Multiple sequence alignment - TraesCS2A01G158800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G158800 chr2A 100.000 2270 0 0 1 2270 105540272 105542541 0.000000e+00 4193
1 TraesCS2A01G158800 chr2A 86.528 386 33 8 976 1357 105531781 105532151 7.550000e-110 407
2 TraesCS2A01G158800 chr2A 83.047 466 58 11 316 761 105531049 105531513 9.770000e-109 403
3 TraesCS2A01G158800 chr2A 84.474 380 49 5 976 1355 105522775 105523144 1.280000e-97 366
4 TraesCS2A01G158800 chr2D 93.962 1209 40 12 764 1968 109901807 109902986 0.000000e+00 1797
5 TraesCS2A01G158800 chr2D 94.792 672 33 2 88 758 109901098 109901768 0.000000e+00 1046
6 TraesCS2A01G158800 chr2D 82.632 737 60 26 88 821 109792612 109793283 6.980000e-165 590
7 TraesCS2A01G158800 chr2D 88.498 426 37 6 987 1410 109793373 109793788 2.600000e-139 505
8 TraesCS2A01G158800 chr2D 94.872 312 13 3 1958 2268 109903026 109903335 3.390000e-133 484
9 TraesCS2A01G158800 chr2D 86.563 387 35 10 976 1356 109737588 109737963 5.840000e-111 411
10 TraesCS2A01G158800 chr2D 82.429 387 54 10 1424 1796 109796122 109796508 2.170000e-85 326
11 TraesCS2A01G158800 chr2D 88.166 169 16 3 405 570 109736928 109737095 4.950000e-47 198
12 TraesCS2A01G158800 chr2B 94.058 1077 38 8 904 1968 159318981 159320043 0.000000e+00 1611
13 TraesCS2A01G158800 chr2B 89.793 725 57 8 47 755 159318014 159318737 0.000000e+00 913
14 TraesCS2A01G158800 chr2B 93.949 314 16 3 1958 2268 159320083 159320396 2.640000e-129 472
15 TraesCS2A01G158800 chr2B 87.535 361 37 7 405 759 159299470 159299828 5.840000e-111 411
16 TraesCS2A01G158800 chr2B 84.864 403 45 10 976 1373 159300158 159300549 2.110000e-105 392
17 TraesCS2A01G158800 chr2B 95.139 144 7 0 764 907 159318780 159318923 6.310000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G158800 chr2A 105540272 105542541 2269 False 4193.000000 4193 100.000000 1 2270 1 chr2A.!!$F2 2269
1 TraesCS2A01G158800 chr2A 105531049 105532151 1102 False 405.000000 407 84.787500 316 1357 2 chr2A.!!$F3 1041
2 TraesCS2A01G158800 chr2D 109901098 109903335 2237 False 1109.000000 1797 94.542000 88 2268 3 chr2D.!!$F3 2180
3 TraesCS2A01G158800 chr2D 109792612 109796508 3896 False 473.666667 590 84.519667 88 1796 3 chr2D.!!$F2 1708
4 TraesCS2A01G158800 chr2D 109736928 109737963 1035 False 304.500000 411 87.364500 405 1356 2 chr2D.!!$F1 951
5 TraesCS2A01G158800 chr2B 159318014 159320396 2382 False 806.000000 1611 93.234750 47 2268 4 chr2B.!!$F2 2221
