35.00 0.86
2279 2496 6.080682 ACCTGATATCCGGCATCTGATATAT 58.919 40.000 12.73 6.15 35.00 0.86
2280 2497 6.210385 ACCTGATATCCGGCATCTGATATATC 59.790 42.308 12.73 5.73 35.00 1.63
2281 2498 6.259550 TGATATCCGGCATCTGATATATCG 57.740 41.667 14.62 3.67 35.00 2.92
2282 2499 6.003950 TGATATCCGGCATCTGATATATCGA 58.996 40.000 14.62 8.59 35.00 3.59
2283 2500 6.490040 TGATATCCGGCATCTGATATATCGAA 59.510 38.462 14.62 0.00 35.00 3.71
2284 2501 4.639135 TCCGGCATCTGATATATCGAAG 57.361 45.455 8.19 6.79 0.00 3.79
2285 2502 3.119291 CCGGCATCTGATATATCGAAGC 58.881 50.000 18.18 18.18 0.00 3.86
2286 2503 3.119291 CGGCATCTGATATATCGAAGCC 58.881 50.000 26.38 26.38 38.99 4.35
2287 2504 3.429410 CGGCATCTGATATATCGAAGCCA 60.429 47.826 30.40 10.27 40.58 4.75
2288 2505 4.507710 GGCATCTGATATATCGAAGCCAA 58.492 43.478 28.69 7.39 40.44 4.52
2289 2506 4.937620 GGCATCTGATATATCGAAGCCAAA 59.062 41.667 28.69 6.85 40.44 3.28
2290 2507 5.163814 GGCATCTGATATATCGAAGCCAAAC 60.164 44.000 28.69 14.56 40.44 2.93
2291 2508 5.163814 GCATCTGATATATCGAAGCCAAACC 60.164 44.000 16.76 0.00 0.00 3.27
2292 2509 4.556233 TCTGATATATCGAAGCCAAACCG 58.444 43.478 8.19 0.00 0.00 4.44
2293 2510 3.659786 TGATATATCGAAGCCAAACCGG 58.340 45.455 0.00 0.00 38.11 5.28
2294 2511 3.070446 TGATATATCGAAGCCAAACCGGT 59.930 43.478 0.00 0.00 36.97 5.28
2295 2512 4.281435 TGATATATCGAAGCCAAACCGGTA 59.719 41.667 8.00 0.00 36.97 4.02
2296 2513 2.298411 TATCGAAGCCAAACCGGTAC 57.702 50.000 8.00 0.00 36.97 3.34
2316 2533 7.745620 GGTACGAATCTGATATCCCATTTTT 57.254 36.000 0.00 0.00 0.00 1.94
2317 2534 7.584987 GGTACGAATCTGATATCCCATTTTTG 58.415 38.462 0.00 0.00 0.00 2.44
2318 2535 7.444183 GGTACGAATCTGATATCCCATTTTTGA 59.556 37.037 0.00 0.00 0.00 2.69
2319 2536 7.880160 ACGAATCTGATATCCCATTTTTGAA 57.120 32.000 0.00 0.00 0.00 2.69
2320 2537 7.934457 ACGAATCTGATATCCCATTTTTGAAG 58.066 34.615 0.00 0.00 0.00 3.02
2321 2538 6.860023 CGAATCTGATATCCCATTTTTGAAGC 59.140 38.462 0.00 0.00 0.00 3.86
2322 2539 7.255381 CGAATCTGATATCCCATTTTTGAAGCT 60.255 37.037 0.00 0.00 0.00 3.74
2323 2540 7.909485 ATCTGATATCCCATTTTTGAAGCTT 57.091 32.000 0.00 0.00 0.00 3.74
2324 2541 7.104043 TCTGATATCCCATTTTTGAAGCTTG 57.896 36.000 2.10 0.00 0.00 4.01
2325 2542 6.097270 TCTGATATCCCATTTTTGAAGCTTGG 59.903 38.462 2.10 0.00 0.00 3.61
2345 2562 5.845391 TGGTTTTACCAGGAAAGAAGTTG 57.155 39.130 0.00 0.00 44.79 3.16
2472 2898 0.934496 CGAAAAACGCACTCCTGTCA 59.066 50.000 0.00 0.00 34.51 3.58
2530 2956 2.579787 CGGCGCACTACTTCGAGG 60.580 66.667 10.83 0.00 0.00 4.63
2607 3033 1.445871 CCAACAACCCCGTAAGCTAC 58.554 55.000 0.00 0.00 0.00 3.58
2640 3066 2.677003 CCGGCCACAACACATCGAC 61.677 63.158 2.24 0.00 0.00 4.20
2666 3096 2.100197 CCCTGAATCTCTCACGTACCA 58.900 52.381 0.00 0.00 0.00 3.25
2774 3209 1.080025 CTTCGTGGAGAACCCGGTC 60.080 63.158 0.00 0.00 37.93 4.79
2777 3212 2.572284 GTGGAGAACCCGGTCGAG 59.428 66.667 0.00 0.00 37.93 4.04
2802 3237 1.442769 CAAGTTCATGGTGGTCTCCG 58.557 55.000 0.00 0.00 0.00 4.63
3149 3584 3.161450 GTGGAGATGCCCGGCCTA 61.161 66.667 7.03 0.00 34.97 3.93
3188 3623 2.010817 CGCCAAGTTCGCAAAGCAC 61.011 57.895 0.00 0.00 0.00 4.40
3228 3663 0.030638 GCGCAAAAAGGTGCTTCAGA 59.969 50.000 0.30 0.00 42.62 3.27
3263 3701 3.839432 GGCCGGCTCGCTCTACTT 61.839 66.667 28.56 0.00 0.00 2.24
3270 3708 1.996191 GGCTCGCTCTACTTTGTTGAG 59.004 52.381 5.13 5.13 38.17 3.02
3366 3809 9.056005 CAGTTATGTAATAATACTGTGCCACAT 57.944 33.333 0.00 0.00 41.51 3.21
3392 3845 6.795590 TGGAAAATAGATTAAGGGTGTTCCA 58.204 36.000 0.00 0.00 39.63 3.53
3401 3854 1.047801 AGGGTGTTCCATGTTTTGCC 58.952 50.000 0.00 0.00 38.24 4.52
3442 3895 1.937191 ATTTGCCTTGTTTCCCGGAT 58.063 45.000 0.73 0.00 0.00 4.18
3455 3908 5.045869 TGTTTCCCGGATTATCTTTCAGTCT 60.046 40.000 0.73 0.00 0.00 3.24
