Multiple sequence alignment - TraesCS2A01G155500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G155500 chr2A 100.000 6755 0 0 1 6755 102671795 102678549 0.000000e+00 12475.0
1 TraesCS2A01G155500 chr2D 93.408 3459 121 44 1096 4462 106259152 106262595 0.000000e+00 5025.0
2 TraesCS2A01G155500 chr2D 96.172 2090 40 15 4461 6539 106262700 106264760 0.000000e+00 3380.0
3 TraesCS2A01G155500 chr2D 92.906 1015 43 11 1 1005 106257696 106258691 0.000000e+00 1448.0
4 TraesCS2A01G155500 chr2D 94.688 753 37 3 1 751 106241344 106242095 0.000000e+00 1166.0
5 TraesCS2A01G155500 chr2D 95.155 516 23 2 239 753 106233191 106233705 0.000000e+00 813.0
6 TraesCS2A01G155500 chr2D 95.652 161 7 0 4034 4194 134301488 134301648 6.720000e-65 259.0
7 TraesCS2A01G155500 chr2D 96.899 129 4 0 6627 6755 106264802 106264930 4.100000e-52 217.0
8 TraesCS2A01G155500 chr2D 100.000 80 0 0 6547 6626 28725179 28725100 1.520000e-31 148.0
9 TraesCS2A01G155500 chr2D 100.000 80 0 0 6547 6626 363019119 363019198 1.520000e-31 148.0
10 TraesCS2A01G155500 chr2D 100.000 80 0 0 6547 6626 628283753 628283674 1.520000e-31 148.0
11 TraesCS2A01G155500 chr2D 100.000 80 0 0 6547 6626 628287007 628286928 1.520000e-31 148.0
12 TraesCS2A01G155500 chr2B 94.290 2557 91 26 1507 4046 154901047 154903565 0.000000e+00 3862.0
13 TraesCS2A01G155500 chr2B 96.493 1283 33 6 4106 5387 154903731 154905002 0.000000e+00 2109.0
14 TraesCS2A01G155500 chr2B 90.228 788 26 17 763 1515 154900251 154901022 0.000000e+00 981.0
15 TraesCS2A01G155500 chr2B 97.959 441 8 1 5378 5817 154905418 154905858 0.000000e+00 763.0
16 TraesCS2A01G155500 chr2B 96.273 161 6 0 4034 4194 608226725 608226885 1.440000e-66 265.0
17 TraesCS2A01G155500 chr2B 88.406 69 6 2 6627 6693 154906539 154906607 1.560000e-11 82.4
18 TraesCS2A01G155500 chr7D 90.222 450 40 4 304 753 568321598 568322043 9.760000e-163 584.0
19 TraesCS2A01G155500 chr7D 89.764 127 6 1 62 181 568321472 568321598 9.070000e-34 156.0
20 TraesCS2A01G155500 chr7D 94.545 55 2 1 4 57 180223956 180223902 4.340000e-12 84.2
21 TraesCS2A01G155500 chr7A 89.556 450 44 3 304 753 656984591 656984145 9.830000e-158 568.0
22 TraesCS2A01G155500 chr7A 90.780 141 11 2 613 753 253538124 253538262 3.220000e-43 187.0
23 TraesCS2A01G155500 chr7A 88.430 121 7 1 68 181 656984711 656984591 9.130000e-29 139.0
24 TraesCS2A01G155500 chr4B 81.201 633 67 25 135 753 332562117 332561523 4.770000e-126 462.0
25 TraesCS2A01G155500 chr6B 81.043 633 68 25 135 753 63648316 63647722 2.220000e-124 457.0
26 TraesCS2A01G155500 chr6B 79.968 634 81 18 135 752 524049407 524050010 6.260000e-115 425.0
27 TraesCS2A01G155500 chr6B 94.578 166 7 2 4030 4194 226361514 226361678 8.690000e-64 255.0
28 TraesCS2A01G155500 chr6B 92.647 68 3 2 6299 6364 95327570 95327503 5.580000e-16 97.1
29 TraesCS2A01G155500 chr5B 81.051 628 67 24 135 748 686442511 686441922 2.870000e-123 453.0
30 TraesCS2A01G155500 chr5B 94.444 54 2 1 4 56 279585921 279585974 1.560000e-11 82.4
31 TraesCS2A01G155500 chr6A 78.039 510 56 19 137 602 15364734 15365231 3.100000e-68 270.0
32 TraesCS2A01G155500 chr6A 100.000 80 0 0 6547 6626 192821718 192821639 1.520000e-31 148.0
33 TraesCS2A01G155500 chr4A 93.678 174 10 1 4034 4206 137966979 137967152 6.720000e-65 259.0
34 TraesCS2A01G155500 chr4A 93.678 174 10 1 4034 4206 137972830 137972657 6.720000e-65 259.0
35 TraesCS2A01G155500 chr4A 92.143 140 10 1 613 752 550171319 550171181 5.340000e-46 196.0
36 TraesCS2A01G155500 chr4A 93.750 64 3 1 6298 6361 687153229 687153291 2.010000e-15 95.3
37 TraesCS2A01G155500 chr5D 94.545 165 8 1 4030 4194 529218163 529218326 3.130000e-63 254.0
38 TraesCS2A01G155500 chr5D 100.000 80 0 0 6547 6626 466512154 466512233 1.520000e-31 148.0
39 TraesCS2A01G155500 chr5D 90.278 72 3 3 6294 6364 489730877 489730809 2.590000e-14 91.6
40 TraesCS2A01G155500 chr5D 88.000 75 5 4 6296 6369 108133616 108133687 1.210000e-12 86.1
41 TraesCS2A01G155500 chr5D 94.444 54 2 1 4 56 439300610 439300557 1.560000e-11 82.4
