Multiple sequence alignment - TraesCS2A01G157700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G157700 chr2A 100.000 4124 0 0 1 4124 104786425 104790548 0.000000e+00 7616.0
1 TraesCS2A01G157700 chr2A 96.309 298 11 0 3827 4124 104809108 104809405 1.330000e-134 490.0
2 TraesCS2A01G157700 chr2A 95.652 69 3 0 4049 4117 104809412 104809480 1.210000e-20 111.0
3 TraesCS2A01G157700 chr2A 97.619 42 1 0 2611 2652 48254928 48254887 5.720000e-09 73.1
4 TraesCS2A01G157700 chr2D 90.252 2544 173 32 590 3087 108769552 108772066 0.000000e+00 3254.0
5 TraesCS2A01G157700 chr2D 93.377 770 35 11 3176 3935 108772186 108772949 0.000000e+00 1125.0
6 TraesCS2A01G157700 chr2D 92.727 55 3 1 2599 2653 19647995 19648048 1.230000e-10 78.7
7 TraesCS2A01G157700 chr2D 93.617 47 3 0 2603 2649 544884993 544885039 2.060000e-08 71.3
8 TraesCS2A01G157700 chr2B 92.006 2039 121 23 590 2624 158430697 158432697 0.000000e+00 2824.0
9 TraesCS2A01G157700 chr2B 81.942 958 94 46 2660 3558 158432693 158433630 0.000000e+00 737.0
10 TraesCS2A01G157700 chr2B 84.861 469 45 13 3598 4064 158433637 158434081 2.260000e-122 449.0
11 TraesCS2A01G157700 chr2B 85.121 289 31 7 1 283 158429643 158429925 6.750000e-73 285.0
12 TraesCS2A01G157700 chr2B 84.512 297 26 11 3769 4064 158435966 158436243 4.060000e-70 276.0
13 TraesCS2A01G157700 chr2B 84.772 197 18 7 3868 4064 158435657 158435841 1.960000e-43 187.0
14 TraesCS2A01G157700 chr2B 87.129 101 13 0 1587 1687 460038287 460038187 9.370000e-22 115.0
15 TraesCS2A01G157700 chr5B 87.211 1298 130 24 824 2110 396432022 396433294 0.000000e+00 1445.0
16 TraesCS2A01G157700 chr5B 87.859 453 51 4 2143 2593 396433296 396433746 2.820000e-146 529.0
17 TraesCS2A01G157700 chr5B 81.698 530 47 23 2655 3138 396433749 396434274 2.990000e-106 396.0
18 TraesCS2A01G157700 chr5B 93.478 46 3 0 3175 3220 396434287 396434332 7.400000e-08 69.4
19 TraesCS2A01G157700 chr5A 86.556 1205 132 16 921 2111 438823236 438824424 0.000000e+00 1301.0
20 TraesCS2A01G157700 chr5A 85.618 445 42 9 2135 2576 438824417 438824842 8.130000e-122 448.0
21 TraesCS2A01G157700 chr5A 83.682 239 25 6 2724 2949 438842339 438842576 3.230000e-51 213.0
22 TraesCS2A01G157700 chr5A 78.800 250 22 23 2995 3239 438843709 438843932 5.560000e-29 139.0
23 TraesCS2A01G157700 chr5D 85.668 621 57 13 817 1428 337681046 337681643 3.500000e-175 625.0
24 TraesCS2A01G157700 chr5D 84.041 589 65 7 1525 2111 337681690 337682251 1.300000e-149 540.0
25 TraesCS2A01G157700 chr5D 86.726 452 53 4 2143 2593 337682254 337682699 2.860000e-136 496.0
26 TraesCS2A01G157700 chr5D 82.627 472 50 17 2655 3097 337682702 337683170 5.000000e-104 388.0
27 TraesCS2A01G157700 chrUn 96.154 52 1 1 2602 2653 87081592 87081542 2.640000e-12 84.2
28 TraesCS2A01G157700 chr7D 94.231 52 2 1 2602 2653 598267902 598267852 1.230000e-10 78.7
29 TraesCS2A01G157700 chr4B 94.118 51 2 1 2602 2652 53590604 53590653 4.420000e-10 76.8
30 TraesCS2A01G157700 chr1B 95.745 47 2 0 2615 2661 49887002 49886956 4.420000e-10 76.8
31 TraesCS2A01G157700 chr4D 94.000 50 2 1 2612 2661 139044983 139044935 1.590000e-09 75.0
32 TraesCS2A01G157700 chr6A 89.655 58 5 1 2602 2659 69358332 69358276 5.720000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G157700 chr2A 104786425 104790548 4123 False 7616.00 7616 100.000000 1 4124 1 chr2A.!!$F1 4123
1 TraesCS2A01G157700 chr2D 108769552 108772949 3397 False 2189.50 3254 91.814500 590 3935 2 chr2D.!!$F3 3345
2 TraesCS2A01G157700 chr2B 158429643 158436243 6600 False 793.00 2824 85.535667 1 4064 6 chr2B.!!$F1 4063
3 TraesCS2A01G157700 chr5B 396432022 396434332 2310 False 609.85 1445 87.561500 824 3220 4 chr5B.!!$F1 2396
4 TraesCS2A01G157700 chr5A 438823236 438824842 1606 False 874.50 1301 86.087000 921 2576 2 chr5A.!!$F1 1655
5 TraesCS2A01G157700 chr5D 337681046 337683170 2124 False 512.25 625 84.765500 817 3097 4 chr5D.!!$F1 2280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 928 0.038709 TTGCAAAAATCCCTTCCGCG 60.039 50.0 0.0 0.0 0.00 6.46 F
1424 1941 0.181350 GGGATGTCCGAGAAGGCATT 59.819 55.0 0.0 0.0 40.77 3.56 F
2757 3336 0.166814 GCATCTCGTTTGCCAGACAC 59.833 55.0 0.0 0.0 33.95 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 2018 0.319900 AGGCTAGTCACTTGCGTGTG 60.320 55.0 5.61 2.9 41.89 3.82 R
3042 3655 0.035056 GAGCTTGCTTCCTGGGCTTA 60.035 55.0 0.00 0.0 33.13 3.09 R
3797 4467 0.101040 GCAAATATCTTGGCAGCGCA 59.899 50.0 11.47 0.0 31.06 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.597568 TACCACCACGATTCGACGTT 59.402 50.000 13.95 0.00 44.76 3.99
37 38 0.942410 ACCACCACGATTCGACGTTG 60.942 55.000 13.95 0.00 44.76 4.10
49 50 1.935199 TCGACGTTGTTGAAACCCTTC 59.065 47.619 1.96 0.00 0.00 3.46
68 69 3.712016 TCCACGAGGATGGATCAAAAA 57.288 42.857 0.00 0.00 44.14 1.94
69 70 3.343617 TCCACGAGGATGGATCAAAAAC 58.656 45.455 0.00 0.00 44.14 2.43
70 71 2.423538 CCACGAGGATGGATCAAAAACC 59.576 50.000 0.00 0.00 43.02 3.27
71 72 3.081061 CACGAGGATGGATCAAAAACCA 58.919 45.455 0.00 0.00 40.57 3.67
72 73 3.505680 CACGAGGATGGATCAAAAACCAA 59.494 43.478 0.00 0.00 39.69 3.67
75 76 3.444029 AGGATGGATCAAAAACCAAGGG 58.556 45.455 0.00 0.00 39.69 3.95
78 79 2.888212 TGGATCAAAAACCAAGGGGAG 58.112 47.619 0.00 0.00 38.05 4.30
80 81 2.225267 GGATCAAAAACCAAGGGGAGGA 60.225 50.000 0.00 0.00 38.05 3.71
84 86 0.404346 AAAACCAAGGGGAGGAGGGA 60.404 55.000 0.00 0.00 38.05 4.20
87 89 2.367512 CAAGGGGAGGAGGGAGGG 60.368 72.222 0.00 0.00 0.00 4.30
98 100 1.299939 GAGGGAGGGGGTCAATCTTT 58.700 55.000 0.00 0.00 0.00 2.52
102 104 3.864770 AGGGAGGGGGTCAATCTTTAATT 59.135 43.478 0.00 0.00 0.00 1.40
104 106 4.405680 GGGAGGGGGTCAATCTTTAATTTG 59.594 45.833 0.00 0.00 0.00 2.32
106 108 6.192044 GGAGGGGGTCAATCTTTAATTTGTA 58.808 40.000 0.00 0.00 0.00 2.41
107 109 6.096423 GGAGGGGGTCAATCTTTAATTTGTAC 59.904 42.308 0.00 0.00 0.00 2.90
114 116 9.072294 GGTCAATCTTTAATTTGTACAAATCCG 57.928 33.333 29.10 18.51 39.88 4.18
121 123 2.758423 ATTTGTACAAATCCGGAAGGGC 59.242 45.455 24.88 0.00 41.25 5.19
124 126 7.071131 ATTTGTACAAATCCGGAAGGGCAAG 62.071 44.000 24.88 0.00 41.25 4.01
132 134 0.109132 CGGAAGGGCAAGTGAAATGC 60.109 55.000 0.00 0.00 43.08 3.56
138 140 1.608542 GGGCAAGTGAAATGCATGCAA 60.609 47.619 26.68 4.80 45.60 4.08
141 143 3.933955 GGCAAGTGAAATGCATGCAAATA 59.066 39.130 26.68 8.83 45.60 1.40