6 TraesCS2A01G158800 chr2B 159299470 159300549 1079 False 401.500000 411 86.199500 405 1373 2 chr2B.!!$F1 968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.104304 AAGAAGACGTCGTGGCTGTT 59.896 50.0 9.23 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 4548 0.252513 TGGATTGGTCGGGAGGAAGA 60.253 55.0 0.0 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.259952 TCAGATCTCGTCGCCCAT 57.740 55.556 0.00 0.00 0.00 4.00
18 19 3.414486 TCAGATCTCGTCGCCCATA 57.586 52.632 0.00 0.00 0.00 2.74
19 20 0.952280 TCAGATCTCGTCGCCCATAC 59.048 55.000 0.00 0.00 0.00 2.39
20 21 0.955178 CAGATCTCGTCGCCCATACT 59.045 55.000 0.00 0.00 0.00 2.12
21 22 0.955178 AGATCTCGTCGCCCATACTG 59.045 55.000 0.00 0.00 0.00 2.74
22 23 0.952280 GATCTCGTCGCCCATACTGA 59.048 55.000 0.00 0.00 0.00 3.41
23 24 1.542030 GATCTCGTCGCCCATACTGAT 59.458 52.381 0.00 0.00 0.00 2.90
24 25 0.952280 TCTCGTCGCCCATACTGATC 59.048 55.000 0.00 0.00 0.00 2.92
25 26 0.668535 CTCGTCGCCCATACTGATCA 59.331 55.000 0.00 0.00 0.00 2.92
26 27 1.067060 CTCGTCGCCCATACTGATCAA 59.933 52.381 0.00 0.00 0.00 2.57
27 28 1.067060 TCGTCGCCCATACTGATCAAG 59.933 52.381 0.00 0.00 0.00 3.02
28 29 1.067060 CGTCGCCCATACTGATCAAGA 59.933 52.381 0.00 0.00 0.00 3.02
29 30 2.481276 CGTCGCCCATACTGATCAAGAA 60.481 50.000 0.00 0.00 0.00 2.52
30 31 3.126831 GTCGCCCATACTGATCAAGAAG 58.873 50.000 0.00 0.00 0.00 2.85
31 32 3.031013 TCGCCCATACTGATCAAGAAGA 58.969 45.455 0.00 0.00 0.00 2.87
32 33 3.126831 CGCCCATACTGATCAAGAAGAC 58.873 50.000 0.00 0.00 0.00 3.01
33 34 3.126831 GCCCATACTGATCAAGAAGACG 58.873 50.000 0.00 0.00 0.00 4.18
34 35 3.430929 GCCCATACTGATCAAGAAGACGT 60.431 47.826 0.00 0.00 0.00 4.34
35 36 4.363999 CCCATACTGATCAAGAAGACGTC 58.636 47.826 7.70 7.70 0.00 4.34
36 37 4.038361 CCATACTGATCAAGAAGACGTCG 58.962 47.826 10.46 0.00 0.00 5.12
37 38 4.438880 CCATACTGATCAAGAAGACGTCGT 60.439 45.833 10.46 6.85 0.00 4.34
38 39 2.935042 ACTGATCAAGAAGACGTCGTG 58.065 47.619 9.23 6.97 37.10 4.35
39 40 2.254459 CTGATCAAGAAGACGTCGTGG 58.746 52.381 9.23 0.00 36.48 4.94
40 41 0.992802 GATCAAGAAGACGTCGTGGC 59.007 55.000 9.23 0.13 36.48 5.01
41 42 0.603569 ATCAAGAAGACGTCGTGGCT 59.396 50.000 9.23 2.68 36.48 4.75
42 43 0.318699 TCAAGAAGACGTCGTGGCTG 60.319 55.000 9.23 5.12 36.48 4.85
43 44 0.597637 CAAGAAGACGTCGTGGCTGT 60.598 55.000 9.23 0.00 32.59 4.40
44 45 0.104304 AAGAAGACGTCGTGGCTGTT 59.896 50.000 9.23 0.00 0.00 3.16
45 46 0.597637 AGAAGACGTCGTGGCTGTTG 60.598 55.000 9.23 0.00 0.00 3.33
48 49 2.280797 ACGTCGTGGCTGTTGCAT 60.281 55.556 0.00 0.00 41.91 3.96
76 77 0.865111 TTGTTGAGATGTCGTTGGCG 59.135 50.000 0.00 0.00 39.92 5.69