3463 3916 8.798402 CCGGATTATCTTTCAGTCTAATACTCT 58.202 37.037 0.00 0.00 35.76 3.24
3483 3936 9.706691 ATACTCTTTCAAGTCTAACAAATTCGA 57.293 29.630 0.00 0.00 0.00 3.71
3484 3937 7.852516 ACTCTTTCAAGTCTAACAAATTCGAC 58.147 34.615 0.00 0.00 32.06 4.20
3485 3938 7.711339 ACTCTTTCAAGTCTAACAAATTCGACT 59.289 33.333 0.00 0.00 41.37 4.18
3486 3939 9.193133 CTCTTTCAAGTCTAACAAATTCGACTA 57.807 33.333 0.00 0.00 39.32 2.59
3487 3940 9.537192 TCTTTCAAGTCTAACAAATTCGACTAA 57.463 29.630 0.00 0.00 39.32 2.24
3488 3941 9.582223 CTTTCAAGTCTAACAAATTCGACTAAC 57.418 33.333 0.00 0.00 39.32 2.34
3506 3965 6.564312 CGACTAACGACCTCATAGTCATAGTG 60.564 46.154 11.42 3.01 43.59 2.74
3597 4060 1.480137 CTTGTAGGCTGAGGAGACTGG 59.520 57.143 0.00 0.00 44.43 4.00
3710 4173 6.238103 CGTATTTCATATTTCAGCCGTGTCTT 60.238 38.462 0.00 0.00 0.00 3.01
3721 4184 1.813513 CCGTGTCTTTGCAGAGGAAT 58.186 50.000 4.15 0.00 0.00 3.01
3752 5158 9.037737 GCATTGATAAACAAATGATGCAAGTAT 57.962 29.630 0.00 0.00 42.03 2.12
3761 5174 8.995027 ACAAATGATGCAAGTATATTTAGGGA 57.005 30.769 0.00 0.00 0.00 4.20
3775 5188 9.878599 GTATATTTAGGGAAACAAATGATGTCG 57.121 33.333 0.00 0.00 42.99 4.35
3776 5189 5.637006 TTTAGGGAAACAAATGATGTCGG 57.363 39.130 0.00 0.00 42.99 4.79
3813 5226 7.818930 CCCAGTTGAAGTTTTGCATTTGTATAT 59.181 33.333 0.00 0.00 0.00 0.86
3827 5240 6.667370 CATTTGTATATATGGACAAAGCGCA 58.333 36.000 11.47 0.00 45.84 6.09
3831 5244 5.994668 TGTATATATGGACAAAGCGCATCAA 59.005 36.000 11.47 0.00 0.00 2.57
3833 5246 1.538047 ATGGACAAAGCGCATCAAGT 58.462 45.000 11.47 0.00 0.00 3.16
3835 5248 1.804151 TGGACAAAGCGCATCAAGTAC 59.196 47.619 11.47 1.61 0.00 2.73
3838 5251 3.307242 GGACAAAGCGCATCAAGTACTAG 59.693 47.826 11.47 0.00 0.00 2.57
3844 5257 4.051922 AGCGCATCAAGTACTAGTAATGC 58.948 43.478 20.33 20.33 36.91 3.56
3878 5291 4.330250 ACCTGTGGAATCTCATTGTCTTG 58.670 43.478 0.00 0.00 0.00 3.02
3901 5314 1.134491 CAAGGTGACCGTAATCCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
4000 5413 9.392021 GGAAAGCTACTACTTATATACGTGTTC 57.608 37.037 0.00 0.00 0.00 3.18
4082 5517 4.272504 TGAAGACACAATGAAGAACGAACC 59.727 41.667 0.00 0.00 0.00 3.62
4098 5533 2.788786 CGAACCAACACAATTGCTTCAC 59.211 45.455 5.05 0.00 0.00 3.18
4109 5544 0.250295 TTGCTTCACCGAGTCCCAAG 60.250 55.000 0.00 0.00 0.00 3.61
4187 5623 1.202627 GGCATTTGGACCAAAAGCACA 60.203 47.619 35.31 12.13 45.78 4.57
4191 5627 2.356665 TTGGACCAAAAGCACAGCTA 57.643 45.000 3.84 0.00 38.25 3.32
4192 5628 1.896220 TGGACCAAAAGCACAGCTAG 58.104 50.000 0.00 0.00 38.25 3.42
4193 5629 0.523519 GGACCAAAAGCACAGCTAGC 59.476 55.000 6.62 6.62 38.25 3.42
4194 5630 1.528129 GACCAAAAGCACAGCTAGCT 58.472 50.000 12.68 12.68 45.97 3.32
4195 5631 1.466558 GACCAAAAGCACAGCTAGCTC 59.533 52.381 16.15 3.70 42.53 4.09
4196 5632 1.072965 ACCAAAAGCACAGCTAGCTCT 59.927 47.619 16.15 6.42 42.53 4.09
4197 5633 2.303022 ACCAAAAGCACAGCTAGCTCTA 59.697 45.455 16.15 0.00 42.53 2.43
4198 5634 2.935201 CCAAAAGCACAGCTAGCTCTAG 59.065 50.000 16.15 6.64 42.53 2.43
4213 5649 5.867903 AGCTCTAGCATATGTCATATCCC 57.132 43.478 4.29 0.00 45.16 3.85
4214 5650 5.527385 AGCTCTAGCATATGTCATATCCCT 58.473 41.667 4.29 5.34 45.16 4.20
4215 5651 6.677552 AGCTCTAGCATATGTCATATCCCTA 58.322 40.000 4.29 6.11 45.16 3.53
4216 5652 7.304479 AGCTCTAGCATATGTCATATCCCTAT 58.696 38.462 4.29 0.00 45.16 2.57
4217 5653 8.452056 AGCTCTAGCATATGTCATATCCCTATA 58.548 37.037 4.29 0.53 45.16 1.31
4218 5654 9.253832 GCTCTAGCATATGTCATATCCCTATAT 57.746 37.037 4.29 0.00 41.59 0.86
4220 5656 9.539194 TCTAGCATATGTCATATCCCTATATGG 57.461 37.037 4.29 0.00 43.53 2.74
4221 5657 7.013823 AGCATATGTCATATCCCTATATGGC 57.986 40.000 4.29 3.58 46.54 4.40
4226 5662 4.310769 GTCATATCCCTATATGGCGATGC 58.689 47.826 5.74 0.00 43.53 3.91
4227 5663 3.966665 TCATATCCCTATATGGCGATGCA 59.033 43.478 0.00 0.00 43.53 3.96