42 TraesCS2A01G155500 chr7B 92.442 172 12 1 4028 4198 490207983 490208154 1.880000e-60 244.0
43 TraesCS2A01G155500 chr7B 93.750 64 3 1 6298 6361 620460737 620460799 2.010000e-15 95.3
44 TraesCS2A01G155500 chr7B 88.406 69 4 4 1 65 321354102 321354170 5.620000e-11 80.5
45 TraesCS2A01G155500 chr5A 92.086 139 10 1 613 751 535185177 535185040 1.920000e-45 195.0
46 TraesCS2A01G155500 chr5A 85.897 78 11 0 1252 1329 653032672 653032749 4.340000e-12 84.2
47 TraesCS2A01G155500 chrUn 100.000 80 0 0 6547 6626 453774545 453774466 1.520000e-31 148.0
48 TraesCS2A01G155500 chrUn 100.000 80 0 0 6547 6626 463114212 463114291 1.520000e-31 148.0
49 TraesCS2A01G155500 chr1A 100.000 80 0 0 6547 6626 554466951 554467030 1.520000e-31 148.0
50 TraesCS2A01G155500 chr6D 94.030 67 3 1 6298 6364 431266184 431266119 4.310000e-17 100.0
51 TraesCS2A01G155500 chr6D 96.226 53 2 0 4 56 17267809 17267757 3.360000e-13 87.9
52 TraesCS2A01G155500 chr6D 92.982 57 3 1 1 56 464428853 464428909 1.560000e-11 82.4
53 TraesCS2A01G155500 chr1D 92.308 65 4 1 6301 6364 48193816 48193880 2.590000e-14 91.6
54 TraesCS2A01G155500 chr1D 94.444 54 2 1 4 56 244628107 244628160 1.560000e-11 82.4
55 TraesCS2A01G155500 chr1B 83.168 101 12 4 6301 6400 306705610 306705514 3.360000e-13 87.9
56 TraesCS2A01G155500 chr4D 92.982 57 3 1 1 56 453466347 453466403 1.560000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G155500 chr2A 102671795 102678549 6754 False 12475.00 12475 100.00000 1 6755 1 chr2A.!!$F1 6754
1 TraesCS2A01G155500 chr2D 106257696 106264930 7234 False 2517.50 5025 94.84625 1 6755 4 chr2D.!!$F5 6754
2 TraesCS2A01G155500 chr2D 106241344 106242095 751 False 1166.00 1166 94.68800 1 751 1 chr2D.!!$F2 750
3 TraesCS2A01G155500 chr2D 106233191 106233705 514 False 813.00 813 95.15500 239 753 1 chr2D.!!$F1 514
4 TraesCS2A01G155500 chr2B 154900251 154906607 6356 False 1559.48 3862 93.47520 763 6693 5 chr2B.!!$F2 5930
5 TraesCS2A01G155500 chr7D 568321472 568322043 571 False 370.00 584 89.99300 62 753 2 chr7D.!!$F1 691
6 TraesCS2A01G155500 chr7A 656984145 656984711 566 True 353.50 568 88.99300 68 753 2 chr7A.!!$R1 685
7 TraesCS2A01G155500 chr4B 332561523 332562117 594 True 462.00 462 81.20100 135 753 1 chr4B.!!$R1 618
8 TraesCS2A01G155500 chr6B 63647722 63648316 594 True 457.00 457 81.04300 135 753 1 chr6B.!!$R1 618
9 TraesCS2A01G155500 chr6B 524049407 524050010 603 False 425.00 425 79.96800 135 752 1 chr6B.!!$F2 617
10 TraesCS2A01G155500 chr5B 686441922 686442511 589 True 453.00 453 81.05100 135 748 1 chr5B.!!$R1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 820 0.387622 CGGTCAATTTGTGGCAGCTG 60.388 55.000 10.11 10.11 31.37 4.24 F
1559 2064 0.438445 TTCTTCGCGTGCTGAAATCG 59.562 50.000 5.77 0.00 0.00 3.34 F
1933 2456 0.389817 TGGTCGTGACTGTATGCTGC 60.390 55.000 0.00 0.00 0.00 5.25 F
2216 2747 1.202348 GCACCAGGTAATTTCACCAGC 59.798 52.381 0.00 0.00 41.40 4.85 F
2577 3111 2.293399 ACCTTTCAAGCGTGACCAAATC 59.707 45.455 0.40 0.00 31.90 2.17 F
4154 4821 2.030540 GCTCCGTATGTAGTCCGCATTA 60.031 50.000 0.00 0.00 0.00 1.90 F
4552 5327 4.724279 ACTAACACCACCTCCTTGAATT 57.276 40.909 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 2189 0.657840 AGTGCAAACAAGACGCTCAC 59.342 50.000 0.00 0.00 0.00 3.51 R
2412 2944 1.130938 TGATGCGCATGTGTAAAGCAG 59.869 47.619 30.76 0.00 41.34 4.24 R
3102 3637 1.741770 CCACCTTGCTCACTACGGC 60.742 63.158 0.00 0.00 0.00 5.68 R
3549 4087 2.191128 ACTAGAAAGCTGGCAACTGG 57.809 50.000 0.00 0.00 35.79 4.00 R
4360 5028 2.697751 AGAGGCGCATAAGAGAATCAGT 59.302 45.455 10.83 0.00 37.82 3.41 R
5391 6592 4.142600 GGAGACTTACATGAACATGGCAAC 60.143 45.833 17.25 6.49 42.91 4.17 R
6207 7516 2.210116 TGACGCTCAGGAACAACTTTC 58.790 47.619 0.00 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.211279 AGGTGGGGAGCCTTTCCT 59.789 61.111 0.00 0.00 45.98 3.36
40 41 1.688187 GGAGCCTTTCCTCCCGGTA 60.688 63.158 0.00 0.00 44.60 4.02
