Multiple sequence alignment - TraesCS2A01G156200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G156200 | chr2A | 100.000 | 5510 | 0 | 0 | 1 | 5510 | 103106283 | 103100774 | 0.000000e+00 | 10176.0 |
1 | TraesCS2A01G156200 | chr2A | 80.404 | 495 | 84 | 10 | 239 | 723 | 553049756 | 553049265 | 1.130000e-96 | 364.0 |
2 | TraesCS2A01G156200 | chr2A | 93.023 | 129 | 6 | 1 | 5382 | 5510 | 251390719 | 251390844 | 9.430000e-43 | 185.0 |
3 | TraesCS2A01G156200 | chr2A | 73.151 | 365 | 83 | 8 | 371 | 723 | 451014769 | 451014408 | 3.490000e-22 | 117.0 |
4 | TraesCS2A01G156200 | chr2A | 94.828 | 58 | 2 | 1 | 4793 | 4850 | 103101460 | 103101404 | 7.600000e-14 | 89.8 |
5 | TraesCS2A01G156200 | chr2A | 94.828 | 58 | 2 | 1 | 4824 | 4880 | 103101491 | 103101434 | 7.600000e-14 | 89.8 |
6 | TraesCS2A01G156200 | chr2A | 80.247 | 81 | 15 | 1 | 640 | 720 | 36881500 | 36881579 | 5.960000e-05 | 60.2 |
7 | TraesCS2A01G156200 | chr2B | 94.548 | 4072 | 141 | 34 | 779 | 4813 | 156597721 | 156593694 | 0.000000e+00 | 6215.0 |
8 | TraesCS2A01G156200 | chr2B | 92.176 | 524 | 31 | 8 | 4992 | 5510 | 156593472 | 156592954 | 0.000000e+00 | 732.0 |
9 | TraesCS2A01G156200 | chr2B | 82.745 | 765 | 106 | 14 | 13 | 754 | 156599316 | 156598555 | 0.000000e+00 | 658.0 |
10 | TraesCS2A01G156200 | chr2D | 89.103 | 1193 | 74 | 20 | 755 | 1893 | 106632684 | 106631494 | 0.000000e+00 | 1432.0 |
11 | TraesCS2A01G156200 | chr2D | 92.093 | 645 | 42 | 4 | 3124 | 3762 | 106630475 | 106629834 | 0.000000e+00 | 900.0 |
12 | TraesCS2A01G156200 | chr2D | 85.235 | 745 | 88 | 16 | 16 | 746 | 106637914 | 106637178 | 0.000000e+00 | 747.0 |
13 | TraesCS2A01G156200 | chr2D | 90.603 | 564 | 40 | 8 | 3756 | 4317 | 106629759 | 106629207 | 0.000000e+00 | 736.0 |
14 | TraesCS2A01G156200 | chr2D | 91.506 | 518 | 29 | 6 | 4993 | 5510 | 106628382 | 106627880 | 0.000000e+00 | 699.0 |
15 | TraesCS2A01G156200 | chr2D | 90.081 | 494 | 42 | 6 | 1919 | 2409 | 106631497 | 106631008 | 7.790000e-178 | 634.0 |
16 | TraesCS2A01G156200 | chr2D | 87.530 | 417 | 39 | 7 | 2487 | 2895 | 106631010 | 106630599 | 2.320000e-128 | 470.0 |
17 | TraesCS2A01G156200 | chr2D | 87.089 | 395 | 38 | 10 | 4369 | 4763 | 106629205 | 106628824 | 8.480000e-118 | 435.0 |
18 | TraesCS2A01G156200 | chr2D | 92.366 | 131 | 5 | 3 | 5380 | 5510 | 622711270 | 622711395 | 1.220000e-41 | 182.0 |
19 | TraesCS2A01G156200 | chr2D | 84.568 | 162 | 24 | 1 | 2965 | 3125 | 618204766 | 618204927 | 5.710000e-35 | 159.0 |
20 | TraesCS2A01G156200 | chr2D | 73.446 | 354 | 75 | 14 | 382 | 723 | 61450442 | 61450788 | 1.250000e-21 | 115.0 |
21 | TraesCS2A01G156200 | chr2D | 80.822 | 146 | 20 | 2 | 1140 | 1278 | 581247091 | 581246947 | 2.100000e-19 | 108.0 |
22 | TraesCS2A01G156200 | chr2D | 94.737 | 57 | 3 | 0 | 4757 | 4813 | 106628660 | 106628604 | 7.600000e-14 | 89.8 |
23 | TraesCS2A01G156200 | chr1A | 79.928 | 553 | 101 | 7 | 179 | 723 | 369999433 | 369998883 | 1.110000e-106 | 398.0 |
24 | TraesCS2A01G156200 | chr7D | 82.353 | 442 | 74 | 4 | 179 | 619 | 25058611 | 25058173 | 1.120000e-101 | 381.0 |
25 | TraesCS2A01G156200 | chr7D | 76.190 | 273 | 52 | 8 | 462 | 723 | 186395480 | 186395750 | 1.250000e-26 | 132.0 |
26 | TraesCS2A01G156200 | chr3D | 79.348 | 552 | 102 | 8 | 179 | 723 | 529837915 | 529838461 | 1.450000e-100 | 377.0 |
27 | TraesCS2A01G156200 | chr7B | 80.388 | 464 | 81 | 9 | 179 | 638 | 687549813 | 687549356 | 1.470000e-90 | 344.0 |
28 | TraesCS2A01G156200 | chr7B | 74.706 | 170 | 34 | 5 | 557 | 717 | 57587419 | 57587588 | 3.560000e-07 | 67.6 |
29 | TraesCS2A01G156200 | chr3A | 80.130 | 463 | 79 | 11 | 179 | 637 | 643213271 | 643213724 | 3.180000e-87 | 333.0 |
30 | TraesCS2A01G156200 | chr5D | 76.937 | 555 | 107 | 14 | 179 | 719 | 285841012 | 285841559 | 4.170000e-76 | 296.0 |
31 | TraesCS2A01G156200 | chr5D | 79.139 | 302 | 53 | 6 | 431 | 723 | 2134434 | 2134734 | 3.370000e-47 | 200.0 |
32 | TraesCS2A01G156200 | chr4D | 76.350 | 537 | 111 | 11 | 198 | 723 | 63078551 | 63078020 | 1.960000e-69 | 274.0 |
33 | TraesCS2A01G156200 | chr4D | 96.947 | 131 | 1 | 1 | 5380 | 5510 | 46139925 | 46139798 | 3.340000e-52 | 217.0 |
34 | TraesCS2A01G156200 | chr6A | 93.893 | 131 | 5 | 1 | 5380 | 5510 | 595732651 | 595732778 | 1.570000e-45 | 195.0 |
35 | TraesCS2A01G156200 | chr6A | 91.045 | 67 | 6 | 0 | 3057 | 3123 | 538046604 | 538046538 | 2.110000e-14 | 91.6 |
36 | TraesCS2A01G156200 | chr5B | 92.366 | 131 | 7 | 1 | 5380 | 5510 | 236414536 | 236414663 | 3.390000e-42 | 183.0 |
37 | TraesCS2A01G156200 | chr5B | 90.076 | 131 | 10 | 1 | 5380 | 5510 | 236737069 | 236737196 | 3.410000e-37 | 167.0 |
38 | TraesCS2A01G156200 | chr5B | 91.379 | 58 | 5 | 0 | 3066 | 3123 | 3849930 | 3849873 | 4.580000e-11 | 80.5 |
39 | TraesCS2A01G156200 | chr6D | 83.871 | 186 | 28 | 2 | 2943 | 3126 | 463865774 | 463865959 | 5.670000e-40 | 176.0 |
40 | TraesCS2A01G156200 | chr4A | 88.550 | 131 | 10 | 2 | 5380 | 5510 | 657667908 | 657667783 | 2.660000e-33 | 154.0 |
41 | TraesCS2A01G156200 | chr1B | 81.452 | 124 | 21 | 2 | 2972 | 3094 | 9984792 | 9984914 | 3.510000e-17 | 100.0 |
42 | TraesCS2A01G156200 | chr6B | 92.537 | 67 | 5 | 0 | 3057 | 3123 | 585531206 | 585531140 | 4.540000e-16 | 97.1 |
43 | TraesCS2A01G156200 | chr6B | 94.231 | 52 | 3 | 0 | 3074 | 3125 | 574463729 | 574463678 | 4.580000e-11 | 80.5 |
44 | TraesCS2A01G156200 | chrUn | 86.154 | 65 | 8 | 1 | 3033 | 3096 | 323923522 | 323923458 | 9.900000e-08 | 69.4 |
45 | TraesCS2A01G156200 | chr7A | 86.154 | 65 | 8 | 1 | 3033 | 3096 | 67678253 | 67678189 | 9.900000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G156200 | chr2A | 103100774 | 103106283 | 5509 | True | 10176.000 | 10176 | 100.00000 | 1 | 5510 | 1 | chr2A.!!$R1 | 5509 |
1 | TraesCS2A01G156200 | chr2B | 156592954 | 156599316 | 6362 | True | 2535.000 | 6215 | 89.82300 | 13 | 5510 | 3 | chr2B.!!$R1 | 5497 |
2 | TraesCS2A01G156200 | chr2D | 106637178 | 106637914 | 736 | True | 747.000 | 747 | 85.23500 | 16 | 746 | 1 | chr2D.!!$R1 | 730 |
