Multiple sequence alignment - TraesCS2A01G154500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G154500 chr2A 100.000 4317 0 0 1 4317 101915964 101911648 0.000000e+00 7973.0
1 TraesCS2A01G154500 chr2A 83.417 199 21 6 400 598 101991498 101991312 1.600000e-39 174.0
2 TraesCS2A01G154500 chr2D 88.418 2970 224 49 410 3296 102878050 102875118 0.000000e+00 3469.0
3 TraesCS2A01G154500 chr2D 88.578 823 54 19 3496 4317 102874821 102874038 0.000000e+00 963.0
4 TraesCS2A01G154500 chr2D 90.047 211 19 1 2020 2230 639844153 639843945 5.500000e-69 272.0
5 TraesCS2A01G154500 chr2D 90.047 211 18 2 2020 2230 638083238 638083031 1.980000e-68 270.0
6 TraesCS2A01G154500 chr2D 87.391 230 18 7 2325 2548 101773692 101773916 1.990000e-63 254.0
7 TraesCS2A01G154500 chr2D 87.391 230 18 7 2325 2548 638082997 638082773 1.990000e-63 254.0
8 TraesCS2A01G154500 chr2D 85.926 135 14 4 1620 1752 638083451 638083320 5.820000e-29 139.0
9 TraesCS2A01G154500 chr2D 85.185 135 15 4 1620 1752 639844366 639844235 2.710000e-27 134.0
10 TraesCS2A01G154500 chr2B 88.949 1294 74 30 400 1672 154256593 154255348 0.000000e+00 1533.0
11 TraesCS2A01G154500 chr2B 91.724 1015 44 16 3313 4317 154253593 154252609 0.000000e+00 1373.0
12 TraesCS2A01G154500 chr2B 89.640 1110 64 14 2230 3312 154254891 154253806 0.000000e+00 1365.0
13 TraesCS2A01G154500 chr2B 91.469 211 16 1 2020 2230 154255131 154254923 5.460000e-74 289.0
14 TraesCS2A01G154500 chr1B 94.974 378 16 3 17 392 60488740 60489116 1.340000e-164 590.0
15 TraesCS2A01G154500 chr3B 93.606 391 22 3 17 405 659270659 659271048 8.050000e-162 580.0
16 TraesCS2A01G154500 chr3B 85.227 88 11 2 1827 1912 644507453 644507540 5.950000e-14 89.8
17 TraesCS2A01G154500 chr3B 100.000 32 0 0 1759 1790 477628547 477628578 4.660000e-05 60.2
18 TraesCS2A01G154500 chr5B 87.042 355 39 6 18 370 659300520 659300171 1.130000e-105 394.0
19 TraesCS2A01G154500 chr5A 82.776 389 63 4 17 403 466035124 466034738 1.150000e-90 344.0
20 TraesCS2A01G154500 chr1A 82.474 388 65 3 17 402 338840175 338840561 1.920000e-88 337.0
21 TraesCS2A01G154500 chr1A 83.168 101 14 2 1826 1923 287687679 287687579 5.950000e-14 89.8
22 TraesCS2A01G154500 chr6A 81.701 388 64 6 17 400 356482302 356482686 2.510000e-82 316.0
23 TraesCS2A01G154500 chr5D 90.995 211 17 1 2020 2230 281947803 281948011 2.540000e-72 283.0
24 TraesCS2A01G154500 chrUn 90.047 211 19 1 2020 2230 89219020 89218812 5.500000e-69 272.0
25 TraesCS2A01G154500 chrUn 84.444 135 16 4 1620 1752 89219233 89219102 1.260000e-25 128.0
26 TraesCS2A01G154500 chr3D 90.047 211 19 1 2020 2230 26599815 26599607 5.500000e-69 272.0
27 TraesCS2A01G154500 chr3D 87.826 230 17 7 2325 2548 578757733 578757509 4.280000e-65 259.0
28 TraesCS2A01G154500 chr3D 85.185 135 15 4 1620 1752 578758188 578758057 2.710000e-27 134.0