148 150 7.321908 AGTGAAATGCATGCAAATAACACATA 58.678 30.769 26.68 0.00 0.00 2.29
150 152 8.059502 GTGAAATGCATGCAAATAACACATATG 58.940 33.333 26.68 0.00 0.00 1.78
158 160 7.105241 TGCAAATAACACATATGGTTGCATA 57.895 32.000 17.50 4.52 0.00 3.14
162 164 8.839343 CAAATAACACATATGGTTGCATAGAGA 58.161 33.333 7.80 0.00 0.00 3.10
179 181 1.815003 GAGAGCCACAATTGGGACTTG 59.185 52.381 9.95 0.00 44.15 3.16
200 202 1.675310 TGCTTTGCCAGATGGTCCG 60.675 57.895 0.00 0.00 37.57 4.79
211 213 1.004745 AGATGGTCCGCAATCCAAAGT 59.995 47.619 0.00 0.00 37.27 2.66
212 214 1.818674 GATGGTCCGCAATCCAAAGTT 59.181 47.619 0.00 0.00 37.27 2.66
213 215 0.958091 TGGTCCGCAATCCAAAGTTG 59.042 50.000 0.00 0.00 0.00 3.16
286 646 9.466497 GATTATTGGCTTGGATATATTCTTCCA 57.534 33.333 0.00 0.00 40.24 3.53
289 649 7.387265 TTGGCTTGGATATATTCTTCCAGTA 57.613 36.000 0.00 0.00 42.73 2.74
291 651 8.679344 TGGCTTGGATATATTCTTCCAGTATA 57.321 34.615 0.00 0.00 42.73 1.47
292 652 9.284131 TGGCTTGGATATATTCTTCCAGTATAT 57.716 33.333 0.00 0.00 42.73 0.86
293 653 9.553064 GGCTTGGATATATTCTTCCAGTATATG 57.447 37.037 0.00 0.00 42.73 1.78
303 663 7.690454 TTCTTCCAGTATATGAAGGATTCCA 57.310 36.000 5.29 0.00 46.93 3.53
304 664 7.308450 TCTTCCAGTATATGAAGGATTCCAG 57.692 40.000 5.29 0.00 46.93 3.86
305 665 6.846505 TCTTCCAGTATATGAAGGATTCCAGT 59.153 38.462 5.29 0.00 46.93 4.00
306 666 8.010697 TCTTCCAGTATATGAAGGATTCCAGTA 58.989 37.037 5.29 0.00 46.93 2.74
307 667 8.742125 TTCCAGTATATGAAGGATTCCAGTAT 57.258 34.615 5.29 0.00 46.93 2.12
308 668 9.837681 TTCCAGTATATGAAGGATTCCAGTATA 57.162 33.333 5.29 0.88 46.93 1.47
319 679 7.025520 AGGATTCCAGTATATGAAGAATGGG 57.974 40.000 5.29 0.00 0.00 4.00
323 683 4.660303 TCCAGTATATGAAGAATGGGCACT 59.340 41.667 0.00 0.00 0.00 4.40
346 706 7.892241 CACTCCCTTCATTATTATTCATGGGAT 59.108 37.037 0.00 0.00 40.04 3.85
348 708 7.999042 TCCCTTCATTATTATTCATGGGATCA 58.001 34.615 0.00 0.00 36.43 2.92
353 713 8.868522 TCATTATTATTCATGGGATCACTTCC 57.131 34.615 0.00 0.00 44.62 3.46
360 720 5.779241 TCATGGGATCACTTCCTAAAAGT 57.221 39.130 0.00 0.00 44.75 2.66
375 735 4.025145 CCTAAAAGTGAAGACGCTTCGTTT 60.025 41.667 12.71 13.50 44.63 3.60
380 740 2.097347 GTGAAGACGCTTCGTTTCAGTC 60.097 50.000 12.71 0.00 41.37 3.51
388 748 0.249573 TTCGTTTCAGTCGGTGGACC 60.250 55.000 0.00 0.00 44.54 4.46
423 783 3.063084 ACCTCCTCCGTGCGACTC 61.063 66.667 0.00 0.00 0.00 3.36
424 784 3.062466 CCTCCTCCGTGCGACTCA 61.062 66.667 0.00 0.00 0.00 3.41
429 789 1.212751 CTCCGTGCGACTCATGTCA 59.787 57.895 0.00 0.00 43.06 3.58
433 793 1.349234 CGTGCGACTCATGTCATTGA 58.651 50.000 0.00 0.00 43.06 2.57
434 794 1.322637 CGTGCGACTCATGTCATTGAG 59.677 52.381 9.44 9.44 46.94 3.02
443 803 4.253685 CTCATGTCATTGAGTACCCGTTT 58.746 43.478 0.00 0.00 38.64 3.60
444 804 4.647611 TCATGTCATTGAGTACCCGTTTT 58.352 39.130 0.00 0.00 0.00 2.43
449 809 5.236911 TGTCATTGAGTACCCGTTTTTGTAC 59.763 40.000 0.00 0.00 38.06 2.90
456 816 6.598850 TGAGTACCCGTTTTTGTACTTTTTCT 59.401 34.615 4.05 0.00 45.69 2.52
466 826 8.603181 GTTTTTGTACTTTTTCTGCAACATCAT 58.397 29.630 0.00 0.00 0.00 2.45
468 828 6.389830 TGTACTTTTTCTGCAACATCATGT 57.610 33.333 0.00 0.00 0.00 3.21
482 842 7.279536 TGCAACATCATGTGTGTTACAAAATTT 59.720 29.630 15.38 0.00 43.77 1.82
483 843 8.759641 GCAACATCATGTGTGTTACAAAATTTA 58.240 29.630 15.38 0.00 43.77 1.40
488 848 9.691362 ATCATGTGTGTTACAAAATTTACTTCC 57.309 29.630 0.00 0.00 43.77 3.46
556 916 8.412456 TCTCTAACATCATCTTTGTTGCAAAAA 58.588 29.630 0.00 0.00 37.81 1.94
558 918 9.195411 TCTAACATCATCTTTGTTGCAAAAATC 57.805 29.630 2.11 0.00 37.81 2.17
563 924 5.990996 TCATCTTTGTTGCAAAAATCCCTTC 59.009 36.000 2.11 0.00 0.00 3.46
567 928 0.038709 TTGCAAAAATCCCTTCCGCG 60.039 50.000 0.00 0.00 0.00 6.46
582 943 1.206578 CGCGACAACACCCATGTTC 59.793 57.895 0.00 0.00 46.46 3.18
583 944 1.579429 GCGACAACACCCATGTTCC 59.421 57.895 0.00 0.00 46.46 3.62
587 948 2.099921 CGACAACACCCATGTTCCAAAA 59.900 45.455 0.00 0.00 46.46 2.44
589 950 4.702831 GACAACACCCATGTTCCAAAAAT 58.297 39.130 0.00 0.00 46.46 1.82
591 952 4.408596 ACAACACCCATGTTCCAAAAATCT 59.591 37.500 0.00 0.00 46.46 2.40
592 953 4.871933 ACACCCATGTTCCAAAAATCTC 57.128 40.909 0.00 0.00 34.46 2.75
603 1091 5.359194 TCCAAAAATCTCTAAGATCCGCT 57.641 39.130 0.00 0.00 32.89 5.52
635 1123 3.430236 GCAGCACGGCCCTTTATAAAATT 60.430 43.478 0.00 0.00 0.00 1.82
638 1126 6.334202 CAGCACGGCCCTTTATAAAATTTTA 58.666 36.000 12.85 12.85 0.00 1.52
641 1129 7.494298 AGCACGGCCCTTTATAAAATTTTAATG 59.506 33.333 14.35 4.04 0.00 1.90
642 1130 7.279090 GCACGGCCCTTTATAAAATTTTAATGT 59.721 33.333 14.35 1.66 0.00 2.71
643 1131 9.157104 CACGGCCCTTTATAAAATTTTAATGTT 57.843 29.630 14.35 1.32 0.00 2.71
644 1132 9.727859 ACGGCCCTTTATAAAATTTTAATGTTT 57.272 25.926 14.35 0.97 0.00 2.83
694 1182 5.646215 TGGGCCTTACTATTTTCCTTGAAA 58.354 37.500 4.53 0.00 0.00 2.69
695 1183 6.078664 TGGGCCTTACTATTTTCCTTGAAAA 58.921 36.000 4.53 4.64 44.04 2.29
699 1187 9.803315 GGCCTTACTATTTTCCTTGAAAATAAG 57.197 33.333 17.78 14.84 46.71 1.73
736 1225 1.137872 CATCTAGGCAGACCACTCACC 59.862 57.143 0.00 0.00 39.06 4.02
775 1271 4.974721 ACCCAGCAACCAAGCCCG 62.975 66.667 0.00 0.00 34.23 6.13
908 1408 1.141053 ACCAGATCGGCCACTATTTCC 59.859 52.381 2.24 0.00 39.03 3.13
1152 1668 4.394712 CCGCCCCTTCACTCGCTT 62.395 66.667 0.00 0.00 0.00 4.68
1192 1708 2.016704 CGGTGTGCGTGTCTCTGAC 61.017 63.158 0.00 0.00 0.00 3.51
1303 1819 0.794473 ACGAATTTCCCGTTTCGAGC 59.206 50.000 11.51 0.00 45.68 5.03
1309 1825 1.722011 TTCCCGTTTCGAGCATTCTC 58.278 50.000 0.00 0.00 35.99 2.87
1319 1835 1.734465 CGAGCATTCTCTTGGTTGGTC 59.266 52.381 0.00 0.00 37.19 4.02
1330 1846 4.415596 TCTTGGTTGGTCAAAGGCATTAT 58.584 39.130 0.00 0.00 0.00 1.28
1368 1885 3.882888 GTCTGTGATTGTCCAGGTTTCAA 59.117 43.478 0.00 0.00 0.00 2.69
1386 1903 5.966636 TTCAAGTGATATTTGATCGGTCG 57.033 39.130 0.00 0.00 34.76 4.79
1413 1930 1.227674 GCGGATGAGTGGGATGTCC 60.228 63.158 0.00 0.00 0.00 4.02
1424 1941 0.181350 GGGATGTCCGAGAAGGCATT 59.819 55.000 0.00 0.00 40.77 3.56
1440 1957 6.778069 AGAAGGCATTCATCAGATCATTCAAT 59.222 34.615 14.34 0.00 37.94 2.57
1491 2008 1.678101 GCCACTTTGCACTTCTGTTCT 59.322 47.619 0.00 0.00 0.00 3.01
1501 2018 4.214119 TGCACTTCTGTTCTGCTAATTGAC 59.786 41.667 0.00 0.00 0.00 3.18
1504 2021 5.237127 CACTTCTGTTCTGCTAATTGACACA 59.763 40.000 0.00 0.00 0.00 3.72