3 | TraesCS2A01G156200 | chr2D | 106627880 | 106632684 | 4804 | True | 674.475 | 1432 | 90.34275 | 755 | 5510 | 8 | chr2D.!!$R3 | 4755 |
4 | TraesCS2A01G156200 | chr1A | 369998883 | 369999433 | 550 | True | 398.000 | 398 | 79.92800 | 179 | 723 | 1 | chr1A.!!$R1 | 544 |
5 | TraesCS2A01G156200 | chr3D | 529837915 | 529838461 | 546 | False | 377.000 | 377 | 79.34800 | 179 | 723 | 1 | chr3D.!!$F1 | 544 |
6 | TraesCS2A01G156200 | chr5D | 285841012 | 285841559 | 547 | False | 296.000 | 296 | 76.93700 | 179 | 719 | 1 | chr5D.!!$F2 | 540 |
7 | TraesCS2A01G156200 | chr4D | 63078020 | 63078551 | 531 | True | 274.000 | 274 | 76.35000 | 198 | 723 | 1 | chr4D.!!$R2 | 525 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
479 | 489 | 0.034198 | TCGGTCGGCATTTGTCTTCA | 59.966 | 50.000 | 0.0 | 0.0 | 0.00 | 3.02 | F |
668 | 702 | 0.677414 | GAGAGAGGGACGAAGACGGT | 60.677 | 60.000 | 0.0 | 0.0 | 44.46 | 4.83 | F |
1202 | 2077 | 1.004610 | CTATGTCATTCCTTGCGTGCG | 60.005 | 52.381 | 0.0 | 0.0 | 0.00 | 5.34 | F |
1671 | 2554 | 0.601558 | TCGTGGTGCTTCTCCAGTAC | 59.398 | 55.000 | 0.0 | 0.0 | 37.39 | 2.73 | F |
2181 | 3081 | 1.211949 | ACCTCTCCCTCTCTCTTCTCG | 59.788 | 57.143 | 0.0 | 0.0 | 0.00 | 4.04 | F |
4053 | 5133 | 1.449601 | CCGTGGTATGCCCTCACAC | 60.450 | 63.158 | 0.0 | 0.0 | 0.00 | 3.82 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1550 | 2425 | 0.035630 | AAGCATCTGTCCAGGAGTGC | 60.036 | 55.000 | 7.63 | 7.63 | 34.41 | 4.40 | R |
1620 | 2503 | 2.044492 | TCCAGGAGTTCCACCATCTAGT | 59.956 | 50.000 | 0.28 | 0.00 | 38.89 | 2.57 | R |
3087 | 4082 | 1.620819 | CAGGATATGCCTCTTAGCGGT | 59.379 | 52.381 | 0.00 | 0.00 | 46.97 | 5.68 | R |
3615 | 4610 | 4.617808 | GTCAGTGACGCTAAGATGAGTA | 57.382 | 45.455 | 7.68 | 0.00 | 0.00 | 2.59 | R |
4156 | 5236 | 2.542618 | CGTCTGAGGTTGGATCGATGAG | 60.543 | 54.545 | 0.54 | 0.00 | 0.00 | 2.90 | R |
5167 | 6523 | 0.044092 | TGGGATAAGAGGGGCTGTGA | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
59 | 60 | 3.270027 | CTTGCCATGTCGACAATCCTTA | 58.730 | 45.455 | 24.13 | 5.94 | 0.00 | 2.69 |
73 | 74 | 7.067737 | TCGACAATCCTTATTTGGGAAAATACC | 59.932 | 37.037 | 0.00 | 0.00 | 36.37 | 2.73 |
169 | 170 | 7.633361 | TTTCACACGTAATCTCAGTCTAAAC | 57.367 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
191 | 192 | 4.220602 | ACTTTTCACAGTTTCTTGTGCCTT | 59.779 | 37.500 | 1.43 | 0.00 | 46.24 | 4.35 |
294 | 302 | 3.203161 | GGAGAACTCCGTTTTTCATGC | 57.797 | 47.619 | 5.06 | 0.00 | 40.36 | 4.06 |
336 | 344 | 2.001076 | TTGTGTCCTGCTCAGAGAGA | 57.999 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
381 | 389 | 8.843308 | TGAAGATGAAATAAAATTCTCCCCAT | 57.157 | 30.769 | 0.00 | 0.00 | 0.00 | 4.00 |
418 | 427 | 3.119245 | GGTGGTGTTTCTAGCATAGTCGA | 60.119 | 47.826 | 0.00 | 0.00 | 40.38 | 4.20 |
423 | 432 | 4.021229 | TGTTTCTAGCATAGTCGAAGGGA | 58.979 | 43.478 | 0.00 | 0.00 | 40.38 | 4.20 |
479 | 489 | 0.034198 | TCGGTCGGCATTTGTCTTCA | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
517 | 538 | 6.199908 | GGATCTTGTCTTCATTCGTCTATGTG | 59.800 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
527 | 548 | 3.282831 | TCGTCTATGTGTGTGTGTCTG | 57.717 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
535 | 556 | 1.068588 | GTGTGTGTGTCTGTAGGCTGA | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
548 | 569 | 5.045651 | TCTGTAGGCTGAATCCTTTTGATCA | 60.046 | 40.000 | 0.00 | 0.00 | 37.66 | 2.92 |
571 | 592 | 1.358725 | CTTTTCTTCATCGGCGGCGA | 61.359 | 55.000 | 36.40 | 36.40 | 0.00 | 5.54 |
591 | 612 | 1.727511 | TTGCTGTTCTGGTGTGCTGC | 61.728 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
599 | 620 | 2.466846 | TCTGGTGTGCTGCTCCTATAA | 58.533 | 47.619 | 0.00 | 0.00 | 0.00 | 0.98 |
607 | 628 | 3.045634 | TGCTGCTCCTATAAGGCCTTAA | 58.954 | 45.455 | 28.50 | 16.27 | 34.61 | 1.85 |
611 | 632 | 3.135895 | TGCTCCTATAAGGCCTTAACACC | 59.864 | 47.826 | 28.50 | 14.81 | 34.61 | 4.16 |
619 | 640 | 3.525800 | AGGCCTTAACACCATGACTTT | 57.474 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
620 | 641 | 3.844640 | AGGCCTTAACACCATGACTTTT | 58.155 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
624 | 645 | 4.069304 | CCTTAACACCATGACTTTTCGGA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.55 |
644 | 678 | 4.750098 | CGGATGTCTATTACAATTCGGCTT | 59.250 | 41.667 | 0.00 | 0.00 | 42.70 | 4.35 |
652 | 686 | 7.224753 | GTCTATTACAATTCGGCTTCAATGAGA | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
658 | 692 | 0.826715 | CGGCTTCAATGAGAGAGGGA | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
668 | 702 | 0.677414 | GAGAGAGGGACGAAGACGGT | 60.677 | 60.000 | 0.00 | 0.00 | 44.46 | 4.83 |
711 | 746 | 4.688879 | CCAATGCTTGTAGTCGTTGTTAGA | 59.311 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
724 | 763 | 4.400251 | TCGTTGTTAGATGGTCTACGGATT | 59.600 | 41.667 | 0.00 | 0.00 | 33.08 | 3.01 |
740 | 779 | 5.183014 | ACGGATTTTTCTGGTGTTCTTTC | 57.817 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
747 | 786 | 7.473027 | TTTTTCTGGTGTTCTTTCTACTACG | 57.527 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1188 | 2063 | 3.005684 | CCACTCCTGCATCTCTCTATGTC | 59.994 | 52.174 | 0.00 | 0.00 | 0.00 | 3.06 |
1194 | 2069 | 4.283978 | CCTGCATCTCTCTATGTCATTCCT | 59.716 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1197 | 2072 | 4.451774 | GCATCTCTCTATGTCATTCCTTGC | 59.548 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
1202 | 2077 | 1.004610 | CTATGTCATTCCTTGCGTGCG | 60.005 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
1203 | 2078 | 2.202349 | GTCATTCCTTGCGTGCGC | 60.202 | 61.111 | 9.85 | 9.85 | 42.35 | 6.09 |
1242 | 2117 | 1.129437 | GCTTCGTGCTCAACAATCTCC | 59.871 | 52.381 | 0.00 | 0.00 | 38.95 | 3.71 |
1296 | 2171 | 1.141645 | GTGGTGTTCGACGTTATGCA | 58.858 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
1300 | 2175 | 2.029244 | GGTGTTCGACGTTATGCATGAG | 59.971 | 50.000 | 10.16 | 2.80 | 0.00 | 2.90 |