101 102 6.777213 AGATTGGTCGAAGTAGACAACTAT 57.223 37.500 0.00 0.00 42.62 2.12
109 110 6.538021 GTCGAAGTAGACAACTATGGAGTAGA 59.462 42.308 0.00 0.00 37.50 2.59
169 170 3.452755 TGTCGCCATCACGATCTAAAT 57.547 42.857 0.00 0.00 45.06 1.40
202 203 6.636562 TTTCAATTCCTAAACTTAACGGCA 57.363 33.333 0.00 0.00 0.00 5.69
265 266 3.932710 CTCGACCAGATTTCGGATTTTGA 59.067 43.478 0.00 0.00 37.09 2.69
347 352 3.994317 TCTCCTCATACCCATCACTTGA 58.006 45.455 0.00 0.00 0.00 3.02
362 375 2.350804 CACTTGATCGTTGCATCCTCTG 59.649 50.000 0.00 0.00 0.00 3.35
494 507 5.473039 GCCTGAAAAGTTGACAATAGCAAT 58.527 37.500 0.00 0.00 0.00 3.56
541 558 3.044305 GCGGTGAGAAGCTTGCGT 61.044 61.111 2.10 0.00 0.00 5.24
675 794 6.988580 TCAAATCACATAGAAGTGCATAGAGG 59.011 38.462 0.00 0.00 39.35 3.69
736 858 7.018826 CGAGAAGATCCGTGTTCTATCTATTC 58.981 42.308 0.00 0.00 38.01 1.75
761 883 5.746284 TCCGGTTTACCATATCATTTGTCA 58.254 37.500 0.00 0.00 35.14 3.58
762 884 6.361433 TCCGGTTTACCATATCATTTGTCAT 58.639 36.000 0.00 0.00 35.14 3.06
798 954 2.396590 AATTTGTCGCCCGTACTCAT 57.603 45.000 0.00 0.00 0.00 2.90
1055 1380 3.073678 GTTTGCCCAATTTCATTCCCAC 58.926 45.455 0.00 0.00 0.00 4.61
1079 1404 4.465512 CAAGCCATGCGACGGTGC 62.466 66.667 0.00 0.00 0.00 5.01
1083 1408 3.133464 CCATGCGACGGTGCCAAT 61.133 61.111 0.00 0.00 0.00 3.16
1084 1409 2.404789 CATGCGACGGTGCCAATC 59.595 61.111 0.00 0.00 0.00 2.67
1414 1745 4.319766 GCGGAAATGTATCATGTGTGGATC 60.320 45.833 0.00 0.00 0.00 3.36
1560 4222 6.790825 GCAGAGTCACATCTTAACGTTTTAAC 59.209 38.462 5.91 0.00 0.00 2.01
1694 4376 3.278574 CCTATCGGTGCTTTGAAATCCA 58.721 45.455 0.00 0.00 0.00 3.41
1717 4399 2.334977 TGTAACGGGGCTCATCCATAT 58.665 47.619 0.00 0.00 36.21 1.78
1718 4400 2.038426 TGTAACGGGGCTCATCCATATG 59.962 50.000 0.00 0.00 36.21 1.78
1719 4401 1.140312 AACGGGGCTCATCCATATGT 58.860 50.000 1.24 0.00 36.21 2.29
1720 4402 2.024176 ACGGGGCTCATCCATATGTA 57.976 50.000 1.24 0.00 36.21 2.29
1721 4403 2.551270 ACGGGGCTCATCCATATGTAT 58.449 47.619 1.24 0.00 36.21 2.29
1722 4404 3.719871 ACGGGGCTCATCCATATGTATA 58.280 45.455 1.24 0.00 36.21 1.47
1723 4405 4.101114 ACGGGGCTCATCCATATGTATAA 58.899 43.478 1.24 0.00 36.21 0.98
1724 4406 4.162320 ACGGGGCTCATCCATATGTATAAG 59.838 45.833 1.24 0.00 36.21 1.73
1751 4433 1.727511 CCATGTATTGTGGCAGCCCG 61.728 60.000 9.64 0.00 0.00 6.13
1753 4435 0.544223 ATGTATTGTGGCAGCCCGTA 59.456 50.000 9.64 0.00 0.00 4.02
1788 4471 7.611467 TCTCCATTATAGTCAAACAAATGTGCT 59.389 33.333 0.00 0.00 0.00 4.40
1840 4523 2.293677 ACTTCTGTCAGTGGAGTGTACG 59.706 50.000 0.00 0.00 0.00 3.67