1556 2073 4.323868 CGATTTCTTCTTGTAGGACGACAC 59.676 45.833 0.00 0.00 0.00 3.67
1687 2208 4.826274 AAGGCTAACTTGCTGTAGATGA 57.174 40.909 0.00 0.00 38.21 2.92
1688 2209 5.365021 AAGGCTAACTTGCTGTAGATGAT 57.635 39.130 0.00 0.00 38.21 2.45
1694 2215 6.293298 GCTAACTTGCTGTAGATGATTGGATG 60.293 42.308 0.00 0.00 0.00 3.51
1696 2217 6.239217 ACTTGCTGTAGATGATTGGATGTA 57.761 37.500 0.00 0.00 0.00 2.29
1833 2367 1.576421 CTCAAGCACGGACTTTGGC 59.424 57.895 0.00 0.00 0.00 4.52
1872 2406 4.216731 CAGCAGCATTCTATTTATGTGCG 58.783 43.478 0.00 0.00 40.54 5.34
1891 2425 2.544685 CGAAGAGGCATAAGGTGACAG 58.455 52.381 0.00 0.00 38.81 3.51
1893 2427 1.577736 AGAGGCATAAGGTGACAGCT 58.422 50.000 0.07 0.07 38.81 4.24
1898 2432 2.615912 GGCATAAGGTGACAGCTGAATC 59.384 50.000 23.35 9.26 35.22 2.52
1899 2433 3.273434 GCATAAGGTGACAGCTGAATCA 58.727 45.455 23.35 12.19 0.00 2.57
1900 2434 3.311871 GCATAAGGTGACAGCTGAATCAG 59.688 47.826 23.35 5.78 34.12 2.90
1901 2435 4.511527 CATAAGGTGACAGCTGAATCAGT 58.488 43.478 23.35 5.63 33.43 3.41
1902 2436 5.664457 CATAAGGTGACAGCTGAATCAGTA 58.336 41.667 23.35 7.60 33.43 2.74
1903 2437 4.623932 AAGGTGACAGCTGAATCAGTAA 57.376 40.909 23.35 0.00 33.43 2.24
1904 2438 4.623932 AGGTGACAGCTGAATCAGTAAA 57.376 40.909 23.35 0.00 33.43 2.01
1905 2439 4.973168 AGGTGACAGCTGAATCAGTAAAA 58.027 39.130 23.35 0.00 33.43 1.52
1906 2440 5.376625 AGGTGACAGCTGAATCAGTAAAAA 58.623 37.500 23.35 0.00 33.43 1.94
1907 2441 6.006449 AGGTGACAGCTGAATCAGTAAAAAT 58.994 36.000 23.35 0.00 33.43 1.82
1908 2442 6.072286 AGGTGACAGCTGAATCAGTAAAAATG 60.072 38.462 23.35 4.57 33.43 2.32
1909 2443 6.088824 GTGACAGCTGAATCAGTAAAAATGG 58.911 40.000 23.35 0.00 33.43 3.16
1910 2444 5.769662 TGACAGCTGAATCAGTAAAAATGGT 59.230 36.000 23.35 0.00 33.43 3.55
1911 2445 6.265196 TGACAGCTGAATCAGTAAAAATGGTT 59.735 34.615 23.35 0.00 33.43 3.67
1925 2478 4.870123 AAATGGTTCACTTTGCATGCTA 57.130 36.364 20.33 8.83 0.00 3.49
2017 2570 7.333528 AGTTGACAAACTGAAGCTAATTGAA 57.666 32.000 0.00 0.00 45.12 2.69
2020 2573 7.333528 TGACAAACTGAAGCTAATTGAACTT 57.666 32.000 0.00 0.00 0.00 2.66
2060 2613 5.644636 TCTGAATTTACAACGGTAATGGACC 59.355 40.000 0.00 0.00 45.91 4.46
2141 2694 9.980166 GCGTCTGCTAAGTTTGTCATCACAAAA 62.980 40.741 0.00 0.00 44.76 2.44
2194 2748 5.105554 TGTTTTGACTGTTATTTGTGCTGGT 60.106 36.000 0.00 0.00 0.00 4.00
2211 2765 1.686052 TGGTTGCAGGTTTCAACATCC 59.314 47.619 7.95 0.00 44.02 3.51
2357 2911 8.347004 TGATATGCTAAAAGTTTGTGGATTGA 57.653 30.769 0.00 0.00 0.00 2.57
2404 2958 6.707161 AGCTTGTAATTTGCAATTGTTGATGT 59.293 30.769 7.40 0.00 0.00 3.06
2526 3081 4.112634 TGAACCTGCTTAATGTCCCTTT 57.887 40.909 0.00 0.00 0.00 3.11
2542 3097 9.990868 AATGTCCCTTTACCTTTCAAGTATTAT 57.009 29.630 0.00 0.00 0.00 1.28
2543 3098 8.801882 TGTCCCTTTACCTTTCAAGTATTATG 57.198 34.615 0.00 0.00 0.00 1.90
2552 3107 6.183360 ACCTTTCAAGTATTATGCTGATTGCC 60.183 38.462 0.00 0.00 42.00 4.52
2596 3151 9.337396 CATAAAGCCATAATAGTTTGGTACTCA 57.663 33.333 1.66 0.00 38.33 3.41
2600 3155 5.007724 GCCATAATAGTTTGGTACTCACTGC 59.992 44.000 1.66 0.00 38.33 4.40
2608 3163 1.270094 TGGTACTCACTGCGTTCCAAG 60.270 52.381 0.00 0.00 30.28 3.61
2616 3171 1.404035 ACTGCGTTCCAAGTTTGAACC 59.596 47.619 12.77 7.49 0.00 3.62
2628 3183 5.174395 CAAGTTTGAACCAAAACCATGACA 58.826 37.500 0.00 0.00 40.26 3.58
2629 3184 5.413309 AGTTTGAACCAAAACCATGACAA 57.587 34.783 0.00 0.00 40.26 3.18
2630 3185 5.418676 AGTTTGAACCAAAACCATGACAAG 58.581 37.500 0.00 0.00 40.26 3.16
2631 3186 5.186797 AGTTTGAACCAAAACCATGACAAGA 59.813 36.000 0.00 0.00 40.26 3.02
2632 3187 5.667539 TTGAACCAAAACCATGACAAGAA 57.332 34.783 0.00 0.00 0.00 2.52
2633 3188 5.867903 TGAACCAAAACCATGACAAGAAT 57.132 34.783 0.00 0.00 0.00 2.40
2641 3196 8.042515 CCAAAACCATGACAAGAATTATGGAAT 58.957 33.333 9.22 0.00 42.05 3.01
2673 3228 4.074970 ACTTGATTAACCAGAAGGCACTG 58.925 43.478 5.03 5.03 40.86 3.66
2698 3261 7.937394 TGATGAAGTGAGATCAAATGCATCTAT 59.063 33.333 14.40 0.00 30.30 1.98
2707 3270 9.545105 GAGATCAAATGCATCTATATAAGAGGG 57.455 37.037 0.00 0.00 37.74 4.30
2757 3336 0.166814 GCATCTCGTTTGCCAGACAC 59.833 55.000 0.00 0.00 33.95 3.67
2758 3337 1.511850 CATCTCGTTTGCCAGACACA 58.488 50.000 0.00 0.00 0.00 3.72
2778 3358 3.960102 ACATGGACACTGGTTTTTGTCAT 59.040 39.130 0.00 0.00 43.40 3.06
2779 3359 4.202141 ACATGGACACTGGTTTTTGTCATG 60.202 41.667 0.00 0.00 43.40 3.07
2799 3380 8.575589 TGTCATGTAGTTTGCAGTTTGATATTT 58.424 29.630 0.00 0.00 0.00 1.40
2816 3409 8.755696 TTGATATTTTGTTGTTTATGTCCTGC 57.244 30.769 0.00 0.00 0.00 4.85
2820 3413 3.641437 TGTTGTTTATGTCCTGCTTGC 57.359 42.857 0.00 0.00 0.00 4.01
2933 3528 4.074970 AGTTATCTCCACCAACAAGCAAG 58.925 43.478 0.00 0.00 0.00 4.01
2953 3559 3.751518 AGCCAAACCAGGTTAGTACTTG 58.248 45.455 4.87 0.00 0.00 3.16
2961 3567 3.326880 CCAGGTTAGTACTTGGGACTTGT 59.673 47.826 0.00 0.00 45.29 3.16
2969 3575 6.877611 AGTACTTGGGACTTGTTTACATTG 57.122 37.500 0.00 0.00 0.00 2.82
2971 3577 3.004315 ACTTGGGACTTGTTTACATTGCG 59.996 43.478 0.00 0.00 0.00 4.85
2993 3602 2.005960 CTAGGCCACTCGAACCCTCG 62.006 65.000 5.01 0.00 46.87 4.63
2998 3607 1.592400 CCACTCGAACCCTCGCACTA 61.592 60.000 0.00 0.00 45.04 2.74
3006 3615 0.907704 ACCCTCGCACTACCCATGAA 60.908 55.000 0.00 0.00 0.00 2.57
3007 3616 0.179073 CCCTCGCACTACCCATGAAG 60.179 60.000 0.00 0.00 0.00 3.02
3008 3617 0.811616 CCTCGCACTACCCATGAAGC 60.812 60.000 0.00 0.00 0.00 3.86
3009 3618 0.176680 CTCGCACTACCCATGAAGCT 59.823 55.000 0.00 0.00 0.00 3.74
3042 3655 4.748701 TCTGGTTTGTCTTAGACCCTACT 58.251 43.478 10.10 0.00 32.39 2.57
3119 3732 3.612247 AAGTGCCGCCACCAGCTAG 62.612 63.158 0.00 0.00 43.09 3.42
3126 3739 0.940126 CGCCACCAGCTAGCTAAATG 59.060 55.000 18.86 15.14 40.39 2.32
3133 3746 4.637534 CACCAGCTAGCTAAATGAACATGT 59.362 41.667 18.86 0.00 0.00 3.21
3138 3751 6.017605 CAGCTAGCTAAATGAACATGTAAGGG 60.018 42.308 18.86 0.00 0.00 3.95
3140 3753 6.542370 GCTAGCTAAATGAACATGTAAGGGAA 59.458 38.462 7.70 0.00 0.00 3.97
3141 3754 6.759497 AGCTAAATGAACATGTAAGGGAAC 57.241 37.500 0.00 0.00 0.00 3.62
3143 3756 6.375455 AGCTAAATGAACATGTAAGGGAACTG 59.625 38.462 0.00 0.00 42.68 3.16
3144 3757 6.374333 GCTAAATGAACATGTAAGGGAACTGA 59.626 38.462 0.00 0.00 42.68 3.41
3145 3758 7.094377 GCTAAATGAACATGTAAGGGAACTGAA 60.094 37.037 0.00 0.00 42.68 3.02