1341 | 2216 | 2.939103 | GCAACGCTGATATCCAGTTCTT | 59.061 | 45.455 | 0.00 | 0.00 | 44.71 | 2.52 |
1386 | 2261 | 2.183478 | TGTACTGTGGAATGCCTGTG | 57.817 | 50.000 | 0.00 | 0.00 | 34.31 | 3.66 |
1457 | 2332 | 2.880268 | TCTTGACAGACATGTTGCTTGG | 59.120 | 45.455 | 0.00 | 0.00 | 40.68 | 3.61 |
1519 | 2394 | 6.017026 | GGCTAGTGATTTATTCAGGCTAAACC | 60.017 | 42.308 | 0.00 | 0.00 | 34.17 | 3.27 |
1530 | 2405 | 1.839424 | GGCTAAACCTGTCATGGCTT | 58.161 | 50.000 | 0.00 | 0.00 | 34.51 | 4.35 |
1532 | 2407 | 2.162681 | GCTAAACCTGTCATGGCTTGT | 58.837 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1533 | 2408 | 2.162408 | GCTAAACCTGTCATGGCTTGTC | 59.838 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1535 | 2410 | 1.237285 | AACCTGTCATGGCTTGTCGC | 61.237 | 55.000 | 0.00 | 0.00 | 38.13 | 5.19 |
1551 | 2426 | 4.043200 | GCCTGGCGTTCCTTGTGC | 62.043 | 66.667 | 1.35 | 0.00 | 0.00 | 4.57 |
1552 | 2427 | 2.594303 | CCTGGCGTTCCTTGTGCA | 60.594 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
1553 | 2428 | 2.639286 | CTGGCGTTCCTTGTGCAC | 59.361 | 61.111 | 10.75 | 10.75 | 0.00 | 4.57 |
1554 | 2429 | 1.893808 | CTGGCGTTCCTTGTGCACT | 60.894 | 57.895 | 19.41 | 0.00 | 0.00 | 4.40 |
1558 | 2441 | 1.845809 | GCGTTCCTTGTGCACTCCTG | 61.846 | 60.000 | 19.41 | 4.20 | 0.00 | 3.86 |
1620 | 2503 | 1.405105 | GCCACTTGCACTTTCAGTTGA | 59.595 | 47.619 | 0.00 | 0.00 | 40.77 | 3.18 |
1621 | 2504 | 2.796032 | GCCACTTGCACTTTCAGTTGAC | 60.796 | 50.000 | 0.00 | 0.00 | 40.77 | 3.18 |
1628 | 2511 | 4.318332 | TGCACTTTCAGTTGACTAGATGG | 58.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1634 | 2517 | 4.537135 | TCAGTTGACTAGATGGTGGAAC | 57.463 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
1660 | 2543 | 2.253603 | GATTTCATGCTTTCGTGGTGC | 58.746 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
1666 | 2549 | 0.884704 | TGCTTTCGTGGTGCTTCTCC | 60.885 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1671 | 2554 | 0.601558 | TCGTGGTGCTTCTCCAGTAC | 59.398 | 55.000 | 0.00 | 0.00 | 37.39 | 2.73 |
1737 | 2636 | 5.534654 | GGAGAATCTGTACTCTGCTATCTGT | 59.465 | 44.000 | 0.00 | 0.00 | 34.11 | 3.41 |
1903 | 2802 | 4.926238 | TGCTTTTCTGCTTTGAACGAAAAA | 59.074 | 33.333 | 0.00 | 0.00 | 35.64 | 1.94 |
2086 | 2986 | 4.454728 | TCAGGGCTGAATACAATTTTGC | 57.545 | 40.909 | 0.00 | 0.00 | 36.53 | 3.68 |
2089 | 2989 | 2.923020 | GGGCTGAATACAATTTTGCGTG | 59.077 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2181 | 3081 | 1.211949 | ACCTCTCCCTCTCTCTTCTCG | 59.788 | 57.143 | 0.00 | 0.00 | 0.00 | 4.04 |
2258 | 3159 | 6.895040 | GCGTTTGTATCTTCAATTCTAAGTCG | 59.105 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
2431 | 3332 | 5.426504 | TGGTTTTGATTGCAAGTGTGAAAT | 58.573 | 33.333 | 4.94 | 0.00 | 35.51 | 2.17 |
2810 | 3720 | 7.178274 | TGGCTAAATCTTTCTCAATAGGCAAAA | 59.822 | 33.333 | 4.64 | 0.00 | 41.21 | 2.44 |
2811 | 3721 | 8.200120 | GGCTAAATCTTTCTCAATAGGCAAAAT | 58.800 | 33.333 | 0.00 | 0.00 | 36.35 | 1.82 |
2812 | 3722 | 9.242477 | GCTAAATCTTTCTCAATAGGCAAAATC | 57.758 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2958 | 3952 | 4.769488 | TGGTCAGCATGGTTTTAAATAGCA | 59.231 | 37.500 | 0.00 | 0.00 | 36.16 | 3.49 |
2993 | 3987 | 6.496571 | CACTATAGTGTTTAGAAGAGGTCCG | 58.503 | 44.000 | 22.48 | 0.00 | 40.96 | 4.79 |
3004 | 3998 | 2.687566 | AGGTCCGGTGCTAAGGGG | 60.688 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3087 | 4082 | 4.037684 | GCTATAGCGTTTAGAAGAGGTCCA | 59.962 | 45.833 | 9.40 | 0.00 | 0.00 | 4.02 |
3577 | 4572 | 9.747898 | TTCTACTTGGAAATGCTCCTAAATTAA | 57.252 | 29.630 | 0.00 | 0.00 | 45.64 | 1.40 |
3627 | 4622 | 9.534565 | TGTGTTCATATTCTTACTCATCTTAGC | 57.465 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
4053 | 5133 | 1.449601 | CCGTGGTATGCCCTCACAC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
4156 | 5236 | 3.744942 | GTCCTGTTTAGGGAAGAACGTTC | 59.255 | 47.826 | 20.71 | 20.71 | 44.70 | 3.95 |
4269 | 5349 | 0.832135 | TGACTGGGGAGTGGACTGAC | 60.832 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4333 | 5413 | 7.312657 | TCTGAGATACACAATTTCTTGATGC | 57.687 | 36.000 | 0.00 | 0.00 | 36.20 | 3.91 |
4342 | 5422 | 7.246311 | ACACAATTTCTTGATGCTTCGATTAG | 58.754 | 34.615 | 0.00 | 0.00 | 36.20 | 1.73 |
4347 | 5427 | 9.512435 | AATTTCTTGATGCTTCGATTAGAATTG | 57.488 | 29.630 | 0.00 | 0.00 | 38.34 | 2.32 |
4358 | 5438 | 5.037385 | TCGATTAGAATTGCTTGACTCTCG | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
4366 | 5446 | 8.397575 | AGAATTGCTTGACTCTCGTATATAGA | 57.602 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
4488 | 5568 | 1.003233 | GGAGCGCTTGAAAGACCCT | 60.003 | 57.895 | 13.26 | 0.00 | 0.00 | 4.34 |
4536 | 5616 | 4.198530 | TGAGCAGACACATGTTTTCAGAA | 58.801 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
4537 | 5617 | 4.035558 | TGAGCAGACACATGTTTTCAGAAC | 59.964 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4539 | 5619 | 3.066621 | GCAGACACATGTTTTCAGAACCA | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
4574 | 5654 | 5.755861 | CCTTAGCTGTAGAAATTCTGTAGGC | 59.244 | 44.000 | 5.64 | 5.09 | 0.00 | 3.93 |
4577 | 5657 | 5.181748 | AGCTGTAGAAATTCTGTAGGCAAG | 58.818 | 41.667 | 5.64 | 0.00 | 0.00 | 4.01 |
4583 | 5663 | 0.548510 | ATTCTGTAGGCAAGGGAGGC | 59.451 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4609 | 5689 | 2.619849 | CCTGATGTTTGGAGGAGCACAT | 60.620 | 50.000 | 0.00 | 0.00 | 32.41 | 3.21 |
4620 | 5700 | 2.099756 | GAGGAGCACATTTTACATGGCC | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
4658 | 5738 | 4.879104 | TTGGCAAAAGAGCAAATTGTTG | 57.121 | 36.364 | 0.00 | 0.00 | 37.83 | 3.33 |
4659 | 5739 | 3.871485 | TGGCAAAAGAGCAAATTGTTGT | 58.129 | 36.364 | 0.00 | 0.00 | 37.06 | 3.32 |
4660 | 5740 | 4.260170 | TGGCAAAAGAGCAAATTGTTGTT | 58.740 | 34.783 | 0.00 | 0.00 | 37.06 | 2.83 |
4661 | 5741 | 5.423015 | TGGCAAAAGAGCAAATTGTTGTTA | 58.577 | 33.333 | 0.00 | 0.00 | 37.06 | 2.41 |
4662 | 5742 | 5.877012 | TGGCAAAAGAGCAAATTGTTGTTAA | 59.123 | 32.000 | 0.00 | 0.00 | 37.06 | 2.01 |
