Multiple sequence alignment - TraesCS2A01G156300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G156300 chr2A 100.000 3370 0 0 1 3370 103114139 103110770 0.000000e+00 6224.0
1 TraesCS2A01G156300 chr2A 84.410 1084 82 43 937 1979 103140853 103139816 0.000000e+00 985.0
2 TraesCS2A01G156300 chr2B 89.914 1279 81 25 846 2098 156607201 156605945 0.000000e+00 1604.0
3 TraesCS2A01G156300 chr2B 85.885 921 69 38 937 1845 157041849 157040978 0.000000e+00 924.0
4 TraesCS2A01G156300 chr2B 80.183 767 129 16 2413 3171 156605600 156604849 1.370000e-153 553.0
5 TraesCS2A01G156300 chr2B 93.939 165 7 3 2205 2366 156605842 156605678 2.600000e-61 246.0
6 TraesCS2A01G156300 chr2B 85.135 148 14 4 2205 2344 157040533 157040386 9.750000e-31 145.0
7 TraesCS2A01G156300 chr2B 95.238 42 1 1 2160 2200 156605931 156605890 7.800000e-07 65.8
8 TraesCS2A01G156300 chr2D 90.851 940 62 9 846 1771 106650703 106649774 0.000000e+00 1238.0
9 TraesCS2A01G156300 chr2D 86.117 922 67 36 937 1845 106870894 106870021 0.000000e+00 937.0
10 TraesCS2A01G156300 chr2D 82.569 981 122 29 2205 3171 106649348 106648403 0.000000e+00 819.0
11 TraesCS2A01G156300 chr2D 92.462 398 10 8 1816 2200 106649774 106649384 4.910000e-153 551.0
12 TraesCS2A01G156300 chr2D 91.129 124 8 3 1860 1982 106869968 106869847 7.480000e-37 165.0
13 TraesCS2A01G156300 chr5D 92.807 848 55 5 4 847 325473958 325474803 0.000000e+00 1223.0
14 TraesCS2A01G156300 chr5D 92.226 849 56 7 4 847 23656526 23657369 0.000000e+00 1194.0
15 TraesCS2A01G156300 chr1D 91.111 855 64 8 4 847 361099852 361098999 0.000000e+00 1147.0
16 TraesCS2A01G156300 chr1D 87.907 860 86 12 4 851 320980887 320980034 0.000000e+00 996.0
17 TraesCS2A01G156300 chr3D 90.973 853 70 5 4 849 18788666 18787814 0.000000e+00 1142.0
18 TraesCS2A01G156300 chr3D 88.642 854 81 8 4 847 556937610 556936763 0.000000e+00 1026.0
19 TraesCS2A01G156300 chr4A 90.909 825 66 6 32 849 155266969 155267791 0.000000e+00 1099.0
20 TraesCS2A01G156300 chr7D 89.578 854 70 11 4 847 349949144 349949988 0.000000e+00 1066.0
21 TraesCS2A01G156300 chr5A 89.059 850 83 6 4 847 464512359 464513204 0.000000e+00 1046.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G156300 chr2A 103110770 103114139 3369 True 6224.000000 6224 100.000000 1 3370 1 chr2A.!!$R1 3369
1 TraesCS2A01G156300 chr2A 103139816 103140853 1037 True 985.000000 985 84.410000 937 1979 1 chr2A.!!$R2 1042
2 TraesCS2A01G156300 chr2B 156604849 156607201 2352 True 617.200000 1604 89.818500 846 3171 4 chr2B.!!$R1 2325
3 TraesCS2A01G156300 chr2B 157040386 157041849 1463 True 534.500000 924 85.510000 937 2344 2 chr2B.!!$R2 1407
4 TraesCS2A01G156300 chr2D 106648403 106650703 2300 True 869.333333 1238 88.627333 846 3171 3 chr2D.!!$R1 2325
5 TraesCS2A01G156300 chr2D 106869847 106870894 1047 True 551.000000 937 88.623000 937 1982 2 chr2D.!!$R2 1045
6 TraesCS2A01G156300 chr5D 325473958 325474803 845 False 1223.000000 1223 92.807000 4 847 1 chr5D.!!$F2 843
7 TraesCS2A01G156300 chr5D 23656526 23657369 843 False 1194.000000 1194 92.226000 4 847 1 chr5D.!!$F1 843
8 TraesCS2A01G156300 chr1D 361098999 361099852 853 True 1147.000000 1147 91.111000 4 847 1 chr1D.!!$R2 843
9 TraesCS2A01G156300 chr1D 320980034 320980887 853 True 996.000000 996 87.907000 4 851 1 chr1D.!!$R1 847
10 TraesCS2A01G156300 chr3D 18787814 18788666 852 True 1142.000000 1142 90.973000 4 849 1 chr3D.!!$R1 845
11 TraesCS2A01G156300 chr3D 556936763 556937610 847 True 1026.000000 1026 88.642000 4 847 1 chr3D.!!$R2 843
12 TraesCS2A01G156300 chr4A 155266969 155267791 822 False 1099.000000 1099 90.909000 32 849 1 chr4A.!!$F1 817
13 TraesCS2A01G156300 chr7D 349949144 349949988 844 False 1066.000000 1066 89.578000 4 847 1 chr7D.!!$F1 843
14 TraesCS2A01G156300 chr5A 464512359 464513204 845 False 1046.000000 1046 89.059000 4 847 1 chr5A.!!$F1 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 850 0.177141 CCCCAGACGGCGATTTTAGA 59.823 55.0 16.62 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2726 3029 0.033601 ATTGGGGCGGCATAAGTTCA 60.034 50.0 12.47 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.323477 TGACAAGGGGGTTCGGCG 62.323 66.667 0.00 0.00 0.00 6.46
88 92 3.503363 GCGCTGCTCGGCTTCAAT 61.503 61.111 0.00 0.00 38.94 2.57
196 203 4.459089 GCTCCTCCTCCGCGCTTT 62.459 66.667 5.56 0.00 0.00 3.51
203 210 2.680913 CCTCCGCGCTTTGTCAAGG 61.681 63.158 5.56 0.00 0.00 3.61
208 215 0.869454 CGCGCTTTGTCAAGGCAAAA 60.869 50.000 18.55 0.00 37.82 2.44
318 325 2.745884 TCTTGAATGGGCACGCCG 60.746 61.111 1.14 0.00 36.85 6.46
510 538 1.219393 GCGTCAAGGAGGAGAAGGG 59.781 63.158 0.00 0.00 0.00 3.95
512 540 1.544825 CGTCAAGGAGGAGAAGGGCA 61.545 60.000 0.00 0.00 0.00 5.36
560 591 2.433145 ACGACGGCGACTACTCGA 60.433 61.111 22.49 0.00 43.06 4.04
643 674 7.716799 TGAACTTTGTTGAAATATATGCCCT 57.283 32.000 0.00 0.00 0.00 5.19
689 721 1.421382 CCGAACTTCGCCGAACTTTA 58.579 50.000 5.61 0.00 38.82 1.85
695 727 1.125566 CTTCGCCGAACTTTACCGAAC 59.874 52.381 0.00 0.00 34.65 3.95
813 850 0.177141 CCCCAGACGGCGATTTTAGA 59.823 55.000 16.62 0.00 0.00 2.10
823 861 1.861971 CGATTTTAGACGCCCCCTAC 58.138 55.000 0.00 0.00 0.00 3.18
864 902 1.476891 TCTAACCATCACTCTCACGCC 59.523 52.381 0.00 0.00 0.00 5.68
865 903 1.478510 CTAACCATCACTCTCACGCCT 59.521 52.381 0.00 0.00 0.00 5.52
917 955 2.489275 CCGTGCCAAGTTGCCAACT 61.489 57.895 3.74 3.74 45.46 3.16
920 958 1.076412 TGCCAAGTTGCCAACTCCA 60.076 52.632 11.11 6.04 41.91 3.86
1042 1088 0.756294 TCCGTCTTCACACACACCAT 59.244 50.000 0.00 0.00 0.00 3.55
1043 1089 1.148310 CCGTCTTCACACACACCATC 58.852 55.000 0.00 0.00 0.00 3.51
1044 1090 0.784178 CGTCTTCACACACACCATCG 59.216 55.000 0.00 0.00 0.00 3.84
1045 1091 1.865865 GTCTTCACACACACCATCGT 58.134 50.000 0.00 0.00 0.00 3.73
1046 1092 2.210116 GTCTTCACACACACCATCGTT 58.790 47.619 0.00 0.00 0.00 3.85
1047 1093 2.221055 GTCTTCACACACACCATCGTTC 59.779 50.000 0.00 0.00 0.00 3.95
1048 1094 1.192312 CTTCACACACACCATCGTTCG 59.808 52.381 0.00 0.00 0.00 3.95
1110 1176 3.591835 CCGGCGCCAACTGTTTGT 61.592 61.111 28.98 0.00 0.00 2.83
1121 1187 2.396590 ACTGTTTGTTCGACACCAGT 57.603 45.000 10.79 10.79 36.37 4.00
1129 1195 2.223735 TGTTCGACACCAGTGAACTCTC 60.224 50.000 4.48 0.00 41.88 3.20
1470 1548 2.764128 GGATCGGGCTGGGAGTGA 60.764 66.667 0.00 0.00 0.00 3.41
1498 1576 2.048127 GGACGGTCTGAGTGCCAC 60.048 66.667 8.23 0.00 0.00 5.01