43 44 1.077930 GCCTTTCCTCCCGGTAACC 60.078 63.158 0.00 0.00 0.00 2.85
48 49 3.054213 CCTTTCCTCCCGGTAACCATTTA 60.054 47.826 0.00 0.00 0.00 1.40
157 166 5.841957 AGACAACTGAATGGATTAATGGC 57.158 39.130 0.00 0.00 0.00 4.40
318 341 6.801539 TTTAAGGCTCTCTTACACACAATG 57.198 37.500 0.00 0.00 37.65 2.82
332 355 5.114780 ACACACAATGTCAGATGCTATCTC 58.885 41.667 0.00 0.00 36.54 2.75
348 371 2.768253 TCTCGGGTACGACTGAGTAA 57.232 50.000 12.55 0.00 45.59 2.24
432 455 6.175471 TCATGATTACCAATGCCTAGCTATG 58.825 40.000 0.00 0.00 0.00 2.23
533 556 6.721704 AGAAGTCTTTCAAGCCAGATTTTT 57.278 33.333 0.00 0.00 35.70 1.94
753 777 5.682862 GGATTGTTTTCACATGATGATACGC 59.317 40.000 0.00 0.00 37.11 4.42
754 778 5.878332 TTGTTTTCACATGATGATACGCT 57.122 34.783 0.00 0.00 37.11 5.07
755 779 5.878332 TGTTTTCACATGATGATACGCTT 57.122 34.783 0.00 0.00 37.11 4.68
757 781 6.771076 TGTTTTCACATGATGATACGCTTAC 58.229 36.000 0.00 0.00 37.11 2.34
759 783 7.762159 TGTTTTCACATGATGATACGCTTACTA 59.238 33.333 0.00 0.00 37.11 1.82
760 784 7.930513 TTTCACATGATGATACGCTTACTAG 57.069 36.000 0.00 0.00 37.11 2.57
761 785 6.635030 TCACATGATGATACGCTTACTAGT 57.365 37.500 0.00 0.00 29.99 2.57
792 820 0.387622 CGGTCAATTTGTGGCAGCTG 60.388 55.000 10.11 10.11 31.37 4.24
1018 1055 2.511600 GACACAGAATCCGCCCCG 60.512 66.667 0.00 0.00 0.00 5.73
1078 1119 1.436195 CGTCGCAGGGAGAGAGAGAG 61.436 65.000 0.00 0.00 0.00 3.20
1082 1123 1.680338 GCAGGGAGAGAGAGAGAGAC 58.320 60.000 0.00 0.00 0.00 3.36
1087 1128 1.843851 GGAGAGAGAGAGAGACAGGGA 59.156 57.143 0.00 0.00 0.00 4.20
1089 1130 1.846439 AGAGAGAGAGAGACAGGGAGG 59.154 57.143 0.00 0.00 0.00 4.30
1090 1131 0.926293 AGAGAGAGAGACAGGGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
1091 1132 0.755327 GAGAGAGAGACAGGGAGGGC 60.755 65.000 0.00 0.00 0.00 5.19
1092 1133 2.043450 AGAGAGACAGGGAGGGCG 60.043 66.667 0.00 0.00 0.00 6.13
1093 1134 3.151022 GAGAGACAGGGAGGGCGG 61.151 72.222 0.00 0.00 0.00 6.13
1506 1944 2.811317 GTCTGGTCGCTCCGCTTG 60.811 66.667 0.00 0.00 39.52 4.01
1559 2064 0.438445 TTCTTCGCGTGCTGAAATCG 59.562 50.000 5.77 0.00 0.00 3.34
1570 2075 1.401018 GCTGAAATCGTTCGGGTTTGG 60.401 52.381 0.00 0.00 40.08 3.28
1572 2077 0.594110 GAAATCGTTCGGGTTTGGCA 59.406 50.000 0.00 0.00 0.00 4.92
1589 2094 3.419943 TGGCATTTGTGTTGAGCTCATA 58.580 40.909 19.04 7.20 0.00 2.15
1615 2128 2.552315 CCCGTATTCCGATTGGATTTGG 59.448 50.000 1.37 5.37 45.91 3.28
1739 2252 3.320879 CTCGTGCCACCATCTGCCT 62.321 63.158 0.00 0.00 0.00 4.75
1822 2335 1.279271 GCGGGGCTTGTCCTATATGAT 59.721 52.381 0.00 0.00 34.39 2.45
1825 2338 4.759782 CGGGGCTTGTCCTATATGATTAG 58.240 47.826 0.00 0.00 34.39 1.73
1826 2339 4.223032 CGGGGCTTGTCCTATATGATTAGT 59.777 45.833 0.00 0.00 34.39 2.24
1854 2368 1.225854 GCATCTGCAACGAGTTCGC 60.226 57.895 0.73 4.33 41.35 4.70
1885 2408 4.127171 GCATATTTGCTTCGGAGGTTCTA 58.873 43.478 0.35 0.00 45.77 2.10
1918 2441 4.097741 TGGTTATGTTTATGCTGCATGGTC 59.902 41.667 24.59 13.93 0.00 4.02
1933 2456 0.389817 TGGTCGTGACTGTATGCTGC 60.390 55.000 0.00 0.00 0.00 5.25
1990 2513 4.511454 TCATAATTGCTCACGATGCTAACC 59.489 41.667 0.00 0.00 0.00 2.85
2047 2570 2.019249 TGCAAAGAGGCATGCTATGAC 58.981 47.619 18.92 0.00 42.97 3.06
2088 2611 2.609350 GCGGGTTGACATTCGTAAGTA 58.391 47.619 0.00 0.00 39.48 2.24
2099 2622 5.109903 ACATTCGTAAGTAGCCATTCACTC 58.890 41.667 0.00 0.00 39.48 3.51
2107 2630 1.375523 GCCATTCACTCGGGTTCGT 60.376 57.895 0.00 0.00 37.69 3.85
2110 2633 1.463444 CCATTCACTCGGGTTCGTTTC 59.537 52.381 0.00 0.00 37.69 2.78
2125 2648 5.795441 GGTTCGTTTCAATAGATTGTCTTGC 59.205 40.000 2.32 0.00 38.84 4.01
2126 2649 6.348540 GGTTCGTTTCAATAGATTGTCTTGCT 60.349 38.462 2.32 0.00 38.84 3.91
2141 2664 4.925054 TGTCTTGCTTATTCATTGCAAAGC 59.075 37.500 1.71 7.47 44.49 3.51
2147 2673 4.501921 GCTTATTCATTGCAAAGCTGTAGC 59.498 41.667 1.71 5.72 40.87 3.58
2205 2731 3.510531 TTTGTAACATGGCACCAGGTA 57.489 42.857 7.50 0.00 40.22 3.08
2216 2747 1.202348 GCACCAGGTAATTTCACCAGC 59.798 52.381 0.00 0.00 41.40 4.85