4663 | 5743 | 6.036953 | TGGCAAAAGAGCAAATTGTTGTTAAG | 59.963 | 34.615 | 0.00 | 0.00 | 37.06 | 1.85 |
4664 | 5744 | 6.421405 | GCAAAAGAGCAAATTGTTGTTAAGG | 58.579 | 36.000 | 0.00 | 0.00 | 37.06 | 2.69 |
4665 | 5745 | 6.421405 | CAAAAGAGCAAATTGTTGTTAAGGC | 58.579 | 36.000 | 0.00 | 0.00 | 37.06 | 4.35 |
4666 | 5746 | 4.935352 | AGAGCAAATTGTTGTTAAGGCA | 57.065 | 36.364 | 0.00 | 0.00 | 37.06 | 4.75 |
4667 | 5747 | 5.275067 | AGAGCAAATTGTTGTTAAGGCAA | 57.725 | 34.783 | 0.00 | 0.00 | 37.06 | 4.52 |
4672 | 5752 | 5.752955 | GCAAATTGTTGTTAAGGCAAGAGAA | 59.247 | 36.000 | 0.00 | 0.00 | 37.06 | 2.87 |
4675 | 5755 | 7.770801 | AATTGTTGTTAAGGCAAGAGAAAAC | 57.229 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4676 | 5756 | 4.915704 | TGTTGTTAAGGCAAGAGAAAACG | 58.084 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
4677 | 5757 | 3.619233 | TGTTAAGGCAAGAGAAAACGC | 57.381 | 42.857 | 0.00 | 0.00 | 0.00 | 4.84 |
4678 | 5758 | 3.211045 | TGTTAAGGCAAGAGAAAACGCT | 58.789 | 40.909 | 0.00 | 0.00 | 0.00 | 5.07 |
4680 | 5760 | 4.219802 | GTTAAGGCAAGAGAAAACGCTTC | 58.780 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4681 | 5761 | 1.239347 | AGGCAAGAGAAAACGCTTCC | 58.761 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4687 | 5767 | 4.065789 | CAAGAGAAAACGCTTCCTAGGTT | 58.934 | 43.478 | 9.08 | 0.00 | 0.00 | 3.50 |
4689 | 5769 | 5.479124 | AGAGAAAACGCTTCCTAGGTTTA | 57.521 | 39.130 | 9.08 | 0.00 | 33.80 | 2.01 |
4691 | 5771 | 4.964593 | AGAAAACGCTTCCTAGGTTTACA | 58.035 | 39.130 | 9.08 | 0.00 | 33.80 | 2.41 |
4692 | 5772 | 5.557866 | AGAAAACGCTTCCTAGGTTTACAT | 58.442 | 37.500 | 9.08 | 0.00 | 33.80 | 2.29 |
4700 | 5780 | 3.884895 | TCCTAGGTTTACATGCCATGTG | 58.115 | 45.455 | 20.36 | 1.45 | 44.60 | 3.21 |
4701 | 5781 | 2.358898 | CCTAGGTTTACATGCCATGTGC | 59.641 | 50.000 | 20.36 | 9.91 | 44.60 | 4.57 |
4707 | 5787 | 3.625649 | TTACATGCCATGTGCTGTAGA | 57.374 | 42.857 | 20.36 | 0.00 | 44.60 | 2.59 |
4708 | 5788 | 2.034104 | ACATGCCATGTGCTGTAGAG | 57.966 | 50.000 | 10.06 | 0.00 | 43.01 | 2.43 |
4709 | 5789 | 1.280133 | ACATGCCATGTGCTGTAGAGT | 59.720 | 47.619 | 10.06 | 0.00 | 43.01 | 3.24 |
4710 | 5790 | 2.501316 | ACATGCCATGTGCTGTAGAGTA | 59.499 | 45.455 | 10.06 | 0.00 | 43.01 | 2.59 |
4711 | 5791 | 2.672961 | TGCCATGTGCTGTAGAGTAC | 57.327 | 50.000 | 0.86 | 0.86 | 42.00 | 2.73 |
4716 | 5796 | 4.038042 | GCCATGTGCTGTAGAGTACTATGA | 59.962 | 45.833 | 15.99 | 0.00 | 35.90 | 2.15 |
4750 | 5831 | 6.204882 | CCTGAGACTTTTCGGAACTTTGTATT | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
4755 | 6006 | 8.727910 | AGACTTTTCGGAACTTTGTATTATTCC | 58.272 | 33.333 | 0.00 | 0.00 | 37.79 | 3.01 |
4789 | 6040 | 4.502105 | TGATGTCAAAGCTATTGCCCTA | 57.498 | 40.909 | 0.00 | 0.00 | 40.80 | 3.53 |
4815 | 6066 | 4.891037 | GCTGGGAGCCTGGGATGC | 62.891 | 72.222 | 0.00 | 0.00 | 34.48 | 3.91 |
4816 | 6067 | 3.095163 | CTGGGAGCCTGGGATGCT | 61.095 | 66.667 | 0.00 | 0.00 | 43.03 | 3.79 |
4817 | 6068 | 1.767672 | CTGGGAGCCTGGGATGCTA | 60.768 | 63.158 | 0.00 | 0.00 | 39.69 | 3.49 |
4818 | 6069 | 1.073474 | TGGGAGCCTGGGATGCTAT | 60.073 | 57.895 | 0.00 | 0.00 | 39.69 | 2.97 |
4819 | 6070 | 0.193321 | TGGGAGCCTGGGATGCTATA | 59.807 | 55.000 | 0.00 | 0.00 | 39.69 | 1.31 |
4820 | 6071 | 1.362224 | GGGAGCCTGGGATGCTATAA | 58.638 | 55.000 | 0.00 | 0.00 | 39.69 | 0.98 |
4821 | 6072 | 1.705186 | GGGAGCCTGGGATGCTATAAA | 59.295 | 52.381 | 0.00 | 0.00 | 39.69 | 1.40 |
4822 | 6073 | 2.310052 | GGGAGCCTGGGATGCTATAAAT | 59.690 | 50.000 | 0.00 | 0.00 | 39.69 | 1.40 |
4823 | 6074 | 3.245407 | GGGAGCCTGGGATGCTATAAATT | 60.245 | 47.826 | 0.00 | 0.00 | 39.69 | 1.82 |
4824 | 6075 | 4.411013 | GGAGCCTGGGATGCTATAAATTT | 58.589 | 43.478 | 0.00 | 0.00 | 39.69 | 1.82 |
4825 | 6076 | 4.835056 | GGAGCCTGGGATGCTATAAATTTT | 59.165 | 41.667 | 0.00 | 0.00 | 39.69 | 1.82 |
4826 | 6077 | 5.305386 | GGAGCCTGGGATGCTATAAATTTTT | 59.695 | 40.000 | 0.00 | 0.00 | 39.69 | 1.94 |
4827 | 6078 | 6.165700 | AGCCTGGGATGCTATAAATTTTTG | 57.834 | 37.500 | 0.00 | 0.00 | 37.28 | 2.44 |
4828 | 6079 | 5.070847 | AGCCTGGGATGCTATAAATTTTTGG | 59.929 | 40.000 | 0.00 | 0.00 | 37.28 | 3.28 |
4829 | 6080 | 5.742838 | GCCTGGGATGCTATAAATTTTTGGG | 60.743 | 44.000 | 0.00 | 0.00 | 0.00 | 4.12 |
4830 | 6081 | 5.289083 | TGGGATGCTATAAATTTTTGGGC | 57.711 | 39.130 | 0.00 | 0.00 | 0.00 | 5.36 |
4831 | 6082 | 4.968080 | TGGGATGCTATAAATTTTTGGGCT | 59.032 | 37.500 | 0.00 | 0.00 | 0.00 | 5.19 |
4832 | 6083 | 5.163322 | TGGGATGCTATAAATTTTTGGGCTG | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4833 | 6084 | 5.299949 | GGATGCTATAAATTTTTGGGCTGG | 58.700 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4834 | 6085 | 4.751767 | TGCTATAAATTTTTGGGCTGGG | 57.248 | 40.909 | 0.00 | 0.00 | 0.00 | 4.45 |
4835 | 6086 | 4.357325 | TGCTATAAATTTTTGGGCTGGGA | 58.643 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
4836 | 6087 | 4.405358 | TGCTATAAATTTTTGGGCTGGGAG | 59.595 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4837 | 6088 | 3.912496 | ATAAATTTTTGGGCTGGGAGC | 57.088 | 42.857 | 0.00 | 0.00 | 41.46 | 4.70 |
4859 | 6110 | 5.898972 | AGCCTGGGATGCTATAAAATTTTGA | 59.101 | 36.000 | 13.76 | 0.78 | 37.28 | 2.69 |
4864 | 6115 | 6.183360 | TGGGATGCTATAAAATTTTGAGCTGG | 60.183 | 38.462 | 26.75 | 10.41 | 33.89 | 4.85 |
4865 | 6116 | 6.218746 | GGATGCTATAAAATTTTGAGCTGGG | 58.781 | 40.000 | 26.75 | 9.66 | 33.89 | 4.45 |
4866 | 6117 | 6.040842 | GGATGCTATAAAATTTTGAGCTGGGA | 59.959 | 38.462 | 26.75 | 15.23 | 33.89 | 4.37 |
4867 | 6118 | 6.455360 | TGCTATAAAATTTTGAGCTGGGAG | 57.545 | 37.500 | 26.75 | 10.95 | 33.89 | 4.30 |
4868 | 6119 | 5.163519 | TGCTATAAAATTTTGAGCTGGGAGC | 60.164 | 40.000 | 26.75 | 17.28 | 42.84 | 4.70 |
4869 | 6120 | 4.743057 | ATAAAATTTTGAGCTGGGAGCC | 57.257 | 40.909 | 13.76 | 0.00 | 43.77 | 4.70 |
4872 | 6126 | 0.324091 | ATTTTGAGCTGGGAGCCTGG | 60.324 | 55.000 | 0.00 | 0.00 | 43.77 | 4.45 |