1499 1577 2.430921 GACGGTCTGAGTGCCACG 60.431 66.667 0.00 0.00 0.00 4.94
1734 1812 1.202604 TGAACCTGTTCCAGTTCGTCC 60.203 52.381 7.51 0.00 38.77 4.79
1794 1872 2.761071 GAGGCAGCCTCTCTTTTCG 58.239 57.895 31.54 0.00 46.41 3.46
1795 1873 0.036858 GAGGCAGCCTCTCTTTTCGT 60.037 55.000 31.54 0.00 46.41 3.85
1796 1874 0.398318 AGGCAGCCTCTCTTTTCGTT 59.602 50.000 8.70 0.00 0.00 3.85
1797 1875 0.799393 GGCAGCCTCTCTTTTCGTTC 59.201 55.000 3.29 0.00 0.00 3.95
1798 1876 0.799393 GCAGCCTCTCTTTTCGTTCC 59.201 55.000 0.00 0.00 0.00 3.62
1799 1877 1.071605 CAGCCTCTCTTTTCGTTCCG 58.928 55.000 0.00 0.00 0.00 4.30
1800 1878 0.037232 AGCCTCTCTTTTCGTTCCGG 60.037 55.000 0.00 0.00 0.00 5.14
1801 1879 0.320508 GCCTCTCTTTTCGTTCCGGT 60.321 55.000 0.00 0.00 0.00 5.28
1802 1880 1.429463 CCTCTCTTTTCGTTCCGGTG 58.571 55.000 0.00 0.00 0.00 4.94
1803 1881 0.790814 CTCTCTTTTCGTTCCGGTGC 59.209 55.000 0.00 0.00 0.00 5.01
1804 1882 0.105224 TCTCTTTTCGTTCCGGTGCA 59.895 50.000 0.00 0.00 0.00 4.57
1805 1883 0.234884 CTCTTTTCGTTCCGGTGCAC 59.765 55.000 8.80 8.80 0.00 4.57
1806 1884 1.083015 CTTTTCGTTCCGGTGCACG 60.083 57.895 11.45 14.77 43.80 5.34
1872 2028 2.306847 TGTCCTGTTTTTCCTTCTGCC 58.693 47.619 0.00 0.00 0.00 4.85
1879 2035 1.503818 TTTTCCTTCTGCCACGCGAC 61.504 55.000 15.93 1.62 0.00 5.19
1976 2137 9.683069 GATTTCGCCAATTGATCATAACTAAAT 57.317 29.630 7.12 0.00 0.00 1.40
1977 2138 9.683069 ATTTCGCCAATTGATCATAACTAAATC 57.317 29.630 7.12 0.00 0.00 2.17
2034 2212 3.064271 TGGTTTGCTTCACTTTCACGTAC 59.936 43.478 0.00 0.00 0.00 3.67
2051 2229 4.079253 ACGTACCAATGATCTTGCCTTTT 58.921 39.130 0.00 0.00 0.00 2.27
2113 2309 6.183360 CGATAAATCAAGCCTGACAGTTCAAT 60.183 38.462 0.93 0.00 33.30 2.57
2153 2357 1.917872 TATTTGGGTCCCTGTGCAAC 58.082 50.000 10.00 0.00 37.35 4.17
2159 2363 0.036765 GGTCCCTGTGCAACACGATA 60.037 55.000 0.00 0.00 45.67 2.92
2160 2364 1.076332 GTCCCTGTGCAACACGATAC 58.924 55.000 0.00 0.00 45.67 2.24
2161 2365 0.682292 TCCCTGTGCAACACGATACA 59.318 50.000 0.00 0.00 45.67 2.29
2162 2366 1.070914 TCCCTGTGCAACACGATACAA 59.929 47.619 0.00 0.00 45.67 2.41
2200 2421 1.676678 CCCGGCGAATCTCTTCCTCA 61.677 60.000 9.30 0.00 0.00 3.86
2202 2423 0.741326 CGGCGAATCTCTTCCTCAGA 59.259 55.000 0.00 0.00 0.00 3.27
2222 2486 1.440145 GCAGGCTGCTATTTCGTCCC 61.440 60.000 31.37 0.00 40.96 4.46
2352 2625 4.196778 TGTGGAAGCACCCCGCAA 62.197 61.111 3.31 0.00 46.13 4.85
2381 2654 5.381184 AAAACAAGCCATTAAAAAGGGGT 57.619 34.783 0.00 0.00 0.00 4.95
2382 2655 6.502074 AAAACAAGCCATTAAAAAGGGGTA 57.498 33.333 0.00 0.00 0.00 3.69
2383 2656 6.696042 AAACAAGCCATTAAAAAGGGGTAT 57.304 33.333 0.00 0.00 0.00 2.73
2384 2657 6.696042 AACAAGCCATTAAAAAGGGGTATT 57.304 33.333 0.00 0.00 0.00 1.89
2385 2658 7.800300 AACAAGCCATTAAAAAGGGGTATTA 57.200 32.000 0.00 0.00 0.00 0.98
2387 2660 7.847096 ACAAGCCATTAAAAAGGGGTATTAAG 58.153 34.615 0.00 0.00 0.00 1.85
2388 2661 6.479972 AGCCATTAAAAAGGGGTATTAAGC 57.520 37.500 0.00 0.00 0.00 3.09
2391 2664 6.537301 GCCATTAAAAAGGGGTATTAAGCAAC 59.463 38.462 0.00 0.00 0.00 4.17
2392 2665 7.045416 CCATTAAAAAGGGGTATTAAGCAACC 58.955 38.462 0.00 0.00 34.85 3.77
2393 2666 4.794278 AAAAAGGGGTATTAAGCAACCG 57.206 40.909 0.00 0.00 36.57 4.44
2394 2667 1.758936 AAGGGGTATTAAGCAACCGC 58.241 50.000 11.40 11.40 46.23 5.68
2431 2733 5.796502 ATTAAGAACATCCTCCCCAAAGA 57.203 39.130 0.00 0.00 0.00 2.52
2433 2735 4.469469 AAGAACATCCTCCCCAAAGAAA 57.531 40.909 0.00 0.00 0.00 2.52
2436 2738 4.293368 AGAACATCCTCCCCAAAGAAAGAT 59.707 41.667 0.00 0.00 0.00 2.40
2442 2744 2.892852 CTCCCCAAAGAAAGATTGCACA 59.107 45.455 0.00 0.00 0.00 4.57
2443 2745 3.303938 TCCCCAAAGAAAGATTGCACAA 58.696 40.909 0.00 0.00 0.00 3.33
2447 2749 5.058490 CCCAAAGAAAGATTGCACAACATT 58.942 37.500 0.00 0.00 0.00 2.71
2450 2752 7.095523 CCCAAAGAAAGATTGCACAACATTAAG 60.096 37.037 0.00 0.00 0.00 1.85
2452 2754 5.473039 AGAAAGATTGCACAACATTAAGGC 58.527 37.500 0.00 0.00 0.00 4.35
2494 2796 6.679327 ATGAAAAGGCTTACTCGGTTTATC 57.321 37.500 0.00 0.00 0.00 1.75
2512 2814 2.417339 TCGAGTCAAAACAGGACGAG 57.583 50.000 0.00 0.00 40.20 4.18
2525 2827 3.069729 ACAGGACGAGAAGCTAAACAACT 59.930 43.478 0.00 0.00 0.00 3.16
2557 2859 6.515272 AACTAGGCCTAAAACATCACAATG 57.485 37.500 14.85 0.00 38.93 2.82
2562 2864 5.599656 AGGCCTAAAACATCACAATGCATAT 59.400 36.000 1.29 0.00 36.26 1.78
2566 2868 9.480053 GCCTAAAACATCACAATGCATATAAAT 57.520 29.630 0.00 0.00 36.26 1.40
2583 2886 7.114811 GCATATAAATATCAAAAGGCCAACACG 59.885 37.037 5.01 0.00 0.00 4.49
2597 2900 1.768684 AACACGCCCATGTCACTCCT 61.769 55.000 0.00 0.00 30.55 3.69
2601 2904 2.976490 GCCCATGTCACTCCTGGCT 61.976 63.158 0.00 0.00 31.75 4.75
2615 2918 3.518998 GGCTAGGCACTCGAGCGA 61.519 66.667 13.61 0.00 43.72 4.93
2631 2934 2.202756 GACTTCGCCGCTACCAGG 60.203 66.667 0.00 0.00 0.00 4.45
2632 2935 2.995574 ACTTCGCCGCTACCAGGT 60.996 61.111 0.00 0.00 0.00 4.00
2633 2936 2.509336 CTTCGCCGCTACCAGGTG 60.509 66.667 0.76 0.00 40.44 4.00
2638 2941 4.015406 CCGCTACCAGGTGGCACA 62.015 66.667 26.26 0.00 40.02 4.57
2696 2999 0.319211 TGTTTGCGAACCTCGACGAT 60.319 50.000 14.35 0.00 43.74 3.73
2699 3002 0.179156 TTGCGAACCTCGACGATACC 60.179 55.000 0.00 0.00 43.74 2.73
2740 3043 2.596904 TAGAGTGAACTTATGCCGCC 57.403 50.000 0.00 0.00 0.00 6.13
2743 3046 1.377987 GTGAACTTATGCCGCCCCA 60.378 57.895 0.00 0.00 0.00 4.96
2763 3066 3.008266 CCAATCCTTCAAGGTTGGCAAAT 59.992 43.478 19.07 0.00 38.63 2.32
2764 3067 4.222588 CCAATCCTTCAAGGTTGGCAAATA 59.777 41.667 19.07 0.00 38.63 1.40
2770 3073 6.723977 TCCTTCAAGGTTGGCAAATATAACTT 59.276 34.615 2.50 0.00 36.53 2.66
2773 3076 5.480073 TCAAGGTTGGCAAATATAACTTGCT 59.520 36.000 17.61 1.24 46.74 3.91
2779 3082 4.457603 TGGCAAATATAACTTGCTTGACGT 59.542 37.500 17.61 0.00 46.74 4.34
2789 3092 0.465460 TGCTTGACGTTCCTTGCCTT 60.465 50.000 0.00 0.00 0.00 4.35
2794 3097 0.238553 GACGTTCCTTGCCTTCTTGC 59.761 55.000 0.00 0.00 0.00 4.01
2805 3108 0.038744 CCTTCTTGCATGTGGAGGGT 59.961 55.000 0.00 0.00 0.00 4.34
2840 3143 2.762327 TCACAGAGATGTCATGCTAGCA 59.238 45.455 21.85 21.85 0.00 3.49
2842 3145 2.765135 ACAGAGATGTCATGCTAGCAGT 59.235 45.455 23.89 8.29 0.00 4.40
2844 3147 3.029570 AGAGATGTCATGCTAGCAGTCA 58.970 45.455 23.89 19.96 0.00 3.41
2850 3153 0.108662 CATGCTAGCAGTCACCGACA 60.109 55.000 23.89 0.00 34.60 4.35
2859 3162 2.022129 GTCACCGACAACCTCTGCG 61.022 63.158 0.00 0.00 32.09 5.18