3146 3759 6.824305 AATGAACATGTAAGGGAACTGAAG 57.176 37.500 0.00 0.00 42.68 3.02
3147 3760 4.072131 TGAACATGTAAGGGAACTGAAGC 58.928 43.478 0.00 0.00 42.68 3.86
3148 3761 3.073274 ACATGTAAGGGAACTGAAGCC 57.927 47.619 0.00 0.00 42.68 4.35
3149 3762 2.644798 ACATGTAAGGGAACTGAAGCCT 59.355 45.455 0.00 0.00 42.68 4.58
3150 3763 2.859165 TGTAAGGGAACTGAAGCCTG 57.141 50.000 0.00 0.00 42.68 4.85
3151 3764 1.351017 TGTAAGGGAACTGAAGCCTGG 59.649 52.381 0.00 0.00 42.68 4.45
3152 3765 0.991920 TAAGGGAACTGAAGCCTGGG 59.008 55.000 0.00 0.00 42.68 4.45
3153 3766 0.772124 AAGGGAACTGAAGCCTGGGA 60.772 55.000 0.00 0.00 42.68 4.37
3155 3768 1.492993 GGGAACTGAAGCCTGGGAGT 61.493 60.000 0.00 0.00 0.00 3.85
3156 3769 0.402121 GGAACTGAAGCCTGGGAGTT 59.598 55.000 0.00 0.00 0.00 3.01
3157 3770 1.528129 GAACTGAAGCCTGGGAGTTG 58.472 55.000 0.00 0.00 0.00 3.16
3158 3771 0.111253 AACTGAAGCCTGGGAGTTGG 59.889 55.000 0.00 0.00 0.00 3.77
3159 3772 0.768221 ACTGAAGCCTGGGAGTTGGA 60.768 55.000 0.00 0.00 0.00 3.53
3160 3773 0.035630 CTGAAGCCTGGGAGTTGGAG 60.036 60.000 0.00 0.00 0.00 3.86
3163 3776 1.062488 AAGCCTGGGAGTTGGAGTGT 61.062 55.000 0.00 0.00 0.00 3.55
3164 3777 1.003233 GCCTGGGAGTTGGAGTGTC 60.003 63.158 0.00 0.00 0.00 3.67
3166 3779 0.987294 CCTGGGAGTTGGAGTGTCAT 59.013 55.000 0.00 0.00 0.00 3.06
3167 3780 1.339438 CCTGGGAGTTGGAGTGTCATG 60.339 57.143 0.00 0.00 0.00 3.07
3169 3782 0.036732 GGGAGTTGGAGTGTCATGCA 59.963 55.000 0.00 0.00 0.00 3.96
3206 3865 1.000396 GGGCACTTCTGGCTCCATT 60.000 57.895 0.00 0.00 42.72 3.16
3273 3936 6.603201 ACAAAGTGTTATACAATCAGGGGATG 59.397 38.462 0.00 0.00 32.92 3.51
3299 3962 3.436055 TAAACGGCGGTGGCATGC 61.436 61.111 13.24 9.90 42.47 4.06
3306 3972 2.023223 GCGGTGGCATGCTTGTTTG 61.023 57.895 18.92 4.33 39.62 2.93
3310 3976 2.094803 CGGTGGCATGCTTGTTTGATTA 60.095 45.455 18.92 0.00 0.00 1.75
3323 3989 1.458398 TTGATTATGTGCACGGGGTG 58.542 50.000 13.13 0.00 36.51 4.61
3409 4078 1.721487 GCTGTGATATTTGCGCCGT 59.279 52.632 4.18 0.00 0.00 5.68
3428 4097 3.442167 TTAGGTACGCGGCGCAGA 61.442 61.111 32.61 16.12 0.00 4.26
3432 4101 4.570663 GTACGCGGCGCAGATCCT 62.571 66.667 32.61 10.72 0.00 3.24
3443 4112 1.227205 CAGATCCTGAGTGCTCGCC 60.227 63.158 0.00 0.00 32.44 5.54
3448 4117 1.140589 CCTGAGTGCTCGCCTACTG 59.859 63.158 0.00 0.00 0.00 2.74
3473 4142 3.619733 CGACCATTTCATCTCCAACTGGA 60.620 47.826 0.00 0.00 43.08 3.86
3485 4155 6.627087 TCTCCAACTGGAAGATATTTCTGT 57.373 37.500 0.00 0.00 44.91 3.41
3561 4231 0.032678 CTCTCGACCAAGTGCACTGT 59.967 55.000 22.49 15.32 0.00 3.55
3563 4233 0.946221 CTCGACCAAGTGCACTGTCC 60.946 60.000 22.49 9.27 0.00 4.02
3564 4234 1.069765 CGACCAAGTGCACTGTCCT 59.930 57.895 22.49 0.38 0.00 3.85
3598 4268 2.109126 CGCTTTAGCCTGCCTCCAC 61.109 63.158 0.00 0.00 37.91 4.02
3600 4270 1.685224 CTTTAGCCTGCCTCCACCA 59.315 57.895 0.00 0.00 0.00 4.17
3601 4271 0.678048 CTTTAGCCTGCCTCCACCAC 60.678 60.000 0.00 0.00 0.00 4.16
3602 4272 1.133809 TTTAGCCTGCCTCCACCACT 61.134 55.000 0.00 0.00 0.00 4.00
3652 4322 3.769536 CAATTTTGTAGGGCATTCGGAC 58.230 45.455 0.00 0.00 0.00 4.79
3842 4512 1.643880 CGGATTGAAAAATGCAGGCC 58.356 50.000 0.00 0.00 0.00 5.19
3853 4523 0.251608 ATGCAGGCCGGGTAGTTTTT 60.252 50.000 2.18 0.00 0.00 1.94
3854 4524 0.891904 TGCAGGCCGGGTAGTTTTTC 60.892 55.000 2.18 0.00 0.00 2.29
3855 4525 1.592400 GCAGGCCGGGTAGTTTTTCC 61.592 60.000 2.18 0.00 0.00 3.13
3956 6388 2.259818 AGCCAACGCTCTCTCGTG 59.740 61.111 0.00 0.00 43.95 4.35
3957 6389 2.258591 GCCAACGCTCTCTCGTGA 59.741 61.111 0.00 0.00 42.46 4.35
3958 6390 1.803519 GCCAACGCTCTCTCGTGAG 60.804 63.158 8.20 8.20 42.46 3.51
3959 6391 1.581954 CCAACGCTCTCTCGTGAGT 59.418 57.895 13.77 0.00 42.46 3.41
3961 6393 0.791238 CAACGCTCTCTCGTGAGTCG 60.791 60.000 20.92 20.92 42.46 4.18
3965 6397 0.179210 GCTCTCTCGTGAGTCGTGAC 60.179 60.000 13.77 0.00 40.98 3.67
3993 6825 1.862201 CCTACGCGAAACTGACAACAA 59.138 47.619 15.93 0.00 0.00 2.83
4006 6838 2.551887 TGACAACAAATCACGATGGTGG 59.448 45.455 8.09 0.00 44.50 4.61
4007 6839 1.885887 ACAACAAATCACGATGGTGGG 59.114 47.619 8.09 0.00 44.50 4.61
4016 6848 2.731571 CGATGGTGGGGTGGACGAT 61.732 63.158 0.00 0.00 0.00 3.73
4021 6853 1.338136 GGTGGGGTGGACGATCTGAT 61.338 60.000 0.00 0.00 0.00 2.90
4022 6854 0.179073 GTGGGGTGGACGATCTGATG 60.179 60.000 0.00 0.00 0.00 3.07
4023 6855 1.227674 GGGGTGGACGATCTGATGC 60.228 63.158 0.00 0.00 0.00 3.91
4027 6859 2.353208 GGGTGGACGATCTGATGCTATC 60.353 54.545 0.00 0.00 0.00 2.08
4028 6860 2.297315 GGTGGACGATCTGATGCTATCA 59.703 50.000 0.00 0.00 37.76 2.15
4029 6861 3.056250 GGTGGACGATCTGATGCTATCAT 60.056 47.826 0.00 0.00 38.85 2.45
4030 6862 4.562347 GGTGGACGATCTGATGCTATCATT 60.562 45.833 0.00 0.00 38.85 2.57
4031 6863 4.993584 GTGGACGATCTGATGCTATCATTT 59.006 41.667 0.00 0.00 38.85 2.32
4032 6864 6.159293 GTGGACGATCTGATGCTATCATTTA 58.841 40.000 0.00 0.00 38.85 1.40
4033 6865 6.646653 GTGGACGATCTGATGCTATCATTTAA 59.353 38.462 0.00 0.00 38.85 1.52
4034 6866 7.332926 GTGGACGATCTGATGCTATCATTTAAT 59.667 37.037 0.00 0.00 38.85 1.40
4035 6867 7.879677 TGGACGATCTGATGCTATCATTTAATT 59.120 33.333 0.00 0.00 38.85 1.40
4036 6868 9.371136 GGACGATCTGATGCTATCATTTAATTA 57.629 33.333 0.00 0.00 38.85 1.40
4064 6896 2.921972 GGCACCATGGTGGGCAAA 60.922 61.111 39.04 0.00 43.37 3.68
4065 6897 2.515071 GGCACCATGGTGGGCAAAA 61.515 57.895 39.04 0.00 43.37 2.44
4066 6898 1.004679 GCACCATGGTGGGCAAAAG 60.005 57.895 39.04 17.27 43.37 2.27
4067 6899 1.757423 GCACCATGGTGGGCAAAAGT 61.757 55.000 39.04 2.45 43.37 2.66
4068 6900 0.318120 CACCATGGTGGGCAAAAGTC 59.682 55.000 33.56 0.00 43.37 3.01
4069 6901 1.178534 ACCATGGTGGGCAAAAGTCG 61.179 55.000 18.99 0.00 43.37 4.18
4070 6902 1.586028 CATGGTGGGCAAAAGTCGG 59.414 57.895 0.00 0.00 0.00 4.79
4071 6903 2.275380 ATGGTGGGCAAAAGTCGGC 61.275 57.895 0.00 0.00 0.00 5.54
4076 6908 3.133946 GGCAAAAGTCGGCCCAAA 58.866 55.556 0.00 0.00 44.53 3.28
4077 6909 1.300620 GGCAAAAGTCGGCCCAAAC 60.301 57.895 0.00 0.00 44.53 2.93
4078 6910 1.300620 GCAAAAGTCGGCCCAAACC 60.301 57.895 0.00 0.00 0.00 3.27
4079 6911 2.022240 GCAAAAGTCGGCCCAAACCA 62.022 55.000 0.00 0.00 0.00 3.67
4080 6912 0.678950 CAAAAGTCGGCCCAAACCAT 59.321 50.000 0.00 0.00 0.00 3.55
4081 6913 1.069978 CAAAAGTCGGCCCAAACCATT 59.930 47.619 0.00 0.00 0.00 3.16
4082 6914 1.419381 AAAGTCGGCCCAAACCATTT 58.581 45.000 0.00 0.00 0.00 2.32