29 TraesCS2A01G154500 chr7D 89.573 211 20 1 2020 2230 569998210 569998002 2.560000e-67 267.0
30 TraesCS2A01G154500 chr7D 87.391 230 18 7 2325 2548 569997968 569997744 1.990000e-63 254.0
31 TraesCS2A01G154500 chr7D 85.185 135 15 4 1620 1752 135721221 135721090 2.710000e-27 134.0
32 TraesCS2A01G154500 chr7D 91.176 68 6 0 1829 1896 567735196 567735129 4.600000e-15 93.5
33 TraesCS2A01G154500 chr7D 85.714 84 10 2 1824 1906 567735110 567735192 2.140000e-13 87.9
34 TraesCS2A01G154500 chr6D 89.573 211 20 1 2020 2230 244144662 244144870 2.560000e-67 267.0
35 TraesCS2A01G154500 chr6D 87.391 230 18 7 2325 2548 244144904 244145128 1.990000e-63 254.0
36 TraesCS2A01G154500 chr6D 85.185 135 15 4 1620 1752 244144449 244144580 2.710000e-27 134.0
37 TraesCS2A01G154500 chr6D 87.209 86 9 2 1823 1906 81922764 81922679 3.550000e-16 97.1
38 TraesCS2A01G154500 chr6D 83.908 87 12 2 1827 1912 437953675 437953760 9.950000e-12 82.4
39 TraesCS2A01G154500 chr6B 87.391 230 18 7 2325 2548 54551436 54551212 1.990000e-63 254.0
40 TraesCS2A01G154500 chr6B 89.189 74 7 1 1826 1898 156651311 156651238 1.650000e-14 91.6
41 TraesCS2A01G154500 chr1D 87.391 230 18 7 2325 2548 206222345 206222121 1.990000e-63 254.0
42 TraesCS2A01G154500 chr1D 85.185 135 15 4 1620 1752 206222831 206222700 2.710000e-27 134.0
43 TraesCS2A01G154500 chr4B 85.185 135 15 4 1620 1752 16322533 16322402 2.710000e-27 134.0
44 TraesCS2A01G154500 chr7A 85.714 84 10 2 1824 1906 654796945 654797027 2.140000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G154500 chr2A 101911648 101915964 4316 True 7973.000000 7973 100.0000 1 4317 1 chr2A.!!$R1 4316
1 TraesCS2A01G154500 chr2D 102874038 102878050 4012 True 2216.000000 3469 88.4980 410 4317 2 chr2D.!!$R1 3907
2 TraesCS2A01G154500 chr2D 638082773 638083451 678 True 221.000000 270 87.7880 1620 2548 3 chr2D.!!$R2 928
3 TraesCS2A01G154500 chr2B 154252609 154256593 3984 True 1140.000000 1533 90.4455 400 4317 4 chr2B.!!$R1 3917
4 TraesCS2A01G154500 chr6D 244144449 244145128 679 False 218.333333 267 87.3830 1620 2548 3 chr6D.!!$F2 928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.027586 GGCGAACGATTACACATGCC 59.972 55.0 0.00 0.00 0.00 4.40 F
165 166 0.035534 ACGATTACACATGCCTGGCA 60.036 50.0 25.65 25.65 44.86 4.92 F
301 302 0.037975 CCAAACATGCTTGTCCCAGC 60.038 55.0 5.61 0.00 40.55 4.85 F
392 393 0.104120 GGCCAGGACACAAACCAAAC 59.896 55.0 0.00 0.00 0.00 2.93 F
1520 1597 0.106335 CAGAGCTCCCAGATTGCGAT 59.894 55.0 10.93 0.00 0.00 4.58 F
1525 1602 0.661552 CTCCCAGATTGCGATTGCTG 59.338 55.0 6.47 0.00 43.34 4.41 F
3225 3443 0.529378 GGCAGTTCAGCTTGGAATGG 59.471 55.0 0.00 0.00 34.17 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1818 0.037326 AGTGGCGTATCACTGGTGTG 60.037 55.000 7.25 0.00 45.27 3.82 R