2875 3178 2.279073 CGAGCCCCAGTCCCTCTA 59.721 66.667 0.00 0.00 0.00 2.43
2892 3195 3.390639 CCTCTAGCTGAATCCAACTCCAT 59.609 47.826 0.00 0.00 0.00 3.41
2896 3199 2.306805 AGCTGAATCCAACTCCATGACA 59.693 45.455 0.00 0.00 0.00 3.58
2898 3201 3.698040 GCTGAATCCAACTCCATGACAAT 59.302 43.478 0.00 0.00 0.00 2.71
2900 3203 4.665451 TGAATCCAACTCCATGACAATGT 58.335 39.130 0.00 0.00 31.27 2.71
2910 3213 1.747355 CATGACAATGTCCCCAAGAGC 59.253 52.381 11.24 0.00 0.00 4.09
2939 3242 5.356751 TGATGCCGAGCAAAGTTAATAACAT 59.643 36.000 5.89 0.00 43.62 2.71
2940 3243 5.229921 TGCCGAGCAAAGTTAATAACATC 57.770 39.130 5.89 0.00 34.76 3.06
2947 3250 5.590259 AGCAAAGTTAATAACATCGCCATCT 59.410 36.000 5.89 0.00 0.00 2.90
2956 3259 2.477825 ACATCGCCATCTTTCGATCTG 58.522 47.619 0.00 0.00 42.73 2.90
2994 3297 5.898174 GGGTTTCCCTAAAAATATGTTCGG 58.102 41.667 0.00 0.00 41.34 4.30
3006 3314 2.039137 GTTCGGAGGGGGAGGACT 59.961 66.667 0.00 0.00 0.00 3.85
3061 3369 0.396811 GTAGGCACCACCACTGACTT 59.603 55.000 0.00 0.00 43.14 3.01
3063 3371 1.961277 GGCACCACCACTGACTTCG 60.961 63.158 0.00 0.00 38.86 3.79
3096 3404 3.147595 TCGGAGCTATGCTGGCGT 61.148 61.111 0.00 0.00 39.88 5.68
3098 3406 2.501128 GGAGCTATGCTGGCGTCA 59.499 61.111 0.00 0.00 39.88 4.35
3104 3412 0.812811 CTATGCTGGCGTCAGTGCAT 60.813 55.000 19.84 19.35 46.22 3.96
3113 3421 1.372582 CGTCAGTGCATACAAGGCAT 58.627 50.000 0.00 0.00 44.11 4.40
3124 3432 4.039730 GCATACAAGGCATAAGAGAGGAGA 59.960 45.833 0.00 0.00 0.00 3.71
3140 3448 0.103937 GAGAGGAAGATGGCAGGTCG 59.896 60.000 0.00 0.00 0.00 4.79
3142 3450 1.306141 AGGAAGATGGCAGGTCGGA 60.306 57.895 0.00 0.00 0.00 4.55
3150 3458 1.079405 GGCAGGTCGGACGATTTGA 60.079 57.895 1.43 0.00 0.00 2.69
3165 3473 4.766891 ACGATTTGAAGTGATTTGGGATGT 59.233 37.500 0.00 0.00 0.00 3.06
3168 3476 5.452078 TTTGAAGTGATTTGGGATGTGTC 57.548 39.130 0.00 0.00 0.00 3.67
3171 3479 3.077484 AGTGATTTGGGATGTGTCTGG 57.923 47.619 0.00 0.00 0.00 3.86
3172 3480 1.474077 GTGATTTGGGATGTGTCTGGC 59.526 52.381 0.00 0.00 0.00 4.85
3173 3481 1.106285 GATTTGGGATGTGTCTGGCC 58.894 55.000 0.00 0.00 0.00 5.36
3174 3482 0.706433 ATTTGGGATGTGTCTGGCCT 59.294 50.000 3.32 0.00 0.00 5.19
3175 3483 0.482446 TTTGGGATGTGTCTGGCCTT 59.518 50.000 3.32 0.00 0.00 4.35
3176 3484 0.482446 TTGGGATGTGTCTGGCCTTT 59.518 50.000 3.32 0.00 0.00 3.11
3177 3485 0.038166 TGGGATGTGTCTGGCCTTTC 59.962 55.000 3.32 0.00 0.00 2.62
3178 3486 0.681243 GGGATGTGTCTGGCCTTTCC 60.681 60.000 3.32 0.00 0.00 3.13
3179 3487 0.038166 GGATGTGTCTGGCCTTTCCA 59.962 55.000 3.32 0.00 44.18 3.53
3180 3488 1.341383 GGATGTGTCTGGCCTTTCCAT 60.341 52.381 3.32 0.00 45.50 3.41
3181 3489 2.092429 GGATGTGTCTGGCCTTTCCATA 60.092 50.000 3.32 0.00 45.50 2.74
3182 3490 3.435601 GGATGTGTCTGGCCTTTCCATAT 60.436 47.826 3.32 0.00 45.50 1.78
3183 3491 3.737559 TGTGTCTGGCCTTTCCATATT 57.262 42.857 3.32 0.00 45.50 1.28
3184 3492 4.046286 TGTGTCTGGCCTTTCCATATTT 57.954 40.909 3.32 0.00 45.50 1.40
3185 3493 3.763360 TGTGTCTGGCCTTTCCATATTTG 59.237 43.478 3.32 0.00 45.50 2.32
3186 3494 2.760092 TGTCTGGCCTTTCCATATTTGC 59.240 45.455 3.32 0.00 45.50 3.68
3187 3495 2.101415 GTCTGGCCTTTCCATATTTGCC 59.899 50.000 3.32 0.00 45.50 4.52
3188 3496 1.413812 CTGGCCTTTCCATATTTGCCC 59.586 52.381 3.32 0.00 45.50 5.36
3189 3497 0.758734 GGCCTTTCCATATTTGCCCC 59.241 55.000 0.00 0.00 32.74 5.80
3190 3498 0.758734 GCCTTTCCATATTTGCCCCC 59.241 55.000 0.00 0.00 0.00 5.40
3191 3499 1.969240 GCCTTTCCATATTTGCCCCCA 60.969 52.381 0.00 0.00 0.00 4.96
3192 3500 1.762370 CCTTTCCATATTTGCCCCCAC 59.238 52.381 0.00 0.00 0.00 4.61
3193 3501 2.465813 CTTTCCATATTTGCCCCCACA 58.534 47.619 0.00 0.00 0.00 4.17
3194 3502 2.864885 TTCCATATTTGCCCCCACAT 57.135 45.000 0.00 0.00 0.00 3.21
3195 3503 3.981516 TTCCATATTTGCCCCCACATA 57.018 42.857 0.00 0.00 0.00 2.29
3196 3504 4.484026 TTCCATATTTGCCCCCACATAT 57.516 40.909 0.00 0.00 0.00 1.78
3197 3505 3.777087 TCCATATTTGCCCCCACATATG 58.223 45.455 0.00 0.00 39.85 1.78
3209 3517 2.411628 CACATATGGACCGGGTTTGA 57.588 50.000 6.32 0.00 0.00 2.69
3210 3518 2.717390 CACATATGGACCGGGTTTGAA 58.283 47.619 6.32 0.00 0.00 2.69
3211 3519 2.682856 CACATATGGACCGGGTTTGAAG 59.317 50.000 6.32 0.00 0.00 3.02
3212 3520 2.297701 CATATGGACCGGGTTTGAAGG 58.702 52.381 6.32 0.00 0.00 3.46
3213 3521 0.621609 TATGGACCGGGTTTGAAGGG 59.378 55.000 6.32 0.00 0.00 3.95
3214 3522 1.432023 ATGGACCGGGTTTGAAGGGT 61.432 55.000 6.32 0.00 34.94 4.34
3215 3523 1.602605 GGACCGGGTTTGAAGGGTG 60.603 63.158 6.32 0.00 31.66 4.61
3216 3524 1.149854 GACCGGGTTTGAAGGGTGT 59.850 57.895 6.32 0.00 31.66 4.16
3217 3525 0.887836 GACCGGGTTTGAAGGGTGTC 60.888 60.000 6.32 0.00 31.66 3.67
3218 3526 1.964373 CCGGGTTTGAAGGGTGTCG 60.964 63.158 0.00 0.00 0.00 4.35
3219 3527 1.964373 CGGGTTTGAAGGGTGTCGG 60.964 63.158 0.00 0.00 0.00 4.79
3220 3528 1.452801 GGGTTTGAAGGGTGTCGGA 59.547 57.895 0.00 0.00 0.00 4.55
3221 3529 0.887836 GGGTTTGAAGGGTGTCGGAC 60.888 60.000 0.00 0.00 0.00 4.79
3222 3530 0.179040 GGTTTGAAGGGTGTCGGACA 60.179 55.000 6.76 6.76 0.00 4.02
3223 3531 1.226746 GTTTGAAGGGTGTCGGACAG 58.773 55.000 11.83 0.00 0.00 3.51
3224 3532 0.834612 TTTGAAGGGTGTCGGACAGT 59.165 50.000 11.83 0.00 0.00 3.55
3225 3533 0.391597 TTGAAGGGTGTCGGACAGTC 59.608 55.000 11.83 6.95 0.00 3.51
3226 3534 1.292541 GAAGGGTGTCGGACAGTCC 59.707 63.158 11.83 15.52 0.00 3.85
3235 3543 4.058797 GGACAGTCCGGGTGTTTG 57.941 61.111 3.05 1.71 0.00 2.93
3236 3544 1.448497 GGACAGTCCGGGTGTTTGA 59.552 57.895 3.05 0.00 0.00 2.69
3237 3545 0.602905 GGACAGTCCGGGTGTTTGAG 60.603 60.000 3.05 0.00 0.00 3.02
3238 3546 0.106149 GACAGTCCGGGTGTTTGAGT 59.894 55.000 11.18 0.00 0.00 3.41
3239 3547 0.544697 ACAGTCCGGGTGTTTGAGTT 59.455 50.000 0.00 0.00 0.00 3.01
3240 3548 0.944386 CAGTCCGGGTGTTTGAGTTG 59.056 55.000 0.00 0.00 0.00 3.16
3241 3549 0.834612 AGTCCGGGTGTTTGAGTTGA 59.165 50.000 0.00 0.00 0.00 3.18
3242 3550 1.202651 AGTCCGGGTGTTTGAGTTGAG 60.203 52.381 0.00 0.00 0.00 3.02
3243 3551 0.834612 TCCGGGTGTTTGAGTTGAGT 59.165 50.000 0.00 0.00 0.00 3.41
3244 3552 2.040939 TCCGGGTGTTTGAGTTGAGTA 58.959 47.619 0.00 0.00 0.00 2.59
3245 3553 2.635915 TCCGGGTGTTTGAGTTGAGTAT 59.364 45.455 0.00 0.00 0.00 2.12
3246 3554 2.742053 CCGGGTGTTTGAGTTGAGTATG 59.258 50.000 0.00 0.00 0.00 2.39
3247 3555 3.399330 CGGGTGTTTGAGTTGAGTATGT 58.601 45.455 0.00 0.00 0.00 2.29
3248 3556 3.186409 CGGGTGTTTGAGTTGAGTATGTG 59.814 47.826 0.00 0.00 0.00 3.21
