Multiple sequence alignment - TraesCS2A01G155200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G155200 chr2A 100.000 3225 0 0 1 3225 102339216 102342440 0.000000e+00 5956.0
1 TraesCS2A01G155200 chr2A 91.667 228 19 0 2409 2636 59047189 59046962 1.870000e-82 316.0
2 TraesCS2A01G155200 chr2B 92.663 845 32 12 1484 2311 154831502 154832333 0.000000e+00 1190.0
3 TraesCS2A01G155200 chr2B 93.491 507 33 0 2719 3225 70744128 70744634 0.000000e+00 754.0
4 TraesCS2A01G155200 chr2B 88.933 506 56 0 2719 3224 239417105 239417610 2.730000e-175 625.0
5 TraesCS2A01G155200 chr2B 83.667 649 47 23 497 1133 154830489 154831090 1.010000e-154 556.0
6 TraesCS2A01G155200 chr2B 93.732 351 22 0 2719 3069 733979921 733980271 7.920000e-146 527.0
7 TraesCS2A01G155200 chr2B 90.698 301 14 7 1130 1416 154831192 154831492 3.900000e-104 388.0
8 TraesCS2A01G155200 chr2B 94.634 205 9 2 290 493 154830252 154830455 1.870000e-82 316.0
9 TraesCS2A01G155200 chr2B 87.218 266 25 8 38 299 154829871 154830131 8.750000e-76 294.0
10 TraesCS2A01G155200 chr2B 89.109 101 7 4 2307 2404 154832373 154832472 4.370000e-24 122.0
11 TraesCS2A01G155200 chr2B 88.889 90 9 1 2632 2721 237747206 237747294 3.400000e-20 110.0
12 TraesCS2A01G155200 chr2D 91.290 884 54 13 1449 2311 106123463 106124344 0.000000e+00 1184.0
13 TraesCS2A01G155200 chr2D 91.656 755 50 7 670 1416 106122465 106123214 0.000000e+00 1033.0
14 TraesCS2A01G155200 chr2D 83.673 490 44 21 38 503 106121828 106122305 2.300000e-116 429.0
15 TraesCS2A01G155200 chr2D 95.000 100 1 4 2307 2404 106124384 106124481 1.550000e-33 154.0
16 TraesCS2A01G155200 chr5D 92.549 510 38 0 2716 3225 538531248 538531757 0.000000e+00 732.0
17 TraesCS2A01G155200 chr5D 93.333 90 6 0 2632 2721 66752015 66751926 2.020000e-27 134.0
18 TraesCS2A01G155200 chr5D 90.741 54 1 3 2673 2724 547506126 547506177 5.770000e-08 69.4
19 TraesCS2A01G155200 chr5A 91.732 508 41 1 2719 3225 680487118 680486611 0.000000e+00 704.0
20 TraesCS2A01G155200 chr4B 91.124 507 42 3 2719 3224 491790550 491790046 0.000000e+00 684.0
21 TraesCS2A01G155200 chr1B 89.398 415 43 1 2812 3225 62020638 62020224 3.690000e-144 521.0
22 TraesCS2A01G155200 chr4A 94.242 330 19 0 2718 3047 610824993 610824664 3.710000e-139 505.0
23 TraesCS2A01G155200 chr4A 89.674 184 19 0 3042 3225 610822924 610822741 5.380000e-58 235.0
24 TraesCS2A01G155200 chr7A 90.940 298 27 0 2928 3225 563326222 563325925 5.010000e-108 401.0
25 TraesCS2A01G155200 chr6D 94.348 230 11 1 2408 2637 55113212 55112985 5.120000e-93 351.0
26 TraesCS2A01G155200 chr6D 90.741 54 5 0 2668 2721 25814807 25814754 4.460000e-09 73.1
27 TraesCS2A01G155200 chr5B 92.116 241 11 4 2403 2637 699437457 699437219 1.850000e-87 333.0
28 TraesCS2A01G155200 chr5B 90.566 53 5 0 2669 2721 182511121 182511069 1.610000e-08 71.3
29 TraesCS2A01G155200 chrUn 92.609 230 17 0 2408 2637 24959596 24959825 6.670000e-87 331.0
30 TraesCS2A01G155200 chr1D 92.576 229 14 2 2410 2637 229395038 229394812 3.100000e-85 326.0
31 TraesCS2A01G155200 chr6B 91.739 230 19 0 2408 2637 420781080 420781309 1.440000e-83 320.0
32 TraesCS2A01G155200 chr4D 91.703 229 14 3 2410 2637 100880368 100880144 2.420000e-81 313.0
33 TraesCS2A01G155200 chr4D 91.855 221 12 2 2410 2626 3730332 3730550 1.450000e-78 303.0
34 TraesCS2A01G155200 chr3D 94.416 197 9 2 2442 2637 539889232 539889427 5.230000e-78 302.0
35 TraesCS2A01G155200 chr6A 86.147 231 28 4 2408 2637 605678611 605678838 2.480000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G155200 chr2A 102339216 102342440 3224 False 5956.000000 5956 100.000000 1 3225 1 chr2A.!!$F1 3224
1 TraesCS2A01G155200 chr2B 70744128 70744634 506 False 754.000000 754 93.491000 2719 3225 1 chr2B.!!$F1 506
2 TraesCS2A01G155200 chr2B 239417105 239417610 505 False 625.000000 625 88.933000 2719 3224 1 chr2B.!!$F3 505
3 TraesCS2A01G155200 chr2B 154829871 154832472 2601 False 477.666667 1190 89.664833 38 2404 6 chr2B.!!$F5 2366
4 TraesCS2A01G155200 chr2D 106121828 106124481 2653 False 700.000000 1184 90.404750 38 2404 4 chr2D.!!$F1 2366
5 TraesCS2A01G155200 chr5D 538531248 538531757 509 False 732.000000 732 92.549000 2716 3225 1 chr5D.!!$F1 509
6 TraesCS2A01G155200 chr5A 680486611 680487118 507 True 704.000000 704 91.732000 2719 3225 1 chr5A.!!$R1 506
7 TraesCS2A01G155200 chr4B 491790046 491790550 504 True 684.000000 684 91.124000 2719 3224 1 chr4B.!!$R1 505
8 TraesCS2A01G155200 chr4A 610822741 610824993 2252 True 370.000000 505 91.958000 2718 3225 2 chr4A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.035458 CCGTCAGTGCCTTCCTTTCT 59.965 55.0 0.0 0.0 0.0 2.52 F
214 215 0.035739 GGTTCCGGTCCACAGCTAAA 59.964 55.0 0.0 0.0 0.0 1.85 F
1050 1226 0.582005 GCGTTCTTCTGCTCGTGTTT 59.418 50.0 0.0 0.0 0.0 2.83 F
1849 2372 1.164041 CCCACCCACACGTTGTTCTC 61.164 60.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 1585 0.732571 ACGAAAATGCAGTATGGCCG 59.267 50.0 0.0 0.0 35.86 6.13 R
1921 2450 1.025812 AGATACTCGCTCACCTTCCG 58.974 55.0 0.0 0.0 0.00 4.30 R
2216 2752 0.030101 GGAGGCGTCGATCAGAAGAG 59.970 60.0 0.0 0.0 0.00 2.85 R
3197 5527 0.667792 GCCTCAATATCGACGCCTCC 60.668 60.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.800554 CCGTCAGTGCCTTCCTTT 57.199 55.556 0.00 0.00 0.00 3.11
18 19 2.544726 CCGTCAGTGCCTTCCTTTC 58.455 57.895 0.00 0.00 0.00 2.62
19 20 0.035458 CCGTCAGTGCCTTCCTTTCT 59.965 55.000 0.00 0.00 0.00 2.52
20 21 1.433534 CGTCAGTGCCTTCCTTTCTC 58.566 55.000 0.00 0.00 0.00 2.87
21 22 1.814793 GTCAGTGCCTTCCTTTCTCC 58.185 55.000 0.00 0.00 0.00 3.71
22 23 0.321671 TCAGTGCCTTCCTTTCTCCG 59.678 55.000 0.00 0.00 0.00 4.63
23 24 0.321671 CAGTGCCTTCCTTTCTCCGA 59.678 55.000 0.00 0.00 0.00 4.55
24 25 1.065854 CAGTGCCTTCCTTTCTCCGAT 60.066 52.381 0.00 0.00 0.00 4.18
25 26 1.630878 AGTGCCTTCCTTTCTCCGATT 59.369 47.619 0.00 0.00 0.00 3.34
26 27 1.740025 GTGCCTTCCTTTCTCCGATTG 59.260 52.381 0.00 0.00 0.00 2.67
27 28 1.340017 TGCCTTCCTTTCTCCGATTGG 60.340 52.381 0.00 0.00 0.00 3.16
28 29 1.065418 GCCTTCCTTTCTCCGATTGGA 60.065 52.381 0.51 0.51 43.88 3.53
29 30 2.618045 GCCTTCCTTTCTCCGATTGGAA 60.618 50.000 2.51 0.00 45.87 3.53
30 31 3.891049 CCTTCCTTTCTCCGATTGGAAT 58.109 45.455 2.51 0.00 45.87 3.01
31 32 3.879892 CCTTCCTTTCTCCGATTGGAATC 59.120 47.826 2.51 0.00 45.87 2.52
32 33 3.560636 TCCTTTCTCCGATTGGAATCC 57.439 47.619 2.51 0.00 45.87 3.01
33 34 2.172717 TCCTTTCTCCGATTGGAATCCC 59.827 50.000 2.51 0.00 45.87 3.85
34 35 2.173569 CCTTTCTCCGATTGGAATCCCT 59.826 50.000 2.51 0.00 45.87 4.20
35 36 3.471680 CTTTCTCCGATTGGAATCCCTC 58.528 50.000 2.51 0.00 45.87 4.30
36 37 2.174685 TCTCCGATTGGAATCCCTCA 57.825 50.000 2.51 0.00 45.87 3.86
41 42 2.408050 CGATTGGAATCCCTCATCGAC 58.592 52.381 16.19 0.00 43.26 4.20
46 47 2.695666 TGGAATCCCTCATCGACTTCTC 59.304 50.000 0.00 0.00 0.00 2.87