4083 6915 1.419381 AAGTCGGCCCAAACCATTTT 58.581 45.000 0.00 0.00 0.00 1.82
4084 6916 0.966179 AGTCGGCCCAAACCATTTTC 59.034 50.000 0.00 0.00 0.00 2.29
4085 6917 0.676736 GTCGGCCCAAACCATTTTCA 59.323 50.000 0.00 0.00 0.00 2.69
4086 6918 1.275010 GTCGGCCCAAACCATTTTCAT 59.725 47.619 0.00 0.00 0.00 2.57
4087 6919 1.974236 TCGGCCCAAACCATTTTCATT 59.026 42.857 0.00 0.00 0.00 2.57
4088 6920 2.370189 TCGGCCCAAACCATTTTCATTT 59.630 40.909 0.00 0.00 0.00 2.32
4089 6921 3.145286 CGGCCCAAACCATTTTCATTTT 58.855 40.909 0.00 0.00 0.00 1.82
4090 6922 3.188254 CGGCCCAAACCATTTTCATTTTC 59.812 43.478 0.00 0.00 0.00 2.29
4091 6923 4.397420 GGCCCAAACCATTTTCATTTTCT 58.603 39.130 0.00 0.00 0.00 2.52
4092 6924 5.555966 GGCCCAAACCATTTTCATTTTCTA 58.444 37.500 0.00 0.00 0.00 2.10
4093 6925 6.000840 GGCCCAAACCATTTTCATTTTCTAA 58.999 36.000 0.00 0.00 0.00 2.10
4094 6926 6.488344 GGCCCAAACCATTTTCATTTTCTAAA 59.512 34.615 0.00 0.00 0.00 1.85
4095 6927 7.013750 GGCCCAAACCATTTTCATTTTCTAAAA 59.986 33.333 0.00 0.00 0.00 1.52
4096 6928 8.075574 GCCCAAACCATTTTCATTTTCTAAAAG 58.924 33.333 0.00 0.00 0.00 2.27
4097 6929 9.336171 CCCAAACCATTTTCATTTTCTAAAAGA 57.664 29.630 0.00 0.00 0.00 2.52
4106 6938 8.519492 TTTCATTTTCTAAAAGATGAAAGGCG 57.481 30.769 10.87 0.00 44.56 5.52
4107 6939 7.447374 TCATTTTCTAAAAGATGAAAGGCGA 57.553 32.000 0.00 0.00 34.16 5.54
4108 6940 8.055279 TCATTTTCTAAAAGATGAAAGGCGAT 57.945 30.769 0.00 0.00 34.16 4.58
4109 6941 9.173021 TCATTTTCTAAAAGATGAAAGGCGATA 57.827 29.630 0.00 0.00 34.16 2.92
4110 6942 9.226345 CATTTTCTAAAAGATGAAAGGCGATAC 57.774 33.333 0.00 0.00 34.29 2.24
4111 6943 7.915293 TTTCTAAAAGATGAAAGGCGATACA 57.085 32.000 0.00 0.00 0.00 2.29
4112 6944 7.915293 TTCTAAAAGATGAAAGGCGATACAA 57.085 32.000 0.00 0.00 0.00 2.41
4113 6945 7.915293 TCTAAAAGATGAAAGGCGATACAAA 57.085 32.000 0.00 0.00 0.00 2.83
4114 6946 8.330466 TCTAAAAGATGAAAGGCGATACAAAA 57.670 30.769 0.00 0.00 0.00 2.44
4115 6947 8.234546 TCTAAAAGATGAAAGGCGATACAAAAC 58.765 33.333 0.00 0.00 0.00 2.43
4116 6948 5.957842 AAGATGAAAGGCGATACAAAACA 57.042 34.783 0.00 0.00 0.00 2.83
4117 6949 5.957842 AGATGAAAGGCGATACAAAACAA 57.042 34.783 0.00 0.00 0.00 2.83
4118 6950 5.699839 AGATGAAAGGCGATACAAAACAAC 58.300 37.500 0.00 0.00 0.00 3.32
4119 6951 3.879427 TGAAAGGCGATACAAAACAACG 58.121 40.909 0.00 0.00 0.00 4.10
4120 6952 2.981400 AAGGCGATACAAAACAACGG 57.019 45.000 0.00 0.00 0.00 4.44
4121 6953 0.519961 AGGCGATACAAAACAACGGC 59.480 50.000 0.00 0.00 46.65 5.68
4122 6954 0.519961 GGCGATACAAAACAACGGCT 59.480 50.000 0.00 0.00 43.88 5.52
4123 6955 1.733360 GGCGATACAAAACAACGGCTA 59.267 47.619 0.00 0.00 43.88 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.537580 GAATCGTGGTGGTATGGCTTTA 58.462 45.455 0.00 0.00 0.00 1.85
14 15 1.567504 GTCGAATCGTGGTGGTATGG 58.432 55.000 1.52 0.00 0.00 2.74
36 37 1.476110 CCTCGTGGAAGGGTTTCAACA 60.476 52.381 0.00 0.00 37.12 3.33
37 38 1.202722 TCCTCGTGGAAGGGTTTCAAC 60.203 52.381 3.14 0.00 39.87 3.18
49 50 2.423538 GGTTTTTGATCCATCCTCGTGG 59.576 50.000 0.00 0.00 40.76 4.94
63 64 1.632589 CCTCCTCCCCTTGGTTTTTG 58.367 55.000 0.00 0.00 0.00 2.44
68 69 2.456840 CTCCCTCCTCCCCTTGGT 59.543 66.667 0.00 0.00 0.00 3.67
69 70 2.367512 CCTCCCTCCTCCCCTTGG 60.368 72.222 0.00 0.00 0.00 3.61
70 71 2.367512 CCCTCCCTCCTCCCCTTG 60.368 72.222 0.00 0.00 0.00 3.61
71 72 3.711782 CCCCTCCCTCCTCCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
75 76 2.569373 ATTGACCCCCTCCCTCCTCC 62.569 65.000 0.00 0.00 0.00 4.30
78 79 0.624795 AAGATTGACCCCCTCCCTCC 60.625 60.000 0.00 0.00 0.00 4.30
80 81 2.680439 TAAAGATTGACCCCCTCCCT 57.320 50.000 0.00 0.00 0.00 4.20
84 86 6.557568 TGTACAAATTAAAGATTGACCCCCT 58.442 36.000 0.00 0.00 0.00 4.79
87 89 9.366216 GGATTTGTACAAATTAAAGATTGACCC 57.634 33.333 29.47 18.92 40.77 4.46
98 100 4.399934 GCCCTTCCGGATTTGTACAAATTA 59.600 41.667 29.47 15.71 40.77 1.40
102 104 1.074084 TGCCCTTCCGGATTTGTACAA 59.926 47.619 4.15 3.59 0.00 2.41
104 106 1.743394 CTTGCCCTTCCGGATTTGTAC 59.257 52.381 4.15 0.00 0.00 2.90
106 108 0.112412 ACTTGCCCTTCCGGATTTGT 59.888 50.000 4.15 0.00 0.00 2.83
107 109 0.527565 CACTTGCCCTTCCGGATTTG 59.472 55.000 4.15 0.00 0.00 2.32
114 116 0.968405 TGCATTTCACTTGCCCTTCC 59.032 50.000 0.00 0.00 39.39 3.46
121 123 6.073711 TGTGTTATTTGCATGCATTTCACTTG 60.074 34.615 23.37 0.00 0.00 3.16
124 126 5.842619 TGTGTTATTTGCATGCATTTCAC 57.157 34.783 23.37 22.89 0.00 3.18
125 127 7.224949 CCATATGTGTTATTTGCATGCATTTCA 59.775 33.333 23.37 13.41 0.00 2.69
126 128 7.225145 ACCATATGTGTTATTTGCATGCATTTC 59.775 33.333 23.37 11.01 0.00 2.17
127 129 7.049133 ACCATATGTGTTATTTGCATGCATTT 58.951 30.769 23.37 14.39 0.00 2.32
130 132 5.595257 ACCATATGTGTTATTTGCATGCA 57.405 34.783 18.46 18.46 0.00 3.96
131 133 5.276963 GCAACCATATGTGTTATTTGCATGC 60.277 40.000 11.82 11.82 38.18 4.06
132 134 5.811100 TGCAACCATATGTGTTATTTGCATG 59.189 36.000 13.09 0.00 42.06 4.06
138 140 7.173907 GCTCTCTATGCAACCATATGTGTTATT 59.826 37.037 1.24 0.00 33.66 1.40
141 143 4.818546 GCTCTCTATGCAACCATATGTGTT 59.181 41.667 1.24 3.08 33.66 3.32
148 150 1.561076 TGTGGCTCTCTATGCAACCAT 59.439 47.619 0.00 0.00 33.65 3.55
150 152 2.113860 TTGTGGCTCTCTATGCAACC 57.886 50.000 0.00 0.00 33.65 3.77
158 160 1.366319 AGTCCCAATTGTGGCTCTCT 58.634 50.000 4.43 0.90 44.46 3.10
162 164 3.848353 ACAAGTCCCAATTGTGGCT 57.152 47.368 4.43 0.00 44.46 4.75
179 181 0.242017 GACCATCTGGCAAAGCACAC 59.758 55.000 0.00 0.00 39.32 3.82
278 638 8.280258 TGGAATCCTTCATATACTGGAAGAAT 57.720 34.615 0.00 0.00 42.39 2.40
281 641 7.072263 ACTGGAATCCTTCATATACTGGAAG 57.928 40.000 0.00 0.00 40.11 3.46
291 651 9.736414 CATTCTTCATATACTGGAATCCTTCAT 57.264 33.333 0.00 0.00 0.00 2.57
292 652 8.159447 CCATTCTTCATATACTGGAATCCTTCA 58.841 37.037 0.00 0.00 0.00 3.02
293 653 7.609532 CCCATTCTTCATATACTGGAATCCTTC 59.390 40.741 0.00 0.00 0.00 3.46
294 654 7.465116 CCCATTCTTCATATACTGGAATCCTT 58.535 38.462 0.00 0.00 0.00 3.36
295 655 6.523150 GCCCATTCTTCATATACTGGAATCCT 60.523 42.308 0.00 0.00 0.00 3.24
296 656 5.649831 GCCCATTCTTCATATACTGGAATCC 59.350 44.000 0.00 0.00 0.00 3.01
297 657 6.150140 GTGCCCATTCTTCATATACTGGAATC 59.850 42.308 0.00 0.00 0.00 2.52
298 658 6.006449 GTGCCCATTCTTCATATACTGGAAT 58.994 40.000 0.00 0.00 0.00 3.01