3249 3557 3.502211 GGGTGTTTGAGTTGAGTATGTGG 59.498 47.826 0.00 0.00 0.00 4.17
3250 3558 3.502211 GGTGTTTGAGTTGAGTATGTGGG 59.498 47.826 0.00 0.00 0.00 4.61
3251 3559 4.134563 GTGTTTGAGTTGAGTATGTGGGT 58.865 43.478 0.00 0.00 0.00 4.51
3252 3560 4.213482 GTGTTTGAGTTGAGTATGTGGGTC 59.787 45.833 0.00 0.00 0.00 4.46
3253 3561 3.695830 TTGAGTTGAGTATGTGGGTCC 57.304 47.619 0.00 0.00 0.00 4.46
3254 3562 1.548719 TGAGTTGAGTATGTGGGTCCG 59.451 52.381 0.00 0.00 0.00 4.79
3255 3563 0.902531 AGTTGAGTATGTGGGTCCGG 59.097 55.000 0.00 0.00 0.00 5.14
3256 3564 0.611714 GTTGAGTATGTGGGTCCGGT 59.388 55.000 0.00 0.00 0.00 5.28
3257 3565 1.002773 GTTGAGTATGTGGGTCCGGTT 59.997 52.381 0.00 0.00 0.00 4.44
3258 3566 2.234414 GTTGAGTATGTGGGTCCGGTTA 59.766 50.000 0.00 0.00 0.00 2.85
3259 3567 2.538222 TGAGTATGTGGGTCCGGTTAA 58.462 47.619 0.00 0.00 0.00 2.01
3260 3568 2.498481 TGAGTATGTGGGTCCGGTTAAG 59.502 50.000 0.00 0.00 0.00 1.85
3261 3569 2.498885 GAGTATGTGGGTCCGGTTAAGT 59.501 50.000 0.00 0.00 0.00 2.24
3262 3570 2.235402 AGTATGTGGGTCCGGTTAAGTG 59.765 50.000 0.00 0.00 0.00 3.16
3263 3571 0.326927 ATGTGGGTCCGGTTAAGTGG 59.673 55.000 0.00 0.00 0.00 4.00
3264 3572 1.673337 GTGGGTCCGGTTAAGTGGC 60.673 63.158 0.00 0.00 0.00 5.01
3265 3573 2.148052 TGGGTCCGGTTAAGTGGCA 61.148 57.895 0.00 0.00 0.00 4.92
3266 3574 1.073548 GGGTCCGGTTAAGTGGCAA 59.926 57.895 0.00 0.00 0.00 4.52
3267 3575 0.323087 GGGTCCGGTTAAGTGGCAAT 60.323 55.000 0.00 0.00 0.00 3.56
3268 3576 1.541379 GGTCCGGTTAAGTGGCAATT 58.459 50.000 5.23 5.23 0.00 2.32
3269 3577 1.890489 GGTCCGGTTAAGTGGCAATTT 59.110 47.619 5.17 0.00 0.00 1.82
3270 3578 2.094906 GGTCCGGTTAAGTGGCAATTTC 60.095 50.000 5.17 0.00 0.00 2.17
3271 3579 1.807742 TCCGGTTAAGTGGCAATTTCG 59.192 47.619 5.17 8.00 0.00 3.46
3272 3580 1.538075 CCGGTTAAGTGGCAATTTCGT 59.462 47.619 5.17 0.00 0.00 3.85
3273 3581 2.580589 CGGTTAAGTGGCAATTTCGTG 58.419 47.619 5.17 0.00 0.00 4.35
3274 3582 2.224549 CGGTTAAGTGGCAATTTCGTGA 59.775 45.455 5.17 0.00 0.00 4.35
3275 3583 3.561503 GGTTAAGTGGCAATTTCGTGAC 58.438 45.455 5.17 0.00 0.00 3.67
3276 3584 3.252458 GGTTAAGTGGCAATTTCGTGACT 59.748 43.478 5.17 0.00 0.00 3.41
3277 3585 4.261447 GGTTAAGTGGCAATTTCGTGACTT 60.261 41.667 5.17 0.00 0.00 3.01
3278 3586 3.354089 AAGTGGCAATTTCGTGACTTG 57.646 42.857 0.00 0.00 0.00 3.16
3279 3587 2.571212 AGTGGCAATTTCGTGACTTGA 58.429 42.857 0.00 0.00 0.00 3.02
3280 3588 3.149196 AGTGGCAATTTCGTGACTTGAT 58.851 40.909 0.00 0.00 0.00 2.57
3281 3589 4.323417 AGTGGCAATTTCGTGACTTGATA 58.677 39.130 0.00 0.00 0.00 2.15
3282 3590 4.393062 AGTGGCAATTTCGTGACTTGATAG 59.607 41.667 0.00 0.00 0.00 2.08
3283 3591 4.154195 GTGGCAATTTCGTGACTTGATAGT 59.846 41.667 0.00 0.00 37.31 2.12
3284 3592 5.350365 GTGGCAATTTCGTGACTTGATAGTA 59.650 40.000 0.00 0.00 33.84 1.82
3285 3593 5.935206 TGGCAATTTCGTGACTTGATAGTAA 59.065 36.000 0.00 0.00 33.84 2.24
3286 3594 6.597672 TGGCAATTTCGTGACTTGATAGTAAT 59.402 34.615 0.00 0.00 33.84 1.89
3287 3595 7.126398 GGCAATTTCGTGACTTGATAGTAATC 58.874 38.462 0.00 0.00 33.84 1.75
3288 3596 6.841286 GCAATTTCGTGACTTGATAGTAATCG 59.159 38.462 0.00 0.00 33.84 3.34
3289 3597 7.464178 GCAATTTCGTGACTTGATAGTAATCGT 60.464 37.037 0.00 0.00 33.84 3.73
3290 3598 9.016623 CAATTTCGTGACTTGATAGTAATCGTA 57.983 33.333 0.00 0.00 33.84 3.43
3291 3599 7.959718 TTTCGTGACTTGATAGTAATCGTAC 57.040 36.000 0.00 0.00 33.84 3.67
3292 3600 6.915544 TCGTGACTTGATAGTAATCGTACT 57.084 37.500 0.00 0.00 43.27 2.73
3293 3601 6.712549 TCGTGACTTGATAGTAATCGTACTG 58.287 40.000 0.00 0.00 40.89 2.74
3294 3602 6.314648 TCGTGACTTGATAGTAATCGTACTGT 59.685 38.462 0.00 0.00 40.89 3.55
3295 3603 6.628065 CGTGACTTGATAGTAATCGTACTGTC 59.372 42.308 4.28 4.28 44.57 3.51
3296 3604 6.911511 GTGACTTGATAGTAATCGTACTGTCC 59.088 42.308 7.81 0.00 44.02 4.02
3297 3605 6.057627 ACTTGATAGTAATCGTACTGTCCG 57.942 41.667 7.81 0.00 44.02 4.79
3298 3606 5.587844 ACTTGATAGTAATCGTACTGTCCGT 59.412 40.000 7.81 3.73 44.02 4.69
3299 3607 5.663795 TGATAGTAATCGTACTGTCCGTC 57.336 43.478 7.81 0.00 44.02 4.79
3300 3608 4.512944 TGATAGTAATCGTACTGTCCGTCC 59.487 45.833 7.81 0.00 44.02 4.79
3301 3609 1.667724 AGTAATCGTACTGTCCGTCCG 59.332 52.381 0.00 0.00 39.20 4.79
3302 3610 1.016627 TAATCGTACTGTCCGTCCGG 58.983 55.000 0.00 0.00 0.00 5.14
3303 3611 0.677731 AATCGTACTGTCCGTCCGGA 60.678 55.000 0.00 0.00 42.90 5.14
3304 3612 7.702636 TAGTAATCGTACTGTCCGTCCGGAT 62.703 48.000 7.81 0.00 42.51 4.18
3305 3613 7.702636 AGTAATCGTACTGTCCGTCCGGATA 62.703 48.000 7.81 8.39 39.20 2.59
3306 3614 8.911494 AGTAATCGTACTGTCCGTCCGGATAT 62.911 46.154 7.81 3.41 39.20 1.63
3313 3621 1.612676 TCCGTCCGGATATGTACAGG 58.387 55.000 7.81 1.69 39.76 4.00
3314 3622 1.143481 TCCGTCCGGATATGTACAGGA 59.857 52.381 7.81 4.19 39.76 3.86
3315 3623 1.540267 CCGTCCGGATATGTACAGGAG 59.460 57.143 7.81 0.00 37.50 3.69
3316 3624 2.501261 CGTCCGGATATGTACAGGAGA 58.499 52.381 7.81 0.00 32.89 3.71
3317 3625 3.082548 CGTCCGGATATGTACAGGAGAT 58.917 50.000 7.81 0.00 32.89 2.75
3318 3626 3.506455 CGTCCGGATATGTACAGGAGATT 59.494 47.826 7.81 0.00 32.89 2.40
3319 3627 4.022242 CGTCCGGATATGTACAGGAGATTT 60.022 45.833 7.81 0.00 32.89 2.17
3320 3628 5.182570 CGTCCGGATATGTACAGGAGATTTA 59.817 44.000 7.81 0.00 32.89 1.40
3321 3629 6.294342 CGTCCGGATATGTACAGGAGATTTAA 60.294 42.308 7.81 0.00 32.89 1.52
3322 3630 7.091443 GTCCGGATATGTACAGGAGATTTAAG 58.909 42.308 7.81 0.00 32.89 1.85
3323 3631 6.210784 TCCGGATATGTACAGGAGATTTAAGG 59.789 42.308 0.00 0.00 0.00 2.69
3324 3632 6.398918 CGGATATGTACAGGAGATTTAAGGG 58.601 44.000 0.33 0.00 0.00 3.95
3325 3633 6.574465 CGGATATGTACAGGAGATTTAAGGGG 60.574 46.154 0.33 0.00 0.00 4.79
3326 3634 6.272558 GGATATGTACAGGAGATTTAAGGGGT 59.727 42.308 0.33 0.00 0.00 4.95
3327 3635 5.632034 ATGTACAGGAGATTTAAGGGGTC 57.368 43.478 0.33 0.00 0.00 4.46
3328 3636 3.778629 TGTACAGGAGATTTAAGGGGTCC 59.221 47.826 0.00 0.00 0.00 4.46
3329 3637 2.929301 ACAGGAGATTTAAGGGGTCCA 58.071 47.619 0.00 0.00 0.00 4.02
3330 3638 2.846827 ACAGGAGATTTAAGGGGTCCAG 59.153 50.000 0.00 0.00 0.00 3.86
3331 3639 1.847088 AGGAGATTTAAGGGGTCCAGC 59.153 52.381 0.00 0.00 0.00 4.85
3332 3640 1.847088 GGAGATTTAAGGGGTCCAGCT 59.153 52.381 0.00 0.00 0.00 4.24
3333 3641 2.242452 GGAGATTTAAGGGGTCCAGCTT 59.758 50.000 0.00 0.00 0.00 3.74
3334 3642 3.546724 GAGATTTAAGGGGTCCAGCTTC 58.453 50.000 0.00 0.00 0.00 3.86