4228 5664 4.408596 TCATATCCCTATATGGCGATGCAA 59.591 41.667 0.00 0.00 43.53 4.08
4229 5665 3.939740 ATCCCTATATGGCGATGCAAT 57.060 42.857 0.00 0.00 0.00 3.56
4230 5666 3.719268 TCCCTATATGGCGATGCAATT 57.281 42.857 0.00 0.00 0.00 2.32
4231 5667 4.032960 TCCCTATATGGCGATGCAATTT 57.967 40.909 0.00 0.00 0.00 1.82
4232 5668 4.406456 TCCCTATATGGCGATGCAATTTT 58.594 39.130 0.00 0.00 0.00 1.82
4233 5669 4.832266 TCCCTATATGGCGATGCAATTTTT 59.168 37.500 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.406916 TCAGGTAGCCCAAAAATTATCTTACA 58.593 34.615 0.00 0.00 0.00 2.41
19 20 7.875327 TCAGGTAGCCCAAAAATTATCTTAC 57.125 36.000 0.00 0.00 0.00 2.34
27 28 6.667414 TGTTTATGATCAGGTAGCCCAAAAAT 59.333 34.615 0.09 0.00 0.00 1.82
29 30 5.575157 TGTTTATGATCAGGTAGCCCAAAA 58.425 37.500 0.09 0.00 0.00 2.44
36 37 6.293081 CGAAAGGCATGTTTATGATCAGGTAG 60.293 42.308 0.09 0.00 36.36 3.18
129 134 1.535028 CATGACCTTTGCGTGCACTTA 59.465 47.619 16.19 0.00 0.00 2.24
162 167 1.337703 GATGCAAGGACACAAGCAACA 59.662 47.619 0.00 0.00 40.76 3.33
307 319 9.524106 AAATTGTTTTAGTTTTTACTCCTTCGG 57.476 29.630 0.00 0.00 0.00 4.30
356 372 1.202417 TGCAGAGGTAGAGCGTAATGC 60.202 52.381 0.00 0.00 46.98 3.56
362 378 1.515088 CGTGTGCAGAGGTAGAGCG 60.515 63.158 0.00 0.00 0.00 5.03
364 380 1.000163 ACAACGTGTGCAGAGGTAGAG 60.000 52.381 9.80 5.98 0.00 2.43
367 383 2.206750 GAAACAACGTGTGCAGAGGTA 58.793 47.619 9.80 0.00 0.00 3.08
382 398 4.482386 GTGTCTAGCGTAGTCATGAAACA 58.518 43.478 0.00 0.00 0.00 2.83
388 404 3.207778 GAGAGGTGTCTAGCGTAGTCAT 58.792 50.000 0.00 0.00 30.97 3.06
417 433 2.925563 CAAGAAATTGCGGAAATGCCTC 59.074 45.455 0.00 0.00 0.00 4.70
437 453 6.240263 GGCCTGCATATAATATATCCCCATCA 60.240 42.308 0.00 0.00 0.00 3.07
439 455 5.859536 AGGCCTGCATATAATATATCCCCAT 59.140 40.000 3.11 0.00 0.00 4.00
449 465 7.394816 AGTAAAATACGAGGCCTGCATATAAT 58.605 34.615 12.00 0.54 0.00 1.28
450 466 6.765403 AGTAAAATACGAGGCCTGCATATAA 58.235 36.000 12.00 0.00 0.00 0.98
594 611 2.033550 AGATCACGTCTATCCTGAACGC 59.966 50.000 0.00 0.00 34.69 4.84
718 735 8.462143 TTGAGAATGTATACAGTCGAACTTTC 57.538 34.615 23.36 16.07 44.72 2.62
834 851 7.202972 ACAGCAGGGGTTATTGTTAACTATA 57.797 36.000 7.22 6.41 38.22 1.31
835 852 6.074698 ACAGCAGGGGTTATTGTTAACTAT 57.925 37.500 7.22 7.47 38.22 2.12
924 941 2.954318 GGATGTGGCAAAGCATACTGAT 59.046 45.455 0.00 0.00 0.00 2.90
1005 1022 4.516365 TTCTTCCGAAGAACTACCACTC 57.484 45.455 17.88 0.00 42.31 3.51
1090 1110 0.755686 GGAATGATCCCTCTGACGCT 59.244 55.000 0.00 0.00 40.10 5.07
1166 1186 8.535335 ACATACTTGATGACAAAGTAGATGAGT 58.465 33.333 8.69 0.00 39.06 3.41
1221 1241 6.481976 CAGGAGTTCACATAACACAGTAACAA 59.518 38.462 0.00 0.00 0.00 2.83
1253 1283 6.013032 CCCATCCAGTTTCTACATGGAGATAT 60.013 42.308 8.90 0.00 45.89 1.63
1254 1284 5.307976 CCCATCCAGTTTCTACATGGAGATA 59.692 44.000 8.90 0.19 45.89 1.98
1308 1338 2.661537 CTCGTGCCAGCGACAACA 60.662 61.111 0.00 0.00 36.80 3.33
1380 1410 0.881118 GCTCCTTGGCATCGAACAAA 59.119 50.000 0.00 0.00 0.00 2.83
1401 1431 2.164422 CTCGTCCATGTAGAACTGAGCA 59.836 50.000 0.00 0.00 0.00 4.26
1534 1564 9.295825 ACACTTTGATAAGGTGAAATGATGTTA 57.704 29.630 10.23 0.00 35.61 2.41
1549 1579 9.421806 CTTGGCATTCAAATTACACTTTGATAA 57.578 29.630 0.00 0.00 42.87 1.75
1645 1675 1.432270 GCAGCGCATGGAGGTACTTC 61.432 60.000 11.47 0.00 41.55 3.01
1736 1766 0.618458 ATCGTGGGTTGCAGGTATGT 59.382 50.000 0.00 0.00 0.00 2.29
1782 1813 6.903883 TTTCTGCGATAAGTAATTCAGGAC 57.096 37.500 0.00 0.00 0.00 3.85
1861 1892 5.301298 GGAACAGGGTGTATCTAGACGTATT 59.699 44.000 0.00 0.00 0.00 1.89
1862 1893 4.826183 GGAACAGGGTGTATCTAGACGTAT 59.174 45.833 0.00 0.00 0.00 3.06
1863 1894 4.080129 AGGAACAGGGTGTATCTAGACGTA 60.080 45.833 0.00 0.00 0.00 3.57
1864 1895 3.022406 GGAACAGGGTGTATCTAGACGT 58.978 50.000 0.00 0.00 0.00 4.34