299 659 5.132648 AGTGCCCATTCTTCATATACTGGAA 59.867 40.000 0.00 0.00 0.00 3.53
300 660 4.660303 AGTGCCCATTCTTCATATACTGGA 59.340 41.667 0.00 0.00 0.00 3.86
301 661 4.978099 AGTGCCCATTCTTCATATACTGG 58.022 43.478 0.00 0.00 0.00 4.00
302 662 4.999950 GGAGTGCCCATTCTTCATATACTG 59.000 45.833 0.00 0.00 34.14 2.74
303 663 5.234466 GGAGTGCCCATTCTTCATATACT 57.766 43.478 0.00 0.00 34.14 2.12
319 679 6.071728 CCCATGAATAATAATGAAGGGAGTGC 60.072 42.308 0.00 0.00 35.81 4.40
323 683 7.890127 GTGATCCCATGAATAATAATGAAGGGA 59.110 37.037 0.00 0.00 45.97 4.20
348 708 4.338379 AGCGTCTTCACTTTTAGGAAGT 57.662 40.909 0.00 0.00 40.98 3.01
352 712 3.057734 ACGAAGCGTCTTCACTTTTAGG 58.942 45.455 16.26 4.00 33.69 2.69
353 713 4.710528 AACGAAGCGTCTTCACTTTTAG 57.289 40.909 16.26 4.53 39.99 1.85
360 720 2.124903 GACTGAAACGAAGCGTCTTCA 58.875 47.619 16.26 12.94 39.99 3.02
364 724 0.938168 ACCGACTGAAACGAAGCGTC 60.938 55.000 0.00 0.00 39.99 5.19
367 727 0.599204 TCCACCGACTGAAACGAAGC 60.599 55.000 0.00 0.00 0.00 3.86
400 760 3.760035 CACGGAGGAGGTGACGGG 61.760 72.222 0.00 0.00 37.60 5.28
401 761 4.436998 GCACGGAGGAGGTGACGG 62.437 72.222 0.00 0.00 37.60 4.79
402 762 4.778415 CGCACGGAGGAGGTGACG 62.778 72.222 0.00 0.00 37.60 4.35
423 783 5.153513 CAAAAACGGGTACTCAATGACATG 58.846 41.667 0.00 0.00 0.00 3.21
424 784 4.825085 ACAAAAACGGGTACTCAATGACAT 59.175 37.500 0.00 0.00 0.00 3.06
429 789 6.947644 AAAGTACAAAAACGGGTACTCAAT 57.052 33.333 5.07 0.00 46.97 2.57
434 794 5.456497 GCAGAAAAAGTACAAAAACGGGTAC 59.544 40.000 0.00 0.00 40.06 3.34
436 796 4.082136 TGCAGAAAAAGTACAAAAACGGGT 60.082 37.500 0.00 0.00 0.00 5.28
439 799 6.382821 TGTTGCAGAAAAAGTACAAAAACG 57.617 33.333 0.00 0.00 0.00 3.60
443 803 7.222417 CACATGATGTTGCAGAAAAAGTACAAA 59.778 33.333 0.00 0.00 0.00 2.83
444 804 6.696583 CACATGATGTTGCAGAAAAAGTACAA 59.303 34.615 0.00 0.00 0.00 2.41
449 809 5.045215 ACACACATGATGTTGCAGAAAAAG 58.955 37.500 0.00 0.00 40.64 2.27
456 816 4.907879 TTGTAACACACATGATGTTGCA 57.092 36.364 23.49 23.49 46.57 4.08
466 826 7.086230 ACGGAAGTAAATTTTGTAACACACA 57.914 32.000 0.00 0.00 46.88 3.72
482 842 5.801531 ACATGGATGCTATTACGGAAGTA 57.198 39.130 0.00 0.00 46.88 2.24
483 843 6.711569 GCAACATGGATGCTATTACGGAAGT 61.712 44.000 16.00 0.00 43.67 3.01
488 848 4.550577 TTGCAACATGGATGCTATTACG 57.449 40.909 21.57 0.00 44.14 3.18
528 888 8.791327 TTGCAACAAAGATGATGTTAGAGATA 57.209 30.769 0.00 0.00 38.90 1.98
531 891 8.578308 TTTTTGCAACAAAGATGATGTTAGAG 57.422 30.769 0.00 0.00 38.90 2.43
533 893 8.437742 GGATTTTTGCAACAAAGATGATGTTAG 58.562 33.333 0.00 0.00 38.90 2.34
543 903 3.494251 CGGAAGGGATTTTTGCAACAAAG 59.506 43.478 0.00 0.00 0.00 2.77
558 918 3.047877 GGTGTTGTCGCGGAAGGG 61.048 66.667 6.13 0.00 46.71 3.95
563 924 2.258013 AACATGGGTGTTGTCGCGG 61.258 57.895 6.13 0.00 46.43 6.46
582 943 4.274459 CCAGCGGATCTTAGAGATTTTTGG 59.726 45.833 0.00 0.00 34.53 3.28
583 944 4.260948 GCCAGCGGATCTTAGAGATTTTTG 60.261 45.833 0.00 0.00 34.53 2.44
587 948 1.346068 GGCCAGCGGATCTTAGAGATT 59.654 52.381 0.00 0.00 34.53 2.40
589 950 1.456196 CGGCCAGCGGATCTTAGAGA 61.456 60.000 2.24 0.00 0.00 3.10
591 952 1.455032 TCGGCCAGCGGATCTTAGA 60.455 57.895 2.24 0.00 0.00 2.10
592 953 1.300233 GTCGGCCAGCGGATCTTAG 60.300 63.158 2.24 0.00 0.00 2.18
650 1138 8.478066 GGCCCAAAGAAATATACAAGAGAAAAT 58.522 33.333 0.00 0.00 0.00 1.82
694 1182 6.737720 TGATGAGTGGATCTGCTACTTATT 57.262 37.500 0.00 0.00 38.58 1.40
695 1183 6.725369 AGATGATGAGTGGATCTGCTACTTAT 59.275 38.462 0.00 0.00 38.58 1.73
696 1184 6.073981 AGATGATGAGTGGATCTGCTACTTA 58.926 40.000 0.00 0.00 38.58 2.24
699 1187 4.870123 AGATGATGAGTGGATCTGCTAC 57.130 45.455 0.00 0.00 0.00 3.58
736 1225 4.077184 TTACGCTCGGGTGGGCTG 62.077 66.667 0.00 0.00 0.00 4.85
750 1239 0.468400 TGGTTGCTGGGTTGGGTTAC 60.468 55.000 0.00 0.00 0.00 2.50
807 1307 2.280186 CGCCTATGCCCTTCCGAC 60.280 66.667 0.00 0.00 0.00 4.79
808 1308 4.235762 GCGCCTATGCCCTTCCGA 62.236 66.667 0.00 0.00 0.00 4.55
810 1310 3.750373 TTCGCGCCTATGCCCTTCC 62.750 63.158 0.00 0.00 0.00 3.46
908 1408 2.052104 GTTTCGGCATTGGAGGGGG 61.052 63.158 0.00 0.00 0.00 5.40
1152 1668 0.186386 GAGATCGAGGGAGGGGAAGA 59.814 60.000 0.00 0.00 0.00 2.87
1303 1819 3.305608 GCCTTTGACCAACCAAGAGAATG 60.306 47.826 0.00 0.00 0.00 2.67
1309 1825 4.806640 ATAATGCCTTTGACCAACCAAG 57.193 40.909 0.00 0.00 0.00 3.61
1319 1835 4.268405 GCAAACGGATCAATAATGCCTTTG 59.732 41.667 0.00 0.00 35.94 2.77
1330 1846 2.948979 ACAGACAAAGCAAACGGATCAA 59.051 40.909 0.00 0.00 0.00 2.57
1368 1885 3.005897 CCTCCGACCGATCAAATATCACT 59.994 47.826 0.00 0.00 0.00 3.41
1386 1903 4.899239 CTCATCCGCACCGCCTCC 62.899 72.222 0.00 0.00 0.00 4.30
1413 1930 3.725490 TGATCTGATGAATGCCTTCTCG 58.275 45.455 0.00 0.00 32.29 4.04
1424 1941 3.250040 CAGCGCATTGAATGATCTGATGA 59.750 43.478 11.47 0.00 34.94 2.92
1440 1957 4.728110 AGCCCATTCTGCAGCGCA 62.728 61.111 11.47 3.35 36.92 6.09
1491 2008 2.032117 CACTTGCGTGTGTCAATTAGCA 60.032 45.455 1.32 0.00 36.39 3.49
1501 2018 0.319900 AGGCTAGTCACTTGCGTGTG 60.320 55.000 5.61 2.90 41.89 3.82
1504 2021 1.893801 AGTAAGGCTAGTCACTTGCGT 59.106 47.619 5.10 2.70 34.98 5.24
1515 2032 4.672587 ATCGCTCAATTCAGTAAGGCTA 57.327 40.909 0.00 0.00 0.00 3.93
1516 2033 3.550437 ATCGCTCAATTCAGTAAGGCT 57.450 42.857 0.00 0.00 0.00 4.58
1522 2039 5.471456 ACAAGAAGAAATCGCTCAATTCAGT 59.529 36.000 0.00 0.00 0.00 3.41
1523 2040 5.936054 ACAAGAAGAAATCGCTCAATTCAG 58.064 37.500 0.00 0.00 0.00 3.02
1556 2073 0.452987 CCCAATTCACGCACATCCAG 59.547 55.000 0.00 0.00 0.00 3.86
1687 2208 3.033184 CCAGGCCAATTGTACATCCAAT 58.967 45.455 5.01 0.00 36.62 3.16
1688 2209 2.455557 CCAGGCCAATTGTACATCCAA 58.544 47.619 5.01 0.00 0.00 3.53
1694 2215 0.746659 GCATCCCAGGCCAATTGTAC 59.253 55.000 5.01 0.00 0.00 2.90
1696 2217 0.544833 TTGCATCCCAGGCCAATTGT 60.545 50.000 5.01 0.00 0.00 2.71
1833 2367 1.577328 CTGCAGTAAACACTGGGCGG 61.577 60.000 5.25 0.00 38.14 6.13
1836 2370 0.877071 CTGCTGCAGTAAACACTGGG 59.123 55.000 21.21 0.00 38.14 4.45
1872 2406 2.093235 AGCTGTCACCTTATGCCTCTTC 60.093 50.000 0.00 0.00 0.00 2.87
1891 2425 6.681777 AGTGAACCATTTTTACTGATTCAGC 58.318 36.000 13.64 0.00 34.37 4.26
1893 2427 7.437862 GCAAAGTGAACCATTTTTACTGATTCA 59.562 33.333 0.00 0.00 0.00 2.57
1898 2432 6.564499 GCATGCAAAGTGAACCATTTTTACTG 60.564 38.462 14.21 0.00 0.00 2.74