49 50 1.066587 CCCTCATCGACTTCTCGGC 59.933 63.158 0.00 0.00 40.58 5.54
67 68 3.930504 CCCCCTCTGCTGATTTGC 58.069 61.111 0.00 0.00 0.00 3.68
69 70 0.324091 CCCCCTCTGCTGATTTGCTT 60.324 55.000 0.00 0.00 0.00 3.91
80 81 1.617850 TGATTTGCTTTGATGGCCGTT 59.382 42.857 0.00 0.00 0.00 4.44
139 140 4.541779 GACGACATGATCCAGCTTAGTAG 58.458 47.826 0.00 0.00 0.00 2.57
140 141 3.954904 ACGACATGATCCAGCTTAGTAGT 59.045 43.478 0.00 0.00 0.00 2.73
141 142 5.131067 ACGACATGATCCAGCTTAGTAGTA 58.869 41.667 0.00 0.00 0.00 1.82
144 145 6.804295 CGACATGATCCAGCTTAGTAGTATTC 59.196 42.308 0.00 0.00 0.00 1.75
185 186 5.062183 GCACTTGTTGGTTTTTCTCTGTTTC 59.938 40.000 0.00 0.00 0.00 2.78
186 187 5.576774 CACTTGTTGGTTTTTCTCTGTTTCC 59.423 40.000 0.00 0.00 0.00 3.13
189 190 2.673258 TGGTTTTTCTCTGTTTCCCCC 58.327 47.619 0.00 0.00 0.00 5.40
203 204 2.933834 CCCCCTTCAGGTTCCGGT 60.934 66.667 0.00 0.00 0.00 5.28
214 215 0.035739 GGTTCCGGTCCACAGCTAAA 59.964 55.000 0.00 0.00 0.00 1.85
222 223 3.058501 CGGTCCACAGCTAAACGAATTTT 60.059 43.478 0.00 0.00 0.00 1.82
227 228 6.795593 GTCCACAGCTAAACGAATTTTAACTC 59.204 38.462 0.00 0.00 0.00 3.01
228 229 6.072893 TCCACAGCTAAACGAATTTTAACTCC 60.073 38.462 0.00 0.00 0.00 3.85
230 231 7.015877 CACAGCTAAACGAATTTTAACTCCTC 58.984 38.462 0.00 0.00 0.00 3.71
231 232 6.708949 ACAGCTAAACGAATTTTAACTCCTCA 59.291 34.615 0.00 0.00 0.00 3.86
259 263 4.590918 TGCCACCGTTTGATTCCTTAATA 58.409 39.130 0.00 0.00 0.00 0.98
306 440 8.840321 CCGATCATCTTTTTCATTATGTAAGGT 58.160 33.333 0.00 0.00 0.00 3.50
317 451 9.770097 TTTCATTATGTAAGGTTTTGAATTGCA 57.230 25.926 0.00 0.00 0.00 4.08
322 456 5.049167 TGTAAGGTTTTGAATTGCAGCAAG 58.951 37.500 14.47 0.00 0.00 4.01
364 498 0.748005 CCAAGGATAGCGGTTGGTGG 60.748 60.000 0.00 0.00 36.70 4.61
461 595 6.201425 TCCAAGTCGTCACACATAAAGTTAAC 59.799 38.462 0.00 0.00 0.00 2.01
495 629 7.965107 GCTGGATATTCAATGAATAATTCGACC 59.035 37.037 18.25 14.13 37.92 4.79
515 679 6.475207 CGACCACTTCGTCCTAAAAATAATG 58.525 40.000 0.00 0.00 43.24 1.90
535 702 4.837896 TGATTCGAGTATCCTGTAGCTG 57.162 45.455 0.00 0.00 0.00 4.24
562 729 1.284785 TCAGGTTCACCAATCATCCCC 59.715 52.381 0.00 0.00 38.89 4.81
575 742 3.030873 TCATCCCCAGCCCTATTTTTG 57.969 47.619 0.00 0.00 0.00 2.44
602 770 3.740832 CGATCGATTACCATTTAGCAGCA 59.259 43.478 10.26 0.00 0.00 4.41
603 771 4.211164 CGATCGATTACCATTTAGCAGCAA 59.789 41.667 10.26 0.00 0.00 3.91
620 788 2.921754 AGCAAACGTATCTCGCAGTTAC 59.078 45.455 0.00 0.00 44.19 2.50
621 789 2.921754 GCAAACGTATCTCGCAGTTACT 59.078 45.455 0.00 0.00 44.19 2.24
622 790 4.100529 GCAAACGTATCTCGCAGTTACTA 58.899 43.478 0.00 0.00 44.19 1.82
623 791 4.027864 GCAAACGTATCTCGCAGTTACTAC 60.028 45.833 0.00 0.00 44.19 2.73
629 797 2.635714 TCTCGCAGTTACTACATCGGA 58.364 47.619 0.00 0.00 0.00 4.55
646 814 3.399330 TCGGAAGTTTTCACTCCATGTC 58.601 45.455 0.00 0.00 30.45 3.06
657 825 8.299570 GTTTTCACTCCATGTCTTCAAACATAT 58.700 33.333 0.00 0.00 37.78 1.78
661 829 9.764363 TCACTCCATGTCTTCAAACATATATAC 57.236 33.333 0.00 0.00 37.78 1.47
662 830 9.770097 CACTCCATGTCTTCAAACATATATACT 57.230 33.333 0.00 0.00 37.78 2.12
663 831 9.988815 ACTCCATGTCTTCAAACATATATACTC 57.011 33.333 0.00 0.00 37.78 2.59
664 832 9.429359 CTCCATGTCTTCAAACATATATACTCC 57.571 37.037 0.00 0.00 37.78 3.85
665 833 8.933653 TCCATGTCTTCAAACATATATACTCCA 58.066 33.333 0.00 0.00 37.78 3.86
666 834 9.212641 CCATGTCTTCAAACATATATACTCCAG 57.787 37.037 0.00 0.00 37.78 3.86
667 835 9.770097 CATGTCTTCAAACATATATACTCCAGT 57.230 33.333 0.00 0.00 37.78 4.00
705 873 1.659098 CGTGCCGACAATACCTTTCTC 59.341 52.381 0.00 0.00 0.00 2.87
827 1000 2.266055 CCCTTCTCCTCCACACGC 59.734 66.667 0.00 0.00 0.00 5.34
831 1004 1.228894 TTCTCCTCCACACGCCTCT 60.229 57.895 0.00 0.00 0.00 3.69
882 1055 4.156556 AGAATACGCAGTTCGGTAGTACAA 59.843 41.667 2.06 0.00 37.78 2.41
902 1075 6.564709 ACAATACTGAACTACTGACACGTA 57.435 37.500 0.00 0.00 0.00 3.57
906 1079 5.298197 ACTGAACTACTGACACGTATCTG 57.702 43.478 0.00 0.00 0.00 2.90
912 1085 6.997239 ACTACTGACACGTATCTGACATAA 57.003 37.500 7.78 0.00 0.00 1.90
937 1110 7.568199 TGATACGTACATCTCTGAATTCTGA 57.432 36.000 13.64 13.64 0.00 3.27
975 1148 2.558795 AGGATCATACAAGTCGATCGGG 59.441 50.000 16.41 5.41 37.10 5.14
981 1154 4.554363 AAGTCGATCGGGCGCTCG 62.554 66.667 26.97 26.97 35.41 5.03
1023 1199 1.298014 GACCAGAAGACTGCAGGGG 59.702 63.158 19.93 11.39 42.25 4.79
1050 1226 0.582005 GCGTTCTTCTGCTCGTGTTT 59.418 50.000 0.00 0.00 0.00 2.83
1054 1230 3.123804 GTTCTTCTGCTCGTGTTTCTCA 58.876 45.455 0.00 0.00 0.00 3.27
1056 1232 3.995199 TCTTCTGCTCGTGTTTCTCATT 58.005 40.909 0.00 0.00 0.00 2.57
1057 1233 3.990469 TCTTCTGCTCGTGTTTCTCATTC 59.010 43.478 0.00 0.00 0.00 2.67
1182 1467 1.337703 GCCTTGAAATGCATCGCCATA 59.662 47.619 0.00 0.00 0.00 2.74
1183 1468 2.606308 GCCTTGAAATGCATCGCCATAG 60.606 50.000 0.00 0.00 0.00 2.23
1251 1539 2.918131 GCGAACAAACACATTCTGGCTC 60.918 50.000 0.00 0.00 0.00 4.70
1278 1566 1.656652 CTCCGCGATCATTTTCAGGT 58.343 50.000 8.23 0.00 0.00 4.00
1297 1585 2.361119 GGTCTTGACCCCTTGTGAAAAC 59.639 50.000 8.54 0.00 0.00 2.43
1321 1609 3.374058 GCCATACTGCATTTTCGTGTAGT 59.626 43.478 3.34 3.34 45.18 2.73
1322 1610 4.569162 GCCATACTGCATTTTCGTGTAGTA 59.431 41.667 7.18 7.18 46.40 1.82
1372 1663 9.683069 ACTGTAAAGCTGAAAAATATCTTTGTG 57.317 29.630 0.00 0.00 0.00 3.33
1374 1665 7.598493 TGTAAAGCTGAAAAATATCTTTGTGCC 59.402 33.333 0.00 0.00 0.00 5.01
1376 1667 7.466746 AAGCTGAAAAATATCTTTGTGCCTA 57.533 32.000 0.00 0.00 0.00 3.93
1380 1679 6.616947 TGAAAAATATCTTTGTGCCTAACCG 58.383 36.000 0.00 0.00 0.00 4.44
1402 1701 4.963953 CGGTGAACGAAATATTTCAGCATC 59.036 41.667 24.23 17.43 46.10 3.91
1419 1718 3.596310 CATCCATGCACCAATTTGACA 57.404 42.857 0.00 0.00 0.00 3.58
1420 1719 3.255725 CATCCATGCACCAATTTGACAC 58.744 45.455 0.00 0.00 0.00 3.67
1422 1721 2.898612 TCCATGCACCAATTTGACACAT 59.101 40.909 0.00 0.00 0.00 3.21
1432 1734 7.546667 GCACCAATTTGACACATAATCAGATTT 59.453 33.333 0.00 0.00 30.66 2.17
1453 1755 4.695217 TTTTCAGCCGGCTAATAAACTG 57.305 40.909 32.30 15.70 0.00 3.16
1454 1756 3.620427 TTCAGCCGGCTAATAAACTGA 57.380 42.857 32.30 18.07 32.62 3.41
1456 1758 3.945346 TCAGCCGGCTAATAAACTGAAA 58.055 40.909 32.30 0.00 31.60 2.69
1458 1760 3.689649 CAGCCGGCTAATAAACTGAAACT 59.310 43.478 32.30 0.00 0.00 2.66
1460 1762 5.353123 CAGCCGGCTAATAAACTGAAACTTA 59.647 40.000 32.30 0.00 0.00 2.24
1464 1980 7.586747 CCGGCTAATAAACTGAAACTTAAACA 58.413 34.615 0.00 0.00 0.00 2.83
1491 2007 5.963176 TCATATGTTTGTCACTGCATTGT 57.037 34.783 3.77 0.00 0.00 2.71
1528 2044 3.397482 TCTCTGAAGAACAAGAAGCTGC 58.603 45.455 0.00 0.00 0.00 5.25
1529 2045 3.070734 TCTCTGAAGAACAAGAAGCTGCT 59.929 43.478 0.00 0.00 0.00 4.24
1533 2049 2.181954 AGAACAAGAAGCTGCTGAGG 57.818 50.000 1.35 0.00 0.00 3.86
1534 2050 1.696336 AGAACAAGAAGCTGCTGAGGA 59.304 47.619 1.35 0.00 0.00 3.71