1865 1896 3.066900 CAGGAACAGGGTGTATCTAGACG 59.933 52.174 0.00 0.00 0.00 4.18
1866 1897 4.024670 ACAGGAACAGGGTGTATCTAGAC 58.975 47.826 0.00 0.00 0.00 2.59
1867 1898 4.023980 CACAGGAACAGGGTGTATCTAGA 58.976 47.826 0.00 0.00 0.00 2.43
1868 1899 3.133003 CCACAGGAACAGGGTGTATCTAG 59.867 52.174 0.00 0.00 0.00 2.43
1869 1900 3.104512 CCACAGGAACAGGGTGTATCTA 58.895 50.000 0.00 0.00 0.00 1.98
1871 1902 1.679032 GCCACAGGAACAGGGTGTATC 60.679 57.143 0.00 0.00 0.00 2.24
1873 1904 1.057275 TGCCACAGGAACAGGGTGTA 61.057 55.000 0.00 0.00 0.00 2.90
1874 1905 1.932156 TTGCCACAGGAACAGGGTGT 61.932 55.000 0.00 0.00 0.00 4.16
1876 1907 1.151450 CTTGCCACAGGAACAGGGT 59.849 57.895 0.00 0.00 0.00 4.34
1877 1908 0.400213 TACTTGCCACAGGAACAGGG 59.600 55.000 0.00 0.00 0.00 4.45
1879 1910 2.808543 GAGTTACTTGCCACAGGAACAG 59.191 50.000 5.74 0.00 0.00 3.16
1880 1911 2.805295 CGAGTTACTTGCCACAGGAACA 60.805 50.000 5.74 0.00 0.00 3.18
1881 1912 1.798813 CGAGTTACTTGCCACAGGAAC 59.201 52.381 0.00 0.00 0.00 3.62
1882 1913 1.270625 CCGAGTTACTTGCCACAGGAA 60.271 52.381 0.00 0.00 0.00 3.36
1883 1914 0.320374 CCGAGTTACTTGCCACAGGA 59.680 55.000 0.00 0.00 0.00 3.86
1884 1915 0.673644 CCCGAGTTACTTGCCACAGG 60.674 60.000 0.00 0.00 0.00 4.00
1885 1916 0.320374 TCCCGAGTTACTTGCCACAG 59.680 55.000 0.00 0.00 0.00 3.66
1886 1917 0.034337 GTCCCGAGTTACTTGCCACA 59.966 55.000 0.00 0.00 0.00 4.17
1888 1919 0.759959 TTGTCCCGAGTTACTTGCCA 59.240 50.000 0.00 0.00 0.00 4.92
1889 1920 1.804748 CTTTGTCCCGAGTTACTTGCC 59.195 52.381 0.00 0.00 0.00 4.52
1894 1925 3.056035 ACATCCTCTTTGTCCCGAGTTAC 60.056 47.826 0.00 0.00 0.00 2.50
1895 1926 3.170717 ACATCCTCTTTGTCCCGAGTTA 58.829 45.455 0.00 0.00 0.00 2.24
1898 1929 5.620205 CGATATACATCCTCTTTGTCCCGAG 60.620 48.000 0.00 0.00 0.00 4.63
1899 1930 4.217767 CGATATACATCCTCTTTGTCCCGA 59.782 45.833 0.00 0.00 0.00 5.14
1900 1931 4.486090 CGATATACATCCTCTTTGTCCCG 58.514 47.826 0.00 0.00 0.00 5.14
1901 1932 4.246458 GCGATATACATCCTCTTTGTCCC 58.754 47.826 0.00 0.00 0.00 4.46
1902 1933 4.883083 TGCGATATACATCCTCTTTGTCC 58.117 43.478 0.00 0.00 0.00 4.02
1903 1934 7.976175 TGATATGCGATATACATCCTCTTTGTC 59.024 37.037 0.00 0.00 0.00 3.18
1904 1935 7.840931 TGATATGCGATATACATCCTCTTTGT 58.159 34.615 0.00 0.00 0.00 2.83
1905 1936 8.193438 TCTGATATGCGATATACATCCTCTTTG 58.807 37.037 0.00 0.00 0.00 2.77
1906 1937 8.298729 TCTGATATGCGATATACATCCTCTTT 57.701 34.615 0.00 0.00 0.00 2.52
1908 1939 8.358895 CAATCTGATATGCGATATACATCCTCT 58.641 37.037 0.00 0.00 0.00 3.69
1909 1940 7.598118 CCAATCTGATATGCGATATACATCCTC 59.402 40.741 0.00 0.00 0.00 3.71
1910 1941 7.070447 ACCAATCTGATATGCGATATACATCCT 59.930 37.037 0.00 0.00 0.00 3.24
1911 1942 7.212976 ACCAATCTGATATGCGATATACATCC 58.787 38.462 0.00 0.00 0.00 3.51
1912 1943 8.140628 AGACCAATCTGATATGCGATATACATC 58.859 37.037 0.00 0.00 32.29 3.06
1913 1944 8.016301 AGACCAATCTGATATGCGATATACAT 57.984 34.615 0.00 0.00 32.29 2.29
1929 1960 3.759581 AGAATTGTGCACAGACCAATCT 58.240 40.909 20.59 10.18 34.57 2.40
1935 1966 7.928908 TTCAAATAAAGAATTGTGCACAGAC 57.071 32.000 20.59 14.64 0.00 3.51
1939 1970 7.653311 ACTCCTTTCAAATAAAGAATTGTGCAC 59.347 33.333 10.75 10.75 0.00 4.57
1941 1972 7.867403 TCACTCCTTTCAAATAAAGAATTGTGC 59.133 33.333 0.00 0.00 0.00 4.57
1942 1973 9.748708 TTCACTCCTTTCAAATAAAGAATTGTG 57.251 29.630 0.00 0.00 0.00 3.33
1960 1991 8.139989 GCAAATGCATAATCTTATTTCACTCCT 58.860 33.333 0.00 0.00 41.59 3.69
1961 1992 8.290663 GCAAATGCATAATCTTATTTCACTCC 57.709 34.615 0.00 0.00 41.59 3.85
1979 2196 6.897259 AACATATGATGAAGTTGCAAATGC 57.103 33.333 10.38 0.00 42.50 3.56
1983 2200 9.791820 CTTTGATAACATATGATGAAGTTGCAA 57.208 29.630 10.38 0.00 0.00 4.08
1984 2201 8.959548 ACTTTGATAACATATGATGAAGTTGCA 58.040 29.630 10.38 0.00 0.00 4.08