4873 | 6127 | 2.430704 | TTTTGAGCTGGGAGCCTGGG | 62.431 | 60.000 | 0.00 | 0.00 | 43.77 | 4.45 |
4874 | 6128 | 3.870607 | TTGAGCTGGGAGCCTGGGA | 62.871 | 63.158 | 0.00 | 0.00 | 43.77 | 4.37 |
4875 | 6129 | 2.771762 | GAGCTGGGAGCCTGGGAT | 60.772 | 66.667 | 0.00 | 0.00 | 43.77 | 3.85 |
4876 | 6130 | 3.095163 | AGCTGGGAGCCTGGGATG | 61.095 | 66.667 | 0.00 | 0.00 | 43.77 | 3.51 |
4877 | 6131 | 3.415087 | GCTGGGAGCCTGGGATGT | 61.415 | 66.667 | 0.00 | 0.00 | 34.48 | 3.06 |
4887 | 6141 | 1.871080 | CCTGGGATGTATCTCGTTGC | 58.129 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4924 | 6179 | 4.201724 | CGAGCAGCTTGTATTTACCACTTC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
4925 | 6180 | 4.651778 | AGCAGCTTGTATTTACCACTTCA | 58.348 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
4926 | 6181 | 4.455877 | AGCAGCTTGTATTTACCACTTCAC | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
4959 | 6314 | 4.800914 | GCAGTTTCAGCAAGAGTTCCTCTA | 60.801 | 45.833 | 0.00 | 0.00 | 40.28 | 2.43 |
4960 | 6315 | 5.300752 | CAGTTTCAGCAAGAGTTCCTCTAA | 58.699 | 41.667 | 0.00 | 0.00 | 40.28 | 2.10 |
4961 | 6316 | 5.760253 | CAGTTTCAGCAAGAGTTCCTCTAAA | 59.240 | 40.000 | 0.00 | 0.00 | 40.28 | 1.85 |
4962 | 6317 | 6.260936 | CAGTTTCAGCAAGAGTTCCTCTAAAA | 59.739 | 38.462 | 0.00 | 0.00 | 40.28 | 1.52 |
4963 | 6318 | 6.484977 | AGTTTCAGCAAGAGTTCCTCTAAAAG | 59.515 | 38.462 | 0.00 | 0.00 | 40.28 | 2.27 |
4964 | 6319 | 5.808366 | TCAGCAAGAGTTCCTCTAAAAGA | 57.192 | 39.130 | 0.00 | 0.00 | 40.28 | 2.52 |
4965 | 6320 | 6.174720 | TCAGCAAGAGTTCCTCTAAAAGAA | 57.825 | 37.500 | 0.00 | 0.00 | 40.28 | 2.52 |
4966 | 6321 | 6.591935 | TCAGCAAGAGTTCCTCTAAAAGAAA | 58.408 | 36.000 | 0.00 | 0.00 | 40.28 | 2.52 |
4967 | 6322 | 6.483640 | TCAGCAAGAGTTCCTCTAAAAGAAAC | 59.516 | 38.462 | 0.00 | 0.00 | 40.28 | 2.78 |
4968 | 6323 | 6.260936 | CAGCAAGAGTTCCTCTAAAAGAAACA | 59.739 | 38.462 | 0.00 | 0.00 | 40.28 | 2.83 |
4969 | 6324 | 7.001073 | AGCAAGAGTTCCTCTAAAAGAAACAT | 58.999 | 34.615 | 0.00 | 0.00 | 40.28 | 2.71 |
4970 | 6325 | 7.503902 | AGCAAGAGTTCCTCTAAAAGAAACATT | 59.496 | 33.333 | 0.00 | 0.00 | 40.28 | 2.71 |
4971 | 6326 | 8.138074 | GCAAGAGTTCCTCTAAAAGAAACATTT | 58.862 | 33.333 | 0.00 | 0.00 | 40.28 | 2.32 |
5016 | 6371 | 9.706846 | GGAAAAGAAACATTTTCAACAAGAATG | 57.293 | 29.630 | 12.46 | 0.00 | 46.41 | 2.67 |
5039 | 6394 | 2.164827 | TGGTGCTAAATGATGCTTGCTG | 59.835 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
5043 | 6398 | 2.424601 | GCTAAATGATGCTTGCTGGTGA | 59.575 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
5056 | 6411 | 4.906065 | TGCTGGTGAATTATCATGAAGC | 57.094 | 40.909 | 0.00 | 0.96 | 38.01 | 3.86 |
5064 | 6419 | 5.750067 | GTGAATTATCATGAAGCCGCAAAAT | 59.250 | 36.000 | 0.00 | 0.00 | 38.01 | 1.82 |
5065 | 6420 | 6.917477 | GTGAATTATCATGAAGCCGCAAAATA | 59.083 | 34.615 | 0.00 | 0.00 | 38.01 | 1.40 |
5066 | 6421 | 7.113965 | GTGAATTATCATGAAGCCGCAAAATAG | 59.886 | 37.037 | 0.00 | 0.00 | 38.01 | 1.73 |
5069 | 6424 | 4.621068 | TCATGAAGCCGCAAAATAGAAG | 57.379 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
5106 | 6462 | 4.967442 | TGCATTATCCCATCCAATTCCAAA | 59.033 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
5108 | 6464 | 6.101442 | TGCATTATCCCATCCAATTCCAAAAT | 59.899 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
5110 | 6466 | 8.323567 | GCATTATCCCATCCAATTCCAAAATAT | 58.676 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
5123 | 6479 | 9.480053 | CAATTCCAAAATATTAATACAGCCAGG | 57.520 | 33.333 | 0.00 | 0.00 | 0.00 | 4.45 |
5137 | 6493 | 1.355720 | AGCCAGGTTCCAGCTAAACAT | 59.644 | 47.619 | 11.90 | 3.53 | 34.38 | 2.71 |
5172 | 6529 | 1.598962 | CACTGCCAGTGGGTCACAG | 60.599 | 63.158 | 17.22 | 11.88 | 42.35 | 3.66 |
5195 | 6552 | 1.771255 | CCTCTTATCCCAACCCCAGAG | 59.229 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
5291 | 6649 | 3.920841 | ACTATAAAACCCCCTCCACAGTT | 59.079 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5320 | 6678 | 0.767060 | ACTCACCCCTTTCCCTTCGT | 60.767 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.983378 | AGTTCGGCAAGCCCTAGGAT | 60.983 | 55.000 | 11.48 | 0.00 | 0.00 | 3.24 |
1 | 2 | 1.612442 | AGTTCGGCAAGCCCTAGGA | 60.612 | 57.895 | 11.48 | 0.00 | 0.00 | 2.94 |
2 | 3 | 1.450312 | CAGTTCGGCAAGCCCTAGG | 60.450 | 63.158 | 0.06 | 0.06 | 0.00 | 3.02 |
3 | 4 | 0.036388 | TTCAGTTCGGCAAGCCCTAG | 60.036 | 55.000 | 5.34 | 0.00 | 0.00 | 3.02 |
4 | 5 | 0.321298 | GTTCAGTTCGGCAAGCCCTA | 60.321 | 55.000 | 5.34 | 0.00 | 0.00 | 3.53 |
5 | 6 | 1.600916 | GTTCAGTTCGGCAAGCCCT | 60.601 | 57.895 | 5.34 | 0.00 | 0.00 | 5.19 |
6 | 7 | 1.452145 | TTGTTCAGTTCGGCAAGCCC | 61.452 | 55.000 | 5.34 | 0.00 | 0.00 | 5.19 |
7 | 8 | 0.598065 | ATTGTTCAGTTCGGCAAGCC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
8 | 9 | 1.401539 | GGATTGTTCAGTTCGGCAAGC | 60.402 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
9 | 10 | 2.095567 | CAGGATTGTTCAGTTCGGCAAG | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
10 | 11 | 1.879380 | CAGGATTGTTCAGTTCGGCAA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
11 | 12 | 1.522668 | CAGGATTGTTCAGTTCGGCA | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
59 | 60 | 6.011481 | TCACGGTTAAGGTATTTTCCCAAAT | 58.989 | 36.000 | 0.00 | 0.00 | 36.52 | 2.32 |
136 | 137 | 7.827701 | TGAGATTACGTGTGAAAAGATAGACT | 58.172 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
137 | 138 | 7.755822 | ACTGAGATTACGTGTGAAAAGATAGAC | 59.244 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
138 | 139 | 7.827701 | ACTGAGATTACGTGTGAAAAGATAGA | 58.172 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
139 | 140 | 7.971168 | AGACTGAGATTACGTGTGAAAAGATAG | 59.029 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
140 | 141 | 7.827701 | AGACTGAGATTACGTGTGAAAAGATA | 58.172 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
141 | 142 | 6.692486 | AGACTGAGATTACGTGTGAAAAGAT | 58.308 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