1729 2245 2.421424 CCTACGCCTACAACGACTACTT 59.579 50.000 0.00 0.00 0.00 2.24
1844 2367 2.281484 CCTCCCACCCACACGTTG 60.281 66.667 0.00 0.00 0.00 4.10
1849 2372 1.164041 CCCACCCACACGTTGTTCTC 61.164 60.000 0.00 0.00 0.00 2.87
1875 2398 4.533124 TCCCGGCGGGCTCTGATA 62.533 66.667 39.66 18.73 43.94 2.15
1919 2448 4.680237 CGGGGCAGTGCGTCTTCA 62.680 66.667 9.45 0.00 0.00 3.02
1921 2450 3.050275 GGGCAGTGCGTCTTCACC 61.050 66.667 9.45 0.00 37.68 4.02
2216 2752 4.087892 TCCTGCTGCCGCTCTTCC 62.088 66.667 0.70 0.00 36.97 3.46
2229 2765 2.540769 CGCTCTTCCTCTTCTGATCGAC 60.541 54.545 0.00 0.00 0.00 4.20
2311 2850 7.514127 AGGGAATATTACTATCAGGTCACATGT 59.486 37.037 0.00 0.00 0.00 3.21
2408 2993 9.990868 ACTATATGTAAAGGATGTTTTTCCCTT 57.009 29.630 0.00 0.00 41.70 3.95
2410 2995 6.605471 ATGTAAAGGATGTTTTTCCCTTCC 57.395 37.500 0.00 0.00 39.21 3.46
2411 2996 5.711698 TGTAAAGGATGTTTTTCCCTTCCT 58.288 37.500 0.00 0.00 39.21 3.36
2412 2997 5.538433 TGTAAAGGATGTTTTTCCCTTCCTG 59.462 40.000 0.00 0.00 39.21 3.86
2413 2998 4.469469 AAGGATGTTTTTCCCTTCCTGA 57.531 40.909 0.00 0.00 35.52 3.86
2414 2999 4.469469 AGGATGTTTTTCCCTTCCTGAA 57.531 40.909 0.00 0.00 35.72 3.02
2415 3000 4.814967 AGGATGTTTTTCCCTTCCTGAAA 58.185 39.130 0.00 0.00 35.72 2.69
2416 3001 5.406163 AGGATGTTTTTCCCTTCCTGAAAT 58.594 37.500 0.00 0.00 35.72 2.17
2417 3002 5.481824 AGGATGTTTTTCCCTTCCTGAAATC 59.518 40.000 0.00 0.00 35.72 2.17
2418 3003 5.481824 GGATGTTTTTCCCTTCCTGAAATCT 59.518 40.000 0.00 0.00 32.19 2.40
2419 3004 6.663523 GGATGTTTTTCCCTTCCTGAAATCTA 59.336 38.462 0.00 0.00 32.19 1.98
2420 3005 7.178451 GGATGTTTTTCCCTTCCTGAAATCTAA 59.822 37.037 0.00 0.00 32.19 2.10
2421 3006 7.906199 TGTTTTTCCCTTCCTGAAATCTAAA 57.094 32.000 0.00 0.00 32.19 1.85
2422 3007 8.312669 TGTTTTTCCCTTCCTGAAATCTAAAA 57.687 30.769 0.00 0.00 32.19 1.52
2423 3008 8.763601 TGTTTTTCCCTTCCTGAAATCTAAAAA 58.236 29.630 0.00 0.00 32.19 1.94
2424 3009 9.261180 GTTTTTCCCTTCCTGAAATCTAAAAAG 57.739 33.333 0.00 0.00 32.19 2.27
2425 3010 8.547481 TTTTCCCTTCCTGAAATCTAAAAAGT 57.453 30.769 0.00 0.00 32.19 2.66
2426 3011 7.524717 TTCCCTTCCTGAAATCTAAAAAGTG 57.475 36.000 0.00 0.00 0.00 3.16
2427 3012 5.476945 TCCCTTCCTGAAATCTAAAAAGTGC 59.523 40.000 0.00 0.00 0.00 4.40
2428 3013 5.393962 CCTTCCTGAAATCTAAAAAGTGCG 58.606 41.667 0.00 0.00 0.00 5.34
2429 3014 5.048713 CCTTCCTGAAATCTAAAAAGTGCGT 60.049 40.000 0.00 0.00 0.00 5.24
2430 3015 5.356882 TCCTGAAATCTAAAAAGTGCGTG 57.643 39.130 0.00 0.00 0.00 5.34
2431 3016 3.914364 CCTGAAATCTAAAAAGTGCGTGC 59.086 43.478 0.00 0.00 0.00 5.34
2432 3017 3.550561 TGAAATCTAAAAAGTGCGTGCG 58.449 40.909 0.00 0.00 0.00 5.34
2433 3018 1.963747 AATCTAAAAAGTGCGTGCGC 58.036 45.000 9.85 9.85 42.35 6.09
2434 3019 0.179225 ATCTAAAAAGTGCGTGCGCG 60.179 50.000 16.86 16.86 45.51 6.86
2451 3036 4.415332 GCGCGTTGGAGAGGACGA 62.415 66.667 8.43 0.00 41.53 4.20
2452 3037 2.202492 CGCGTTGGAGAGGACGAG 60.202 66.667 0.00 0.00 41.53 4.18
2453 3038 2.507324 GCGTTGGAGAGGACGAGC 60.507 66.667 0.00 0.00 41.53 5.03
2454 3039 2.202492 CGTTGGAGAGGACGAGCG 60.202 66.667 0.00 0.00 41.53 5.03
2455 3040 2.182030 GTTGGAGAGGACGAGCGG 59.818 66.667 0.00 0.00 0.00 5.52
2456 3041 3.760035 TTGGAGAGGACGAGCGGC 61.760 66.667 0.00 0.00 0.00 6.53
2473 3058 4.498520 CCGCTCGGTCACTCGCAT 62.499 66.667 0.00 0.00 0.00 4.73
2474 3059 3.250323 CGCTCGGTCACTCGCATG 61.250 66.667 0.00 0.00 0.00 4.06
2475 3060 3.558411 GCTCGGTCACTCGCATGC 61.558 66.667 7.91 7.91 0.00 4.06
2476 3061 2.125952 CTCGGTCACTCGCATGCA 60.126 61.111 19.57 4.02 0.00 3.96
2477 3062 1.520120 CTCGGTCACTCGCATGCAT 60.520 57.895 19.57 0.00 0.00 3.96
2478 3063 1.759293 CTCGGTCACTCGCATGCATG 61.759 60.000 22.70 22.70 0.00 4.06
2497 3082 2.178474 GCATACATGCGTTTGTCTGG 57.822 50.000 0.00 0.00 44.67 3.86
2498 3083 1.468520 GCATACATGCGTTTGTCTGGT 59.531 47.619 0.00 0.00 44.67 4.00
2499 3084 2.675844 GCATACATGCGTTTGTCTGGTA 59.324 45.455 0.00 0.00 44.67 3.25
2500 3085 3.242413 GCATACATGCGTTTGTCTGGTAG 60.242 47.826 0.00 0.00 44.67 3.18
2501 3086 2.543777 ACATGCGTTTGTCTGGTAGT 57.456 45.000 0.00 0.00 0.00 2.73
2502 3087 2.143122 ACATGCGTTTGTCTGGTAGTG 58.857 47.619 0.00 0.00 0.00 2.74
2503 3088 1.135972 CATGCGTTTGTCTGGTAGTGC 60.136 52.381 0.00 0.00 0.00 4.40
2504 3089 0.179070 TGCGTTTGTCTGGTAGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
2505 3090 1.156736 GCGTTTGTCTGGTAGTGCAT 58.843 50.000 0.00 0.00 0.00 3.96
2506 3091 1.135972 GCGTTTGTCTGGTAGTGCATG 60.136 52.381 0.00 0.00 0.00 4.06
2507 3092 2.143122 CGTTTGTCTGGTAGTGCATGT 58.857 47.619 0.00 0.00 0.00 3.21
2508 3093 2.096268 CGTTTGTCTGGTAGTGCATGTG 60.096 50.000 0.00 0.00 0.00 3.21
2509 3094 3.138304 GTTTGTCTGGTAGTGCATGTGA 58.862 45.455 0.00 0.00 0.00 3.58
2510 3095 3.701205 TTGTCTGGTAGTGCATGTGAT 57.299 42.857 0.00 0.00 0.00 3.06
2511 3096 3.701205 TGTCTGGTAGTGCATGTGATT 57.299 42.857 0.00 0.00 0.00 2.57
2512 3097 4.817318 TGTCTGGTAGTGCATGTGATTA 57.183 40.909 0.00 0.00 0.00 1.75
2513 3098 4.503910 TGTCTGGTAGTGCATGTGATTAC 58.496 43.478 0.00 0.00 0.00 1.89
2514 3099 4.222810 TGTCTGGTAGTGCATGTGATTACT 59.777 41.667 0.00 0.00 0.00 2.24
2515 3100 4.568359 GTCTGGTAGTGCATGTGATTACTG 59.432 45.833 0.00 0.00 0.00 2.74
2516 3101 3.872696 TGGTAGTGCATGTGATTACTGG 58.127 45.455 0.00 0.00 0.00 4.00
2517 3102 2.614057 GGTAGTGCATGTGATTACTGGC 59.386 50.000 0.00 0.00 0.00 4.85
2518 3103 2.495155 AGTGCATGTGATTACTGGCA 57.505 45.000 0.00 3.36 35.34 4.92
2519 3104 3.008835 AGTGCATGTGATTACTGGCAT 57.991 42.857 9.29 0.00 38.28 4.40
2520 3105 3.359033 AGTGCATGTGATTACTGGCATT 58.641 40.909 9.29 3.92 38.28 3.56
2521 3106 4.525996 AGTGCATGTGATTACTGGCATTA 58.474 39.130 9.29 0.00 38.28 1.90
2522 3107 4.949238 AGTGCATGTGATTACTGGCATTAA 59.051 37.500 9.29 0.00 38.28 1.40
2523 3108 5.418524 AGTGCATGTGATTACTGGCATTAAA 59.581 36.000 9.29 0.00 38.28 1.52
2524 3109 6.097270 AGTGCATGTGATTACTGGCATTAAAT 59.903 34.615 9.29 0.00 38.28 1.40
2525 3110 6.199531 GTGCATGTGATTACTGGCATTAAATG 59.800 38.462 9.29 2.75 38.28 2.32
2545 3130 7.859325 AAATGCGGTTAGACTTATAACATGT 57.141 32.000 0.00 0.00 37.38 3.21
2546 3131 6.844696 ATGCGGTTAGACTTATAACATGTG 57.155 37.500 0.00 0.00 37.38 3.21
2547 3132 5.968254 TGCGGTTAGACTTATAACATGTGA 58.032 37.500 0.00 0.00 37.38 3.58
2548 3133 6.399743 TGCGGTTAGACTTATAACATGTGAA 58.600 36.000 0.00 0.00 37.38 3.18
2549 3134 6.533723 TGCGGTTAGACTTATAACATGTGAAG 59.466 38.462 0.00 6.49 37.38 3.02
2550 3135 6.018994 GCGGTTAGACTTATAACATGTGAAGG 60.019 42.308 15.86 2.76 37.38 3.46
2551 3136 7.262772 CGGTTAGACTTATAACATGTGAAGGA 58.737 38.462 15.86 3.19 37.38 3.36
2552 3137 7.222224 CGGTTAGACTTATAACATGTGAAGGAC 59.778 40.741 15.86 10.94 37.38 3.85
2553 3138 8.038944 GGTTAGACTTATAACATGTGAAGGACA 58.961 37.037 15.86 0.00 37.38 4.02
2554 3139 9.431887 GTTAGACTTATAACATGTGAAGGACAA 57.568 33.333 15.86 6.89 38.36 3.18