3335 3643 3.193782 AGATTTAAGGGGTCCAGCTTCT 58.806 45.455 0.00 0.00 0.00 2.85
3336 3644 3.593780 AGATTTAAGGGGTCCAGCTTCTT 59.406 43.478 0.00 0.00 0.00 2.52
3337 3645 4.788617 AGATTTAAGGGGTCCAGCTTCTTA 59.211 41.667 0.00 0.00 0.00 2.10
3338 3646 5.253096 AGATTTAAGGGGTCCAGCTTCTTAA 59.747 40.000 0.00 0.00 0.00 1.85
3339 3647 5.327737 TTTAAGGGGTCCAGCTTCTTAAA 57.672 39.130 0.00 0.00 37.48 1.52
3340 3648 2.881111 AGGGGTCCAGCTTCTTAAAC 57.119 50.000 0.00 0.00 0.00 2.01
3341 3649 1.354705 AGGGGTCCAGCTTCTTAAACC 59.645 52.381 0.00 0.00 0.00 3.27
3342 3650 1.450025 GGGTCCAGCTTCTTAAACCG 58.550 55.000 0.00 0.00 0.00 4.44
3343 3651 0.803117 GGTCCAGCTTCTTAAACCGC 59.197 55.000 0.00 0.00 0.00 5.68
3344 3652 0.803117 GTCCAGCTTCTTAAACCGCC 59.197 55.000 0.00 0.00 0.00 6.13
3345 3653 0.398696 TCCAGCTTCTTAAACCGCCA 59.601 50.000 0.00 0.00 0.00 5.69
3346 3654 0.521735 CCAGCTTCTTAAACCGCCAC 59.478 55.000 0.00 0.00 0.00 5.01
3347 3655 1.234821 CAGCTTCTTAAACCGCCACA 58.765 50.000 0.00 0.00 0.00 4.17
3348 3656 1.812571 CAGCTTCTTAAACCGCCACAT 59.187 47.619 0.00 0.00 0.00 3.21
3349 3657 3.006940 CAGCTTCTTAAACCGCCACATA 58.993 45.455 0.00 0.00 0.00 2.29
3350 3658 3.007635 AGCTTCTTAAACCGCCACATAC 58.992 45.455 0.00 0.00 0.00 2.39
3351 3659 2.745281 GCTTCTTAAACCGCCACATACA 59.255 45.455 0.00 0.00 0.00 2.29
3352 3660 3.377172 GCTTCTTAAACCGCCACATACAT 59.623 43.478 0.00 0.00 0.00 2.29
3353 3661 4.730613 GCTTCTTAAACCGCCACATACATG 60.731 45.833 0.00 0.00 0.00 3.21
3354 3662 2.680841 TCTTAAACCGCCACATACATGC 59.319 45.455 0.00 0.00 0.00 4.06
3355 3663 2.115343 TAAACCGCCACATACATGCA 57.885 45.000 0.00 0.00 0.00 3.96
3356 3664 0.525761 AAACCGCCACATACATGCAC 59.474 50.000 0.00 0.00 0.00 4.57
3357 3665 1.312371 AACCGCCACATACATGCACC 61.312 55.000 0.00 0.00 0.00 5.01
3358 3666 1.451927 CCGCCACATACATGCACCT 60.452 57.895 0.00 0.00 0.00 4.00
3359 3667 1.439353 CCGCCACATACATGCACCTC 61.439 60.000 0.00 0.00 0.00 3.85
3360 3668 0.744057 CGCCACATACATGCACCTCA 60.744 55.000 0.00 0.00 0.00 3.86
3361 3669 0.734889 GCCACATACATGCACCTCAC 59.265 55.000 0.00 0.00 0.00 3.51
3362 3670 1.950015 GCCACATACATGCACCTCACA 60.950 52.381 0.00 0.00 0.00 3.58
3363 3671 2.435422 CCACATACATGCACCTCACAA 58.565 47.619 0.00 0.00 0.00 3.33
3364 3672 3.018856 CCACATACATGCACCTCACAAT 58.981 45.455 0.00 0.00 0.00 2.71
3365 3673 3.181494 CCACATACATGCACCTCACAATG 60.181 47.826 0.00 0.00 0.00 2.82
3366 3674 3.690628 CACATACATGCACCTCACAATGA 59.309 43.478 0.00 0.00 0.00 2.57
3367 3675 3.691118 ACATACATGCACCTCACAATGAC 59.309 43.478 0.00 0.00 0.00 3.06
3368 3676 2.574006 ACATGCACCTCACAATGACT 57.426 45.000 0.00 0.00 0.00 3.41
3369 3677 3.701205 ACATGCACCTCACAATGACTA 57.299 42.857 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.323477 CGCCGAACCCCCTTGTCA 62.323 66.667 0.00 0.00 0.00 3.58
17 18 1.119684 GAGGAGGAAGAAGAGGAGGC 58.880 60.000 0.00 0.00 0.00 4.70
83 87 3.126879 CGCAGGCTCGGCATTGAA 61.127 61.111 0.00 0.00 0.00 2.69
196 203 0.383949 GCTCCGTTTTTGCCTTGACA 59.616 50.000 0.00 0.00 0.00 3.58
203 210 4.050934 CCCCGGCTCCGTTTTTGC 62.051 66.667 7.59 0.00 37.81 3.68
301 308 2.745884 CGGCGTGCCCATTCAAGA 60.746 61.111 5.08 0.00 0.00 3.02
318 325 1.529309 GCCATCTTCAGGGAGTCCC 59.471 63.158 21.81 21.81 45.90 4.46
510 538 4.191485 CGCCGTCGTCATCGTTGC 62.191 66.667 0.00 0.00 38.33 4.17
512 540 4.047059 ACCGCCGTCGTCATCGTT 62.047 61.111 0.00 0.00 38.33 3.85
618 649 8.310122 AGGGCATATATTTCAACAAAGTTCAT 57.690 30.769 0.00 0.00 0.00 2.57
619 650 7.716799 AGGGCATATATTTCAACAAAGTTCA 57.283 32.000 0.00 0.00 0.00 3.18
643 674 3.381908 ACACGACAAATTTTGGCCAACTA 59.618 39.130 20.35 10.06 34.26 2.24
652 683 4.555348 TCGGCTAAACACGACAAATTTT 57.445 36.364 0.00 0.00 33.69 1.82
746 781 3.637273 GAGTTGGTCCCCAGCCGT 61.637 66.667 0.00 0.00 35.27 5.68
823 861 1.079127 ATCTTCAGCCGTTGACCCG 60.079 57.895 0.00 0.00 34.94 5.28
917 955 1.539157 TATTTGCATGGCGTTGTGGA 58.461 45.000 0.00 0.00 0.00 4.02
964 1002 4.031765 CGATCATGGAGTAAACAAGTCGTG 59.968 45.833 0.00 0.00 0.00 4.35
1025 1071 0.784178 CGATGGTGTGTGTGAAGACG 59.216 55.000 0.00 0.00 0.00 4.18
1042 1088 1.521450 GGTGAGGTGAGGACGAACGA 61.521 60.000 0.14 0.00 0.00 3.85
1043 1089 1.080705 GGTGAGGTGAGGACGAACG 60.081 63.158 0.00 0.00 0.00 3.95
1044 1090 0.680061 AAGGTGAGGTGAGGACGAAC 59.320 55.000 0.00 0.00 0.00 3.95
1045 1091 0.679505 CAAGGTGAGGTGAGGACGAA 59.320 55.000 0.00 0.00 0.00 3.85
1046 1092 0.469331 ACAAGGTGAGGTGAGGACGA 60.469 55.000 0.00 0.00 0.00 4.20
1047 1093 1.067776 GTACAAGGTGAGGTGAGGACG 60.068 57.143 0.00 0.00 0.00 4.79
1048 1094 1.968493 TGTACAAGGTGAGGTGAGGAC 59.032 52.381 0.00 0.00 0.00 3.85
1082 1148 2.967615 GCGCCGGCTAGAATGGAC 60.968 66.667 26.68 0.00 35.83 4.02
1110 1176 2.028876 TGAGAGTTCACTGGTGTCGAA 58.971 47.619 0.00 0.00 0.00 3.71
1121 1187 3.129462 CCATCGCTAGACTTGAGAGTTCA 59.871 47.826 0.00 0.00 35.88 3.18
1129 1195 1.565305 GTCTGCCATCGCTAGACTTG 58.435 55.000 0.00 0.00 38.77 3.16
1205 1271 1.751563 GTAGGGGATGAGCTGGAGC 59.248 63.158 0.00 0.00 42.49 4.70
1206 1272 0.105246 AGGTAGGGGATGAGCTGGAG 60.105 60.000 0.00 0.00 0.00 3.86
1207 1273 0.105453 GAGGTAGGGGATGAGCTGGA 60.105 60.000 0.00 0.00 0.00 3.86
1208 1274 1.467678 CGAGGTAGGGGATGAGCTGG 61.468 65.000 0.00 0.00 0.00 4.85
1209 1275 0.757188 ACGAGGTAGGGGATGAGCTG 60.757 60.000 0.00 0.00 0.00 4.24
1210 1276 0.468400 GACGAGGTAGGGGATGAGCT 60.468 60.000 0.00 0.00 0.00 4.09
1221 1287 2.110967 CGAGGAAGCCGACGAGGTA 61.111 63.158 0.00 0.00 43.70 3.08
1481 1559 2.048127 GTGGCACTCAGACCGTCC 60.048 66.667 11.13 0.00 0.00 4.79
1484 1562 4.363990 AGCGTGGCACTCAGACCG 62.364 66.667 16.72 1.15 0.00 4.79
1487 1565 4.007644 CCCAGCGTGGCACTCAGA 62.008 66.667 16.72 0.00 35.79 3.27
1671 1749 1.455773 TCGACGAGATCATGGCCCT 60.456 57.895 0.00 0.00 0.00 5.19
1777 1855 0.398318 AACGAAAAGAGAGGCTGCCT 59.602 50.000 23.64 23.64 36.03 4.75
1778 1856 0.799393 GAACGAAAAGAGAGGCTGCC 59.201 55.000 11.65 11.65 0.00 4.85
1779 1857 0.799393 GGAACGAAAAGAGAGGCTGC 59.201 55.000 0.00 0.00 0.00 5.25
1842 1959 5.069119 AGGAAAAACAGGACAATCAAGAACC 59.931 40.000 0.00 0.00 0.00 3.62
1879 2035 1.635817 ATCCATCCACCCCCAACTCG 61.636 60.000 0.00 0.00 0.00 4.18
1976 2137 6.422333 TGGGAGCAATGTGTATAATCAAAGA 58.578 36.000 0.00 0.00 0.00 2.52
1977 2138 6.698008 TGGGAGCAATGTGTATAATCAAAG 57.302 37.500 0.00 0.00 0.00 2.77
2034 2212 2.624636 GCCAAAAGGCAAGATCATTGG 58.375 47.619 0.84 0.00 40.16 3.16