2231 2762 3.263170 TCACCAGCAACTGTATGGTATGT 59.737 43.478 10.73 2.93 45.52 2.29
2236 2767 7.497579 CACCAGCAACTGTATGGTATGTAATTA 59.502 37.037 10.73 0.00 45.52 1.40
2244 2776 6.292923 TGTATGGTATGTAATTAGTGGGTGC 58.707 40.000 0.00 0.00 0.00 5.01
2247 2779 4.193865 GGTATGTAATTAGTGGGTGCGTT 58.806 43.478 0.00 0.00 0.00 4.84
2382 2914 7.009174 CAGTGTTGTTTGTGGAAAATGTTAGAC 59.991 37.037 0.00 0.00 0.00 2.59
2412 2944 3.126001 TGGATGATTCCGGTATCTTGC 57.874 47.619 20.23 18.67 45.89 4.01
2426 2958 2.995466 TCTTGCTGCTTTACACATGC 57.005 45.000 0.00 0.00 0.00 4.06
2444 2976 2.425539 TGCGCATCAGTCAGAAATTGA 58.574 42.857 5.66 0.00 0.00 2.57
2448 2980 4.673580 GCGCATCAGTCAGAAATTGATGTT 60.674 41.667 0.30 0.00 46.17 2.71
2577 3111 2.293399 ACCTTTCAAGCGTGACCAAATC 59.707 45.455 0.40 0.00 31.90 2.17
2785 3319 4.140900 TCAATTCCACCTCCCCTAACAAAA 60.141 41.667 0.00 0.00 0.00 2.44
2877 3411 8.759641 CAGTATTCTCGAATTATCTCTTGGTTG 58.240 37.037 0.00 0.00 32.50 3.77
2988 3523 4.512944 TGAGACTGTTGTGATTTCAAGCTC 59.487 41.667 0.00 0.00 0.00 4.09
3152 3687 6.869695 ACCCATAATTTTTCCATCGGTTAAC 58.130 36.000 0.00 0.00 0.00 2.01
3484 4022 4.717877 ACGCATTCTTCCATCATTATCCA 58.282 39.130 0.00 0.00 0.00 3.41
3664 4202 4.083565 TGGACACCTTATAACCTTTTGCC 58.916 43.478 0.00 0.00 0.00 4.52
3751 4289 5.972107 AGCATGAAGTCAACTTGCTAATT 57.028 34.783 6.18 0.00 43.42 1.40
4096 4638 6.745116 TCAATAAGGACTACATACGGATGTG 58.255 40.000 23.85 14.95 46.11 3.21
4154 4821 2.030540 GCTCCGTATGTAGTCCGCATTA 60.031 50.000 0.00 0.00 0.00 1.90
4173 4840 8.119226 CCGCATTAGAATCTCTAAAAAGACTTG 58.881 37.037 0.50 0.00 41.72 3.16
4194 4861 7.112779 ACTTGTATTTAGGAATGGAGGAAGTG 58.887 38.462 0.00 0.00 0.00 3.16
4412 5080 7.803279 TCTGTAAGATACTCGCTAATCAGAA 57.197 36.000 0.00 0.00 38.67 3.02
4542 5317 4.909001 TGTGGGTTTATACTAACACCACC 58.091 43.478 16.87 0.00 42.45 4.61
4551 5326 7.504926 TTATACTAACACCACCTCCTTGAAT 57.495 36.000 0.00 0.00 0.00 2.57
4552 5327 4.724279 ACTAACACCACCTCCTTGAATT 57.276 40.909 0.00 0.00 0.00 2.17
4555 5330 6.415573 ACTAACACCACCTCCTTGAATTATC 58.584 40.000 0.00 0.00 0.00 1.75
4556 5331 4.927267 ACACCACCTCCTTGAATTATCA 57.073 40.909 0.00 0.00 0.00 2.15
4584 5359 7.611855 ACACAGTATCCTTTCTTATTCTTTGGG 59.388 37.037 0.00 0.00 0.00 4.12
4627 5402 5.363939 ACTTTGCATGATAGGTTCTAGCTC 58.636 41.667 0.00 0.00 0.00 4.09
4752 5527 8.764524 ATCTTCATAACGAGCCTAATGTTATC 57.235 34.615 0.00 0.00 36.84 1.75
4820 5596 4.739046 GCTAATGCGAGCAACTTCATAT 57.261 40.909 0.57 0.00 42.36 1.78
5174 5950 6.957631 TCCATCTAAACTTAGAATCCAGCAA 58.042 36.000 3.39 0.00 42.55 3.91
5222 5998 7.865385 GCCTGTTCAAAATGACAGTAAATGTTA 59.135 33.333 3.20 0.00 44.17 2.41
5301 6077 5.010112 TGAGGCTGCTAAGTATGTATCAGAC 59.990 44.000 0.00 0.00 0.00 3.51
5391 6592 6.821388 ACAGTACCCTCTTAATATTCTGCTG 58.179 40.000 0.00 0.00 0.00 4.41
5413 6614 4.455533 TGTTGCCATGTTCATGTAAGTCTC 59.544 41.667 11.13 0.00 0.00 3.36
5830 7032 9.725019 CCCATAGTTCTACAGCATATATCAAAA 57.275 33.333 0.00 0.00 0.00 2.44
5947 7152 8.429641 TCTGTAGAGAAATACCAACTTTCAACT 58.570 33.333 0.00 0.00 35.51 3.16
6032 7248 2.162681 GTCACTGCCAAAGTAGCCAAT 58.837 47.619 0.00 0.00 36.83 3.16
6033 7249 2.558359 GTCACTGCCAAAGTAGCCAATT 59.442 45.455 0.00 0.00 36.83 2.32
6150 7459 3.694566 AGTTTCCTCTGCAACGTTCTTTT 59.305 39.130 0.00 0.00 0.00 2.27
6172 7481 9.532697 CTTTTTGTGTGATTTTCAACAGAAAAG 57.467 29.630 8.99 9.11 42.57 2.27
6175 7484 8.824159 TTGTGTGATTTTCAACAGAAAAGAAA 57.176 26.923 8.99 0.00 42.57 2.52
6178 7487 9.528847 GTGTGATTTTCAACAGAAAAGAAAAAC 57.471 29.630 8.99 0.00 42.57 2.43
6179 7488 9.265901 TGTGATTTTCAACAGAAAAGAAAAACA 57.734 25.926 8.99 0.00 42.57 2.83
6207 7516 6.142817 CGTTGTTTTCTGGATTTTACCTCAG 58.857 40.000 0.00 0.00 0.00 3.35
6547 7863 7.633621 TGAATCGATCATGTCTTTTCTTATGC 58.366 34.615 0.00 0.00 31.50 3.14
6549 7865 8.893219 AATCGATCATGTCTTTTCTTATGCTA 57.107 30.769 0.00 0.00 0.00 3.49
6550 7866 8.893219 ATCGATCATGTCTTTTCTTATGCTAA 57.107 30.769 0.00 0.00 0.00 3.09