2556 3141 8.918202 AGACTTATAACATGTGAAGGACAAAA 57.082 30.769 15.86 0.00 38.36 2.44
2557 3142 8.784043 AGACTTATAACATGTGAAGGACAAAAC 58.216 33.333 15.86 3.63 38.36 2.43
2558 3143 8.458573 ACTTATAACATGTGAAGGACAAAACA 57.541 30.769 15.86 0.00 38.36 2.83
2559 3144 8.567948 ACTTATAACATGTGAAGGACAAAACAG 58.432 33.333 15.86 0.00 38.36 3.16
2560 3145 8.684386 TTATAACATGTGAAGGACAAAACAGA 57.316 30.769 0.00 0.00 38.36 3.41
2561 3146 7.765695 ATAACATGTGAAGGACAAAACAGAT 57.234 32.000 0.00 0.00 38.36 2.90
2562 3147 5.695851 ACATGTGAAGGACAAAACAGATC 57.304 39.130 0.00 0.00 38.36 2.75
2563 3148 4.520492 ACATGTGAAGGACAAAACAGATCC 59.480 41.667 0.00 0.00 38.36 3.36
2564 3149 4.163441 TGTGAAGGACAAAACAGATCCA 57.837 40.909 0.00 0.00 34.73 3.41
2565 3150 4.728772 TGTGAAGGACAAAACAGATCCAT 58.271 39.130 0.00 0.00 34.73 3.41
2566 3151 4.520111 TGTGAAGGACAAAACAGATCCATG 59.480 41.667 0.00 0.00 34.73 3.66
2567 3152 4.520492 GTGAAGGACAAAACAGATCCATGT 59.480 41.667 0.00 0.00 34.73 3.21
2568 3153 4.520111 TGAAGGACAAAACAGATCCATGTG 59.480 41.667 0.00 0.00 34.73 3.21
2569 3154 4.104383 AGGACAAAACAGATCCATGTGT 57.896 40.909 0.00 0.00 35.62 3.72
2570 3155 5.241403 AGGACAAAACAGATCCATGTGTA 57.759 39.130 0.00 0.00 32.63 2.90
2571 3156 5.819991 AGGACAAAACAGATCCATGTGTAT 58.180 37.500 0.00 0.00 32.63 2.29
2572 3157 6.248433 AGGACAAAACAGATCCATGTGTATT 58.752 36.000 0.00 0.00 32.63 1.89
2573 3158 6.721208 AGGACAAAACAGATCCATGTGTATTT 59.279 34.615 0.00 0.00 32.63 1.40
2574 3159 6.808212 GGACAAAACAGATCCATGTGTATTTG 59.192 38.462 15.20 15.20 37.65 2.32
2575 3160 7.288810 ACAAAACAGATCCATGTGTATTTGT 57.711 32.000 15.96 15.96 38.61 2.83
2576 3161 7.725251 ACAAAACAGATCCATGTGTATTTGTT 58.275 30.769 15.96 10.01 39.32 2.83
2577 3162 8.203485 ACAAAACAGATCCATGTGTATTTGTTT 58.797 29.630 15.96 12.16 40.25 2.83
2578 3163 8.702438 CAAAACAGATCCATGTGTATTTGTTTC 58.298 33.333 15.65 0.00 38.64 2.78
2579 3164 6.182039 ACAGATCCATGTGTATTTGTTTCG 57.818 37.500 0.00 0.00 31.96 3.46
2580 3165 5.123820 ACAGATCCATGTGTATTTGTTTCGG 59.876 40.000 0.00 0.00 31.96 4.30
2581 3166 4.640201 AGATCCATGTGTATTTGTTTCGGG 59.360 41.667 0.00 0.00 0.00 5.14
2582 3167 3.757270 TCCATGTGTATTTGTTTCGGGT 58.243 40.909 0.00 0.00 0.00 5.28
2583 3168 4.145807 TCCATGTGTATTTGTTTCGGGTT 58.854 39.130 0.00 0.00 0.00 4.11
2584 3169 4.585162 TCCATGTGTATTTGTTTCGGGTTT 59.415 37.500 0.00 0.00 0.00 3.27
2585 3170 5.069251 TCCATGTGTATTTGTTTCGGGTTTT 59.931 36.000 0.00 0.00 0.00 2.43
2586 3171 5.404066 CCATGTGTATTTGTTTCGGGTTTTC 59.596 40.000 0.00 0.00 0.00 2.29
2587 3172 5.578005 TGTGTATTTGTTTCGGGTTTTCA 57.422 34.783 0.00 0.00 0.00 2.69
2588 3173 5.962433 TGTGTATTTGTTTCGGGTTTTCAA 58.038 33.333 0.00 0.00 0.00 2.69
2589 3174 6.395629 TGTGTATTTGTTTCGGGTTTTCAAA 58.604 32.000 0.00 0.00 33.61 2.69
2590 3175 7.042335 TGTGTATTTGTTTCGGGTTTTCAAAT 58.958 30.769 0.00 0.00 40.32 2.32
2591 3176 7.549488 TGTGTATTTGTTTCGGGTTTTCAAATT 59.451 29.630 0.00 0.00 38.83 1.82
2592 3177 8.391859 GTGTATTTGTTTCGGGTTTTCAAATTT 58.608 29.630 0.00 0.00 38.83 1.82
2593 3178 8.947115 TGTATTTGTTTCGGGTTTTCAAATTTT 58.053 25.926 0.00 0.00 38.83 1.82
2594 3179 9.776158 GTATTTGTTTCGGGTTTTCAAATTTTT 57.224 25.926 0.00 0.00 38.83 1.94
2601 3186 8.897457 TTCGGGTTTTCAAATTTTTAAAAAGC 57.103 26.923 17.72 16.52 38.00 3.51
2617 3202 9.553064 TTTTAAAAAGCCATATCTTTCAAAGCA 57.447 25.926 0.00 0.00 35.41 3.91
2618 3203 9.723601 TTTAAAAAGCCATATCTTTCAAAGCAT 57.276 25.926 0.00 0.00 35.41 3.79
2619 3204 7.605410 AAAAAGCCATATCTTTCAAAGCATG 57.395 32.000 0.00 0.00 35.41 4.06
2620 3205 5.927281 AAGCCATATCTTTCAAAGCATGT 57.073 34.783 9.46 0.00 0.00 3.21
2621 3206 5.258456 AGCCATATCTTTCAAAGCATGTG 57.742 39.130 9.46 5.57 0.00 3.21
2622 3207 4.708421 AGCCATATCTTTCAAAGCATGTGT 59.292 37.500 9.46 0.00 0.00 3.72
2623 3208 5.039333 GCCATATCTTTCAAAGCATGTGTC 58.961 41.667 9.46 0.00 0.00 3.67
2624 3209 5.268544 CCATATCTTTCAAAGCATGTGTCG 58.731 41.667 9.46 0.00 0.00 4.35
2625 3210 3.837213 ATCTTTCAAAGCATGTGTCGG 57.163 42.857 0.00 0.00 0.00 4.79
2626 3211 2.844946 TCTTTCAAAGCATGTGTCGGA 58.155 42.857 0.00 0.00 0.00 4.55
2627 3212 3.210227 TCTTTCAAAGCATGTGTCGGAA 58.790 40.909 0.00 0.00 0.00 4.30
2628 3213 3.820467 TCTTTCAAAGCATGTGTCGGAAT 59.180 39.130 0.00 0.00 0.00 3.01
2629 3214 4.278170 TCTTTCAAAGCATGTGTCGGAATT 59.722 37.500 0.00 0.00 0.00 2.17
2630 3215 3.829886 TCAAAGCATGTGTCGGAATTC 57.170 42.857 0.00 0.00 0.00 2.17
2631 3216 3.145286 TCAAAGCATGTGTCGGAATTCA 58.855 40.909 7.93 0.00 0.00 2.57
2632 3217 3.189080 TCAAAGCATGTGTCGGAATTCAG 59.811 43.478 7.93 3.12 0.00 3.02
2633 3218 2.768253 AGCATGTGTCGGAATTCAGA 57.232 45.000 7.93 5.92 0.00 3.27
2634 3219 3.272574 AGCATGTGTCGGAATTCAGAT 57.727 42.857 11.54 0.00 0.00 2.90
2635 3220 3.201290 AGCATGTGTCGGAATTCAGATC 58.799 45.455 11.54 8.69 0.00 2.75
2636 3221 2.289002 GCATGTGTCGGAATTCAGATCC 59.711 50.000 11.54 6.13 0.00 3.36
2637 3222 3.801698 CATGTGTCGGAATTCAGATCCT 58.198 45.455 11.54 0.00 34.66 3.24
2638 3223 3.251479 TGTGTCGGAATTCAGATCCTG 57.749 47.619 11.54 0.00 34.66 3.86
2639 3224 1.936547 GTGTCGGAATTCAGATCCTGC 59.063 52.381 11.54 0.00 34.66 4.85
2640 3225 1.554617 TGTCGGAATTCAGATCCTGCA 59.445 47.619 11.54 2.04 34.66 4.41
2641 3226 2.171237 TGTCGGAATTCAGATCCTGCAT 59.829 45.455 11.54 0.00 34.66 3.96
2642 3227 2.547211 GTCGGAATTCAGATCCTGCATG 59.453 50.000 11.54 0.00 34.66 4.06
2643 3228 1.878088 CGGAATTCAGATCCTGCATGG 59.122 52.381 7.93 0.00 34.66 3.66
2644 3229 2.236766 GGAATTCAGATCCTGCATGGG 58.763 52.381 7.93 0.00 36.20 4.00
2645 3230 2.158564 GGAATTCAGATCCTGCATGGGA 60.159 50.000 7.93 0.00 39.95 4.37
2646 3231 3.559069 GAATTCAGATCCTGCATGGGAA 58.441 45.455 0.00 0.00 39.02 3.97
2647 3232 3.897657 ATTCAGATCCTGCATGGGAAT 57.102 42.857 0.00 0.11 39.02 3.01
2648 3233 2.651382 TCAGATCCTGCATGGGAATG 57.349 50.000 0.00 2.12 39.02 2.67
2649 3234 1.848388 TCAGATCCTGCATGGGAATGT 59.152 47.619 0.00 0.00 39.02 2.71
2650 3235 2.242965 TCAGATCCTGCATGGGAATGTT 59.757 45.455 0.00 0.00 39.02 2.71
2651 3236 3.028850 CAGATCCTGCATGGGAATGTTT 58.971 45.455 0.00 0.00 39.02 2.83
2652 3237 3.067742 CAGATCCTGCATGGGAATGTTTC 59.932 47.826 0.00 0.00 39.02 2.78
2653 3238 1.462616 TCCTGCATGGGAATGTTTCG 58.537 50.000 0.00 0.00 36.20 3.46
2654 3239 1.004161 TCCTGCATGGGAATGTTTCGA 59.996 47.619 0.00 0.00 36.20 3.71
2655 3240 1.133025 CCTGCATGGGAATGTTTCGAC 59.867 52.381 0.00 0.00 0.00 4.20
2656 3241 0.801872 TGCATGGGAATGTTTCGACG 59.198 50.000 0.00 0.00 0.00 5.12
2657 3242 1.083489 GCATGGGAATGTTTCGACGA 58.917 50.000 0.00 0.00 0.00 4.20
2658 3243 1.466950 GCATGGGAATGTTTCGACGAA 59.533 47.619 6.10 6.10 0.00 3.85
2659 3244 2.097466 GCATGGGAATGTTTCGACGAAT 59.903 45.455 11.71 0.00 0.00 3.34
2660 3245 3.427503 GCATGGGAATGTTTCGACGAATT 60.428 43.478 11.71 2.66 0.00 2.17
2661 3246 4.732784 CATGGGAATGTTTCGACGAATTT 58.267 39.130 11.71 5.93 0.00 1.82