1699 1834 0.873054 CCAGCAAGAGCAGAACAGTG 59.127 55.000 0.00 0.00 45.49 3.66 R
1743 1878 3.906218 AGGGAGTATCATGCTGCTATTGA 59.094 43.478 0.00 2.11 36.25 2.57 R
2308 2476 2.750166 TGAGTTCAAGGTGTTTTTGCGA 59.250 40.909 0.00 0.00 0.00 5.10 R
3207 3425 1.251251 ACCATTCCAAGCTGAACTGC 58.749 50.000 0.00 0.00 0.00 4.40 R
3261 3479 2.351924 TTTGGCCGCCAAACTCTCCT 62.352 55.000 29.88 0.00 46.92 3.69 R
4107 4599 1.185315 GCCCTTTTCTGCATGCCTAA 58.815 50.000 16.68 6.46 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.743018 CCTTCCTGGCGATTTGGT 57.257 55.556 0.00 0.00 0.00 3.67
18 19 2.183409 CCTTCCTGGCGATTTGGTG 58.817 57.895 0.00 0.00 0.00 4.17
19 20 1.508088 CTTCCTGGCGATTTGGTGC 59.492 57.895 0.00 0.00 0.00 5.01
26 27 3.107017 GCGATTTGGTGCCTGAAAC 57.893 52.632 0.00 0.00 0.00 2.78
27 28 0.388520 GCGATTTGGTGCCTGAAACC 60.389 55.000 0.00 0.00 38.26 3.27
28 29 1.247567 CGATTTGGTGCCTGAAACCT 58.752 50.000 0.00 0.00 38.60 3.50
29 30 1.068333 CGATTTGGTGCCTGAAACCTG 60.068 52.381 0.00 0.00 38.60 4.00
30 31 0.681175 ATTTGGTGCCTGAAACCTGC 59.319 50.000 0.00 0.00 38.60 4.85
31 32 1.398958 TTTGGTGCCTGAAACCTGCC 61.399 55.000 0.00 0.00 38.60 4.85
32 33 2.116125 GGTGCCTGAAACCTGCCT 59.884 61.111 0.00 0.00 34.66 4.75
33 34 2.270986 GGTGCCTGAAACCTGCCTG 61.271 63.158 0.00 0.00 34.66 4.85
34 35 1.228245 GTGCCTGAAACCTGCCTGA 60.228 57.895 0.00 0.00 0.00 3.86
35 36 1.073722 TGCCTGAAACCTGCCTGAG 59.926 57.895 0.00 0.00 0.00 3.35
36 37 1.376466 GCCTGAAACCTGCCTGAGA 59.624 57.895 0.00 0.00 0.00 3.27
37 38 0.957888 GCCTGAAACCTGCCTGAGAC 60.958 60.000 0.00 0.00 0.00 3.36
38 39 0.397941 CCTGAAACCTGCCTGAGACA 59.602 55.000 0.00 0.00 0.00 3.41
39 40 1.004044 CCTGAAACCTGCCTGAGACAT 59.996 52.381 0.00 0.00 0.00 3.06
40 41 2.082231 CTGAAACCTGCCTGAGACATG 58.918 52.381 0.00 0.00 0.00 3.21
41 42 1.421268 TGAAACCTGCCTGAGACATGT 59.579 47.619 0.00 0.00 0.00 3.21
42 43 2.158623 TGAAACCTGCCTGAGACATGTT 60.159 45.455 0.00 0.00 0.00 2.71
43 44 2.664402 AACCTGCCTGAGACATGTTT 57.336 45.000 0.00 0.00 0.00 2.83
44 45 1.901591 ACCTGCCTGAGACATGTTTG 58.098 50.000 0.00 0.00 0.00 2.93
45 46 1.171308 CCTGCCTGAGACATGTTTGG 58.829 55.000 0.00 1.42 0.00 3.28
46 47 1.271543 CCTGCCTGAGACATGTTTGGA 60.272 52.381 0.00 0.00 0.00 3.53
47 48 2.619849 CCTGCCTGAGACATGTTTGGAT 60.620 50.000 0.00 0.00 0.00 3.41
48 49 3.370846 CCTGCCTGAGACATGTTTGGATA 60.371 47.826 0.00 0.00 0.00 2.59
49 50 3.875727 CTGCCTGAGACATGTTTGGATAG 59.124 47.826 0.00 0.00 0.00 2.08
50 51 2.615912 GCCTGAGACATGTTTGGATAGC 59.384 50.000 0.00 0.00 0.00 2.97
51 52 2.868583 CCTGAGACATGTTTGGATAGCG 59.131 50.000 0.00 0.00 0.00 4.26
52 53 3.525537 CTGAGACATGTTTGGATAGCGT 58.474 45.455 0.00 0.00 0.00 5.07
53 54 3.521560 TGAGACATGTTTGGATAGCGTC 58.478 45.455 0.00 0.00 0.00 5.19