6551 7867 8.716646 TCGATCATGTCTTTTCTTATGCTAAA 57.283 30.769 0.00 0.00 0.00 1.85
6552 7868 8.604035 TCGATCATGTCTTTTCTTATGCTAAAC 58.396 33.333 0.00 0.00 0.00 2.01
6553 7869 7.852945 CGATCATGTCTTTTCTTATGCTAAACC 59.147 37.037 0.00 0.00 0.00 3.27
6554 7870 8.814038 ATCATGTCTTTTCTTATGCTAAACCT 57.186 30.769 0.00 0.00 0.00 3.50
6555 7871 9.905713 ATCATGTCTTTTCTTATGCTAAACCTA 57.094 29.630 0.00 0.00 0.00 3.08
6556 7872 9.733556 TCATGTCTTTTCTTATGCTAAACCTAA 57.266 29.630 0.00 0.00 0.00 2.69
6558 7874 8.040716 TGTCTTTTCTTATGCTAAACCTAAGC 57.959 34.615 0.00 0.00 40.50 3.09
6570 7886 7.777095 TGCTAAACCTAAGCAAAAGAAAAAGA 58.223 30.769 0.00 0.00 46.57 2.52
6571 7887 7.920682 TGCTAAACCTAAGCAAAAGAAAAAGAG 59.079 33.333 0.00 0.00 46.57 2.85
6572 7888 7.382488 GCTAAACCTAAGCAAAAGAAAAAGAGG 59.618 37.037 0.00 0.00 39.83 3.69
6573 7889 6.791867 AACCTAAGCAAAAGAAAAAGAGGT 57.208 33.333 0.00 0.00 36.34 3.85
6574 7890 6.392625 ACCTAAGCAAAAGAAAAAGAGGTC 57.607 37.500 0.00 0.00 28.54 3.85
6575 7891 5.302059 ACCTAAGCAAAAGAAAAAGAGGTCC 59.698 40.000 0.00 0.00 28.54 4.46
6576 7892 5.301805 CCTAAGCAAAAGAAAAAGAGGTCCA 59.698 40.000 0.00 0.00 0.00 4.02
6577 7893 5.675684 AAGCAAAAGAAAAAGAGGTCCAA 57.324 34.783 0.00 0.00 0.00 3.53
6580 7896 5.068329 AGCAAAAGAAAAAGAGGTCCAAGAG 59.932 40.000 0.00 0.00 0.00 2.85
6581 7897 5.067805 GCAAAAGAAAAAGAGGTCCAAGAGA 59.932 40.000 0.00 0.00 0.00 3.10
6582 7898 6.499172 CAAAAGAAAAAGAGGTCCAAGAGAC 58.501 40.000 0.00 0.00 45.51 3.36
6590 7906 2.654802 GTCCAAGAGACAGACCCGA 58.345 57.895 0.00 0.00 45.55 5.14
6591 7907 0.966920 GTCCAAGAGACAGACCCGAA 59.033 55.000 0.00 0.00 45.55 4.30
6592 7908 1.550976 GTCCAAGAGACAGACCCGAAT 59.449 52.381 0.00 0.00 45.55 3.34
6593 7909 2.758979 GTCCAAGAGACAGACCCGAATA 59.241 50.000 0.00 0.00 45.55 1.75
6594 7910 3.194968 GTCCAAGAGACAGACCCGAATAA 59.805 47.826 0.00 0.00 45.55 1.40
6595 7911 3.835978 TCCAAGAGACAGACCCGAATAAA 59.164 43.478 0.00 0.00 0.00 1.40
6596 7912 4.081642 TCCAAGAGACAGACCCGAATAAAG 60.082 45.833 0.00 0.00 0.00 1.85
6597 7913 4.081642 CCAAGAGACAGACCCGAATAAAGA 60.082 45.833 0.00 0.00 0.00 2.52
6598 7914 5.479306 CAAGAGACAGACCCGAATAAAGAA 58.521 41.667 0.00 0.00 0.00 2.52
6599 7915 5.331876 AGAGACAGACCCGAATAAAGAAG 57.668 43.478 0.00 0.00 0.00 2.85
6600 7916 5.017490 AGAGACAGACCCGAATAAAGAAGA 58.983 41.667 0.00 0.00 0.00 2.87
6601 7917 5.480772 AGAGACAGACCCGAATAAAGAAGAA 59.519 40.000 0.00 0.00 0.00 2.52
6602 7918 6.014499 AGAGACAGACCCGAATAAAGAAGAAA 60.014 38.462 0.00 0.00 0.00 2.52
6603 7919 6.712276 AGACAGACCCGAATAAAGAAGAAAT 58.288 36.000 0.00 0.00 0.00 2.17
6604 7920 7.848128 AGACAGACCCGAATAAAGAAGAAATA 58.152 34.615 0.00 0.00 0.00 1.40
6605 7921 7.982354 AGACAGACCCGAATAAAGAAGAAATAG 59.018 37.037 0.00 0.00 0.00 1.73
6606 7922 7.621796 ACAGACCCGAATAAAGAAGAAATAGT 58.378 34.615 0.00 0.00 0.00 2.12
6607 7923 8.755977 ACAGACCCGAATAAAGAAGAAATAGTA 58.244 33.333 0.00 0.00 0.00 1.82
6608 7924 9.595823 CAGACCCGAATAAAGAAGAAATAGTAA 57.404 33.333 0.00 0.00 0.00 2.24
6639 7955 4.553547 CGAATTAGGATTAAGCAGTGCAGC 60.554 45.833 19.20 0.00 0.00 5.25
6731 8047 8.369588 CGGTGTACAAAATGCAACATTTATAAC 58.630 33.333 0.00 5.63 27.86 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 5.220662 GGATGTATGATTCAGAAACCACACG 60.221 44.000 0.00 0.00 0.00 4.49
101 110 7.910441 AAAAAGGCATTCTGTTGAATAATGG 57.090 32.000 0.00 0.00 40.61 3.16
156 165 4.637483 TGCCAAAAGATACTAAGCATGC 57.363 40.909 10.51 10.51 0.00 4.06
157 166 7.879070 ACATATGCCAAAAGATACTAAGCATG 58.121 34.615 1.58 0.00 39.62 4.06
318 341 2.095668 CGTACCCGAGATAGCATCTGAC 60.096 54.545 3.76 0.00 40.38 3.51
332 355 2.033065 CGAGATTACTCAGTCGTACCCG 60.033 54.545 0.00 0.00 42.72 5.28
348 371 3.305720 TGGGTTGAAGTATAGCCGAGAT 58.694 45.455 0.00 0.00 34.67 2.75
432 455 7.931275 ACCTTTCTGTTAGTCAAGATCAAAAC 58.069 34.615 0.00 0.00 0.00 2.43
725 749 3.998099 TCATGTGAAAACAATCCGCAA 57.002 38.095 0.00 0.00 0.00 4.85
753 777 5.365619 ACCGATTTGGCCATAACTAGTAAG 58.634 41.667 6.09 0.00 43.94 2.34