1865 4548 2.680221 GCATGCAACATGTCTCCTCTCT 60.680 50.000 14.21 0.00 0.00 3.10
1877 4560 0.256464 TCCTCTCTCTTCCTCCCGAC 59.744 60.000 0.00 0.00 0.00 4.79
1923 4606 8.159344 AGCTTATAATTTTAGATGGTCACTGC 57.841 34.615 0.00 0.00 0.00 4.40
2230 4965 9.603921 AAATGATTTTCTGTTGTTGAGTGAAAT 57.396 25.926 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.952280 GTATGGGCGACGAGATCTGA 59.048 55.000 0.00 0.00 0.00 3.27
1 2 0.955178 AGTATGGGCGACGAGATCTG 59.045 55.000 0.00 0.00 0.00 2.90
2 3 0.955178 CAGTATGGGCGACGAGATCT 59.045 55.000 0.00 0.00 0.00 2.75
3 4 0.952280 TCAGTATGGGCGACGAGATC 59.048 55.000 0.00 0.00 36.16 2.75
4 5 1.542030 GATCAGTATGGGCGACGAGAT 59.458 52.381 0.00 0.00 36.16 2.75
5 6 0.952280 GATCAGTATGGGCGACGAGA 59.048 55.000 0.00 0.00 36.16 4.04
6 7 0.668535 TGATCAGTATGGGCGACGAG 59.331 55.000 0.00 0.00 36.16 4.18
7 8 1.067060 CTTGATCAGTATGGGCGACGA 59.933 52.381 0.00 0.00 36.16 4.20
8 9 1.067060 TCTTGATCAGTATGGGCGACG 59.933 52.381 0.00 0.00 36.16 5.12
9 10 2.890808 TCTTGATCAGTATGGGCGAC 57.109 50.000 0.00 0.00 36.16 5.19
10 11 3.031013 TCTTCTTGATCAGTATGGGCGA 58.969 45.455 0.00 0.00 36.16 5.54
11 12 3.126831 GTCTTCTTGATCAGTATGGGCG 58.873 50.000 0.00 0.00 36.16 6.13
12 13 3.126831 CGTCTTCTTGATCAGTATGGGC 58.873 50.000 0.00 0.00 36.16 5.36
13 14 4.363999 GACGTCTTCTTGATCAGTATGGG 58.636 47.826 8.70 0.00 36.16 4.00
14 15 4.038361 CGACGTCTTCTTGATCAGTATGG 58.962 47.826 14.70 0.00 36.16 2.74
15 16 4.497251 CACGACGTCTTCTTGATCAGTATG 59.503 45.833 14.70 0.00 37.54 2.39
16 17 4.438880 CCACGACGTCTTCTTGATCAGTAT 60.439 45.833 14.70 0.00 0.00 2.12
17 18 3.119955 CCACGACGTCTTCTTGATCAGTA 60.120 47.826 14.70 0.00 0.00 2.74
18 19 2.351835 CCACGACGTCTTCTTGATCAGT 60.352 50.000 14.70 0.00 0.00 3.41
19 20 2.254459 CCACGACGTCTTCTTGATCAG 58.746 52.381 14.70 0.00 0.00 2.90
20 21 1.668919 GCCACGACGTCTTCTTGATCA 60.669 52.381 14.70 0.00 0.00 2.92
21 22 0.992802 GCCACGACGTCTTCTTGATC 59.007 55.000 14.70 0.00 0.00 2.92
22 23 0.603569 AGCCACGACGTCTTCTTGAT 59.396 50.000 14.70 0.00 0.00 2.57
23 24 0.318699 CAGCCACGACGTCTTCTTGA 60.319 55.000 14.70 0.00 0.00 3.02
24 25 0.597637 ACAGCCACGACGTCTTCTTG 60.598 55.000 14.70 8.02 0.00 3.02
25 26 0.104304 AACAGCCACGACGTCTTCTT 59.896 50.000 14.70 0.00 0.00 2.52
26 27 0.597637 CAACAGCCACGACGTCTTCT 60.598 55.000 14.70 2.11 0.00 2.85
27 28 1.853319 CAACAGCCACGACGTCTTC 59.147 57.895 14.70 0.00 0.00 2.87
28 29 2.244651 GCAACAGCCACGACGTCTT 61.245 57.895 14.70 0.03 0.00 3.01
29 30 2.661866 GCAACAGCCACGACGTCT 60.662 61.111 14.70 0.00 0.00 4.18