1985 2202 9.443283 GACTTTGATAACATATGATGAAGTTGC 57.557 33.333 10.38 0.00 0.00 4.17
1989 2206 9.608617 GCATGACTTTGATAACATATGATGAAG 57.391 33.333 10.38 7.01 0.00 3.02
2000 2217 9.357652 ACAAACATTATGCATGACTTTGATAAC 57.642 29.630 21.27 0.00 34.58 1.89
2007 2224 9.142515 CATTTGTACAAACATTATGCATGACTT 57.857 29.630 22.78 0.00 36.24 3.01
2008 2225 7.276218 GCATTTGTACAAACATTATGCATGACT 59.724 33.333 27.10 7.10 44.86 3.41
2009 2226 7.393327 GCATTTGTACAAACATTATGCATGAC 58.607 34.615 27.10 12.08 44.86 3.06
2010 2227 7.522901 GCATTTGTACAAACATTATGCATGA 57.477 32.000 27.10 0.00 44.86 3.07
2104 2321 9.793259 TTTCAGATTCCTAGTTCATTAACTTGT 57.207 29.630 0.00 0.00 43.60 3.16
2109 2326 9.793259 AACACTTTCAGATTCCTAGTTCATTAA 57.207 29.630 0.00 0.00 0.00 1.40
2113 2330 8.375506 ACATAACACTTTCAGATTCCTAGTTCA 58.624 33.333 0.00 0.00 0.00 3.18
2114 2331 8.779354 ACATAACACTTTCAGATTCCTAGTTC 57.221 34.615 0.00 0.00 0.00 3.01
2119 2336 9.574516 ACTTTAACATAACACTTTCAGATTCCT 57.425 29.630 0.00 0.00 0.00 3.36
2209 2426 9.303116 AGATATATCGGAGAAAACATGTCTAGT 57.697 33.333 0.00 0.00 43.58 2.57
2213 2430 9.862371 ATGTAGATATATCGGAGAAAACATGTC 57.138 33.333 0.00 0.00 43.58 3.06
2240 2457 9.004717 CGGATATCAGGTAATATATCAGACGAT 57.995 37.037 4.83 0.00 36.99 3.73
2241 2458 7.444487 CCGGATATCAGGTAATATATCAGACGA 59.556 40.741 13.30 0.00 36.99 4.20
2242 2459 7.585867 CCGGATATCAGGTAATATATCAGACG 58.414 42.308 13.30 0.00 36.99 4.18
2243 2460 7.014326 TGCCGGATATCAGGTAATATATCAGAC 59.986 40.741 21.10 2.79 36.99 3.51
2244 2461 7.066781 TGCCGGATATCAGGTAATATATCAGA 58.933 38.462 21.10 0.00 36.99 3.27
2245 2462 7.290110 TGCCGGATATCAGGTAATATATCAG 57.710 40.000 21.10 0.00 36.99 2.90
2246 2463 7.730332 AGATGCCGGATATCAGGTAATATATCA 59.270 37.037 21.10 9.70 36.99 2.15
2247 2464 8.031864 CAGATGCCGGATATCAGGTAATATATC 58.968 40.741 21.10 11.76 35.31 1.63
2248 2465 7.730332 TCAGATGCCGGATATCAGGTAATATAT 59.270 37.037 21.10 3.55 33.54 0.86
2249 2466 7.066781 TCAGATGCCGGATATCAGGTAATATA 58.933 38.462 21.10 4.54 33.54 0.86
2250 2467 5.899547 TCAGATGCCGGATATCAGGTAATAT 59.100 40.000 21.10 11.12 33.54 1.28
2251 2468 5.269189 TCAGATGCCGGATATCAGGTAATA 58.731 41.667 21.10 7.92 33.54 0.98
2252 2469 4.096681 TCAGATGCCGGATATCAGGTAAT 58.903 43.478 21.10 15.39 33.54 1.89
2253 2470 3.506398 TCAGATGCCGGATATCAGGTAA 58.494 45.455 21.10 11.72 33.54 2.85
2254 2471 3.169512 TCAGATGCCGGATATCAGGTA 57.830 47.619 21.10 17.94 33.54 3.08
2255 2472 2.015456 TCAGATGCCGGATATCAGGT 57.985 50.000 21.10 4.37 33.54 4.00
2256 2473 4.952071 ATATCAGATGCCGGATATCAGG 57.048 45.455 16.79 16.79 36.04 3.86
2257 2474 6.150140 TCGATATATCAGATGCCGGATATCAG 59.850 42.308 5.05 5.37 39.64 2.90
2258 2475 6.003950 TCGATATATCAGATGCCGGATATCA 58.996 40.000 5.05 0.00 39.64 2.15
2259 2476 6.502136 TCGATATATCAGATGCCGGATATC 57.498 41.667 5.05 8.49 39.64 1.63
2260 2477 6.571344 GCTTCGATATATCAGATGCCGGATAT 60.571 42.308 21.35 0.00 41.12 1.63
2261 2478 5.278512 GCTTCGATATATCAGATGCCGGATA 60.279 44.000 21.35 0.00 34.75 2.59
2262 2479 4.500545 GCTTCGATATATCAGATGCCGGAT 60.501 45.833 21.35 0.00 31.35 4.18
2263 2480 3.181486 GCTTCGATATATCAGATGCCGGA 60.181 47.826 21.35 0.00 31.35 5.14
2264 2481 3.119291 GCTTCGATATATCAGATGCCGG 58.881 50.000 21.35 0.00 31.35 6.13
2265 2482 3.119291 GGCTTCGATATATCAGATGCCG 58.881 50.000 27.86 12.26 38.90 5.69
2266 2483 4.128925 TGGCTTCGATATATCAGATGCC 57.871 45.455 30.87 30.87 42.96 4.40
2267 2484 5.163814 GGTTTGGCTTCGATATATCAGATGC 60.164 44.000 22.55 22.55 33.87 3.91
2268 2485 5.062683 CGGTTTGGCTTCGATATATCAGATG 59.937 44.000 13.11 12.51 0.00 2.90
2269 2486 5.171476 CGGTTTGGCTTCGATATATCAGAT 58.829 41.667 13.11 0.00 0.00 2.90
2270 2487 4.556233 CGGTTTGGCTTCGATATATCAGA 58.444 43.478 13.11 8.08 0.00 3.27
2271 2488 3.679980 CCGGTTTGGCTTCGATATATCAG 59.320 47.826 13.11 4.82 0.00 2.90