143 | 144 | 7.869016 | TTAGACTGAGATTACGTGTGAAAAG | 57.131 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
149 | 150 | 7.924412 | TGAAAAGTTTAGACTGAGATTACGTGT | 59.076 | 33.333 | 0.00 | 0.00 | 35.91 | 4.49 |
151 | 152 | 7.924412 | TGTGAAAAGTTTAGACTGAGATTACGT | 59.076 | 33.333 | 0.00 | 0.00 | 35.91 | 3.57 |
152 | 153 | 8.294341 | TGTGAAAAGTTTAGACTGAGATTACG | 57.706 | 34.615 | 0.00 | 0.00 | 35.91 | 3.18 |
201 | 202 | 1.975407 | CGAGGTAGACCGGTGGTGT | 60.975 | 63.158 | 14.63 | 0.00 | 42.08 | 4.16 |
302 | 310 | 6.033966 | CAGGACACAAACTCTTAACAAAACC | 58.966 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
312 | 320 | 2.036992 | CTCTGAGCAGGACACAAACTCT | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
314 | 322 | 2.036992 | CTCTCTGAGCAGGACACAAACT | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
418 | 427 | 4.505742 | GGAGACAAATCTTCACACTCCCTT | 60.506 | 45.833 | 0.00 | 0.00 | 37.17 | 3.95 |
517 | 538 | 2.526304 | TTCAGCCTACAGACACACAC | 57.474 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
527 | 548 | 5.447818 | CGTTGATCAAAAGGATTCAGCCTAC | 60.448 | 44.000 | 10.35 | 0.00 | 37.26 | 3.18 |
535 | 556 | 6.089249 | AGAAAAGCGTTGATCAAAAGGATT | 57.911 | 33.333 | 10.35 | 4.97 | 36.00 | 3.01 |
548 | 569 | 0.165944 | CGCCGATGAAGAAAAGCGTT | 59.834 | 50.000 | 0.00 | 0.00 | 38.81 | 4.84 |
571 | 592 | 0.956633 | CAGCACACCAGAACAGCAAT | 59.043 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
591 | 612 | 5.071788 | TCATGGTGTTAAGGCCTTATAGGAG | 59.928 | 44.000 | 25.70 | 12.50 | 37.67 | 3.69 |
599 | 620 | 3.525800 | AAAGTCATGGTGTTAAGGCCT | 57.474 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
607 | 628 | 3.074412 | GACATCCGAAAAGTCATGGTGT | 58.926 | 45.455 | 0.00 | 0.00 | 32.68 | 4.16 |
611 | 632 | 7.770801 | TGTAATAGACATCCGAAAAGTCATG | 57.229 | 36.000 | 0.00 | 0.00 | 34.80 | 3.07 |
619 | 640 | 4.748102 | GCCGAATTGTAATAGACATCCGAA | 59.252 | 41.667 | 0.00 | 0.00 | 38.07 | 4.30 |
620 | 641 | 4.038763 | AGCCGAATTGTAATAGACATCCGA | 59.961 | 41.667 | 0.00 | 0.00 | 38.07 | 4.55 |
624 | 645 | 7.498900 | TCATTGAAGCCGAATTGTAATAGACAT | 59.501 | 33.333 | 0.00 | 0.00 | 38.07 | 3.06 |
644 | 678 | 2.755655 | GTCTTCGTCCCTCTCTCATTGA | 59.244 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
652 | 686 | 1.074423 | TCACCGTCTTCGTCCCTCT | 59.926 | 57.895 | 0.00 | 0.00 | 35.01 | 3.69 |
658 | 692 | 2.941964 | AAACGCGTCACCGTCTTCGT | 62.942 | 55.000 | 14.44 | 0.00 | 41.16 | 3.85 |
668 | 702 | 2.629210 | CGAGCCAAAAACGCGTCA | 59.371 | 55.556 | 14.44 | 0.00 | 0.00 | 4.35 |
711 | 746 | 4.261801 | CACCAGAAAAATCCGTAGACCAT | 58.738 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
724 | 763 | 6.576185 | ACGTAGTAGAAAGAACACCAGAAAA | 58.424 | 36.000 | 0.00 | 0.00 | 41.94 | 2.29 |
844 | 1694 | 2.738480 | CGGTTCGACCCAGTGGAA | 59.262 | 61.111 | 11.95 | 0.00 | 33.75 | 3.53 |
847 | 1709 | 2.261671 | CTCCGGTTCGACCCAGTG | 59.738 | 66.667 | 0.00 | 0.00 | 33.75 | 3.66 |
1014 | 1889 | 4.735132 | TACGTGTCCGCAGCTGCC | 62.735 | 66.667 | 32.07 | 19.02 | 37.70 | 4.85 |
1197 | 2072 | 0.596600 | ATTATACGGAGGTGCGCACG | 60.597 | 55.000 | 32.35 | 23.78 | 0.00 | 5.34 |
1202 | 2077 | 2.408050 | CAGAGCATTATACGGAGGTGC | 58.592 | 52.381 | 0.00 | 0.00 | 36.11 | 5.01 |
1203 | 2078 | 2.036475 | AGCAGAGCATTATACGGAGGTG | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1209 | 2084 | 2.097202 | GCACGAAGCAGAGCATTATACG | 60.097 | 50.000 | 0.00 | 0.00 | 44.79 | 3.06 |
1296 | 2171 | 1.078637 | ACATGCGCTCACTGCTCAT | 60.079 | 52.632 | 9.73 | 0.00 | 46.71 | 2.90 |
1300 | 2175 | 1.088340 | ATCAGACATGCGCTCACTGC | 61.088 | 55.000 | 9.73 | 0.00 | 38.57 | 4.40 |
1341 | 2216 | 1.770294 | AAAAGACCGCAGAACCCAAA | 58.230 | 45.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1386 | 2261 | 1.129064 | ACAACAAAACGACGTGGTCAC | 59.871 | 47.619 | 2.90 | 0.00 | 32.09 | 3.67 |
1468 | 2343 | 3.365265 | CACAAGGAACGCCAGGCC | 61.365 | 66.667 | 5.63 | 0.00 | 36.29 | 5.19 |
1535 | 2410 | 2.594303 | TGCACAAGGAACGCCAGG | 60.594 | 61.111 | 0.00 | 0.00 | 36.29 | 4.45 |
1536 | 2411 | 1.845809 | GAGTGCACAAGGAACGCCAG | 61.846 | 60.000 | 21.04 | 0.00 | 36.29 | 4.85 |
1537 | 2412 | 1.891919 | GAGTGCACAAGGAACGCCA | 60.892 | 57.895 | 21.04 | 0.00 | 36.29 | 5.69 |
1538 | 2413 | 2.617274 | GGAGTGCACAAGGAACGCC | 61.617 | 63.158 | 21.04 | 0.00 | 0.00 | 5.68 |
1540 | 2415 | 1.230635 | CCAGGAGTGCACAAGGAACG | 61.231 | 60.000 | 21.04 | 0.10 | 0.00 | 3.95 |
1541 | 2416 | 0.108585 | TCCAGGAGTGCACAAGGAAC | 59.891 | 55.000 | 21.04 | 2.02 | 0.00 | 3.62 |
1543 | 2418 | 1.053835 | TGTCCAGGAGTGCACAAGGA | 61.054 | 55.000 | 21.04 | 16.50 | 0.00 | 3.36 |
1544 | 2419 | 0.604780 | CTGTCCAGGAGTGCACAAGG | 60.605 | 60.000 | 21.04 | 14.42 | 0.00 | 3.61 |
1545 | 2420 | 0.394192 | TCTGTCCAGGAGTGCACAAG | 59.606 | 55.000 | 21.04 | 5.25 | 0.00 | 3.16 |
1547 | 2422 | 0.322648 | CATCTGTCCAGGAGTGCACA | 59.677 | 55.000 | 21.04 | 0.00 | 0.00 | 4.57 |
1548 | 2423 | 1.023513 | GCATCTGTCCAGGAGTGCAC | 61.024 | 60.000 | 9.40 | 9.40 | 34.39 | 4.57 |
1550 | 2425 | 0.035630 | AAGCATCTGTCCAGGAGTGC | 60.036 | 55.000 | 7.63 | 7.63 | 34.41 | 4.40 |
1551 | 2426 | 2.486472 | AAAGCATCTGTCCAGGAGTG | 57.514 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1552 | 2427 | 4.851639 | AATAAAGCATCTGTCCAGGAGT | 57.148 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
1553 | 2428 | 7.814264 | AATTAATAAAGCATCTGTCCAGGAG | 57.186 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1554 | 2429 | 7.833682 | TCAAATTAATAAAGCATCTGTCCAGGA | 59.166 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
1620 | 2503 | 2.044492 | TCCAGGAGTTCCACCATCTAGT | 59.956 | 50.000 | 0.28 | 0.00 | 38.89 | 2.57 |
1621 | 2504 | 2.752030 | TCCAGGAGTTCCACCATCTAG | 58.248 | 52.381 | 0.28 | 0.00 | 38.89 | 2.43 |
1628 | 2511 | 2.424956 | GCATGAAATCCAGGAGTTCCAC | 59.575 | 50.000 | 23.82 | 11.43 | 36.05 | 4.02 |
1634 | 2517 | 3.012518 | ACGAAAGCATGAAATCCAGGAG | 58.987 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