2662 3247 4.839668 TGGGAATGTTTCGACGAATTTT 57.160 36.364 11.71 5.58 0.00 1.82
2663 3248 5.189659 TGGGAATGTTTCGACGAATTTTT 57.810 34.783 11.71 5.23 0.00 1.94
2681 3266 3.701532 TTTTTCGATGCCAACTTTCGT 57.298 38.095 0.00 0.00 34.60 3.85
2682 3267 4.815040 TTTTTCGATGCCAACTTTCGTA 57.185 36.364 0.00 0.00 34.60 3.43
2683 3268 3.799137 TTTCGATGCCAACTTTCGTAC 57.201 42.857 0.00 0.00 34.60 3.67
2684 3269 2.736144 TCGATGCCAACTTTCGTACT 57.264 45.000 0.00 0.00 34.60 2.73
2685 3270 3.853831 TCGATGCCAACTTTCGTACTA 57.146 42.857 0.00 0.00 34.60 1.82
2686 3271 4.380841 TCGATGCCAACTTTCGTACTAT 57.619 40.909 0.00 0.00 34.60 2.12
2687 3272 5.503662 TCGATGCCAACTTTCGTACTATA 57.496 39.130 0.00 0.00 34.60 1.31
2688 3273 6.080648 TCGATGCCAACTTTCGTACTATAT 57.919 37.500 0.00 0.00 34.60 0.86
2689 3274 5.918576 TCGATGCCAACTTTCGTACTATATG 59.081 40.000 0.00 0.00 34.60 1.78
2690 3275 5.918576 CGATGCCAACTTTCGTACTATATGA 59.081 40.000 0.00 0.00 0.00 2.15
2691 3276 6.586463 CGATGCCAACTTTCGTACTATATGAT 59.414 38.462 0.00 0.00 0.00 2.45
2692 3277 7.410835 CGATGCCAACTTTCGTACTATATGATG 60.411 40.741 0.00 0.00 0.00 3.07
2693 3278 5.465390 TGCCAACTTTCGTACTATATGATGC 59.535 40.000 0.00 0.00 0.00 3.91
2694 3279 5.465390 GCCAACTTTCGTACTATATGATGCA 59.535 40.000 0.00 0.00 0.00 3.96
2695 3280 6.018262 GCCAACTTTCGTACTATATGATGCAA 60.018 38.462 0.00 0.00 0.00 4.08
2696 3281 7.345192 CCAACTTTCGTACTATATGATGCAAC 58.655 38.462 0.00 0.00 0.00 4.17
2697 3282 7.224753 CCAACTTTCGTACTATATGATGCAACT 59.775 37.037 0.00 0.00 0.00 3.16
2698 3283 8.604035 CAACTTTCGTACTATATGATGCAACTT 58.396 33.333 0.00 0.00 0.00 2.66
2699 3284 8.718102 ACTTTCGTACTATATGATGCAACTTT 57.282 30.769 0.00 0.00 0.00 2.66
2700 3285 9.811995 ACTTTCGTACTATATGATGCAACTTTA 57.188 29.630 0.00 0.00 0.00 1.85
2702 3287 9.811995 TTTCGTACTATATGATGCAACTTTAGT 57.188 29.630 0.00 0.05 0.00 2.24
2714 3299 7.967854 TGATGCAACTTTAGTATTGTATTGTGC 59.032 33.333 0.00 0.00 32.18 4.57
2715 3300 7.208225 TGCAACTTTAGTATTGTATTGTGCA 57.792 32.000 0.00 0.00 0.00 4.57
2716 3301 7.652727 TGCAACTTTAGTATTGTATTGTGCAA 58.347 30.769 0.00 0.00 0.00 4.08
2824 3409 1.078848 GAGCCTCGTTCTGCCACAT 60.079 57.895 0.00 0.00 0.00 3.21
2981 3566 0.245539 CTAAGGAGTTTCCGCCGTCA 59.754 55.000 0.00 0.00 42.75 4.35
3016 3601 1.073199 CCTCCATACAATCGGCCCC 59.927 63.158 0.00 0.00 0.00 5.80
3119 5449 2.028130 TGGACAAACGGAATGTTGCTT 58.972 42.857 0.00 0.00 40.84 3.91
3149 5479 0.250295 CAACGAAGGAGCCTGTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
3152 5482 0.539051 CGAAGGAGCCTGTGGAATCT 59.461 55.000 0.00 0.00 0.00 2.40
3166 5496 1.625818 GGAATCTCGTATGATGGCCCT 59.374 52.381 0.00 0.00 0.00 5.19
3197 5527 2.357009 GGTGCCACTATCAGCATCAAAG 59.643 50.000 0.00 0.00 41.86 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.035458 AGAAAGGAAGGCACTGACGG 59.965 55.000 0.00 0.00 40.86 4.79
1 2 1.433534 GAGAAAGGAAGGCACTGACG 58.566 55.000 0.00 0.00 40.86 4.35
2 3 1.814793 GGAGAAAGGAAGGCACTGAC 58.185 55.000 0.00 0.00 40.86 3.51
4 5 0.321671 TCGGAGAAAGGAAGGCACTG 59.678 55.000 0.00 0.00 40.86 3.66
5 6 1.280457 ATCGGAGAAAGGAAGGCACT 58.720 50.000 0.00 0.00 43.58 4.40
6 7 1.740025 CAATCGGAGAAAGGAAGGCAC 59.260 52.381 0.00 0.00 43.58 5.01
7 8 1.340017 CCAATCGGAGAAAGGAAGGCA 60.340 52.381 0.00 0.00 43.58 4.75
8 9 1.065418 TCCAATCGGAGAAAGGAAGGC 60.065 52.381 0.00 0.00 43.58 4.35
9 10 3.350219 TTCCAATCGGAGAAAGGAAGG 57.650 47.619 0.00 0.00 44.61 3.46
12 13 2.172717 GGGATTCCAATCGGAGAAAGGA 59.827 50.000 4.80 0.00 44.10 3.36
13 14 2.173569 AGGGATTCCAATCGGAGAAAGG 59.826 50.000 4.80 0.00 44.10 3.11
14 15 3.118261 TGAGGGATTCCAATCGGAGAAAG 60.118 47.826 4.80 0.00 44.10 2.62
15 16 2.843730 TGAGGGATTCCAATCGGAGAAA 59.156 45.455 4.80 0.00 44.10 2.52
16 17 2.477245 TGAGGGATTCCAATCGGAGAA 58.523 47.619 4.80 0.00 44.10 2.87
17 18 2.174685 TGAGGGATTCCAATCGGAGA 57.825 50.000 4.80 0.00 44.10 3.71
18 19 2.611473 CGATGAGGGATTCCAATCGGAG 60.611 54.545 16.72 4.85 44.10 4.63
19 20 1.344438 CGATGAGGGATTCCAATCGGA 59.656 52.381 16.72 0.00 42.83 4.55
20 21 1.344438 TCGATGAGGGATTCCAATCGG 59.656 52.381 21.67 8.79 44.75 4.18
21 22 2.036475 AGTCGATGAGGGATTCCAATCG 59.964 50.000 17.90 17.90 45.39 3.34
22 23 3.760580 AGTCGATGAGGGATTCCAATC 57.239 47.619 4.80 2.73 34.83 2.67
23 24 3.713764 AGAAGTCGATGAGGGATTCCAAT 59.286 43.478 4.80 0.00 34.83 3.16
24 25 3.107601 AGAAGTCGATGAGGGATTCCAA 58.892 45.455 4.80 0.00 34.83 3.53
25 26 2.695666 GAGAAGTCGATGAGGGATTCCA 59.304 50.000 4.80 0.00 34.83 3.53
26 27 3.378911 GAGAAGTCGATGAGGGATTCC 57.621 52.381 0.00 0.00 0.00 3.01
54 55 3.770666 CCATCAAAGCAAATCAGCAGAG 58.229 45.455 0.00 0.00 36.85 3.35
56 57 2.268298 GCCATCAAAGCAAATCAGCAG 58.732 47.619 0.00 0.00 36.85 4.24
60 61 1.255882 ACGGCCATCAAAGCAAATCA 58.744 45.000 2.24 0.00 0.00 2.57
80 81 0.178947 ACTTTTGGGGGAAATCGGCA 60.179 50.000 0.00 0.00 0.00 5.69
83 84 4.270008 ACTGATACTTTTGGGGGAAATCG 58.730 43.478 0.00 0.00 0.00 3.34
139 140 3.629398 CCATGAAGCCTGAACCTGAATAC 59.371 47.826 0.00 0.00 0.00 1.89
140 141 3.889815 CCATGAAGCCTGAACCTGAATA 58.110 45.455 0.00 0.00 0.00 1.75
141 142 2.731572 CCATGAAGCCTGAACCTGAAT 58.268 47.619 0.00 0.00 0.00 2.57
144 145 0.609957 TGCCATGAAGCCTGAACCTG 60.610 55.000 0.00 0.00 0.00 4.00
186 187 2.933834 ACCGGAACCTGAAGGGGG 60.934 66.667 9.46 0.00 40.27 5.40
189 190 1.003718 GTGGACCGGAACCTGAAGG 60.004 63.158 9.46 0.00 42.17 3.46
199 200 0.320073 TTCGTTTAGCTGTGGACCGG 60.320 55.000 0.00 0.00 0.00 5.28
201 202 4.499037 AAAATTCGTTTAGCTGTGGACC 57.501 40.909 0.00 0.00 0.00 4.46
203 204 6.072893 GGAGTTAAAATTCGTTTAGCTGTGGA 60.073 38.462 0.00 0.00 41.69 4.02
214 215 6.348540 GCAGACAATGAGGAGTTAAAATTCGT 60.349 38.462 0.00 0.00 0.00 3.85
222 223 2.027192 GGTGGCAGACAATGAGGAGTTA 60.027 50.000 0.00 0.00 0.00 2.24
227 228 0.606401 AACGGTGGCAGACAATGAGG 60.606 55.000 0.00 0.00 0.00 3.86
228 229 1.069022 CAAACGGTGGCAGACAATGAG 60.069 52.381 0.00 0.00 0.00 2.90
230 231 0.950836 TCAAACGGTGGCAGACAATG 59.049 50.000 0.00 0.00 0.00 2.82
231 232 1.909700 ATCAAACGGTGGCAGACAAT 58.090 45.000 0.00 0.00 0.00 2.71
259 263 7.038154 TCGGTTTCTTTCATTCATTCAAAGT 57.962 32.000 0.00 0.00 0.00 2.66
306 440 5.816258 TGATTGAACTTGCTGCAATTCAAAA 59.184 32.000 31.83 25.62 42.57 2.44
317 451 4.053295 GCACAAACATGATTGAACTTGCT 58.947 39.130 21.13 0.00 34.38 3.91
322 456 4.149396 GCAAGAGCACAAACATGATTGAAC 59.851 41.667 21.13 12.30 41.58 3.18
461 595 2.509052 TGAATATCCAGCCGAAGTCG 57.491 50.000 0.00 0.00 39.44 4.18
535 702 3.826157 TGATTGGTGAACCTGAAACATCC 59.174 43.478 0.37 0.00 36.82 3.51
575 742 1.779569 AATGGTAATCGATCGACGCC 58.220 50.000 22.06 21.26 42.26 5.68
578 745 4.143305 GCTGCTAAATGGTAATCGATCGAC 60.143 45.833 22.06 8.54 0.00 4.20
602 770 5.300969 TGTAGTAACTGCGAGATACGTTT 57.699 39.130 0.00 0.00 44.60 3.60
603 771 4.952262 TGTAGTAACTGCGAGATACGTT 57.048 40.909 0.00 0.00 44.60 3.99
620 788 4.566004 TGGAGTGAAAACTTCCGATGTAG 58.434 43.478 0.00 0.00 0.00 2.74