2272 2489 3.070446 ACCGGTTTGGCTTCGATATATCA 59.930 43.478 13.11 0.00 43.94 2.15
2273 2490 3.660865 ACCGGTTTGGCTTCGATATATC 58.339 45.455 0.00 2.34 43.94 1.63
2274 2491 3.764237 ACCGGTTTGGCTTCGATATAT 57.236 42.857 0.00 0.00 43.94 0.86
2275 2492 3.550639 CGTACCGGTTTGGCTTCGATATA 60.551 47.826 15.04 0.00 43.94 0.86
2276 2493 2.800629 CGTACCGGTTTGGCTTCGATAT 60.801 50.000 15.04 0.00 43.94 1.63
2277 2494 1.469595 CGTACCGGTTTGGCTTCGATA 60.470 52.381 15.04 0.00 43.94 2.92
2278 2495 0.738412 CGTACCGGTTTGGCTTCGAT 60.738 55.000 15.04 0.00 43.94 3.59
2279 2496 1.373246 CGTACCGGTTTGGCTTCGA 60.373 57.895 15.04 0.00 43.94 3.71
2280 2497 0.945265 TTCGTACCGGTTTGGCTTCG 60.945 55.000 15.04 7.09 43.94 3.79
2281 2498 1.395954 GATTCGTACCGGTTTGGCTTC 59.604 52.381 15.04 0.00 43.94 3.86
2282 2499 1.002773 AGATTCGTACCGGTTTGGCTT 59.997 47.619 15.04 0.00 43.94 4.35
2283 2500 0.611714 AGATTCGTACCGGTTTGGCT 59.388 50.000 15.04 0.00 43.94 4.75
2284 2501 0.725117 CAGATTCGTACCGGTTTGGC 59.275 55.000 15.04 0.00 43.94 4.52
2285 2502 2.373540 TCAGATTCGTACCGGTTTGG 57.626 50.000 15.04 2.02 46.41 3.28
2286 2503 4.684703 GGATATCAGATTCGTACCGGTTTG 59.315 45.833 15.04 5.80 0.00 2.93
2287 2504 4.262335 GGGATATCAGATTCGTACCGGTTT 60.262 45.833 15.04 0.00 0.00 3.27
2288 2505 3.257624 GGGATATCAGATTCGTACCGGTT 59.742 47.826 15.04 0.00 0.00 4.44
2289 2506 2.824341 GGGATATCAGATTCGTACCGGT 59.176 50.000 13.98 13.98 0.00 5.28
2290 2507 2.823747 TGGGATATCAGATTCGTACCGG 59.176 50.000 0.00 0.00 0.00 5.28
2291 2508 4.720649 ATGGGATATCAGATTCGTACCG 57.279 45.455 4.83 0.00 0.00 4.02
2292 2509 7.444183 TCAAAAATGGGATATCAGATTCGTACC 59.556 37.037 4.83 0.00 0.00 3.34
2293 2510 8.378172 TCAAAAATGGGATATCAGATTCGTAC 57.622 34.615 4.83 0.00 0.00 3.67
2294 2511 8.972458 TTCAAAAATGGGATATCAGATTCGTA 57.028 30.769 4.83 0.00 0.00 3.43
2295 2512 7.469181 GCTTCAAAAATGGGATATCAGATTCGT 60.469 37.037 4.83 0.00 0.00 3.85
2296 2513 6.860023 GCTTCAAAAATGGGATATCAGATTCG 59.140 38.462 4.83 0.00 0.00 3.34
2297 2514 7.949434 AGCTTCAAAAATGGGATATCAGATTC 58.051 34.615 4.83 0.00 0.00 2.52
2298 2515 7.909485 AGCTTCAAAAATGGGATATCAGATT 57.091 32.000 4.83 0.00 0.00 2.40
2299 2516 7.201974 CCAAGCTTCAAAAATGGGATATCAGAT 60.202 37.037 4.83 0.00 0.00 2.90
2300 2517 6.097270 CCAAGCTTCAAAAATGGGATATCAGA 59.903 38.462 4.83 0.00 0.00 3.27
2301 2518 6.127253 ACCAAGCTTCAAAAATGGGATATCAG 60.127 38.462 4.83 0.00 35.44 2.90
2302 2519 5.721000 ACCAAGCTTCAAAAATGGGATATCA 59.279 36.000 4.83 0.00 35.44 2.15
2303 2520 6.225981 ACCAAGCTTCAAAAATGGGATATC 57.774 37.500 0.00 0.00 35.44 1.63
2304 2521 6.625532 AACCAAGCTTCAAAAATGGGATAT 57.374 33.333 0.00 0.00 35.44 1.63
2305 2522 6.432403 AAACCAAGCTTCAAAAATGGGATA 57.568 33.333 0.00 0.00 35.44 2.59
2306 2523 4.980339 AACCAAGCTTCAAAAATGGGAT 57.020 36.364 0.00 0.00 35.44 3.85
2307 2524 4.769345 AAACCAAGCTTCAAAAATGGGA 57.231 36.364 0.00 0.00 35.44 4.37
2308 2525 5.238432 GGTAAAACCAAGCTTCAAAAATGGG 59.762 40.000 0.00 0.00 38.42 4.00
2309 2526 6.299023 GGTAAAACCAAGCTTCAAAAATGG 57.701 37.500 0.00 0.00 38.42 3.16
2324 2541 4.647853 ACCAACTTCTTTCCTGGTAAAACC 59.352 41.667 0.00 0.00 40.42 3.27
2325 2542 5.358725 TCACCAACTTCTTTCCTGGTAAAAC 59.641 40.000 0.00 0.00 40.23 2.43
2345 2562 4.900635 TGCAAGAGAAAAAGAAGTCACC 57.099 40.909 0.00 0.00 0.00 4.02
2417 2843 6.558771 TCAACTGATCATTGTTACAGGTTG 57.441 37.500 10.71 10.71 35.08 3.77
2472 2898 1.227089 GGTGCTGATCGCGATGTCT 60.227 57.895 29.09 1.86 43.27 3.41
2511 2937 3.047718 CTCGAAGTAGTGCGCCGGA 62.048 63.158 5.05 0.00 0.00 5.14
2517 2943 0.741221 CCTTGGCCTCGAAGTAGTGC 60.741 60.000 3.32 0.00 0.00 4.40
2530 2956 2.954611 GCCTTTGTCGTCCTTGGC 59.045 61.111 0.00 0.00 0.00 4.52
2650 3080 2.860735 GCATGTGGTACGTGAGAGATTC 59.139 50.000 0.00 0.00 37.29 2.52
2653 3083 1.253100 TGCATGTGGTACGTGAGAGA 58.747 50.000 0.00 0.00 37.29 3.10