1899 2433 5.466393 GCATGCAAAGTGAACCATTTTTACT 59.534 36.000 14.21 0.00 0.00 2.24
1900 2434 5.466393 AGCATGCAAAGTGAACCATTTTTAC 59.534 36.000 21.98 0.00 0.00 2.01
1901 2435 5.609423 AGCATGCAAAGTGAACCATTTTTA 58.391 33.333 21.98 0.00 0.00 1.52
1902 2436 4.453751 AGCATGCAAAGTGAACCATTTTT 58.546 34.783 21.98 0.00 0.00 1.94
1903 2437 4.075963 AGCATGCAAAGTGAACCATTTT 57.924 36.364 21.98 0.00 0.00 1.82
1904 2438 3.756933 AGCATGCAAAGTGAACCATTT 57.243 38.095 21.98 0.00 0.00 2.32
1905 2439 3.828451 ACTAGCATGCAAAGTGAACCATT 59.172 39.130 21.98 0.00 0.00 3.16
1906 2440 3.424703 ACTAGCATGCAAAGTGAACCAT 58.575 40.909 21.98 0.00 0.00 3.55
1907 2441 2.862541 ACTAGCATGCAAAGTGAACCA 58.137 42.857 21.98 0.00 0.00 3.67
1908 2442 3.568538 CAACTAGCATGCAAAGTGAACC 58.431 45.455 21.98 0.00 0.00 3.62
1909 2443 3.253188 TCCAACTAGCATGCAAAGTGAAC 59.747 43.478 21.98 0.00 0.00 3.18
1910 2444 3.485394 TCCAACTAGCATGCAAAGTGAA 58.515 40.909 21.98 8.96 0.00 3.18
1911 2445 3.076621 CTCCAACTAGCATGCAAAGTGA 58.923 45.455 21.98 14.82 0.00 3.41
1925 2478 5.221048 GCAAATCATTTATACGCCTCCAACT 60.221 40.000 0.00 0.00 0.00 3.16
1963 2516 3.324846 GCAGGGAAATTGAGGAAAGGTTT 59.675 43.478 0.00 0.00 0.00 3.27
2017 2570 4.772624 TCAGAGCTAGATGTACCACAAAGT 59.227 41.667 0.00 0.00 0.00 2.66
2020 2573 5.939764 ATTCAGAGCTAGATGTACCACAA 57.060 39.130 0.00 0.00 0.00 3.33
2060 2613 8.671921 ACTGTATGCAAAGATAAGACATTTCAG 58.328 33.333 0.00 0.00 32.73 3.02
2065 2618 7.066284 GGACAACTGTATGCAAAGATAAGACAT 59.934 37.037 0.00 0.00 0.00 3.06
2070 2623 7.148086 GGAATGGACAACTGTATGCAAAGATAA 60.148 37.037 0.00 0.00 0.00 1.75
2141 2694 7.466746 AATGTGTAGCACCAATCTAAACATT 57.533 32.000 10.97 10.97 44.23 2.71
2194 2748 2.299582 CCATGGATGTTGAAACCTGCAA 59.700 45.455 5.56 0.00 29.93 4.08
2205 2759 2.379907 ACAAAGGTCTCCCATGGATGTT 59.620 45.455 15.22 0.00 0.00 2.71
2211 2765 4.281688 ACATCAAAACAAAGGTCTCCCATG 59.718 41.667 0.00 0.00 0.00 3.66
2404 2958 2.819608 GGCAAAACATCCAGCAGTTCTA 59.180 45.455 0.00 0.00 0.00 2.10
2526 3081 7.930217 GCAATCAGCATAATACTTGAAAGGTA 58.070 34.615 0.00 0.00 44.79 3.08
2543 3098 3.863142 ATTTCAGAAGTGGCAATCAGC 57.137 42.857 0.00 0.00 44.65 4.26
2552 3107 7.487189 GGCTTTATGTCATGAATTTCAGAAGTG 59.513 37.037 0.00 0.00 0.00 3.16
2596 3151 7.521017 TTTTGGTTCAAACTTGGAACGCAGT 62.521 40.000 3.39 0.00 44.29 4.40
2600 3155 3.615056 GGTTTTGGTTCAAACTTGGAACG 59.385 43.478 3.39 0.00 44.29 3.95
2608 3163 5.415221 TCTTGTCATGGTTTTGGTTCAAAC 58.585 37.500 0.00 0.00 32.79 2.93
2616 3171 8.875803 CATTCCATAATTCTTGTCATGGTTTTG 58.124 33.333 3.23 0.00 39.21 2.44
2628 3183 6.621514 AGTACTCCCTCCATTCCATAATTCTT 59.378 38.462 0.00 0.00 0.00 2.52
2629 3184 6.153924 AGTACTCCCTCCATTCCATAATTCT 58.846 40.000 0.00 0.00 0.00 2.40
2630 3185 6.441088 AGTACTCCCTCCATTCCATAATTC 57.559 41.667 0.00 0.00 0.00 2.17
2631 3186 6.389869 TCAAGTACTCCCTCCATTCCATAATT 59.610 38.462 0.00 0.00 0.00 1.40
2632 3187 5.911178 TCAAGTACTCCCTCCATTCCATAAT 59.089 40.000 0.00 0.00 0.00 1.28
2633 3188 5.285401 TCAAGTACTCCCTCCATTCCATAA 58.715 41.667 0.00 0.00 0.00 1.90
2641 3196 4.431378 TGGTTAATCAAGTACTCCCTCCA 58.569 43.478 0.00 0.00 0.00 3.86
2673 3228 6.621316 AGATGCATTTGATCTCACTTCATC 57.379 37.500 0.00 0.94 0.00 2.92
2698 3261 6.463049 GCTGCAAGTCTATGTTCCCTCTTATA 60.463 42.308 0.00 0.00 35.30 0.98
2703 3266 2.093235 AGCTGCAAGTCTATGTTCCCTC 60.093 50.000 1.02 0.00 35.30 4.30
2705 3268 2.409948 AGCTGCAAGTCTATGTTCCC 57.590 50.000 1.02 0.00 35.30 3.97
2707 3270 7.278868 ACAATTACTAGCTGCAAGTCTATGTTC 59.721 37.037 1.02 0.00 35.30 3.18
2757 3336 4.202141 ACATGACAAAAACCAGTGTCCATG 60.202 41.667 0.00 0.00 42.89 3.66
2758 3337 3.960102 ACATGACAAAAACCAGTGTCCAT 59.040 39.130 0.00 0.00 42.89 3.41
2778 3358 9.029243 CAACAAAATATCAAACTGCAAACTACA 57.971 29.630 0.00 0.00 0.00 2.74
2779 3359 9.030301 ACAACAAAATATCAAACTGCAAACTAC 57.970 29.630 0.00 0.00 0.00 2.73
2799 3380 3.549827 CGCAAGCAGGACATAAACAACAA 60.550 43.478 0.00 0.00 0.00 2.83
2810 3403 2.358003 AGCAGTCGCAAGCAGGAC 60.358 61.111 0.00 0.00 42.27 3.85
2815 3408 4.099170 CAGGCAGCAGTCGCAAGC 62.099 66.667 0.00 0.00 42.27 4.01
2816 3409 1.303799 AATCAGGCAGCAGTCGCAAG 61.304 55.000 0.00 0.00 42.27 4.01
2820 3413 0.725686 CAAGAATCAGGCAGCAGTCG 59.274 55.000 0.00 0.00 0.00 4.18
2933 3528 2.817844 CCAAGTACTAACCTGGTTTGGC 59.182 50.000 18.58 12.53 33.18 4.52
2953 3559 1.883926 ACCGCAATGTAAACAAGTCCC 59.116 47.619 0.00 0.00 0.00 4.46
2955 3561 4.092968 CCTAGACCGCAATGTAAACAAGTC 59.907 45.833 0.00 0.00 0.00 3.01
2957 3563 3.181510 GCCTAGACCGCAATGTAAACAAG 60.182 47.826 0.00 0.00 0.00 3.16
2961 3567 1.279558 TGGCCTAGACCGCAATGTAAA 59.720 47.619 3.32 0.00 0.00 2.01
2969 3575 2.707849 TTCGAGTGGCCTAGACCGC 61.708 63.158 3.32 0.00 40.71 5.68
2971 3577 1.516423 GGTTCGAGTGGCCTAGACC 59.484 63.158 3.32 0.00 0.00 3.85
2993 3602 5.008712 GGTAATTTAGCTTCATGGGTAGTGC 59.991 44.000 0.00 0.00 0.00 4.40
2998 3607 5.430089 AGAGAGGTAATTTAGCTTCATGGGT 59.570 40.000 9.37 0.00 36.51 4.51
3042 3655 0.035056 GAGCTTGCTTCCTGGGCTTA 60.035 55.000 0.00 0.00 33.13 3.09
3108 3721 2.332063 TCATTTAGCTAGCTGGTGGC 57.668 50.000 27.68 7.14 42.19 5.01
3119 3732 6.374333 TCAGTTCCCTTACATGTTCATTTAGC 59.626 38.462 2.30 0.00 0.00 3.09
3126 3739 3.440522 GGCTTCAGTTCCCTTACATGTTC 59.559 47.826 2.30 0.00 0.00 3.18
3133 3746 0.991920 CCCAGGCTTCAGTTCCCTTA 59.008 55.000 0.00 0.00 0.00 2.69
3138 3751 1.528129 CAACTCCCAGGCTTCAGTTC 58.472 55.000 0.54 0.00 0.00 3.01
3140 3753 0.768221 TCCAACTCCCAGGCTTCAGT 60.768 55.000 0.00 0.00 0.00 3.41
3141 3754 0.035630 CTCCAACTCCCAGGCTTCAG 60.036 60.000 0.00 0.00 0.00 3.02
3142 3755 0.768221 ACTCCAACTCCCAGGCTTCA 60.768 55.000 0.00 0.00 0.00 3.02
3143 3756 0.322008 CACTCCAACTCCCAGGCTTC 60.322 60.000 0.00 0.00 0.00 3.86
3144 3757 1.062488 ACACTCCAACTCCCAGGCTT 61.062 55.000 0.00 0.00 0.00 4.35
3145 3758 1.462238 ACACTCCAACTCCCAGGCT 60.462 57.895 0.00 0.00 0.00 4.58
3146 3759 1.003233 GACACTCCAACTCCCAGGC 60.003 63.158 0.00 0.00 0.00 4.85
3147 3760 0.987294 ATGACACTCCAACTCCCAGG 59.013 55.000 0.00 0.00 0.00 4.45
3148 3761 1.947678 GCATGACACTCCAACTCCCAG 60.948 57.143 0.00 0.00 0.00 4.45
3149 3762 0.036732 GCATGACACTCCAACTCCCA 59.963 55.000 0.00 0.00 0.00 4.37
3150 3763 0.036732 TGCATGACACTCCAACTCCC 59.963 55.000 0.00 0.00 0.00 4.30
3151 3764 1.160137 GTGCATGACACTCCAACTCC 58.840 55.000 11.51 0.00 46.41 3.85