621 789 4.610605 TGGAGTGAAAACTTCCGATGTA 57.389 40.909 0.00 0.00 0.00 2.29
622 790 3.485463 TGGAGTGAAAACTTCCGATGT 57.515 42.857 0.00 0.00 0.00 3.06
623 791 3.753272 ACATGGAGTGAAAACTTCCGATG 59.247 43.478 0.00 0.00 0.00 3.84
629 797 6.152661 TGTTTGAAGACATGGAGTGAAAACTT 59.847 34.615 0.00 0.00 0.00 2.66
660 828 7.254658 CGAACTTAATTTGTGTTGTACTGGAGT 60.255 37.037 0.00 0.00 0.00 3.85
661 829 7.069569 CGAACTTAATTTGTGTTGTACTGGAG 58.930 38.462 0.00 0.00 0.00 3.86
662 830 6.539464 ACGAACTTAATTTGTGTTGTACTGGA 59.461 34.615 0.00 0.00 33.26 3.86
663 831 6.631238 CACGAACTTAATTTGTGTTGTACTGG 59.369 38.462 0.00 0.00 44.75 4.00
664 832 7.589205 CACGAACTTAATTTGTGTTGTACTG 57.411 36.000 0.00 0.00 44.75 2.74
705 873 2.772568 TGTCGGCACAATTGACAAAG 57.227 45.000 13.59 0.00 0.00 2.77
808 976 1.609501 CGTGTGGAGGAGAAGGGGA 60.610 63.158 0.00 0.00 0.00 4.81
809 977 2.982130 CGTGTGGAGGAGAAGGGG 59.018 66.667 0.00 0.00 0.00 4.79
827 1000 1.538950 GGCAGAAGTTTCAGCAAGAGG 59.461 52.381 10.71 0.00 40.93 3.69
831 1004 6.434028 ACATAATTAGGCAGAAGTTTCAGCAA 59.566 34.615 10.71 0.00 40.93 3.91
847 1020 7.408395 CGAACTGCGTATTCTCGACATAATTAG 60.408 40.741 0.00 0.00 34.64 1.73
882 1055 6.822170 TCAGATACGTGTCAGTAGTTCAGTAT 59.178 38.462 15.08 0.00 0.00 2.12
902 1075 9.237187 AGAGATGTACGTATCATTATGTCAGAT 57.763 33.333 12.06 0.00 0.00 2.90
906 1079 9.847706 ATTCAGAGATGTACGTATCATTATGTC 57.152 33.333 12.06 0.00 0.00 3.06
912 1085 8.079203 GTCAGAATTCAGAGATGTACGTATCAT 58.921 37.037 12.06 4.47 0.00 2.45
934 1107 0.319900 CCTCCACGAACACCTGTCAG 60.320 60.000 0.00 0.00 0.00 3.51
937 1110 1.472662 CCTCCTCCACGAACACCTGT 61.473 60.000 0.00 0.00 0.00 4.00
981 1154 2.664081 CCTCCCAGCAGTGTCCTCC 61.664 68.421 0.00 0.00 0.00 4.30
982 1155 0.980231 ATCCTCCCAGCAGTGTCCTC 60.980 60.000 0.00 0.00 0.00 3.71
983 1156 1.081833 ATCCTCCCAGCAGTGTCCT 59.918 57.895 0.00 0.00 0.00 3.85
989 1162 0.393537 GGTCAACATCCTCCCAGCAG 60.394 60.000 0.00 0.00 0.00 4.24
1023 1199 1.206072 CAGAAGAACGCTGCTGCAC 59.794 57.895 16.29 6.37 40.84 4.57
1050 1226 4.185413 GCGTTGGCGAGAATGAGA 57.815 55.556 0.00 0.00 41.33 3.27
1089 1268 0.934436 CCAACCGAAAGCAAACGCTG 60.934 55.000 0.00 0.00 40.49 5.18
1182 1467 5.192121 ACATCTACCCTACAGTCTACACTCT 59.808 44.000 0.00 0.00 0.00 3.24
1183 1468 5.438833 ACATCTACCCTACAGTCTACACTC 58.561 45.833 0.00 0.00 0.00 3.51
1278 1566 2.294074 CGTTTTCACAAGGGGTCAAGA 58.706 47.619 0.00 0.00 0.00 3.02
1297 1585 0.732571 ACGAAAATGCAGTATGGCCG 59.267 50.000 0.00 0.00 35.86 6.13
1321 1609 3.181505 CCGTGCAAAAATGCGGTTCTATA 60.182 43.478 3.17 0.00 39.41 1.31
1322 1610 2.415357 CCGTGCAAAAATGCGGTTCTAT 60.415 45.455 3.17 0.00 39.41 1.98
1372 1663 1.445871 ATTTCGTTCACCGGTTAGGC 58.554 50.000 2.97 0.00 46.52 3.93
1374 1665 6.411630 TGAAATATTTCGTTCACCGGTTAG 57.588 37.500 20.45 0.00 40.01 2.34
1376 1667 4.379082 GCTGAAATATTTCGTTCACCGGTT 60.379 41.667 20.45 0.00 40.01 4.44
1380 1679 5.163663 TGGATGCTGAAATATTTCGTTCACC 60.164 40.000 20.45 19.12 40.01 4.02
1402 1701 2.816204 TGTGTCAAATTGGTGCATGG 57.184 45.000 0.00 0.00 0.00 3.66
1432 1734 4.328536 TCAGTTTATTAGCCGGCTGAAAA 58.671 39.130 38.98 28.73 31.14 2.29
1434 1736 3.620427 TCAGTTTATTAGCCGGCTGAA 57.380 42.857 38.98 26.37 31.14 3.02
1435 1737 3.620427 TTCAGTTTATTAGCCGGCTGA 57.380 42.857 38.98 32.01 0.00 4.26
1436 1738 3.689649 AGTTTCAGTTTATTAGCCGGCTG 59.310 43.478 38.98 20.24 0.00 4.85
1437 1739 3.951663 AGTTTCAGTTTATTAGCCGGCT 58.048 40.909 34.85 34.85 0.00 5.52
1439 1741 7.586747 TGTTTAAGTTTCAGTTTATTAGCCGG 58.413 34.615 0.00 0.00 0.00 6.13
1440 1742 9.620660 ATTGTTTAAGTTTCAGTTTATTAGCCG 57.379 29.630 0.00 0.00 0.00 5.52
1460 1762 8.550376 GCAGTGACAAACATATGAAAATTGTTT 58.450 29.630 10.38 0.00 42.60 2.83
1464 1980 8.714179 CAATGCAGTGACAAACATATGAAAATT 58.286 29.630 8.85 0.00 0.00 1.82
1491 2007 1.074405 AGAGAAGGTGCCTGCAAATCA 59.926 47.619 0.00 0.00 0.00 2.57
1528 2044 2.784356 CGCCTCCTGCTCTCCTCAG 61.784 68.421 0.00 0.00 38.05 3.35
1529 2045 2.757508 CGCCTCCTGCTCTCCTCA 60.758 66.667 0.00 0.00 38.05 3.86
1533 2049 4.200283 CGACCGCCTCCTGCTCTC 62.200 72.222 0.00 0.00 38.05 3.20
1779 2295 2.257676 GTCGTCGGAGGTGGTGAC 59.742 66.667 0.00 0.00 0.00 3.67
1781 2297 4.065281 GGGTCGTCGGAGGTGGTG 62.065 72.222 0.00 0.00 0.00 4.17
1788 2304 2.345760 GCTTACTGGGGTCGTCGGA 61.346 63.158 0.00 0.00 0.00 4.55
1789 2305 2.183555 GCTTACTGGGGTCGTCGG 59.816 66.667 0.00 0.00 0.00 4.79
1790 2306 1.445582 GTGCTTACTGGGGTCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
1791 2307 1.079336 GGTGCTTACTGGGGTCGTC 60.079 63.158 0.00 0.00 0.00 4.20
1841 2359 2.548480 CGGGAACAAGAAGGAGAACAAC 59.452 50.000 0.00 0.00 0.00 3.32
1844 2367 1.809684 CCGGGAACAAGAAGGAGAAC 58.190 55.000 0.00 0.00 0.00 3.01
1849 2372 2.746277 CCGCCGGGAACAAGAAGG 60.746 66.667 2.18 0.00 34.06 3.46
1875 2398 1.129058 AAACGAGGAACCACAGGAGT 58.871 50.000 0.00 0.00 0.00 3.85
1921 2450 1.025812 AGATACTCGCTCACCTTCCG 58.974 55.000 0.00 0.00 0.00 4.30
1934 2463 3.183793 TGCATGCACATCGAAGATACT 57.816 42.857 18.46 0.00 45.12 2.12
2116 2651 2.360475 GTCAAGGAGCTGGTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
2216 2752 0.030101 GGAGGCGTCGATCAGAAGAG 59.970 60.000 0.00 0.00 0.00 2.85
2229 2765 2.537792 TTTACAGTCGAGCGGAGGCG 62.538 60.000 0.00 0.00 46.35 5.52
2287 2826 9.561069 AAACATGTGACCTGATAGTAATATTCC 57.439 33.333 0.00 0.00 0.00 3.01
2337 2919 1.985159 ACCTGACATGTACACCCACAT 59.015 47.619 0.00 0.00 39.76 3.21
2338 2920 1.346395 GACCTGACATGTACACCCACA 59.654 52.381 0.00 0.00 0.00 4.17
2339 2921 1.671850 CGACCTGACATGTACACCCAC 60.672 57.143 0.00 0.00 0.00 4.61
2404 2989 5.619981 CGCACTTTTTAGATTTCAGGAAGGG 60.620 44.000 0.00 0.00 0.00 3.95
2405 2990 5.048713 ACGCACTTTTTAGATTTCAGGAAGG 60.049 40.000 0.00 0.00 0.00 3.46
2406 2991 5.853282 CACGCACTTTTTAGATTTCAGGAAG 59.147 40.000 0.00 0.00 0.00 3.46
2407 2992 5.757886 CACGCACTTTTTAGATTTCAGGAA 58.242 37.500 0.00 0.00 0.00 3.36
2408 2993 4.320202 GCACGCACTTTTTAGATTTCAGGA 60.320 41.667 0.00 0.00 0.00 3.86
2409 2994 3.914364 GCACGCACTTTTTAGATTTCAGG 59.086 43.478 0.00 0.00 0.00 3.86
2410 2995 3.599514 CGCACGCACTTTTTAGATTTCAG 59.400 43.478 0.00 0.00 0.00 3.02
2411 2996 3.550561 CGCACGCACTTTTTAGATTTCA 58.449 40.909 0.00 0.00 0.00 2.69
2412 2997 2.338520 GCGCACGCACTTTTTAGATTTC 59.661 45.455 10.65 0.00 41.49 2.17
2413 2998 2.315901 GCGCACGCACTTTTTAGATTT 58.684 42.857 10.65 0.00 41.49 2.17
2414 2999 1.724654 CGCGCACGCACTTTTTAGATT 60.725 47.619 16.04 0.00 42.06 2.40
2415 3000 0.179225 CGCGCACGCACTTTTTAGAT 60.179 50.000 16.04 0.00 42.06 1.98
2416 3001 1.203065 CGCGCACGCACTTTTTAGA 59.797 52.632 16.04 0.00 42.06 2.10
2417 3002 3.723104 CGCGCACGCACTTTTTAG 58.277 55.556 16.04 0.00 42.06 1.85
2434 3019 4.415332 TCGTCCTCTCCAACGCGC 62.415 66.667 5.73 0.00 38.72 6.86
2435 3020 2.202492 CTCGTCCTCTCCAACGCG 60.202 66.667 3.53 3.53 38.72 6.01