2654 3084 1.929169 CATGCATGTGGTACGTGAGAG 59.071 52.381 18.91 0.00 37.29 3.20
2774 3209 0.999406 CCATGAACTTGCCGTACTCG 59.001 55.000 0.00 0.00 0.00 4.18
2777 3212 0.802494 CCACCATGAACTTGCCGTAC 59.198 55.000 0.00 0.00 0.00 3.67
3023 3458 2.158959 GCAGTCGTCGATGGAACCG 61.159 63.158 4.48 0.00 0.00 4.44
3175 3610 1.166531 GGACAGGTGCTTTGCGAACT 61.167 55.000 0.00 0.00 0.00 3.01
3220 3655 4.186926 CAGCTGCTAGTTAATCTGAAGCA 58.813 43.478 0.00 0.18 40.68 3.91
3228 3663 0.179045 CCGGCCAGCTGCTAGTTAAT 60.179 55.000 8.66 0.00 40.92 1.40
3249 3687 0.716108 CAACAAAGTAGAGCGAGCCG 59.284 55.000 0.00 0.00 0.00 5.52
3250 3688 1.996191 CTCAACAAAGTAGAGCGAGCC 59.004 52.381 0.00 0.00 0.00 4.70
3251 3689 2.664085 GACTCAACAAAGTAGAGCGAGC 59.336 50.000 0.00 0.00 32.71 5.03
3252 3690 4.167554 AGACTCAACAAAGTAGAGCGAG 57.832 45.455 0.00 0.00 32.71 5.03
3263 3701 2.354510 CCAAACGAGCAAGACTCAACAA 59.645 45.455 0.00 0.00 46.63 2.83
3270 3708 1.197721 CATCCACCAAACGAGCAAGAC 59.802 52.381 0.00 0.00 0.00 3.01
3312 3750 9.719355 ACAAATATTACATCACTGTGTACAAGA 57.281 29.630 7.79 0.00 36.79 3.02
3315 3753 9.930693 TGTACAAATATTACATCACTGTGTACA 57.069 29.630 15.13 15.13 34.80 2.90
3318 3756 9.502091 AACTGTACAAATATTACATCACTGTGT 57.498 29.630 7.79 0.00 36.79 3.72
3353 3796 5.743636 ATTTTCCAAATGTGGCACAGTAT 57.256 34.783 26.04 11.73 45.54 2.12
3356 3799 5.389859 TCTATTTTCCAAATGTGGCACAG 57.610 39.130 26.04 12.21 45.54 3.66
3366 3809 7.730784 TGGAACACCCTTAATCTATTTTCCAAA 59.269 33.333 0.00 0.00 37.60 3.28
3463 3916 8.270799 CGTTAGTCGAATTTGTTAGACTTGAAA 58.729 33.333 8.76 0.00 42.99 2.69
3480 3933 3.865446 TGACTATGAGGTCGTTAGTCGA 58.135 45.455 11.99 0.00 46.83 4.20
3481 3934 4.815040 ATGACTATGAGGTCGTTAGTCG 57.185 45.455 11.99 0.00 39.80 4.18
3482 3935 6.293516 CCACTATGACTATGAGGTCGTTAGTC 60.294 46.154 10.71 10.71 36.52 2.59
3483 3936 5.531659 CCACTATGACTATGAGGTCGTTAGT 59.468 44.000 0.00 0.00 37.80 2.24
3484 3937 5.531659 ACCACTATGACTATGAGGTCGTTAG 59.468 44.000 0.00 0.00 38.91 2.34
3485 3938 5.298527 CACCACTATGACTATGAGGTCGTTA 59.701 44.000 0.00 0.00 38.91 3.18
3486 3939 4.098044 CACCACTATGACTATGAGGTCGTT 59.902 45.833 0.00 0.00 38.91 3.85
3487 3940 3.632604 CACCACTATGACTATGAGGTCGT 59.367 47.826 0.00 0.00 38.91 4.34
3488 3941 3.632604 ACACCACTATGACTATGAGGTCG 59.367 47.826 0.00 0.00 38.91 4.79
3492 3945 4.662468 AGCACACCACTATGACTATGAG 57.338 45.455 0.00 0.00 0.00 2.90
3493 3946 5.178061 CAAAGCACACCACTATGACTATGA 58.822 41.667 0.00 0.00 0.00 2.15
3494 3947 4.201851 GCAAAGCACACCACTATGACTATG 60.202 45.833 0.00 0.00 0.00 2.23
3495 3948 3.941483 GCAAAGCACACCACTATGACTAT 59.059 43.478 0.00 0.00 0.00 2.12
3496 3949 3.334691 GCAAAGCACACCACTATGACTA 58.665 45.455 0.00 0.00 0.00 2.59
3497 3950 2.154462 GCAAAGCACACCACTATGACT 58.846 47.619 0.00 0.00 0.00 3.41
3498 3951 1.200020 GGCAAAGCACACCACTATGAC 59.800 52.381 0.00 0.00 0.00 3.06
3506 3965 0.459489 TCTTGTTGGCAAAGCACACC 59.541 50.000 0.00 0.00 33.73 4.16
3597 4060 1.682451 ATGCTGCCCATGTGATTGGC 61.682 55.000 3.20 3.20 45.56 4.52
3710 4173 0.961857 ATGCACGCATTCCTCTGCAA 60.962 50.000 0.00 0.00 42.66 4.08
3721 4184 4.802999 TCATTTGTTTATCAATGCACGCA 58.197 34.783 0.00 0.00 35.84 5.24
3752 5158 6.887545 ACCGACATCATTTGTTTCCCTAAATA 59.112 34.615 0.00 0.00 39.18 1.40
3753 5159 5.714806 ACCGACATCATTTGTTTCCCTAAAT 59.285 36.000 0.00 0.00 39.18 1.40
3761 5174 6.385649 ACAACTAACCGACATCATTTGTTT 57.614 33.333 0.00 0.00 39.18 2.83
3775 5188 2.303175 TCAACTGGGCAACAACTAACC 58.697 47.619 0.00 0.00 39.74 2.85
3776 5189 3.380320 ACTTCAACTGGGCAACAACTAAC 59.620 43.478 0.00 0.00 39.74 2.34
3813 5226 2.710377 ACTTGATGCGCTTTGTCCATA 58.290 42.857 9.73 0.00 0.00 2.74
3838 5251 9.116067 TCCACAGGTTAATAAACATAGCATTAC 57.884 33.333 0.00 0.00 37.34 1.89