754 778 5.104859 TGACCGATTTGGCCATAACTAGTAA 60.105 40.000 6.09 0.00 43.94 2.24
755 779 4.406326 TGACCGATTTGGCCATAACTAGTA 59.594 41.667 6.09 0.00 43.94 1.82
757 781 3.804036 TGACCGATTTGGCCATAACTAG 58.196 45.455 6.09 0.00 43.94 2.57
759 783 2.799126 TGACCGATTTGGCCATAACT 57.201 45.000 6.09 0.00 43.94 2.24
760 784 4.385358 AATTGACCGATTTGGCCATAAC 57.615 40.909 6.09 0.00 43.94 1.89
761 785 4.221703 ACAAATTGACCGATTTGGCCATAA 59.778 37.500 20.65 4.33 46.36 1.90
821 849 2.501223 TTCCGTGTCAGCGATGTCCC 62.501 60.000 0.00 0.00 0.00 4.46
822 850 1.080093 TTCCGTGTCAGCGATGTCC 60.080 57.895 0.00 0.00 0.00 4.02
915 949 4.436451 CCGCGTTAACCAGTAATTCTTTCC 60.436 45.833 4.92 0.00 0.00 3.13
1018 1055 1.338655 GGAGTCCGAGTATTGAGGAGC 59.661 57.143 0.00 0.00 34.29 4.70
1092 1133 4.523282 ATCTGGCCTCCCTCCCCC 62.523 72.222 3.32 0.00 0.00 5.40
1093 1134 2.368878 AATCTGGCCTCCCTCCCC 60.369 66.667 3.32 0.00 0.00 4.81
1381 1818 3.978723 CTCAGCGACGTCCTGCCAG 62.979 68.421 22.02 14.65 0.00 4.85
1498 1936 1.200020 GAATCCAACCAACAAGCGGAG 59.800 52.381 0.00 0.00 0.00 4.63
1504 1942 1.133761 TGACCCGAATCCAACCAACAA 60.134 47.619 0.00 0.00 0.00 2.83
1506 1944 1.472480 CATGACCCGAATCCAACCAAC 59.528 52.381 0.00 0.00 0.00 3.77
1559 2064 1.202475 ACACAAATGCCAAACCCGAAC 60.202 47.619 0.00 0.00 0.00 3.95
1570 2075 4.802039 CCAATATGAGCTCAACACAAATGC 59.198 41.667 22.50 0.00 0.00 3.56
1572 2077 4.142093 GGCCAATATGAGCTCAACACAAAT 60.142 41.667 22.50 4.57 0.00 2.32
1589 2094 1.604604 CAATCGGAATACGGGCCAAT 58.395 50.000 4.39 0.00 44.45 3.16
1615 2128 6.249260 CGAATTCAATTCATGACGGAAGAAAC 59.751 38.462 10.76 0.00 37.92 2.78
1676 2189 0.657840 AGTGCAAACAAGACGCTCAC 59.342 50.000 0.00 0.00 0.00 3.51
1678 2191 1.330521 TCAAGTGCAAACAAGACGCTC 59.669 47.619 0.00 0.00 0.00 5.03
1682 2195 3.427161 AAGCTCAAGTGCAAACAAGAC 57.573 42.857 0.00 0.00 34.99 3.01
1739 2252 1.479757 GCTCCCAACCAAGTACCCAAA 60.480 52.381 0.00 0.00 0.00 3.28
1872 2386 2.417515 GCAGGAACTAGAACCTCCGAAG 60.418 54.545 0.00 0.00 36.02 3.79
1874 2388 1.183549 GCAGGAACTAGAACCTCCGA 58.816 55.000 0.00 0.00 36.02 4.55
1875 2389 1.187087 AGCAGGAACTAGAACCTCCG 58.813 55.000 0.00 0.00 36.02 4.63
1885 2408 5.105756 GCATAAACATAACCAAGCAGGAACT 60.106 40.000 1.83 0.00 41.22 3.01
1918 2441 2.480037 TGAAAAGCAGCATACAGTCACG 59.520 45.455 0.00 0.00 0.00 4.35
1990 2513 4.853924 AGTGGCTGTAAATCAACCAAAG 57.146 40.909 0.00 0.00 42.90 2.77
2088 2611 1.079127 CGAACCCGAGTGAATGGCT 60.079 57.895 0.00 0.00 38.22 4.75
2099 2622 4.630069 AGACAATCTATTGAAACGAACCCG 59.370 41.667 9.60 0.00 40.14 5.28
2110 2633 8.965172 GCAATGAATAAGCAAGACAATCTATTG 58.035 33.333 1.13 1.13 43.26 1.90
2125 2648 4.731961 CGCTACAGCTTTGCAATGAATAAG 59.268 41.667 15.97 2.89 39.32 1.73
2126 2649 4.394610 TCGCTACAGCTTTGCAATGAATAA 59.605 37.500 15.97 0.00 39.32 1.40
2141 2664 5.107104 TGTTTGAAACTAAGCATCGCTACAG 60.107 40.000 9.69 0.00 38.25 2.74
2147 2673 6.546395 AGCTAATGTTTGAAACTAAGCATCG 58.454 36.000 22.17 3.19 35.22 3.84
2149 2675 7.452880 TGAGCTAATGTTTGAAACTAAGCAT 57.547 32.000 22.17 12.83 35.22 3.79
2152 2678 9.683069 AATGTTGAGCTAATGTTTGAAACTAAG 57.317 29.630 9.69 5.28 0.00 2.18
2196 2722 1.202348 GCTGGTGAAATTACCTGGTGC 59.798 52.381 10.23 0.00 41.43 5.01
2205 2731 4.151883 ACCATACAGTTGCTGGTGAAATT 58.848 39.130 6.26 0.00 41.65 1.82
2216 2747 7.990886 ACCCACTAATTACATACCATACAGTTG 59.009 37.037 0.00 0.00 0.00 3.16
2244 2776 2.744202 GCAGAGCAATATATGGGGAACG 59.256 50.000 0.00 0.00 0.00 3.95
2267 2799 6.949352 ATTCAGAAACATGACAAAGACAGT 57.051 33.333 0.00 0.00 0.00 3.55
2382 2914 3.059884 CGGAATCATCCATTGTACCTCG 58.940 50.000 0.00 0.00 46.97 4.63
2412 2944 1.130938 TGATGCGCATGTGTAAAGCAG 59.869 47.619 30.76 0.00 41.34 4.24
2426 2958 4.611310 ACATCAATTTCTGACTGATGCG 57.389 40.909 17.22 3.16 46.82 4.73
2444 2976 4.689071 TGACACGTCTGTTCTACAAACAT 58.311 39.130 0.00 0.00 0.00 2.71
2448 2980 4.689071 ACAATGACACGTCTGTTCTACAA 58.311 39.130 0.00 0.00 0.00 2.41