2436 3021 2.507324 GCTCGTCCTCTCCAACGC 60.507 66.667 0.00 0.00 38.72 4.84
2437 3022 2.202492 CGCTCGTCCTCTCCAACG 60.202 66.667 0.00 0.00 40.17 4.10
2438 3023 2.182030 CCGCTCGTCCTCTCCAAC 59.818 66.667 0.00 0.00 0.00 3.77
2439 3024 3.760035 GCCGCTCGTCCTCTCCAA 61.760 66.667 0.00 0.00 0.00 3.53
2456 3041 4.498520 ATGCGAGTGACCGAGCGG 62.499 66.667 7.48 7.48 42.03 5.52
2457 3042 3.250323 CATGCGAGTGACCGAGCG 61.250 66.667 0.00 0.00 0.00 5.03
2458 3043 3.558411 GCATGCGAGTGACCGAGC 61.558 66.667 0.00 0.00 0.00 5.03
2459 3044 1.520120 ATGCATGCGAGTGACCGAG 60.520 57.895 14.09 0.00 0.00 4.63
2460 3045 1.810853 CATGCATGCGAGTGACCGA 60.811 57.895 14.93 0.00 0.00 4.69
2461 3046 2.705220 CATGCATGCGAGTGACCG 59.295 61.111 14.93 0.00 0.00 4.79
2462 3047 2.406401 GCATGCATGCGAGTGACC 59.594 61.111 33.99 8.38 44.67 4.02
2479 3064 3.932710 ACTACCAGACAAACGCATGTATG 59.067 43.478 8.39 8.39 41.12 2.39
2480 3065 3.932710 CACTACCAGACAAACGCATGTAT 59.067 43.478 0.00 0.00 32.57 2.29
2481 3066 3.322369 CACTACCAGACAAACGCATGTA 58.678 45.455 0.00 0.00 32.57 2.29
2482 3067 2.143122 CACTACCAGACAAACGCATGT 58.857 47.619 0.00 0.00 35.90 3.21
2483 3068 1.135972 GCACTACCAGACAAACGCATG 60.136 52.381 0.00 0.00 0.00 4.06
2484 3069 1.156736 GCACTACCAGACAAACGCAT 58.843 50.000 0.00 0.00 0.00 4.73
2485 3070 0.179070 TGCACTACCAGACAAACGCA 60.179 50.000 0.00 0.00 0.00 5.24
2486 3071 1.135972 CATGCACTACCAGACAAACGC 60.136 52.381 0.00 0.00 0.00 4.84
2487 3072 2.096268 CACATGCACTACCAGACAAACG 60.096 50.000 0.00 0.00 0.00 3.60
2488 3073 3.138304 TCACATGCACTACCAGACAAAC 58.862 45.455 0.00 0.00 0.00 2.93
2489 3074 3.483808 TCACATGCACTACCAGACAAA 57.516 42.857 0.00 0.00 0.00 2.83
2490 3075 3.701205 ATCACATGCACTACCAGACAA 57.299 42.857 0.00 0.00 0.00 3.18
2491 3076 3.701205 AATCACATGCACTACCAGACA 57.299 42.857 0.00 0.00 0.00 3.41
2492 3077 4.568359 CAGTAATCACATGCACTACCAGAC 59.432 45.833 0.00 0.00 0.00 3.51
2493 3078 4.383010 CCAGTAATCACATGCACTACCAGA 60.383 45.833 0.00 0.00 0.00 3.86
2494 3079 3.873361 CCAGTAATCACATGCACTACCAG 59.127 47.826 0.00 0.00 0.00 4.00
2495 3080 3.872696 CCAGTAATCACATGCACTACCA 58.127 45.455 0.00 0.00 0.00 3.25
2496 3081 2.614057 GCCAGTAATCACATGCACTACC 59.386 50.000 0.00 0.00 0.00 3.18
2497 3082 3.270027 TGCCAGTAATCACATGCACTAC 58.730 45.455 0.00 0.00 31.08 2.73
2498 3083 3.625649 TGCCAGTAATCACATGCACTA 57.374 42.857 0.00 0.00 31.08 2.74
2499 3084 2.495155 TGCCAGTAATCACATGCACT 57.505 45.000 0.00 0.00 31.08 4.40
2500 3085 3.788333 AATGCCAGTAATCACATGCAC 57.212 42.857 0.00 0.00 36.61 4.57
2501 3086 5.911378 TTTAATGCCAGTAATCACATGCA 57.089 34.783 0.00 0.00 37.69 3.96
2502 3087 6.758593 CATTTAATGCCAGTAATCACATGC 57.241 37.500 0.00 0.00 0.00 4.06
2516 3101 8.339714 TGTTATAAGTCTAACCGCATTTAATGC 58.660 33.333 18.91 18.91 39.59 3.56
2519 3104 9.386010 ACATGTTATAAGTCTAACCGCATTTAA 57.614 29.630 0.00 0.00 31.83 1.52
2520 3105 8.822855 CACATGTTATAAGTCTAACCGCATTTA 58.177 33.333 0.00 0.00 31.83 1.40
2521 3106 7.551262 TCACATGTTATAAGTCTAACCGCATTT 59.449 33.333 0.00 0.00 31.83 2.32
2522 3107 7.045416 TCACATGTTATAAGTCTAACCGCATT 58.955 34.615 0.00 0.00 31.83 3.56
2523 3108 6.578944 TCACATGTTATAAGTCTAACCGCAT 58.421 36.000 0.00 0.00 31.83 4.73
2524 3109 5.968254 TCACATGTTATAAGTCTAACCGCA 58.032 37.500 0.00 0.00 31.83 5.69
2525 3110 6.018994 CCTTCACATGTTATAAGTCTAACCGC 60.019 42.308 0.00 0.00 31.83 5.68
2526 3111 7.222224 GTCCTTCACATGTTATAAGTCTAACCG 59.778 40.741 0.00 0.00 31.83 4.44
2527 3112 8.038944 TGTCCTTCACATGTTATAAGTCTAACC 58.961 37.037 0.00 0.00 31.83 2.85
2528 3113 8.997621 TGTCCTTCACATGTTATAAGTCTAAC 57.002 34.615 0.00 0.00 33.17 2.34
2531 3116 8.784043 GTTTTGTCCTTCACATGTTATAAGTCT 58.216 33.333 0.00 0.00 33.90 3.24
2532 3117 8.564574 TGTTTTGTCCTTCACATGTTATAAGTC 58.435 33.333 0.00 0.00 33.90 3.01
2533 3118 8.458573 TGTTTTGTCCTTCACATGTTATAAGT 57.541 30.769 0.00 0.00 33.90 2.24
2534 3119 8.783093 TCTGTTTTGTCCTTCACATGTTATAAG 58.217 33.333 0.00 0.31 33.90 1.73
2535 3120 8.684386 TCTGTTTTGTCCTTCACATGTTATAA 57.316 30.769 0.00 0.00 33.90 0.98
2536 3121 8.862325 ATCTGTTTTGTCCTTCACATGTTATA 57.138 30.769 0.00 0.00 33.90 0.98
2537 3122 7.094205 GGATCTGTTTTGTCCTTCACATGTTAT 60.094 37.037 0.00 0.00 33.90 1.89
2538 3123 6.206634 GGATCTGTTTTGTCCTTCACATGTTA 59.793 38.462 0.00 0.00 33.90 2.41
2539 3124 5.010012 GGATCTGTTTTGTCCTTCACATGTT 59.990 40.000 0.00 0.00 33.90 2.71
2540 3125 4.520492 GGATCTGTTTTGTCCTTCACATGT 59.480 41.667 0.00 0.00 33.90 3.21
2541 3126 4.520111 TGGATCTGTTTTGTCCTTCACATG 59.480 41.667 0.00 0.00 33.90 3.21
2542 3127 4.728772 TGGATCTGTTTTGTCCTTCACAT 58.271 39.130 0.00 0.00 33.90 3.21
2543 3128 4.163441 TGGATCTGTTTTGTCCTTCACA 57.837 40.909 0.00 0.00 33.15 3.58
2544 3129 4.520492 ACATGGATCTGTTTTGTCCTTCAC 59.480 41.667 0.00 0.00 33.15 3.18
2545 3130 4.520111 CACATGGATCTGTTTTGTCCTTCA 59.480 41.667 0.00 0.00 33.15 3.02
2546 3131 4.520492 ACACATGGATCTGTTTTGTCCTTC 59.480 41.667 0.00 0.00 33.15 3.46
2547 3132 4.473444 ACACATGGATCTGTTTTGTCCTT 58.527 39.130 0.00 0.00 33.15 3.36
2548 3133 4.104383 ACACATGGATCTGTTTTGTCCT 57.896 40.909 0.00 0.00 33.15 3.85
2549 3134 6.515272 AATACACATGGATCTGTTTTGTCC 57.485 37.500 0.00 0.00 0.00 4.02
2550 3135 7.370383 ACAAATACACATGGATCTGTTTTGTC 58.630 34.615 14.45 0.00 32.40 3.18
2551 3136 7.288810 ACAAATACACATGGATCTGTTTTGT 57.711 32.000 14.45 14.45 32.68 2.83
2552 3137 8.592105 AAACAAATACACATGGATCTGTTTTG 57.408 30.769 3.15 8.41 33.24 2.44
2553 3138 7.594758 CGAAACAAATACACATGGATCTGTTTT 59.405 33.333 9.39 0.00 36.26 2.43
2554 3139 7.083858 CGAAACAAATACACATGGATCTGTTT 58.916 34.615 8.03 8.03 38.19 2.83
2555 3140 6.349280 CCGAAACAAATACACATGGATCTGTT 60.349 38.462 0.00 0.00 0.00 3.16
2556 3141 5.123820 CCGAAACAAATACACATGGATCTGT 59.876 40.000 0.00 0.00 0.00 3.41
2557 3142 5.449041 CCCGAAACAAATACACATGGATCTG 60.449 44.000 0.00 0.00 0.00 2.90
2558 3143 4.640201 CCCGAAACAAATACACATGGATCT 59.360 41.667 0.00 0.00 0.00 2.75
2559 3144 4.398044 ACCCGAAACAAATACACATGGATC 59.602 41.667 0.00 0.00 0.00 3.36
2560 3145 4.340617 ACCCGAAACAAATACACATGGAT 58.659 39.130 0.00 0.00 0.00 3.41
2561 3146 3.757270 ACCCGAAACAAATACACATGGA 58.243 40.909 0.00 0.00 0.00 3.41
2562 3147 4.513198 AACCCGAAACAAATACACATGG 57.487 40.909 0.00 0.00 0.00 3.66
2563 3148 5.980116 TGAAAACCCGAAACAAATACACATG 59.020 36.000 0.00 0.00 0.00 3.21
2564 3149 6.150396 TGAAAACCCGAAACAAATACACAT 57.850 33.333 0.00 0.00 0.00 3.21
2565 3150 5.578005 TGAAAACCCGAAACAAATACACA 57.422 34.783 0.00 0.00 0.00 3.72
2566 3151 6.889019 TTTGAAAACCCGAAACAAATACAC 57.111 33.333 0.00 0.00 0.00 2.90
2567 3152 8.494016 AAATTTGAAAACCCGAAACAAATACA 57.506 26.923 0.00 0.00 39.26 2.29
2568 3153 9.776158 AAAAATTTGAAAACCCGAAACAAATAC 57.224 25.926 0.00 0.00 39.26 1.89
2575 3160 9.343103 GCTTTTTAAAAATTTGAAAACCCGAAA 57.657 25.926 13.55 0.00 33.75 3.46