2051 2229 1.749063 ACAGATTCGATGACTACGCCA 59.251 47.619 0.00 0.00 0.00 5.69
2055 2233 4.286910 GCAGAGACAGATTCGATGACTAC 58.713 47.826 0.00 0.00 0.00 2.73
2153 2357 2.811431 TGGCCTCTTTGTTTGTATCGTG 59.189 45.455 3.32 0.00 0.00 4.35
2159 2363 0.106918 TCGGTGGCCTCTTTGTTTGT 60.107 50.000 3.32 0.00 0.00 2.83
2160 2364 0.310854 GTCGGTGGCCTCTTTGTTTG 59.689 55.000 3.32 0.00 0.00 2.93
2161 2365 0.182775 AGTCGGTGGCCTCTTTGTTT 59.817 50.000 3.32 0.00 0.00 2.83
2162 2366 0.250338 GAGTCGGTGGCCTCTTTGTT 60.250 55.000 3.32 0.00 0.00 2.83
2203 2424 1.440145 GGGACGAAATAGCAGCCTGC 61.440 60.000 9.13 9.13 45.46 4.85
2222 2486 0.449388 GAAGCTTCCTTGTGATGGCG 59.551 55.000 15.97 0.00 0.00 5.69
2269 2538 4.099419 GTGTCAACCTCACCAAATTTTCCT 59.901 41.667 0.00 0.00 0.00 3.36
2368 2641 6.754675 CGGTTGCTTAATACCCCTTTTTAATG 59.245 38.462 0.00 0.00 0.00 1.90
2370 2643 5.336610 GCGGTTGCTTAATACCCCTTTTTAA 60.337 40.000 0.00 0.00 38.39 1.52
2372 2645 3.056393 GCGGTTGCTTAATACCCCTTTTT 60.056 43.478 0.00 0.00 38.39 1.94
2373 2646 2.494471 GCGGTTGCTTAATACCCCTTTT 59.506 45.455 0.00 0.00 38.39 2.27
2374 2647 2.097036 GCGGTTGCTTAATACCCCTTT 58.903 47.619 0.00 0.00 38.39 3.11
2376 2649 0.621609 TGCGGTTGCTTAATACCCCT 59.378 50.000 0.00 0.00 43.34 4.79
2378 2651 3.579335 TTTTGCGGTTGCTTAATACCC 57.421 42.857 0.00 0.00 43.34 3.69
2400 2676 6.274908 GGGAGGATGTTCTTAATACCCCTATT 59.725 42.308 0.00 0.00 0.00 1.73
2413 2689 3.657727 TCTTTCTTTGGGGAGGATGTTCT 59.342 43.478 0.00 0.00 0.00 3.01
2414 2690 4.034285 TCTTTCTTTGGGGAGGATGTTC 57.966 45.455 0.00 0.00 0.00 3.18
2417 2693 3.131755 GCAATCTTTCTTTGGGGAGGATG 59.868 47.826 0.00 0.00 0.00 3.51
2419 2695 2.109834 TGCAATCTTTCTTTGGGGAGGA 59.890 45.455 0.00 0.00 0.00 3.71
2420 2696 2.232208 GTGCAATCTTTCTTTGGGGAGG 59.768 50.000 0.00 0.00 0.00 4.30
2422 2698 2.956132 TGTGCAATCTTTCTTTGGGGA 58.044 42.857 0.00 0.00 0.00 4.81
2431 2733 4.022416 TCGCCTTAATGTTGTGCAATCTTT 60.022 37.500 0.00 0.00 0.00 2.52
2433 2735 3.081061 TCGCCTTAATGTTGTGCAATCT 58.919 40.909 0.00 0.00 0.00 2.40
2436 2738 2.031245 CACTCGCCTTAATGTTGTGCAA 60.031 45.455 0.00 0.00 0.00 4.08
2465 2767 4.455877 CCGAGTAAGCCTTTTCATTTCTGT 59.544 41.667 0.00 0.00 0.00 3.41
2466 2768 4.455877 ACCGAGTAAGCCTTTTCATTTCTG 59.544 41.667 0.00 0.00 0.00 3.02
2467 2769 4.652822 ACCGAGTAAGCCTTTTCATTTCT 58.347 39.130 0.00 0.00 0.00 2.52
2468 2770 5.372547 AACCGAGTAAGCCTTTTCATTTC 57.627 39.130 0.00 0.00 0.00 2.17
2471 2773 5.293569 CGATAAACCGAGTAAGCCTTTTCAT 59.706 40.000 0.00 0.00 0.00 2.57
2494 2796 2.417339 TCTCGTCCTGTTTTGACTCG 57.583 50.000 0.00 0.00 0.00 4.18
2499 2801 4.272504 TGTTTAGCTTCTCGTCCTGTTTTG 59.727 41.667 0.00 0.00 0.00 2.44
2504 2806 3.654414 AGTTGTTTAGCTTCTCGTCCTG 58.346 45.455 0.00 0.00 0.00 3.86
2505 2807 3.306156 GGAGTTGTTTAGCTTCTCGTCCT 60.306 47.826 0.00 0.00 0.00 3.85
2506 2808 2.994578 GGAGTTGTTTAGCTTCTCGTCC 59.005 50.000 0.00 0.00 0.00 4.79
2512 2814 6.874664 AGTTTAGCTAGGAGTTGTTTAGCTTC 59.125 38.462 10.13 3.44 45.77 3.86
2557 2859 7.114811 CGTGTTGGCCTTTTGATATTTATATGC 59.885 37.037 3.32 0.00 0.00 3.14
2562 2864 4.739195 GCGTGTTGGCCTTTTGATATTTA 58.261 39.130 3.32 0.00 0.00 1.40
2588 2891 1.229177 TGCCTAGCCAGGAGTGACA 60.229 57.895 0.85 0.00 45.91 3.58
2589 2892 1.219393 GTGCCTAGCCAGGAGTGAC 59.781 63.158 0.85 0.00 45.91 3.67
2597 2900 3.826754 CGCTCGAGTGCCTAGCCA 61.827 66.667 13.91 0.00 32.50 4.75
2601 2904 1.801332 GAAGTCGCTCGAGTGCCTA 59.199 57.895 21.17 1.02 0.00 3.93
2615 2918 2.995574 ACCTGGTAGCGGCGAAGT 60.996 61.111 12.98 0.00 0.00 3.01
2646 2949 8.853126 TGTGTTAGCTTGGTATAATACGACTAT 58.147 33.333 0.00 0.00 0.00 2.12
2667 2970 2.192624 GTTCGCAAACATGCTTGTGTT 58.807 42.857 18.98 1.58 43.78 3.32
2687 2990 1.229315 CCTCTCCGGTATCGTCGAGG 61.229 65.000 13.66 13.66 41.22 4.63
2696 2999 3.752665 GACATATCAGTCCTCTCCGGTA 58.247 50.000 0.00 0.00 32.36 4.02
2726 3029 0.033601 ATTGGGGCGGCATAAGTTCA 60.034 50.000 12.47 0.00 0.00 3.18
2740 3043 0.897621 GCCAACCTTGAAGGATTGGG 59.102 55.000 29.63 20.81 42.10 4.12
2743 3046 7.400052 AGTTATATTTGCCAACCTTGAAGGATT 59.600 33.333 19.83 5.74 37.67 3.01
2763 3066 4.153475 GCAAGGAACGTCAAGCAAGTTATA 59.847 41.667 0.00 0.00 0.00 0.98
2764 3067 3.058224 GCAAGGAACGTCAAGCAAGTTAT 60.058 43.478 0.00 0.00 0.00 1.89
2770 3073 0.465460 AAGGCAAGGAACGTCAAGCA 60.465 50.000 0.00 0.00 0.00 3.91
2773 3076 1.946768 CAAGAAGGCAAGGAACGTCAA 59.053 47.619 0.00 0.00 0.00 3.18
2789 3092 0.842030 AGGACCCTCCACATGCAAGA 60.842 55.000 0.00 0.00 39.61 3.02
2805 3108 2.043248 GTGAGGGCGGTAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
2812 3115 1.608717 GACATCTCTGTGAGGGCGGT 61.609 60.000 0.00 0.00 35.14 5.68
2814 3117 0.463204 ATGACATCTCTGTGAGGGCG 59.537 55.000 0.00 0.00 37.29 6.13
2816 3119 1.485480 AGCATGACATCTCTGTGAGGG 59.515 52.381 0.00 0.00 35.14 4.30
2840 3143 1.367840 GCAGAGGTTGTCGGTGACT 59.632 57.895 0.00 0.00 33.15 3.41
2842 3145 2.197605 TCGCAGAGGTTGTCGGTGA 61.198 57.895 0.00 0.00 37.52 4.02
2859 3162 2.137528 GCTAGAGGGACTGGGGCTC 61.138 68.421 0.00 0.00 41.55 4.70
2868 3171 3.034635 GAGTTGGATTCAGCTAGAGGGA 58.965 50.000 0.00 0.00 34.53 4.20
2875 3178 2.306805 TGTCATGGAGTTGGATTCAGCT 59.693 45.455 0.00 0.00 37.15 4.24
2892 3195 0.321564 CGCTCTTGGGGACATTGTCA 60.322 55.000 18.09 0.00 42.32 3.58
2896 3199 2.094675 CATTTCGCTCTTGGGGACATT 58.905 47.619 0.00 0.00 42.32 2.71
2898 3201 0.690192 TCATTTCGCTCTTGGGGACA 59.310 50.000 0.00 0.00 36.61 4.02
2900 3203 2.018644 GCATCATTTCGCTCTTGGGGA 61.019 52.381 0.00 0.00 35.02 4.81
2910 3213 1.131126 ACTTTGCTCGGCATCATTTCG 59.869 47.619 0.00 0.00 38.76 3.46
2956 3259 0.105607 AACCCTAGATCCGGTCTCCC 60.106 60.000 0.00 0.00 38.42 4.30
2985 3288 0.566176 TCCTCCCCCTCCGAACATAT 59.434 55.000 0.00 0.00 0.00 1.78
2988 3291 2.284405 GTCCTCCCCCTCCGAACA 60.284 66.667 0.00 0.00 0.00 3.18
3029 3337 0.907704 TGCCTACGGGTGTCATTCCT 60.908 55.000 0.00 0.00 34.45 3.36
3034 3342 2.524640 TGGTGCCTACGGGTGTCA 60.525 61.111 0.00 0.00 34.45 3.58
3038 3346 3.633116 GTGGTGGTGCCTACGGGT 61.633 66.667 0.00 0.00 38.35 5.28
3045 3353 1.961277 CGAAGTCAGTGGTGGTGCC 60.961 63.158 0.00 0.00 37.90 5.01
3048 3356 0.389391 CAGTCGAAGTCAGTGGTGGT 59.611 55.000 0.00 0.00 0.00 4.16
3050 3358 0.249447 TGCAGTCGAAGTCAGTGGTG 60.249 55.000 0.00 0.00 0.00 4.17
3051 3359 0.032678 CTGCAGTCGAAGTCAGTGGT 59.967 55.000 5.25 0.00 0.00 4.16
3079 3387 3.138930 GACGCCAGCATAGCTCCGA 62.139 63.158 13.30 0.00 36.40 4.55