1660 | 2543 | 3.594134 | CTTTGGCTGAGTACTGGAGAAG | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1666 | 2549 | 2.568623 | AACCCTTTGGCTGAGTACTG | 57.431 | 50.000 | 0.00 | 0.00 | 33.59 | 2.74 |
1671 | 2554 | 6.772716 | ACATAACATATAACCCTTTGGCTGAG | 59.227 | 38.462 | 0.00 | 0.00 | 33.59 | 3.35 |
1903 | 2802 | 2.563620 | TGCAAGTTGAATCCATGCATGT | 59.436 | 40.909 | 24.58 | 6.98 | 41.67 | 3.21 |
2181 | 3081 | 7.158099 | AGCAATATTTTCTGGTCAAGGTTAC | 57.842 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
2620 | 3522 | 4.676924 | GCATTTTCGAGTCCAAACAAAGAG | 59.323 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
2745 | 3654 | 4.039151 | AGTGATAACTGATGAGAGCACG | 57.961 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2970 | 3964 | 5.593502 | CCGGACCTCTTCTAAACACTATAGT | 59.406 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3004 | 3998 | 3.563808 | TGTTCATGTGTTTAGACCAGTGC | 59.436 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3087 | 4082 | 1.620819 | CAGGATATGCCTCTTAGCGGT | 59.379 | 52.381 | 0.00 | 0.00 | 46.97 | 5.68 |
3538 | 4533 | 6.624352 | TCCAAGTAGAAAGATGCAATATGC | 57.376 | 37.500 | 0.00 | 0.00 | 45.29 | 3.14 |
3577 | 4572 | 8.370182 | ACAATTTCTGAATAAGCACTGGAAAAT | 58.630 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3615 | 4610 | 4.617808 | GTCAGTGACGCTAAGATGAGTA | 57.382 | 45.455 | 7.68 | 0.00 | 0.00 | 2.59 |
4053 | 5133 | 5.417811 | ACATGTGTCATAAAGCAGAGAGAG | 58.582 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
4107 | 5187 | 5.106948 | GCAGATCGAAGTTGAAACTGATCAA | 60.107 | 40.000 | 18.41 | 0.00 | 39.26 | 2.57 |
4156 | 5236 | 2.542618 | CGTCTGAGGTTGGATCGATGAG | 60.543 | 54.545 | 0.54 | 0.00 | 0.00 | 2.90 |
4333 | 5413 | 6.291532 | CGAGAGTCAAGCAATTCTAATCGAAG | 60.292 | 42.308 | 0.00 | 0.00 | 34.56 | 3.79 |
4536 | 5616 | 4.471386 | ACAGCTAAGGATATCTGTTGTGGT | 59.529 | 41.667 | 2.05 | 0.00 | 35.50 | 4.16 |
4537 | 5617 | 5.028549 | ACAGCTAAGGATATCTGTTGTGG | 57.971 | 43.478 | 2.05 | 0.00 | 35.50 | 4.17 |
4539 | 5619 | 7.661536 | TTCTACAGCTAAGGATATCTGTTGT | 57.338 | 36.000 | 2.05 | 7.68 | 38.87 | 3.32 |
4563 | 5643 | 1.064389 | GCCTCCCTTGCCTACAGAATT | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
4564 | 5644 | 0.548510 | GCCTCCCTTGCCTACAGAAT | 59.451 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4567 | 5647 | 2.592308 | GGCCTCCCTTGCCTACAG | 59.408 | 66.667 | 0.00 | 0.00 | 45.70 | 2.74 |
4583 | 5663 | 0.682209 | CCTCCAAACATCAGGCCTGG | 60.682 | 60.000 | 32.23 | 19.57 | 0.00 | 4.45 |
4588 | 5668 | 1.271543 | TGTGCTCCTCCAAACATCAGG | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4609 | 5689 | 2.208132 | ATCACCACGGCCATGTAAAA | 57.792 | 45.000 | 2.24 | 0.00 | 0.00 | 1.52 |
4620 | 5700 | 2.794350 | GCCAAAAGAAACAATCACCACG | 59.206 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
4650 | 5730 | 7.010091 | CGTTTTCTCTTGCCTTAACAACAATTT | 59.990 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4658 | 5738 | 3.898517 | AGCGTTTTCTCTTGCCTTAAC | 57.101 | 42.857 | 0.00 | 0.00 | 0.00 | 2.01 |
4659 | 5739 | 3.252458 | GGAAGCGTTTTCTCTTGCCTTAA | 59.748 | 43.478 | 0.00 | 0.00 | 28.95 | 1.85 |
4660 | 5740 | 2.812011 | GGAAGCGTTTTCTCTTGCCTTA | 59.188 | 45.455 | 0.00 | 0.00 | 28.95 | 2.69 |
4661 | 5741 | 1.609072 | GGAAGCGTTTTCTCTTGCCTT | 59.391 | 47.619 | 0.00 | 0.00 | 28.95 | 4.35 |
4662 | 5742 | 1.202818 | AGGAAGCGTTTTCTCTTGCCT | 60.203 | 47.619 | 0.00 | 0.00 | 34.33 | 4.75 |
4663 | 5743 | 1.239347 | AGGAAGCGTTTTCTCTTGCC | 58.761 | 50.000 | 0.00 | 0.00 | 34.33 | 4.52 |
4664 | 5744 | 2.416893 | CCTAGGAAGCGTTTTCTCTTGC | 59.583 | 50.000 | 1.05 | 0.00 | 34.08 | 4.01 |
4665 | 5745 | 3.665190 | ACCTAGGAAGCGTTTTCTCTTG | 58.335 | 45.455 | 17.98 | 0.00 | 0.00 | 3.02 |
4666 | 5746 | 4.353383 | AACCTAGGAAGCGTTTTCTCTT | 57.647 | 40.909 | 17.98 | 0.00 | 0.00 | 2.85 |
4667 | 5747 | 4.353383 | AAACCTAGGAAGCGTTTTCTCT | 57.647 | 40.909 | 17.98 | 0.00 | 0.00 | 3.10 |
4672 | 5752 | 3.439129 | GCATGTAAACCTAGGAAGCGTTT | 59.561 | 43.478 | 17.98 | 7.68 | 33.48 | 3.60 |
4675 | 5755 | 1.940613 | GGCATGTAAACCTAGGAAGCG | 59.059 | 52.381 | 17.98 | 0.00 | 0.00 | 4.68 |
4676 | 5756 | 2.999331 | TGGCATGTAAACCTAGGAAGC | 58.001 | 47.619 | 17.98 | 7.89 | 0.00 | 3.86 |
4677 | 5757 | 4.336433 | CACATGGCATGTAAACCTAGGAAG | 59.664 | 45.833 | 30.96 | 11.71 | 42.70 | 3.46 |
4678 | 5758 | 4.269183 | CACATGGCATGTAAACCTAGGAA | 58.731 | 43.478 | 30.96 | 0.00 | 42.70 | 3.36 |
4680 | 5760 | 2.358898 | GCACATGGCATGTAAACCTAGG | 59.641 | 50.000 | 30.96 | 17.56 | 42.70 | 3.02 |
4681 | 5761 | 3.698029 | GCACATGGCATGTAAACCTAG | 57.302 | 47.619 | 30.96 | 18.25 | 42.70 | 3.02 |
4700 | 5780 | 6.315091 | TCCGAATTCATAGTACTCTACAGC | 57.685 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
4701 | 5781 | 7.013464 | AGGTTCCGAATTCATAGTACTCTACAG | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
4707 | 5787 | 5.892119 | TCTCAGGTTCCGAATTCATAGTACT | 59.108 | 40.000 | 6.22 | 0.00 | 0.00 | 2.73 |
4708 | 5788 | 5.978322 | GTCTCAGGTTCCGAATTCATAGTAC | 59.022 | 44.000 | 6.22 | 0.00 | 0.00 | 2.73 |
4709 | 5789 | 5.892119 | AGTCTCAGGTTCCGAATTCATAGTA | 59.108 | 40.000 | 6.22 | 0.00 | 0.00 | 1.82 |
4710 | 5790 | 4.712337 | AGTCTCAGGTTCCGAATTCATAGT | 59.288 | 41.667 | 6.22 | 0.00 | 0.00 | 2.12 |
4711 | 5791 | 5.269505 | AGTCTCAGGTTCCGAATTCATAG | 57.730 | 43.478 | 6.22 | 0.00 | 0.00 | 2.23 |
4716 | 5796 | 3.746492 | CGAAAAGTCTCAGGTTCCGAATT | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4750 | 5831 | 8.993404 | TGACATCATAAACAATCCATGGAATA | 57.007 | 30.769 | 20.67 | 7.69 | 0.00 | 1.75 |
4755 | 6006 | 7.262772 | AGCTTTGACATCATAAACAATCCATG | 58.737 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
4802 | 6053 | 3.728385 | ATTTATAGCATCCCAGGCTCC | 57.272 | 47.619 | 0.00 | 0.00 | 42.62 | 4.70 |
4803 | 6054 | 6.218746 | CAAAAATTTATAGCATCCCAGGCTC | 58.781 | 40.000 | 0.00 | 0.00 | 42.62 | 4.70 |
4813 | 6064 | 4.357325 | TCCCAGCCCAAAAATTTATAGCA | 58.643 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