2576 3161 7.968956 GGCTTTTTAAAAATTTGAAAACCCGAA 59.031 29.630 13.55 0.00 33.75 4.30
2577 3162 7.120726 TGGCTTTTTAAAAATTTGAAAACCCGA 59.879 29.630 13.55 0.00 35.66 5.14
2578 3163 7.251281 TGGCTTTTTAAAAATTTGAAAACCCG 58.749 30.769 13.55 0.00 35.66 5.28
2591 3176 9.553064 TGCTTTGAAAGATATGGCTTTTTAAAA 57.447 25.926 9.48 0.00 38.16 1.52
2592 3177 9.723601 ATGCTTTGAAAGATATGGCTTTTTAAA 57.276 25.926 9.48 0.00 38.16 1.52
2593 3178 9.153721 CATGCTTTGAAAGATATGGCTTTTTAA 57.846 29.630 9.48 0.00 38.16 1.52
2594 3179 8.313292 ACATGCTTTGAAAGATATGGCTTTTTA 58.687 29.630 19.53 0.00 38.16 1.52
2595 3180 7.118680 CACATGCTTTGAAAGATATGGCTTTTT 59.881 33.333 19.53 3.15 38.16 1.94
2596 3181 6.592607 CACATGCTTTGAAAGATATGGCTTTT 59.407 34.615 19.53 3.65 38.16 2.27
2597 3182 6.103997 CACATGCTTTGAAAGATATGGCTTT 58.896 36.000 19.53 0.00 40.59 3.51
2598 3183 5.186409 ACACATGCTTTGAAAGATATGGCTT 59.814 36.000 19.53 7.05 32.37 4.35
2599 3184 4.708421 ACACATGCTTTGAAAGATATGGCT 59.292 37.500 19.53 7.50 32.37 4.75
2600 3185 5.002464 ACACATGCTTTGAAAGATATGGC 57.998 39.130 19.53 3.44 32.37 4.40
2601 3186 5.268544 CGACACATGCTTTGAAAGATATGG 58.731 41.667 19.53 13.57 32.37 2.74
2602 3187 5.065090 TCCGACACATGCTTTGAAAGATATG 59.935 40.000 9.48 13.68 33.52 1.78
2603 3188 5.185454 TCCGACACATGCTTTGAAAGATAT 58.815 37.500 9.48 0.00 0.00 1.63
2604 3189 4.574892 TCCGACACATGCTTTGAAAGATA 58.425 39.130 9.48 0.00 0.00 1.98
2605 3190 3.411446 TCCGACACATGCTTTGAAAGAT 58.589 40.909 9.48 0.00 0.00 2.40
2606 3191 2.844946 TCCGACACATGCTTTGAAAGA 58.155 42.857 9.48 0.00 0.00 2.52
2607 3192 3.624326 TTCCGACACATGCTTTGAAAG 57.376 42.857 0.00 0.00 0.00 2.62
2608 3193 4.037327 TGAATTCCGACACATGCTTTGAAA 59.963 37.500 2.27 0.00 0.00 2.69
2609 3194 3.567585 TGAATTCCGACACATGCTTTGAA 59.432 39.130 2.27 0.00 0.00 2.69
2610 3195 3.145286 TGAATTCCGACACATGCTTTGA 58.855 40.909 2.27 0.00 0.00 2.69
2611 3196 3.189080 TCTGAATTCCGACACATGCTTTG 59.811 43.478 2.27 0.00 0.00 2.77
2612 3197 3.411446 TCTGAATTCCGACACATGCTTT 58.589 40.909 2.27 0.00 0.00 3.51
2613 3198 3.057969 TCTGAATTCCGACACATGCTT 57.942 42.857 2.27 0.00 0.00 3.91
2614 3199 2.768253 TCTGAATTCCGACACATGCT 57.232 45.000 2.27 0.00 0.00 3.79
2615 3200 2.289002 GGATCTGAATTCCGACACATGC 59.711 50.000 2.27 0.00 0.00 4.06
2616 3201 3.558829 CAGGATCTGAATTCCGACACATG 59.441 47.826 2.27 4.87 38.36 3.21
2617 3202 3.801698 CAGGATCTGAATTCCGACACAT 58.198 45.455 2.27 0.00 38.36 3.21
2618 3203 2.677902 GCAGGATCTGAATTCCGACACA 60.678 50.000 2.27 0.00 38.36 3.72
2619 3204 1.936547 GCAGGATCTGAATTCCGACAC 59.063 52.381 2.27 0.00 38.36 3.67
2620 3205 1.554617 TGCAGGATCTGAATTCCGACA 59.445 47.619 2.27 0.00 38.36 4.35
2621 3206 2.315925 TGCAGGATCTGAATTCCGAC 57.684 50.000 2.27 0.00 38.36 4.79
2622 3207 2.486013 CCATGCAGGATCTGAATTCCGA 60.486 50.000 0.00 2.01 41.22 4.55
2623 3208 1.878088 CCATGCAGGATCTGAATTCCG 59.122 52.381 0.00 0.00 41.22 4.30
2624 3209 2.158564 TCCCATGCAGGATCTGAATTCC 60.159 50.000 0.00 0.00 41.22 3.01
2625 3210 3.219176 TCCCATGCAGGATCTGAATTC 57.781 47.619 0.00 0.00 41.22 2.17
2626 3211 3.675348 TTCCCATGCAGGATCTGAATT 57.325 42.857 0.00 0.00 41.22 2.17
2627 3212 3.117246 ACATTCCCATGCAGGATCTGAAT 60.117 43.478 0.00 0.00 41.22 2.57
2628 3213 2.242965 ACATTCCCATGCAGGATCTGAA 59.757 45.455 0.00 0.00 41.22 3.02
2629 3214 1.848388 ACATTCCCATGCAGGATCTGA 59.152 47.619 0.00 0.00 41.22 3.27
2630 3215 2.359981 ACATTCCCATGCAGGATCTG 57.640 50.000 0.00 1.95 41.22 2.90
2631 3216 3.294214 GAAACATTCCCATGCAGGATCT 58.706 45.455 0.00 0.00 41.22 2.75
2632 3217 2.033801 CGAAACATTCCCATGCAGGATC 59.966 50.000 0.00 0.00 41.22 3.36
2633 3218 2.026641 CGAAACATTCCCATGCAGGAT 58.973 47.619 0.00 0.00 41.22 3.24
2634 3219 1.004161 TCGAAACATTCCCATGCAGGA 59.996 47.619 0.00 0.00 41.22 3.86
2635 3220 1.133025 GTCGAAACATTCCCATGCAGG 59.867 52.381 0.00 0.00 33.05 4.85
2636 3221 1.202065 CGTCGAAACATTCCCATGCAG 60.202 52.381 0.00 0.00 33.05 4.41
2637 3222 0.801872 CGTCGAAACATTCCCATGCA 59.198 50.000 0.00 0.00 33.05 3.96
2638 3223 1.083489 TCGTCGAAACATTCCCATGC 58.917 50.000 0.00 0.00 33.05 4.06
2639 3224 4.355543 AATTCGTCGAAACATTCCCATG 57.644 40.909 12.40 0.00 36.34 3.66
2640 3225 5.385509 AAAATTCGTCGAAACATTCCCAT 57.614 34.783 12.40 0.00 0.00 4.00
2641 3226 4.839668 AAAATTCGTCGAAACATTCCCA 57.160 36.364 12.40 0.00 0.00 4.37
2661 3246 3.701532 ACGAAAGTTGGCATCGAAAAA 57.298 38.095 14.47 0.00 46.40 1.94
2662 3247 3.810941 AGTACGAAAGTTGGCATCGAAAA 59.189 39.130 14.47 0.00 46.40 2.29
2663 3248 3.395639 AGTACGAAAGTTGGCATCGAAA 58.604 40.909 14.47 0.50 46.40 3.46
2664 3249 3.034721 AGTACGAAAGTTGGCATCGAA 57.965 42.857 14.47 0.00 46.40 3.71
2665 3250 2.736144 AGTACGAAAGTTGGCATCGA 57.264 45.000 14.47 0.00 46.40 3.59
2666 3251 5.918576 TCATATAGTACGAAAGTTGGCATCG 59.081 40.000 6.67 6.67 46.40 3.84
2667 3252 7.622256 GCATCATATAGTACGAAAGTTGGCATC 60.622 40.741 0.00 0.00 46.40 3.91
2668 3253 6.147821 GCATCATATAGTACGAAAGTTGGCAT 59.852 38.462 0.00 0.00 46.40 4.40
2669 3254 5.465390 GCATCATATAGTACGAAAGTTGGCA 59.535 40.000 0.00 0.00 46.40 4.92
2670 3255 5.465390 TGCATCATATAGTACGAAAGTTGGC 59.535 40.000 0.00 0.00 46.40 4.52
2671 3256 7.224753 AGTTGCATCATATAGTACGAAAGTTGG 59.775 37.037 0.00 0.00 46.40 3.77
2672 3257 8.131455 AGTTGCATCATATAGTACGAAAGTTG 57.869 34.615 0.00 0.00 46.40 3.16
2673 3258 8.718102 AAGTTGCATCATATAGTACGAAAGTT 57.282 30.769 0.00 0.00 46.40 2.66
2676 3261 9.811995 ACTAAAGTTGCATCATATAGTACGAAA 57.188 29.630 0.00 0.00 0.00 3.46
2688 3273 7.967854 GCACAATACAATACTAAAGTTGCATCA 59.032 33.333 0.00 0.00 0.00 3.07
2689 3274 7.967854 TGCACAATACAATACTAAAGTTGCATC 59.032 33.333 0.00 0.00 0.00 3.91
2690 3275 7.825681 TGCACAATACAATACTAAAGTTGCAT 58.174 30.769 0.00 0.00 0.00 3.96
2691 3276 7.208225 TGCACAATACAATACTAAAGTTGCA 57.792 32.000 0.00 0.00 0.00 4.08
2692 3277 7.807907 AGTTGCACAATACAATACTAAAGTTGC 59.192 33.333 0.00 0.00 0.00 4.17
2693 3278 9.677567 AAGTTGCACAATACAATACTAAAGTTG 57.322 29.630 0.00 0.00 0.00 3.16
2744 3329 9.289782 GCCCTATTCTCACATGAAATATAAACT 57.710 33.333 0.00 0.00 0.00 2.66
2824 3409 0.672342 GGAGCCCTCGCGAACTATTA 59.328 55.000 11.33 0.00 41.18 0.98
2881 3466 2.912956 AGTTTCTGTCATTGCCCTAGGA 59.087 45.455 11.48 0.00 0.00 2.94
2931 3516 3.260380 GCAGCCATCTATGAGGAGTGTAT 59.740 47.826 0.00 0.00 0.00 2.29
3011 3596 2.052104 CAAGGTGGAAATCGGGGCC 61.052 63.158 0.00 0.00 0.00 5.80
3016 3601 1.666888 GCTGCAACAAGGTGGAAATCG 60.667 52.381 0.00 0.00 0.00 3.34
3020 3605 0.685785 TTGGCTGCAACAAGGTGGAA 60.686 50.000 0.50 0.00 0.00 3.53
3119 5449 2.281139 TTCGTTGCGGCATCCACA 60.281 55.556 2.28 0.00 0.00 4.17
3149 5479 0.979665 CCAGGGCCATCATACGAGAT 59.020 55.000 6.18 0.00 0.00 2.75
3152 5482 1.407656 GGACCAGGGCCATCATACGA 61.408 60.000 6.40 0.00 0.00 3.43
3197 5527 0.667792 GCCTCAATATCGACGCCTCC 60.668 60.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.