30 31 1.011968 TATGCAACAGCCACGACGTC 61.012 55.000 5.18 5.18 0.00 4.34
31 32 0.601576 TTATGCAACAGCCACGACGT 60.602 50.000 0.00 0.00 0.00 4.34
32 33 0.095245 CTTATGCAACAGCCACGACG 59.905 55.000 0.00 0.00 0.00 5.12
33 34 1.135972 CACTTATGCAACAGCCACGAC 60.136 52.381 0.00 0.00 0.00 4.34
34 35 1.155889 CACTTATGCAACAGCCACGA 58.844 50.000 0.00 0.00 0.00 4.35
35 36 1.155889 TCACTTATGCAACAGCCACG 58.844 50.000 0.00 0.00 0.00 4.94
36 37 2.489329 ACATCACTTATGCAACAGCCAC 59.511 45.455 0.00 0.00 39.39 5.01
37 38 2.794103 ACATCACTTATGCAACAGCCA 58.206 42.857 0.00 0.00 39.39 4.75
38 39 3.057315 ACAACATCACTTATGCAACAGCC 60.057 43.478 0.00 0.00 39.39 4.85
39 40 4.164822 ACAACATCACTTATGCAACAGC 57.835 40.909 0.00 0.00 39.39 4.40
40 41 5.761003 TCAACAACATCACTTATGCAACAG 58.239 37.500 0.00 0.00 39.39 3.16
41 42 5.530543 TCTCAACAACATCACTTATGCAACA 59.469 36.000 0.00 0.00 39.39 3.33
42 43 6.000891 TCTCAACAACATCACTTATGCAAC 57.999 37.500 0.00 0.00 39.39 4.17
43 44 6.207221 ACATCTCAACAACATCACTTATGCAA 59.793 34.615 0.00 0.00 39.39 4.08
44 45 5.706833 ACATCTCAACAACATCACTTATGCA 59.293 36.000 0.00 0.00 39.39 3.96
45 46 6.187125 ACATCTCAACAACATCACTTATGC 57.813 37.500 0.00 0.00 39.39 3.14
48 49 5.538118 ACGACATCTCAACAACATCACTTA 58.462 37.500 0.00 0.00 0.00 2.24
76 77 5.471257 AGTTGTCTACTTCGACCAATCTTC 58.529 41.667 0.00 0.00 31.29 2.87
81 82 4.768448 TCCATAGTTGTCTACTTCGACCAA 59.232 41.667 0.00 0.00 38.33 3.67
101 102 2.970639 GCCACGCACTCTACTCCA 59.029 61.111 0.00 0.00 0.00 3.86
138 139 2.202756 GGCGACATGAGACCGTCC 60.203 66.667 0.00 0.38 0.00 4.79
185 186 6.459985 GGTTTCTTTGCCGTTAAGTTTAGGAA 60.460 38.462 0.00 0.00 0.00 3.36
229 230 1.004560 TCGAGGAGTGCAGCTTTGG 60.005 57.895 0.00 0.00 0.00 3.28
265 266 4.500127 TGACATGTTCGTGAATAATCCGT 58.500 39.130 0.00 0.00 0.00 4.69
347 352 5.862845 AGATATTTCAGAGGATGCAACGAT 58.137 37.500 0.00 0.00 0.00 3.73
494 507 2.931512 TCACGTGCATGTTCGAGATA 57.068 45.000 11.67 0.00 0.00 1.98
541 558 3.321111 AGAGAGTTTCAAAGCCGTGTCTA 59.679 43.478 0.00 0.00 0.00 2.59
580 692 3.365969 GCGGCCATGTATTTATAGGCAAC 60.366 47.826 2.24 0.00 46.96 4.17
762 884 8.122330 GCGACAAATTTCATAGACAATGATACA 58.878 33.333 0.00 0.00 44.13 2.29
798 954 3.650281 TCATTTTGCTAGAGATGCCCA 57.350 42.857 0.00 0.00 0.00 5.36
934 1242 4.164843 TGGTCACAACTTTTAGCCTCTT 57.835 40.909 0.00 0.00 0.00 2.85
935 1243 3.857157 TGGTCACAACTTTTAGCCTCT 57.143 42.857 0.00 0.00 0.00 3.69
936 1244 3.253432 CCTTGGTCACAACTTTTAGCCTC 59.747 47.826 0.00 0.00 32.14 4.70
938 1246 2.288213 GCCTTGGTCACAACTTTTAGCC 60.288 50.000 0.00 0.00 32.14 3.93