3169 3782 6.026998 TGCCCTTTTTGCATCAAGGATTGT 62.027 41.667 21.06 0.00 42.11 2.71
3170 3783 3.557475 TGCCCTTTTTGCATCAAGGATTG 60.557 43.478 21.06 9.36 42.11 2.67
3172 3785 2.027837 GTGCCCTTTTTGCATCAAGGAT 60.028 45.455 21.06 0.00 42.11 3.24
3206 3865 7.936584 ACAAAACATATCAAAAACGAAGAGGA 58.063 30.769 0.00 0.00 0.00 3.71
3273 3936 0.669625 ACCGCCGTTTACAGAAGAGC 60.670 55.000 0.00 0.00 0.00 4.09
3299 3962 3.500982 CCCGTGCACATAATCAAACAAG 58.499 45.455 18.64 0.00 0.00 3.16
3306 3972 1.101049 CCCACCCCGTGCACATAATC 61.101 60.000 18.64 0.00 31.34 1.75
3310 3976 2.837031 GATTCCCACCCCGTGCACAT 62.837 60.000 18.64 0.00 31.34 3.21
3323 3989 1.646189 GCGACTGTCAAGAGATTCCC 58.354 55.000 8.73 0.00 0.00 3.97
3409 4078 3.975083 CTGCGCCGCGTACCTAACA 62.975 63.158 15.34 0.63 0.00 2.41
3428 4097 0.396417 AGTAGGCGAGCACTCAGGAT 60.396 55.000 0.00 0.00 0.00 3.24
3432 4101 1.304134 TCCAGTAGGCGAGCACTCA 60.304 57.895 0.00 0.00 33.74 3.41
3448 4117 2.678336 GTTGGAGATGAAATGGTCGTCC 59.322 50.000 0.00 0.00 42.51 4.79
3473 4142 7.461749 TCCAAAAGACAGGACAGAAATATCTT 58.538 34.615 0.00 0.00 32.03 2.40
3598 4268 1.472480 CCCGAAAATGCAACCTAGTGG 59.528 52.381 0.00 0.00 39.83 4.00
3600 4270 2.433436 GACCCGAAAATGCAACCTAGT 58.567 47.619 0.00 0.00 0.00 2.57
3601 4271 1.396996 CGACCCGAAAATGCAACCTAG 59.603 52.381 0.00 0.00 0.00 3.02
3602 4272 1.270947 ACGACCCGAAAATGCAACCTA 60.271 47.619 0.00 0.00 0.00 3.08
3652 4322 4.409570 CATCAGAAAACGGCTGAAAGATG 58.590 43.478 0.00 0.48 44.71 2.90
3708 4378 2.046892 CAAGGAGGCGTGAGTGGG 60.047 66.667 0.00 0.00 0.00 4.61
3797 4467 0.101040 GCAAATATCTTGGCAGCGCA 59.899 50.000 11.47 0.00 31.06 6.09
3842 4512 3.056035 AGAGTGCTAGGAAAAACTACCCG 60.056 47.826 0.00 0.00 0.00 5.28
3853 4523 6.293955 GCACACATTTTAAAAGAGTGCTAGGA 60.294 38.462 28.96 0.00 45.24 2.94
3854 4524 5.858581 GCACACATTTTAAAAGAGTGCTAGG 59.141 40.000 28.96 19.52 45.24 3.02
3855 4525 5.565259 CGCACACATTTTAAAAGAGTGCTAG 59.435 40.000 30.72 22.30 46.16 3.42
3954 6386 0.667792 GCTTCAGGGTCACGACTCAC 60.668 60.000 0.00 0.00 33.19 3.51
3955 6387 1.666011 GCTTCAGGGTCACGACTCA 59.334 57.895 0.00 0.00 33.19 3.41
3956 6388 1.079750 GGCTTCAGGGTCACGACTC 60.080 63.158 0.00 0.00 0.00 3.36
3957 6389 0.251653 TAGGCTTCAGGGTCACGACT 60.252 55.000 0.00 0.00 0.00 4.18
3958 6390 0.108756 GTAGGCTTCAGGGTCACGAC 60.109 60.000 0.00 0.00 0.00 4.34
3959 6391 1.592400 CGTAGGCTTCAGGGTCACGA 61.592 60.000 0.00 0.00 0.00 4.35
3961 6393 1.448013 GCGTAGGCTTCAGGGTCAC 60.448 63.158 0.00 0.00 35.83 3.67
3965 6397 1.079405 TTTCGCGTAGGCTTCAGGG 60.079 57.895 5.77 0.00 36.88 4.45
3993 6825 1.204786 TCCACCCCACCATCGTGATT 61.205 55.000 0.00 0.00 43.14 2.57
4006 6838 1.040646 TAGCATCAGATCGTCCACCC 58.959 55.000 0.00 0.00 0.00 4.61
4007 6839 2.297315 TGATAGCATCAGATCGTCCACC 59.703 50.000 0.00 0.00 33.59 4.61
4027 6859 7.976734 TGGTGCCCGTAAAAGAATAATTAAATG 59.023 33.333 0.00 0.00 0.00 2.32
4028 6860 8.068892 TGGTGCCCGTAAAAGAATAATTAAAT 57.931 30.769 0.00 0.00 0.00 1.40
4029 6861 7.463961 TGGTGCCCGTAAAAGAATAATTAAA 57.536 32.000 0.00 0.00 0.00 1.52
4030 6862 7.416890 CCATGGTGCCCGTAAAAGAATAATTAA 60.417 37.037 2.57 0.00 0.00 1.40
4031 6863 6.039941 CCATGGTGCCCGTAAAAGAATAATTA 59.960 38.462 2.57 0.00 0.00 1.40
4032 6864 5.163457 CCATGGTGCCCGTAAAAGAATAATT 60.163 40.000 2.57 0.00 0.00 1.40
4033 6865 4.340950 CCATGGTGCCCGTAAAAGAATAAT 59.659 41.667 2.57 0.00 0.00 1.28
4034 6866 3.697045 CCATGGTGCCCGTAAAAGAATAA 59.303 43.478 2.57 0.00 0.00 1.40
4035 6867 3.283751 CCATGGTGCCCGTAAAAGAATA 58.716 45.455 2.57 0.00 0.00 1.75
4036 6868 2.099405 CCATGGTGCCCGTAAAAGAAT 58.901 47.619 2.57 0.00 0.00 2.40
4039 6871 0.525761 CACCATGGTGCCCGTAAAAG 59.474 55.000 31.13 4.47 39.39 2.27
4064 6896 1.343142 GAAAATGGTTTGGGCCGACTT 59.657 47.619 0.00 0.00 0.00 3.01
4065 6897 0.966179 GAAAATGGTTTGGGCCGACT 59.034 50.000 0.00 0.00 0.00 4.18
4066 6898 0.676736 TGAAAATGGTTTGGGCCGAC 59.323 50.000 0.00 0.00 0.00 4.79
4067 6899 1.638529 ATGAAAATGGTTTGGGCCGA 58.361 45.000 0.00 0.00 0.00 5.54
4068 6900 2.470983 AATGAAAATGGTTTGGGCCG 57.529 45.000 0.00 0.00 0.00 6.13
4069 6901 4.397420 AGAAAATGAAAATGGTTTGGGCC 58.603 39.130 0.00 0.00 0.00 5.80
4070 6902 7.503521 TTTAGAAAATGAAAATGGTTTGGGC 57.496 32.000 0.00 0.00 0.00 5.36
4071 6903 9.336171 TCTTTTAGAAAATGAAAATGGTTTGGG 57.664 29.630 0.00 0.00 0.00 4.12
4080 6912 8.977505 CGCCTTTCATCTTTTAGAAAATGAAAA 58.022 29.630 8.37 0.00 36.88 2.29
4081 6913 8.356657 TCGCCTTTCATCTTTTAGAAAATGAAA 58.643 29.630 7.14 7.14 35.87 2.69
4082 6914 7.881142 TCGCCTTTCATCTTTTAGAAAATGAA 58.119 30.769 0.00 0.00 33.75 2.57
4083 6915 7.447374 TCGCCTTTCATCTTTTAGAAAATGA 57.553 32.000 0.00 0.00 33.75 2.57
4084 6916 9.226345 GTATCGCCTTTCATCTTTTAGAAAATG 57.774 33.333 0.00 0.00 33.75 2.32
4085 6917 8.956426 TGTATCGCCTTTCATCTTTTAGAAAAT 58.044 29.630 0.00 0.00 33.75 1.82
4086 6918 8.330466 TGTATCGCCTTTCATCTTTTAGAAAA 57.670 30.769 0.00 0.00 33.75 2.29
4087 6919 7.915293 TGTATCGCCTTTCATCTTTTAGAAA 57.085 32.000 0.00 0.00 33.17 2.52
4088 6920 7.915293 TTGTATCGCCTTTCATCTTTTAGAA 57.085 32.000 0.00 0.00 0.00 2.10
4089 6921 7.915293 TTTGTATCGCCTTTCATCTTTTAGA 57.085 32.000 0.00 0.00 0.00 2.10
4090 6922 8.020819 TGTTTTGTATCGCCTTTCATCTTTTAG 58.979 33.333 0.00 0.00 0.00 1.85
4091 6923 7.877003 TGTTTTGTATCGCCTTTCATCTTTTA 58.123 30.769 0.00 0.00 0.00 1.52
4092 6924 6.744112 TGTTTTGTATCGCCTTTCATCTTTT 58.256 32.000 0.00 0.00 0.00 2.27
4093 6925 6.325919 TGTTTTGTATCGCCTTTCATCTTT 57.674 33.333 0.00 0.00 0.00 2.52
4094 6926 5.957842 TGTTTTGTATCGCCTTTCATCTT 57.042 34.783 0.00 0.00 0.00 2.40
4095 6927 5.616866 CGTTGTTTTGTATCGCCTTTCATCT 60.617 40.000 0.00 0.00 0.00 2.90
4096 6928 4.553429 CGTTGTTTTGTATCGCCTTTCATC 59.447 41.667 0.00 0.00 0.00 2.92
4097 6929 4.472286 CGTTGTTTTGTATCGCCTTTCAT 58.528 39.130 0.00 0.00 0.00 2.57
4098 6930 3.304123 CCGTTGTTTTGTATCGCCTTTCA 60.304 43.478 0.00 0.00 0.00 2.69
4099 6931 3.231160 CCGTTGTTTTGTATCGCCTTTC 58.769 45.455 0.00 0.00 0.00 2.62
4100 6932 2.606065 GCCGTTGTTTTGTATCGCCTTT 60.606 45.455 0.00 0.00 0.00 3.11
4101 6933 1.068816 GCCGTTGTTTTGTATCGCCTT 60.069 47.619 0.00 0.00 0.00 4.35
4102 6934 0.519961 GCCGTTGTTTTGTATCGCCT 59.480 50.000 0.00 0.00 0.00 5.52
4103 6935 0.519961 AGCCGTTGTTTTGTATCGCC 59.480 50.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.