4814 | 6065 | 4.740634 | GCTCCCAGCCCAAAAATTTATAGC | 60.741 | 45.833 | 0.00 | 0.00 | 34.48 | 2.97 |
4815 | 6066 | 4.948847 | GCTCCCAGCCCAAAAATTTATAG | 58.051 | 43.478 | 0.00 | 0.00 | 34.48 | 1.31 |
4817 | 6068 | 3.912496 | GCTCCCAGCCCAAAAATTTAT | 57.088 | 42.857 | 0.00 | 0.00 | 34.48 | 1.40 |
4829 | 6080 | 4.891037 | GCATCCCAGGCTCCCAGC | 62.891 | 72.222 | 0.00 | 0.00 | 41.46 | 4.85 |
4830 | 6081 | 1.132554 | ATAGCATCCCAGGCTCCCAG | 61.133 | 60.000 | 0.00 | 0.00 | 42.62 | 4.45 |
4831 | 6082 | 0.193321 | TATAGCATCCCAGGCTCCCA | 59.807 | 55.000 | 0.00 | 0.00 | 42.62 | 4.37 |
4832 | 6083 | 1.362224 | TTATAGCATCCCAGGCTCCC | 58.638 | 55.000 | 0.00 | 0.00 | 42.62 | 4.30 |
4833 | 6084 | 3.508845 | TTTTATAGCATCCCAGGCTCC | 57.491 | 47.619 | 0.00 | 0.00 | 42.62 | 4.70 |
4834 | 6085 | 6.040842 | TCAAAATTTTATAGCATCCCAGGCTC | 59.959 | 38.462 | 2.44 | 0.00 | 42.62 | 4.70 |
4835 | 6086 | 5.898972 | TCAAAATTTTATAGCATCCCAGGCT | 59.101 | 36.000 | 2.44 | 0.00 | 45.18 | 4.58 |
4836 | 6087 | 6.160576 | TCAAAATTTTATAGCATCCCAGGC | 57.839 | 37.500 | 2.44 | 0.00 | 0.00 | 4.85 |
4837 | 6088 | 6.041296 | AGCTCAAAATTTTATAGCATCCCAGG | 59.959 | 38.462 | 26.70 | 5.38 | 33.30 | 4.45 |
4859 | 6110 | 2.551856 | TACATCCCAGGCTCCCAGCT | 62.552 | 60.000 | 0.00 | 0.00 | 41.99 | 4.24 |
4864 | 6115 | 0.605589 | CGAGATACATCCCAGGCTCC | 59.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4865 | 6116 | 1.333177 | ACGAGATACATCCCAGGCTC | 58.667 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4866 | 6117 | 1.414181 | CAACGAGATACATCCCAGGCT | 59.586 | 52.381 | 0.00 | 0.00 | 0.00 | 4.58 |
4867 | 6118 | 1.871080 | CAACGAGATACATCCCAGGC | 58.129 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4868 | 6119 | 1.414181 | AGCAACGAGATACATCCCAGG | 59.586 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
4869 | 6120 | 2.159043 | ACAGCAACGAGATACATCCCAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4872 | 6126 | 2.535984 | CGAACAGCAACGAGATACATCC | 59.464 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4873 | 6127 | 2.535984 | CCGAACAGCAACGAGATACATC | 59.464 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4874 | 6128 | 2.540515 | CCGAACAGCAACGAGATACAT | 58.459 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
4875 | 6129 | 1.990799 | CCGAACAGCAACGAGATACA | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4876 | 6130 | 0.645868 | GCCGAACAGCAACGAGATAC | 59.354 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4877 | 6131 | 0.530744 | AGCCGAACAGCAACGAGATA | 59.469 | 50.000 | 0.00 | 0.00 | 34.23 | 1.98 |
4887 | 6141 | 1.805945 | GCTCGTACCAGCCGAACAG | 60.806 | 63.158 | 0.27 | 0.00 | 33.34 | 3.16 |
4913 | 6168 | 4.724279 | ACTGGAAGGTGAAGTGGTAAAT | 57.276 | 40.909 | 0.00 | 0.00 | 39.30 | 1.40 |
4925 | 6180 | 2.301346 | CTGAAACTGCAACTGGAAGGT | 58.699 | 47.619 | 0.00 | 0.00 | 39.30 | 3.50 |
4926 | 6181 | 1.000938 | GCTGAAACTGCAACTGGAAGG | 60.001 | 52.381 | 0.00 | 0.00 | 39.30 | 3.46 |
4987 | 6342 | 9.500785 | TCTTGTTGAAAATGTTTCTTTTCCTTT | 57.499 | 25.926 | 6.78 | 0.00 | 42.06 | 3.11 |
4988 | 6343 | 9.500785 | TTCTTGTTGAAAATGTTTCTTTTCCTT | 57.499 | 25.926 | 6.78 | 0.00 | 42.06 | 3.36 |
4989 | 6344 | 9.671279 | ATTCTTGTTGAAAATGTTTCTTTTCCT | 57.329 | 25.926 | 6.78 | 0.00 | 42.06 | 3.36 |
4990 | 6345 | 9.706846 | CATTCTTGTTGAAAATGTTTCTTTTCC | 57.293 | 29.630 | 6.78 | 0.00 | 42.06 | 3.13 |
5016 | 6371 | 2.925563 | GCAAGCATCATTTAGCACCAAC | 59.074 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
5018 | 6373 | 2.164827 | CAGCAAGCATCATTTAGCACCA | 59.835 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
5027 | 6382 | 4.891168 | TGATAATTCACCAGCAAGCATCAT | 59.109 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
5028 | 6383 | 4.271661 | TGATAATTCACCAGCAAGCATCA | 58.728 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
5039 | 6394 | 2.618241 | TGCGGCTTCATGATAATTCACC | 59.382 | 45.455 | 0.00 | 0.00 | 33.85 | 4.02 |
5043 | 6398 | 7.275888 | TCTATTTTGCGGCTTCATGATAATT | 57.724 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5056 | 6411 | 6.481313 | TCTCATCAAGATCTTCTATTTTGCGG | 59.519 | 38.462 | 4.57 | 0.00 | 0.00 | 5.69 |
5064 | 6419 | 6.728089 | ATGCACTCTCATCAAGATCTTCTA | 57.272 | 37.500 | 4.57 | 0.00 | 32.19 | 2.10 |
5065 | 6420 | 5.617528 | ATGCACTCTCATCAAGATCTTCT | 57.382 | 39.130 | 4.57 | 0.00 | 32.19 | 2.85 |
5066 | 6421 | 7.118101 | GGATAATGCACTCTCATCAAGATCTTC | 59.882 | 40.741 | 4.57 | 0.00 | 32.19 | 2.87 |
5069 | 6424 | 5.642919 | GGGATAATGCACTCTCATCAAGATC | 59.357 | 44.000 | 0.00 | 0.00 | 32.19 | 2.75 |
5106 | 6462 | 5.770162 | GCTGGAACCTGGCTGTATTAATATT | 59.230 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
5108 | 6464 | 4.412199 | AGCTGGAACCTGGCTGTATTAATA | 59.588 | 41.667 | 9.90 | 0.00 | 34.82 | 0.98 |
5110 | 6466 | 2.576191 | AGCTGGAACCTGGCTGTATTAA | 59.424 | 45.455 | 9.90 | 0.00 | 34.82 | 1.40 |
5114 | 6470 | 1.651737 | TTAGCTGGAACCTGGCTGTA | 58.348 | 50.000 | 16.74 | 6.89 | 37.50 | 2.74 |
5120 | 6476 | 4.559153 | CCAAAATGTTTAGCTGGAACCTG | 58.441 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
5123 | 6479 | 3.989817 | CAGCCAAAATGTTTAGCTGGAAC | 59.010 | 43.478 | 16.62 | 1.82 | 40.85 | 3.62 |
5137 | 6493 | 0.823356 | GTGTGAGAGGCCAGCCAAAA | 60.823 | 55.000 | 12.03 | 0.00 | 38.92 | 2.44 |
5167 | 6523 | 0.044092 | TGGGATAAGAGGGGCTGTGA | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
5172 | 6529 | 1.537172 | GGGTTGGGATAAGAGGGGC | 59.463 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
5180 | 6537 | 5.486332 | AGATATTTCTCTGGGGTTGGGATA | 58.514 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
5195 | 6552 | 7.922382 | TGGATATTTCTCTGGGGAGATATTTC | 58.078 | 38.462 | 4.80 | 6.41 | 46.51 | 2.17 |
5291 | 6649 | 1.841556 | GGGGTGAGTGTGGGAGTGA | 60.842 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
5320 | 6678 | 4.344865 | GCCGCTGGGGTTTGGAGA | 62.345 | 66.667 | 12.70 | 0.00 | 38.44 | 3.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.