3090 3398 0.723414 CTTGTATGCACTGACGCCAG 59.277 55.000 0.00 0.00 45.76 4.85
3096 3404 4.162131 TCTCTTATGCCTTGTATGCACTGA 59.838 41.667 0.00 0.00 42.38 3.41
3098 3406 4.444022 CCTCTCTTATGCCTTGTATGCACT 60.444 45.833 0.00 0.00 42.38 4.40
3104 3412 4.079154 TCCTCTCCTCTCTTATGCCTTGTA 60.079 45.833 0.00 0.00 0.00 2.41
3113 3421 3.052566 TGCCATCTTCCTCTCCTCTCTTA 60.053 47.826 0.00 0.00 0.00 2.10
3124 3432 1.306141 TCCGACCTGCCATCTTCCT 60.306 57.895 0.00 0.00 0.00 3.36
3140 3448 3.756434 TCCCAAATCACTTCAAATCGTCC 59.244 43.478 0.00 0.00 0.00 4.79
3142 3450 4.766891 ACATCCCAAATCACTTCAAATCGT 59.233 37.500 0.00 0.00 0.00 3.73
3150 3458 3.424703 CCAGACACATCCCAAATCACTT 58.575 45.455 0.00 0.00 0.00 3.16
3171 3479 0.758734 GGGGGCAAATATGGAAAGGC 59.241 55.000 0.00 0.00 0.00 4.35
3172 3480 1.762370 GTGGGGGCAAATATGGAAAGG 59.238 52.381 0.00 0.00 0.00 3.11
3173 3481 2.465813 TGTGGGGGCAAATATGGAAAG 58.534 47.619 0.00 0.00 0.00 2.62
3174 3482 2.630889 TGTGGGGGCAAATATGGAAA 57.369 45.000 0.00 0.00 0.00 3.13
3175 3483 2.864885 ATGTGGGGGCAAATATGGAA 57.135 45.000 0.00 0.00 0.00 3.53
3176 3484 3.777087 CATATGTGGGGGCAAATATGGA 58.223 45.455 0.00 0.00 31.98 3.41
3177 3485 2.833338 CCATATGTGGGGGCAAATATGG 59.167 50.000 0.02 0.02 43.27 2.74
3178 3486 3.511146 GTCCATATGTGGGGGCAAATATG 59.489 47.826 8.84 0.00 46.06 1.78
3179 3487 3.502119 GGTCCATATGTGGGGGCAAATAT 60.502 47.826 8.84 0.00 46.06 1.28
3180 3488 2.158385 GGTCCATATGTGGGGGCAAATA 60.158 50.000 8.84 0.00 46.06 1.40
3181 3489 1.412937 GGTCCATATGTGGGGGCAAAT 60.413 52.381 8.84 0.00 46.06 2.32
3182 3490 0.032615 GGTCCATATGTGGGGGCAAA 60.033 55.000 8.84 0.00 46.06 3.68
3183 3491 1.618030 GGTCCATATGTGGGGGCAA 59.382 57.895 8.84 0.00 46.06 4.52
3184 3492 2.751731 CGGTCCATATGTGGGGGCA 61.752 63.158 8.84 0.00 46.06 5.36
3185 3493 2.113139 CGGTCCATATGTGGGGGC 59.887 66.667 8.84 0.00 46.06 5.80
3186 3494 2.829384 CCCGGTCCATATGTGGGGG 61.829 68.421 8.84 7.73 46.06 5.40
3187 3495 1.641552 AACCCGGTCCATATGTGGGG 61.642 60.000 18.41 15.90 46.06 4.96
3188 3496 0.257616 AAACCCGGTCCATATGTGGG 59.742 55.000 8.84 14.63 46.06 4.61
3190 3498 2.411628 TCAAACCCGGTCCATATGTG 57.588 50.000 0.00 0.00 0.00 3.21
3191 3499 2.356741 CCTTCAAACCCGGTCCATATGT 60.357 50.000 0.00 0.00 0.00 2.29
3192 3500 2.297701 CCTTCAAACCCGGTCCATATG 58.702 52.381 0.00 0.00 0.00 1.78
3193 3501 1.214424 CCCTTCAAACCCGGTCCATAT 59.786 52.381 0.00 0.00 0.00 1.78
3194 3502 0.621609 CCCTTCAAACCCGGTCCATA 59.378 55.000 0.00 0.00 0.00 2.74
3195 3503 1.382629 CCCTTCAAACCCGGTCCAT 59.617 57.895 0.00 0.00 0.00 3.41
3196 3504 2.079911 ACCCTTCAAACCCGGTCCA 61.080 57.895 0.00 0.00 0.00 4.02
3197 3505 1.602605 CACCCTTCAAACCCGGTCC 60.603 63.158 0.00 0.00 0.00 4.46
3198 3506 0.887836 GACACCCTTCAAACCCGGTC 60.888 60.000 0.00 0.00 0.00 4.79
3199 3507 1.149854 GACACCCTTCAAACCCGGT 59.850 57.895 0.00 0.00 0.00 5.28
3200 3508 1.964373 CGACACCCTTCAAACCCGG 60.964 63.158 0.00 0.00 0.00 5.73
3201 3509 1.964373 CCGACACCCTTCAAACCCG 60.964 63.158 0.00 0.00 0.00 5.28
3202 3510 0.887836 GTCCGACACCCTTCAAACCC 60.888 60.000 0.00 0.00 0.00 4.11
3203 3511 0.179040 TGTCCGACACCCTTCAAACC 60.179 55.000 0.00 0.00 0.00 3.27
3204 3512 1.226746 CTGTCCGACACCCTTCAAAC 58.773 55.000 0.00 0.00 0.00 2.93
3205 3513 0.834612 ACTGTCCGACACCCTTCAAA 59.165 50.000 0.00 0.00 0.00 2.69
3206 3514 0.391597 GACTGTCCGACACCCTTCAA 59.608 55.000 0.00 0.00 0.00 2.69
3207 3515 1.469335 GGACTGTCCGACACCCTTCA 61.469 60.000 11.71 0.00 0.00 3.02
3208 3516 1.292541 GGACTGTCCGACACCCTTC 59.707 63.158 11.71 0.00 0.00 3.46
3209 3517 3.468063 GGACTGTCCGACACCCTT 58.532 61.111 11.71 0.00 0.00 3.95
3218 3526 0.602905 CTCAAACACCCGGACTGTCC 60.603 60.000 16.99 16.99 0.00 4.02
3219 3527 0.106149 ACTCAAACACCCGGACTGTC 59.894 55.000 0.73 0.00 0.00 3.51
3220 3528 0.544697 AACTCAAACACCCGGACTGT 59.455 50.000 0.73 0.00 0.00 3.55
3221 3529 0.944386 CAACTCAAACACCCGGACTG 59.056 55.000 0.73 0.00 0.00 3.51
3222 3530 0.834612 TCAACTCAAACACCCGGACT 59.165 50.000 0.73 0.00 0.00 3.85
3223 3531 1.226746 CTCAACTCAAACACCCGGAC 58.773 55.000 0.73 0.00 0.00 4.79
3224 3532 0.834612 ACTCAACTCAAACACCCGGA 59.165 50.000 0.73 0.00 0.00 5.14
3225 3533 2.536761 TACTCAACTCAAACACCCGG 57.463 50.000 0.00 0.00 0.00 5.73
3226 3534 3.186409 CACATACTCAACTCAAACACCCG 59.814 47.826 0.00 0.00 0.00 5.28
3227 3535 3.502211 CCACATACTCAACTCAAACACCC 59.498 47.826 0.00 0.00 0.00 4.61
3228 3536 3.502211 CCCACATACTCAACTCAAACACC 59.498 47.826 0.00 0.00 0.00 4.16
3229 3537 4.134563 ACCCACATACTCAACTCAAACAC 58.865 43.478 0.00 0.00 0.00 3.32
3230 3538 4.385825 GACCCACATACTCAACTCAAACA 58.614 43.478 0.00 0.00 0.00 2.83
3231 3539 3.751698 GGACCCACATACTCAACTCAAAC 59.248 47.826 0.00 0.00 0.00 2.93
3232 3540 3.556213 CGGACCCACATACTCAACTCAAA 60.556 47.826 0.00 0.00 0.00 2.69
3233 3541 2.028476 CGGACCCACATACTCAACTCAA 60.028 50.000 0.00 0.00 0.00 3.02
3234 3542 1.548719 CGGACCCACATACTCAACTCA 59.451 52.381 0.00 0.00 0.00 3.41
3235 3543 1.134788 CCGGACCCACATACTCAACTC 60.135 57.143 0.00 0.00 0.00 3.01
3236 3544 0.902531 CCGGACCCACATACTCAACT 59.097 55.000 0.00 0.00 0.00 3.16
3237 3545 0.611714 ACCGGACCCACATACTCAAC 59.388 55.000 9.46 0.00 0.00 3.18
3238 3546 1.354101 AACCGGACCCACATACTCAA 58.646 50.000 9.46 0.00 0.00 3.02
3239 3547 2.234896 TAACCGGACCCACATACTCA 57.765 50.000 9.46 0.00 0.00 3.41
3240 3548 2.498885 ACTTAACCGGACCCACATACTC 59.501 50.000 9.46 0.00 0.00 2.59
3241 3549 2.235402 CACTTAACCGGACCCACATACT 59.765 50.000 9.46 0.00 0.00 2.12
3242 3550 2.624636 CACTTAACCGGACCCACATAC 58.375 52.381 9.46 0.00 0.00 2.39
3243 3551 1.555992 CCACTTAACCGGACCCACATA 59.444 52.381 9.46 0.00 0.00 2.29
3244 3552 0.326927 CCACTTAACCGGACCCACAT 59.673 55.000 9.46 0.00 0.00 3.21
3245 3553 1.756024 CCACTTAACCGGACCCACA 59.244 57.895 9.46 0.00 0.00 4.17
3246 3554 1.673337 GCCACTTAACCGGACCCAC 60.673 63.158 9.46 0.00 0.00 4.61
3247 3555 1.706995 TTGCCACTTAACCGGACCCA 61.707 55.000 9.46 0.00 0.00 4.51
3248 3556 0.323087 ATTGCCACTTAACCGGACCC 60.323 55.000 9.46 0.00 0.00 4.46
3249 3557 1.541379 AATTGCCACTTAACCGGACC 58.459 50.000 9.46 0.00 0.00 4.46
3250 3558 2.413634 CGAAATTGCCACTTAACCGGAC 60.414 50.000 9.46 0.00 0.00 4.79
3251 3559 1.807742 CGAAATTGCCACTTAACCGGA 59.192 47.619 9.46 0.00 0.00 5.14
3252 3560 1.538075 ACGAAATTGCCACTTAACCGG 59.462 47.619 0.00 0.00 0.00 5.28
3253 3561 2.224549 TCACGAAATTGCCACTTAACCG 59.775 45.455 0.00 0.00 0.00 4.44