2785 3319 3.308473 GGTTAATCTCCCAGTCAGCCTTT 60.308 47.826 0.00 0.00 0.00 3.11
3102 3637 1.741770 CCACCTTGCTCACTACGGC 60.742 63.158 0.00 0.00 0.00 5.68
3215 3752 3.064207 TCTGTCAGCATGTAAAACGACC 58.936 45.455 0.00 0.00 37.40 4.79
3347 3885 4.732784 AGCAAAGCACACGTTTATTATGG 58.267 39.130 0.00 0.00 0.00 2.74
3484 4022 9.798994 CTTTACTTACATAACCAGTCTATCGTT 57.201 33.333 0.00 0.00 0.00 3.85
3520 4058 3.695830 TGTGGGAGTCTTGGTGATTAC 57.304 47.619 0.00 0.00 0.00 1.89
3549 4087 2.191128 ACTAGAAAGCTGGCAACTGG 57.809 50.000 0.00 0.00 35.79 4.00
3664 4202 9.121517 GAAATATTCCATGAGATAAAACATGCG 57.878 33.333 0.00 0.00 41.43 4.73
3751 4289 5.448654 ACAATATTTGGATGCCTCAGCTTA 58.551 37.500 0.00 0.00 35.73 3.09
4068 4610 9.273016 CATCCGTATGTAGTCCTTATTGAAATT 57.727 33.333 0.00 0.00 0.00 1.82
4173 4840 9.708092 GTATACACTTCCTCCATTCCTAAATAC 57.292 37.037 0.00 0.00 0.00 1.89
4226 4893 6.820656 AGGATACAGTTAATCTTGCAGAAGTG 59.179 38.462 0.00 0.00 41.41 3.16
4360 5028 2.697751 AGAGGCGCATAAGAGAATCAGT 59.302 45.455 10.83 0.00 37.82 3.41
4412 5080 7.715657 TGTTGACAGCAAAATTAAGAGTCAAT 58.284 30.769 0.00 0.00 43.60 2.57
4542 5317 7.225538 GGATACTGTGTGTGATAATTCAAGGAG 59.774 40.741 0.00 0.00 32.48 3.69
4627 5402 9.163899 CCAGATCAAGTGATTATTCATATGGAG 57.836 37.037 2.13 0.00 34.37 3.86
4752 5527 3.278574 TGGCTTTAAGTCCCGATGAATG 58.721 45.455 0.00 0.00 0.00 2.67
4820 5596 7.016268 GGGATTGACATAATAGGTTAGACCAGA 59.984 40.741 0.00 0.00 41.95 3.86
4970 5746 9.762381 AATCAAATAACTTATGGGGACTTACAA 57.238 29.630 0.00 0.00 0.00 2.41
5009 5785 8.548880 AGCCAACTAGTGAGGATAAGTATAAA 57.451 34.615 16.64 0.00 0.00 1.40
5174 5950 5.409520 GGCATGATCATACAATATGACACGT 59.590 40.000 8.15 0.00 0.00 4.49
5222 5998 4.471904 TCCAGCATCTACAATCGAAAGT 57.528 40.909 0.00 0.00 0.00 2.66
5391 6592 4.142600 GGAGACTTACATGAACATGGCAAC 60.143 45.833 17.25 6.49 42.91 4.17
5413 6614 4.340950 AGGAAAACCATGTTACAACACTGG 59.659 41.667 15.83 15.83 42.51 4.00
5830 7032 6.858792 AATGGTAAAGGGTGGGTTATCTAT 57.141 37.500 0.00 0.00 0.00 1.98
5831 7033 6.661740 AAATGGTAAAGGGTGGGTTATCTA 57.338 37.500 0.00 0.00 0.00 1.98
5832 7034 5.546035 AAATGGTAAAGGGTGGGTTATCT 57.454 39.130 0.00 0.00 0.00 1.98
5833 7035 7.064229 TGATAAATGGTAAAGGGTGGGTTATC 58.936 38.462 0.00 0.00 0.00 1.75
5834 7036 6.987557 TGATAAATGGTAAAGGGTGGGTTAT 58.012 36.000 0.00 0.00 0.00 1.89
5835 7037 6.217900 TCTGATAAATGGTAAAGGGTGGGTTA 59.782 38.462 0.00 0.00 0.00 2.85
5836 7038 5.015817 TCTGATAAATGGTAAAGGGTGGGTT 59.984 40.000 0.00 0.00 0.00 4.11
6111 7327 9.057089 AGAGGAAACTACTCAAATAAAACTGTG 57.943 33.333 0.00 0.00 44.43 3.66
6112 7328 9.057089 CAGAGGAAACTACTCAAATAAAACTGT 57.943 33.333 0.00 0.00 44.43 3.55
6150 7459 8.824159 TTTCTTTTCTGTTGAAAATCACACAA 57.176 26.923 4.71 0.00 46.90 3.33
6178 7487 8.079809 AGGTAAAATCCAGAAAACAACGTAATG 58.920 33.333 0.00 0.00 0.00 1.90
6179 7488 8.173542 AGGTAAAATCCAGAAAACAACGTAAT 57.826 30.769 0.00 0.00 0.00 1.89
6181 7490 6.766944 TGAGGTAAAATCCAGAAAACAACGTA 59.233 34.615 0.00 0.00 0.00 3.57
6182 7491 5.591067 TGAGGTAAAATCCAGAAAACAACGT 59.409 36.000 0.00 0.00 0.00 3.99
6183 7492 6.017440 TCTGAGGTAAAATCCAGAAAACAACG 60.017 38.462 0.00 0.00 33.26 4.10
6207 7516 2.210116 TGACGCTCAGGAACAACTTTC 58.790 47.619 0.00 0.00 0.00 2.62
6309 7619 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
6402 7713 9.461312 TTGAGCCATATCTTTACAAAGTAATGT 57.539 29.630 1.86 0.00 37.31 2.71
6403 7714 9.941664 CTTGAGCCATATCTTTACAAAGTAATG 57.058 33.333 1.86 6.77 37.31 1.90
6404 7715 9.125026 CCTTGAGCCATATCTTTACAAAGTAAT 57.875 33.333 1.86 0.00 37.31 1.89
6406 7717 7.630082 ACCTTGAGCCATATCTTTACAAAGTA 58.370 34.615 1.86 0.00 37.31 2.24
6407 7718 6.485171 ACCTTGAGCCATATCTTTACAAAGT 58.515 36.000 1.86 0.00 37.31 2.66
6527 7843 7.852945 GGTTTAGCATAAGAAAAGACATGATCG 59.147 37.037 0.00 0.00 0.00 3.69
6545 7861 7.777095 TCTTTTTCTTTTGCTTAGGTTTAGCA 58.223 30.769 0.00 0.00 46.26 3.49
6546 7862 7.382488 CCTCTTTTTCTTTTGCTTAGGTTTAGC 59.618 37.037 0.00 0.00 39.10 3.09