3844 5257 9.613428 TGAGATTCCACAGGTTAATAAACATAG 57.387 33.333 0.00 0.00 37.34 2.23
3853 5266 6.126863 AGACAATGAGATTCCACAGGTTAA 57.873 37.500 0.00 0.00 0.00 2.01
3854 5267 5.762179 AGACAATGAGATTCCACAGGTTA 57.238 39.130 0.00 0.00 0.00 2.85
3855 5268 4.647564 AGACAATGAGATTCCACAGGTT 57.352 40.909 0.00 0.00 0.00 3.50
3856 5269 4.330250 CAAGACAATGAGATTCCACAGGT 58.670 43.478 0.00 0.00 0.00 4.00
3857 5270 3.128242 GCAAGACAATGAGATTCCACAGG 59.872 47.826 0.00 0.00 0.00 4.00
3878 5291 1.207329 AGGATTACGGTCACCTTGAGC 59.793 52.381 0.00 0.00 41.16 4.26
3901 5314 3.181530 GCATGCATTATAGTTAGTCGCGG 60.182 47.826 14.21 0.00 0.00 6.46
4000 5413 9.888878 CATACCACTTCAAAGCAATCAATATAG 57.111 33.333 0.00 0.00 0.00 1.31
4006 5419 6.003326 TCTTCATACCACTTCAAAGCAATCA 58.997 36.000 0.00 0.00 0.00 2.57
4045 5480 7.936496 TTGTGTCTTCATATATCTTTGCCAA 57.064 32.000 0.00 0.00 0.00 4.52
4046 5481 7.774625 TCATTGTGTCTTCATATATCTTTGCCA 59.225 33.333 0.00 0.00 0.00 4.92
4047 5482 8.158169 TCATTGTGTCTTCATATATCTTTGCC 57.842 34.615 0.00 0.00 0.00 4.52
4048 5483 9.661187 CTTCATTGTGTCTTCATATATCTTTGC 57.339 33.333 0.00 0.00 0.00 3.68
4052 5487 9.254133 CGTTCTTCATTGTGTCTTCATATATCT 57.746 33.333 0.00 0.00 0.00 1.98
4053 5488 9.249457 TCGTTCTTCATTGTGTCTTCATATATC 57.751 33.333 0.00 0.00 0.00 1.63
4054 5489 9.599866 TTCGTTCTTCATTGTGTCTTCATATAT 57.400 29.630 0.00 0.00 0.00 0.86
4055 5490 8.869897 GTTCGTTCTTCATTGTGTCTTCATATA 58.130 33.333 0.00 0.00 0.00 0.86
4082 5517 2.033299 ACTCGGTGAAGCAATTGTGTTG 59.967 45.455 7.40 0.00 0.00 3.33
4098 5533 0.036010 AGAACATGCTTGGGACTCGG 60.036 55.000 4.44 0.00 0.00 4.63
4157 5593 8.606579 TTTTGGTCCAAATGCCCTAAAAAGGG 62.607 42.308 17.79 6.08 41.30 3.95
4158 5594 2.903135 TGGTCCAAATGCCCTAAAAAGG 59.097 45.455 0.00 0.00 0.00 3.11
4159 5595 4.615588 TTGGTCCAAATGCCCTAAAAAG 57.384 40.909 0.40 0.00 0.00 2.27
4160 5596 5.372373 CTTTTGGTCCAAATGCCCTAAAAA 58.628 37.500 17.79 0.00 33.19 1.94
4161 5597 4.745172 GCTTTTGGTCCAAATGCCCTAAAA 60.745 41.667 31.22 10.54 43.75 1.52
4162 5598 3.244387 GCTTTTGGTCCAAATGCCCTAAA 60.244 43.478 31.22 11.14 43.75 1.85
4191 5627 5.527385 AGGGATATGACATATGCTAGAGCT 58.473 41.667 21.84 10.56 42.66 4.09
4192 5628 5.867903 AGGGATATGACATATGCTAGAGC 57.132 43.478 21.84 8.79 42.50 4.09
4194 5630 9.539194 CCATATAGGGATATGACATATGCTAGA 57.461 37.037 21.84 12.34 45.46 2.43
4195 5631 8.256605 GCCATATAGGGATATGACATATGCTAG 58.743 40.741 21.84 9.15 45.46 3.42
4196 5632 7.093771 CGCCATATAGGGATATGACATATGCTA 60.094 40.741 21.84 14.21 45.46 3.49
4197 5633 6.295518 CGCCATATAGGGATATGACATATGCT 60.296 42.308 21.84 12.87 45.46 3.79
4198 5634 5.871524 CGCCATATAGGGATATGACATATGC 59.128 44.000 16.40 16.40 45.46 3.14
4199 5635 7.232118 TCGCCATATAGGGATATGACATATG 57.768 40.000 12.74 0.00 45.46 1.78
4200 5636 7.580302 GCATCGCCATATAGGGATATGACATAT 60.580 40.741 17.64 7.70 45.46 1.78
4201 5637 6.295292 GCATCGCCATATAGGGATATGACATA 60.295 42.308 17.64 0.00 45.46 2.29
4202 5638 5.512060 GCATCGCCATATAGGGATATGACAT 60.512 44.000 17.64 0.00 45.46 3.06
4203 5639 4.202253 GCATCGCCATATAGGGATATGACA 60.202 45.833 17.64 0.00 45.46 3.58
4204 5640 4.202253 TGCATCGCCATATAGGGATATGAC 60.202 45.833 17.64 11.41 45.46 3.06
4205 5641 3.966665 TGCATCGCCATATAGGGATATGA 59.033 43.478 17.64 6.59 45.46 2.15
4206 5642 4.341366 TGCATCGCCATATAGGGATATG 57.659 45.455 7.83 10.38 43.20 1.78
4207 5643 5.573380 ATTGCATCGCCATATAGGGATAT 57.427 39.130 7.83 0.00 38.09 1.63
4208 5644 5.372343 AATTGCATCGCCATATAGGGATA 57.628 39.130 7.83 0.00 38.09 2.59
4209 5645 3.939740 ATTGCATCGCCATATAGGGAT 57.060 42.857 7.83 0.00 38.09 3.85
4210 5646 3.719268 AATTGCATCGCCATATAGGGA 57.281 42.857 7.83 0.00 38.09 4.20
4211 5647 4.789012 AAAATTGCATCGCCATATAGGG 57.211 40.909 0.00 0.00 38.09 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.