939 1247 2.623416 AGCCTTGGTCACAACTTTTAGC 59.377 45.455 0.00 0.00 32.14 3.09
940 1248 6.385649 TTTAGCCTTGGTCACAACTTTTAG 57.614 37.500 0.00 0.00 32.14 1.85
941 1249 6.378848 ACTTTTAGCCTTGGTCACAACTTTTA 59.621 34.615 0.00 0.00 32.14 1.52
942 1250 5.186992 ACTTTTAGCCTTGGTCACAACTTTT 59.813 36.000 0.00 0.00 32.14 2.27
943 1251 4.709886 ACTTTTAGCCTTGGTCACAACTTT 59.290 37.500 0.00 0.00 32.14 2.66
944 1252 4.278310 ACTTTTAGCCTTGGTCACAACTT 58.722 39.130 0.00 0.00 32.14 2.66
1048 1373 0.685458 GGCTTGCTCATGGTGGGAAT 60.685 55.000 0.00 0.00 0.00 3.01
1051 1376 1.380785 ATGGCTTGCTCATGGTGGG 60.381 57.895 0.00 0.00 0.00 4.61
1079 1404 0.392998 CCACTCCGTCTTGGGATTGG 60.393 60.000 3.93 3.93 46.50 3.16
1080 1405 1.026718 GCCACTCCGTCTTGGGATTG 61.027 60.000 0.00 0.00 36.72 2.67
1081 1406 1.299976 GCCACTCCGTCTTGGGATT 59.700 57.895 0.00 0.00 38.76 3.01
1082 1407 2.670148 GGCCACTCCGTCTTGGGAT 61.670 63.158 0.00 0.00 38.76 3.85
1083 1408 3.319198 GGCCACTCCGTCTTGGGA 61.319 66.667 0.00 0.00 38.76 4.37
1084 1409 3.322466 AGGCCACTCCGTCTTGGG 61.322 66.667 5.01 0.00 40.77 4.12
1288 1616 3.172339 TGCATGGGCTTTTATTCCAGTT 58.828 40.909 0.00 0.00 41.91 3.16
1390 1721 2.682352 CCACACATGATACATTTCCGCA 59.318 45.455 0.00 0.00 0.00 5.69
1560 4222 3.028850 AGGATCATGCCAATTTCAGTGG 58.971 45.455 0.00 0.00 39.33 4.00
1694 4376 2.334977 TGGATGAGCCCCGTTACATAT 58.665 47.619 0.00 0.00 34.97 1.78
1719 4401 9.496873 GCCACAATACATGGTTATACACTTATA 57.503 33.333 0.00 0.00 39.63 0.98
1720 4402 7.996066 TGCCACAATACATGGTTATACACTTAT 59.004 33.333 0.00 0.00 39.63 1.73
1721 4403 7.339482 TGCCACAATACATGGTTATACACTTA 58.661 34.615 0.00 0.00 39.63 2.24
1722 4404 6.184068 TGCCACAATACATGGTTATACACTT 58.816 36.000 0.00 0.00 39.63 3.16
1723 4405 5.750524 TGCCACAATACATGGTTATACACT 58.249 37.500 0.00 0.00 39.63 3.55
1724 4406 5.505654 GCTGCCACAATACATGGTTATACAC 60.506 44.000 0.00 0.00 39.63 2.90
1788 4471 1.622811 GTTGACATGGCCCCATTCAAA 59.377 47.619 18.05 4.72 36.38 2.69
1865 4548 0.252513 TGGATTGGTCGGGAGGAAGA 60.253 55.000 0.00 0.00 0.00 2.87
2013 4746 7.504924 TTGAACTAAGTGAAATCGGTGAAAT 57.495 32.000 0.00 0.00 0.00 2.17
2019 4752 6.725246 AGTGTTTTGAACTAAGTGAAATCGG 58.275 36.000 0.00 0.00 0.00 4.18
2129 4864 7.873719 TTTCAAGAACTGGTTCACTCATTTA 57.126 32.000 14.67 0.00 41.84 1.40
2193 4928 8.895845 CAACAGAAAATCATTTCACTCGTTTAG 58.104 33.333 4.34 0.00 46.03 1.85
2198 4933 6.912051 TCAACAACAGAAAATCATTTCACTCG 59.088 34.615 4.34 0.00 46.03 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.