6547 7863 8.414003 ACCTCTTTTTCTTTTGCTTAGGTTTAG 58.586 33.333 0.00 0.00 30.79 1.85
6549 7865 7.182817 ACCTCTTTTTCTTTTGCTTAGGTTT 57.817 32.000 0.00 0.00 30.79 3.27
6550 7866 6.183360 GGACCTCTTTTTCTTTTGCTTAGGTT 60.183 38.462 0.00 0.00 35.04 3.50
6551 7867 5.302059 GGACCTCTTTTTCTTTTGCTTAGGT 59.698 40.000 0.00 0.00 37.52 3.08
6552 7868 5.301805 TGGACCTCTTTTTCTTTTGCTTAGG 59.698 40.000 0.00 0.00 0.00 2.69
6553 7869 6.391227 TGGACCTCTTTTTCTTTTGCTTAG 57.609 37.500 0.00 0.00 0.00 2.18
6554 7870 6.605594 TCTTGGACCTCTTTTTCTTTTGCTTA 59.394 34.615 0.00 0.00 0.00 3.09
6555 7871 5.422012 TCTTGGACCTCTTTTTCTTTTGCTT 59.578 36.000 0.00 0.00 0.00 3.91
6556 7872 4.956075 TCTTGGACCTCTTTTTCTTTTGCT 59.044 37.500 0.00 0.00 0.00 3.91
6558 7874 6.095440 TGTCTCTTGGACCTCTTTTTCTTTTG 59.905 38.462 0.00 0.00 43.89 2.44
6559 7875 6.187682 TGTCTCTTGGACCTCTTTTTCTTTT 58.812 36.000 0.00 0.00 43.89 2.27
6564 7880 4.445019 GGTCTGTCTCTTGGACCTCTTTTT 60.445 45.833 0.00 0.00 44.21 1.94
6566 7882 2.635427 GGTCTGTCTCTTGGACCTCTTT 59.365 50.000 0.00 0.00 44.21 2.52
6568 7884 1.551329 GGGTCTGTCTCTTGGACCTCT 60.551 57.143 10.53 0.00 46.11 3.69
6569 7885 0.899019 GGGTCTGTCTCTTGGACCTC 59.101 60.000 10.53 0.00 46.11 3.85
6570 7886 0.900647 CGGGTCTGTCTCTTGGACCT 60.901 60.000 10.53 0.00 46.11 3.85
6571 7887 0.898789 TCGGGTCTGTCTCTTGGACC 60.899 60.000 0.00 0.00 46.14 4.46
6572 7888 0.966920 TTCGGGTCTGTCTCTTGGAC 59.033 55.000 0.00 0.00 44.70 4.02
6573 7889 1.938585 ATTCGGGTCTGTCTCTTGGA 58.061 50.000 0.00 0.00 0.00 3.53
6574 7890 3.887621 TTATTCGGGTCTGTCTCTTGG 57.112 47.619 0.00 0.00 0.00 3.61
6575 7891 5.073311 TCTTTATTCGGGTCTGTCTCTTG 57.927 43.478 0.00 0.00 0.00 3.02
6576 7892 5.480772 TCTTCTTTATTCGGGTCTGTCTCTT 59.519 40.000 0.00 0.00 0.00 2.85
6577 7893 5.017490 TCTTCTTTATTCGGGTCTGTCTCT 58.983 41.667 0.00 0.00 0.00 3.10
6580 7896 6.986904 ATTTCTTCTTTATTCGGGTCTGTC 57.013 37.500 0.00 0.00 0.00 3.51
6581 7897 7.621796 ACTATTTCTTCTTTATTCGGGTCTGT 58.378 34.615 0.00 0.00 0.00 3.41
6582 7898 9.595823 TTACTATTTCTTCTTTATTCGGGTCTG 57.404 33.333 0.00 0.00 0.00 3.51
6605 7921 9.865484 GCTTAATCCTAATTCGTCAAAGATTAC 57.135 33.333 0.00 0.00 0.00 1.89
6606 7922 9.607988 TGCTTAATCCTAATTCGTCAAAGATTA 57.392 29.630 0.00 0.00 0.00 1.75
6607 7923 8.506168 TGCTTAATCCTAATTCGTCAAAGATT 57.494 30.769 0.00 0.00 0.00 2.40
6608 7924 7.770897 ACTGCTTAATCCTAATTCGTCAAAGAT 59.229 33.333 0.00 0.00 0.00 2.40
6609 7925 7.064609 CACTGCTTAATCCTAATTCGTCAAAGA 59.935 37.037 0.00 0.00 0.00 2.52
6610 7926 7.182761 CACTGCTTAATCCTAATTCGTCAAAG 58.817 38.462 0.00 0.00 0.00 2.77
6611 7927 6.403200 GCACTGCTTAATCCTAATTCGTCAAA 60.403 38.462 0.00 0.00 0.00 2.69
6612 7928 5.064707 GCACTGCTTAATCCTAATTCGTCAA 59.935 40.000 0.00 0.00 0.00 3.18
6613 7929 4.570772 GCACTGCTTAATCCTAATTCGTCA 59.429 41.667 0.00 0.00 0.00 4.35
6614 7930 4.570772 TGCACTGCTTAATCCTAATTCGTC 59.429 41.667 1.98 0.00 0.00 4.20
6615 7931 4.513442 TGCACTGCTTAATCCTAATTCGT 58.487 39.130 1.98 0.00 0.00 3.85
6616 7932 4.553547 GCTGCACTGCTTAATCCTAATTCG 60.554 45.833 1.98 0.00 0.00 3.34
6617 7933 4.336433 TGCTGCACTGCTTAATCCTAATTC 59.664 41.667 0.00 0.00 0.00 2.17
6618 7934 4.096984 GTGCTGCACTGCTTAATCCTAATT 59.903 41.667 24.68 0.00 0.00 1.40
6619 7935 3.629398 GTGCTGCACTGCTTAATCCTAAT 59.371 43.478 24.68 0.00 0.00 1.73
6620 7936 3.009723 GTGCTGCACTGCTTAATCCTAA 58.990 45.455 24.68 0.00 0.00 2.69
6621 7937 2.632377 GTGCTGCACTGCTTAATCCTA 58.368 47.619 24.68 0.00 0.00 2.94
6622 7938 1.457346 GTGCTGCACTGCTTAATCCT 58.543 50.000 24.68 0.00 0.00 3.24
6623 7939 0.453390 GGTGCTGCACTGCTTAATCC 59.547 55.000 29.54 8.47 34.40 3.01
6624 7940 1.167851 TGGTGCTGCACTGCTTAATC 58.832 50.000 29.54 12.72 34.40 1.75
6625 7941 1.270550 GTTGGTGCTGCACTGCTTAAT 59.729 47.619 29.54 0.00 34.40 1.40
6639 7955 6.018832 GGAATTTGAATGTGTTCTTGTTGGTG 60.019 38.462 0.00 0.00 35.33 4.17
6706 8022 9.197694 TGTTATAAATGTTGCATTTTGTACACC 57.802 29.630 11.59 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.