3254 3562 3.252458 AGTCACGAAATTGCCACTTAACC 59.748 43.478 0.00 0.00 0.00 2.85
3255 3563 4.483476 AGTCACGAAATTGCCACTTAAC 57.517 40.909 0.00 0.00 0.00 2.01
3256 3564 4.576873 TCAAGTCACGAAATTGCCACTTAA 59.423 37.500 0.00 0.00 0.00 1.85
3257 3565 4.130857 TCAAGTCACGAAATTGCCACTTA 58.869 39.130 0.00 0.00 0.00 2.24
3258 3566 2.948979 TCAAGTCACGAAATTGCCACTT 59.051 40.909 0.00 0.00 0.00 3.16
3259 3567 2.571212 TCAAGTCACGAAATTGCCACT 58.429 42.857 0.00 0.00 0.00 4.00
3260 3568 3.559238 ATCAAGTCACGAAATTGCCAC 57.441 42.857 0.00 0.00 0.00 5.01
3261 3569 4.323417 ACTATCAAGTCACGAAATTGCCA 58.677 39.130 0.00 0.00 0.00 4.92
3262 3570 4.946784 ACTATCAAGTCACGAAATTGCC 57.053 40.909 0.00 0.00 0.00 4.52
3263 3571 6.841286 CGATTACTATCAAGTCACGAAATTGC 59.159 38.462 0.00 0.00 37.15 3.56
3264 3572 7.895870 ACGATTACTATCAAGTCACGAAATTG 58.104 34.615 0.00 0.00 37.15 2.32
3265 3573 9.017669 GTACGATTACTATCAAGTCACGAAATT 57.982 33.333 0.00 0.00 37.15 1.82
3266 3574 8.404000 AGTACGATTACTATCAAGTCACGAAAT 58.596 33.333 0.00 0.00 36.73 2.17
3267 3575 7.695201 CAGTACGATTACTATCAAGTCACGAAA 59.305 37.037 0.00 0.00 36.31 3.46
3268 3576 7.148356 ACAGTACGATTACTATCAAGTCACGAA 60.148 37.037 0.00 0.00 36.31 3.85
3269 3577 6.314648 ACAGTACGATTACTATCAAGTCACGA 59.685 38.462 0.00 0.00 36.31 4.35
3270 3578 6.484540 ACAGTACGATTACTATCAAGTCACG 58.515 40.000 0.00 0.00 36.31 4.35
3271 3579 6.911511 GGACAGTACGATTACTATCAAGTCAC 59.088 42.308 0.00 0.00 33.92 3.67
3272 3580 6.238293 CGGACAGTACGATTACTATCAAGTCA 60.238 42.308 0.00 0.00 33.92 3.41
3273 3581 6.134730 CGGACAGTACGATTACTATCAAGTC 58.865 44.000 0.00 0.00 33.92 3.01
3274 3582 5.587844 ACGGACAGTACGATTACTATCAAGT 59.412 40.000 13.59 0.00 33.92 3.16
3275 3583 6.057627 ACGGACAGTACGATTACTATCAAG 57.942 41.667 13.59 0.00 33.92 3.02
3276 3584 5.008019 GGACGGACAGTACGATTACTATCAA 59.992 44.000 13.59 0.00 33.92 2.57
3277 3585 4.512944 GGACGGACAGTACGATTACTATCA 59.487 45.833 13.59 0.00 33.92 2.15
3278 3586 5.028428 GGACGGACAGTACGATTACTATC 57.972 47.826 13.59 0.00 36.31 2.08
3295 3603 1.540267 CTCCTGTACATATCCGGACGG 59.460 57.143 6.12 3.96 0.00 4.79
3296 3604 2.501261 TCTCCTGTACATATCCGGACG 58.499 52.381 6.12 0.00 0.00 4.79
3297 3605 5.470047 AAATCTCCTGTACATATCCGGAC 57.530 43.478 6.12 0.00 0.00 4.79
3298 3606 6.210784 CCTTAAATCTCCTGTACATATCCGGA 59.789 42.308 6.61 6.61 0.00 5.14
3299 3607 6.398918 CCTTAAATCTCCTGTACATATCCGG 58.601 44.000 0.00 0.00 0.00 5.14
3300 3608 6.398918 CCCTTAAATCTCCTGTACATATCCG 58.601 44.000 0.00 0.00 0.00 4.18
3301 3609 6.272558 ACCCCTTAAATCTCCTGTACATATCC 59.727 42.308 0.00 0.00 0.00 2.59
3302 3610 7.317722 ACCCCTTAAATCTCCTGTACATATC 57.682 40.000 0.00 0.00 0.00 1.63
3303 3611 6.272558 GGACCCCTTAAATCTCCTGTACATAT 59.727 42.308 0.00 0.00 0.00 1.78
3304 3612 5.605488 GGACCCCTTAAATCTCCTGTACATA 59.395 44.000 0.00 0.00 0.00 2.29
3305 3613 4.412528 GGACCCCTTAAATCTCCTGTACAT 59.587 45.833 0.00 0.00 0.00 2.29
3306 3614 3.778629 GGACCCCTTAAATCTCCTGTACA 59.221 47.826 0.00 0.00 0.00 2.90
3307 3615 3.778629 TGGACCCCTTAAATCTCCTGTAC 59.221 47.826 0.00 0.00 0.00 2.90
3308 3616 4.037927 CTGGACCCCTTAAATCTCCTGTA 58.962 47.826 0.00 0.00 0.00 2.74
3309 3617 2.846827 CTGGACCCCTTAAATCTCCTGT 59.153 50.000 0.00 0.00 0.00 4.00
3310 3618 2.422093 GCTGGACCCCTTAAATCTCCTG 60.422 54.545 0.00 0.00 0.00 3.86
3311 3619 1.847088 GCTGGACCCCTTAAATCTCCT 59.153 52.381 0.00 0.00 0.00 3.69
3312 3620 1.847088 AGCTGGACCCCTTAAATCTCC 59.153 52.381 0.00 0.00 0.00 3.71
3313 3621 3.201045 AGAAGCTGGACCCCTTAAATCTC 59.799 47.826 0.00 0.00 0.00 2.75
3314 3622 3.193782 AGAAGCTGGACCCCTTAAATCT 58.806 45.455 0.00 0.00 0.00 2.40
3315 3623 3.653835 AGAAGCTGGACCCCTTAAATC 57.346 47.619 0.00 0.00 0.00 2.17
3316 3624 5.530176 TTAAGAAGCTGGACCCCTTAAAT 57.470 39.130 0.00 0.00 0.00 1.40
3317 3625 5.074804 GTTTAAGAAGCTGGACCCCTTAAA 58.925 41.667 0.00 0.00 37.12 1.52
3318 3626 4.507869 GGTTTAAGAAGCTGGACCCCTTAA 60.508 45.833 0.00 0.00 0.00 1.85
3319 3627 3.009805 GGTTTAAGAAGCTGGACCCCTTA 59.990 47.826 0.00 0.00 0.00 2.69
3320 3628 2.225041 GGTTTAAGAAGCTGGACCCCTT 60.225 50.000 0.00 0.00 0.00 3.95
3321 3629 1.354705 GGTTTAAGAAGCTGGACCCCT 59.645 52.381 0.00 0.00 0.00 4.79
3322 3630 1.835494 GGTTTAAGAAGCTGGACCCC 58.165 55.000 0.00 0.00 0.00 4.95
3323 3631 1.450025 CGGTTTAAGAAGCTGGACCC 58.550 55.000 0.00 0.00 0.00 4.46
3324 3632 0.803117 GCGGTTTAAGAAGCTGGACC 59.197 55.000 0.00 0.00 0.00 4.46
3325 3633 0.803117 GGCGGTTTAAGAAGCTGGAC 59.197 55.000 0.00 0.00 0.00 4.02
3326 3634 0.398696 TGGCGGTTTAAGAAGCTGGA 59.601 50.000 0.00 0.00 0.00 3.86
3327 3635 0.521735 GTGGCGGTTTAAGAAGCTGG 59.478 55.000 0.00 0.00 0.00 4.85
3328 3636 1.234821 TGTGGCGGTTTAAGAAGCTG 58.765 50.000 0.00 0.00 0.00 4.24
3329 3637 2.200373 ATGTGGCGGTTTAAGAAGCT 57.800 45.000 0.00 0.00 0.00 3.74
3330 3638 2.745281 TGTATGTGGCGGTTTAAGAAGC 59.255 45.455 0.00 0.00 0.00 3.86
3331 3639 4.730613 GCATGTATGTGGCGGTTTAAGAAG 60.731 45.833 0.00 0.00 0.00 2.85
3332 3640 3.127895 GCATGTATGTGGCGGTTTAAGAA 59.872 43.478 0.00 0.00 0.00 2.52
3333 3641 2.680841 GCATGTATGTGGCGGTTTAAGA 59.319 45.455 0.00 0.00 0.00 2.10
3334 3642 2.421775 TGCATGTATGTGGCGGTTTAAG 59.578 45.455 0.00 0.00 0.00 1.85
3335 3643 2.162608 GTGCATGTATGTGGCGGTTTAA 59.837 45.455 0.00 0.00 0.00 1.52
3336 3644 1.740585 GTGCATGTATGTGGCGGTTTA 59.259 47.619 0.00 0.00 0.00 2.01
3337 3645 0.525761 GTGCATGTATGTGGCGGTTT 59.474 50.000 0.00 0.00 0.00 3.27
3338 3646 1.312371 GGTGCATGTATGTGGCGGTT 61.312 55.000 0.00 0.00 0.00 4.44
3339 3647 1.748879 GGTGCATGTATGTGGCGGT 60.749 57.895 0.00 0.00 0.00 5.68
3340 3648 1.439353 GAGGTGCATGTATGTGGCGG 61.439 60.000 0.00 0.00 0.00 6.13
3341 3649 0.744057 TGAGGTGCATGTATGTGGCG 60.744 55.000 0.00 0.00 0.00 5.69
3342 3650 0.734889 GTGAGGTGCATGTATGTGGC 59.265 55.000 0.00 0.00 0.00 5.01
3343 3651 2.112380 TGTGAGGTGCATGTATGTGG 57.888 50.000 0.00 0.00 0.00 4.17
3344 3652 3.690628 TCATTGTGAGGTGCATGTATGTG 59.309 43.478 0.00 0.00 0.00 3.21
3345 3653 3.691118 GTCATTGTGAGGTGCATGTATGT 59.309 43.478 0.00 0.00 0.00 2.29
3346 3654 3.943381 AGTCATTGTGAGGTGCATGTATG 59.057 43.478 0.00 0.00 0.00 2.39
3347 3655 4.226427 AGTCATTGTGAGGTGCATGTAT 57.774 40.909 0.00 0.00 0.00 2.29
3348 3656 3.701205 AGTCATTGTGAGGTGCATGTA 57.299 42.857 0.00 0.00 0.00 2.29
3349 3657 2.574006 AGTCATTGTGAGGTGCATGT 57.426 45.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.