62 63 3.207677 GGATAGCGTCCTGAGCATG 57.792 57.895 4.16 0.00 44.16 4.06
63 64 0.390860 GGATAGCGTCCTGAGCATGT 59.609 55.000 4.16 0.00 44.16 3.21
64 65 1.495878 GATAGCGTCCTGAGCATGTG 58.504 55.000 0.00 0.00 37.01 3.21
65 66 1.067669 GATAGCGTCCTGAGCATGTGA 59.932 52.381 0.00 0.00 37.01 3.58
66 67 0.173481 TAGCGTCCTGAGCATGTGAC 59.827 55.000 0.00 0.00 37.01 3.67
67 68 1.374631 GCGTCCTGAGCATGTGACA 60.375 57.895 0.00 0.00 34.19 3.58
68 69 1.357258 GCGTCCTGAGCATGTGACAG 61.357 60.000 0.00 1.99 34.19 3.51
69 70 0.244721 CGTCCTGAGCATGTGACAGA 59.755 55.000 14.19 0.00 34.07 3.41
70 71 1.337167 CGTCCTGAGCATGTGACAGAA 60.337 52.381 14.19 0.00 34.07 3.02
71 72 2.676176 CGTCCTGAGCATGTGACAGAAT 60.676 50.000 14.19 0.00 34.07 2.40
72 73 2.676839 GTCCTGAGCATGTGACAGAATG 59.323 50.000 14.19 0.00 46.00 2.67
77 78 2.273370 GCATGTGACAGAATGCTTGG 57.727 50.000 13.43 0.00 44.64 3.61
78 79 1.734707 GCATGTGACAGAATGCTTGGC 60.735 52.381 13.43 0.00 44.64 4.52
79 80 1.135199 CATGTGACAGAATGCTTGGCC 60.135 52.381 0.00 0.00 42.53 5.36
80 81 0.111061 TGTGACAGAATGCTTGGCCT 59.889 50.000 3.32 0.00 42.53 5.19
81 82 0.524862 GTGACAGAATGCTTGGCCTG 59.475 55.000 3.32 0.00 42.53 4.85
82 83 0.609957 TGACAGAATGCTTGGCCTGG 60.610 55.000 3.32 0.00 42.53 4.45
83 84 0.322816 GACAGAATGCTTGGCCTGGA 60.323 55.000 3.32 0.00 42.53 3.86
84 85 0.112995 ACAGAATGCTTGGCCTGGAA 59.887 50.000 3.32 0.00 42.53 3.53
85 86 1.259609 CAGAATGCTTGGCCTGGAAA 58.740 50.000 3.32 0.00 0.00 3.13
86 87 1.619827 CAGAATGCTTGGCCTGGAAAA 59.380 47.619 3.32 0.00 0.00 2.29
87 88 1.897802 AGAATGCTTGGCCTGGAAAAG 59.102 47.619 3.32 0.00 0.00 2.27
88 89 0.322648 AATGCTTGGCCTGGAAAAGC 59.677 50.000 20.64 20.64 45.20 3.51
93 94 3.686760 GGCCTGGAAAAGCCTGTC 58.313 61.111 0.00 0.00 46.14 3.51
94 95 1.228552 GGCCTGGAAAAGCCTGTCA 60.229 57.895 0.00 0.00 46.14 3.58
95 96 1.527433 GGCCTGGAAAAGCCTGTCAC 61.527 60.000 0.00 0.00 46.14 3.67
96 97 1.527433 GCCTGGAAAAGCCTGTCACC 61.527 60.000 0.00 0.00 37.63 4.02
97 98 0.178992 CCTGGAAAAGCCTGTCACCA 60.179 55.000 0.00 0.00 37.63 4.17
98 99 1.548582 CCTGGAAAAGCCTGTCACCAT 60.549 52.381 0.00 0.00 37.63 3.55
99 100 1.815003 CTGGAAAAGCCTGTCACCATC 59.185 52.381 0.00 0.00 37.63 3.51
100 101 1.144708 TGGAAAAGCCTGTCACCATCA 59.855 47.619 0.00 0.00 37.63 3.07
101 102 2.225091 TGGAAAAGCCTGTCACCATCAT 60.225 45.455 0.00 0.00 37.63 2.45
102 103 2.827921 GGAAAAGCCTGTCACCATCATT 59.172 45.455 0.00 0.00 0.00 2.57
103 104 4.016444 GGAAAAGCCTGTCACCATCATTA 58.984 43.478 0.00 0.00 0.00 1.90
104 105 4.096984 GGAAAAGCCTGTCACCATCATTAG 59.903 45.833 0.00 0.00 0.00 1.73
105 106 2.338577 AGCCTGTCACCATCATTAGC 57.661 50.000 0.00 0.00 0.00 3.09
106 107 1.133976 AGCCTGTCACCATCATTAGCC 60.134 52.381 0.00 0.00 0.00 3.93
107 108 1.133976 GCCTGTCACCATCATTAGCCT 60.134 52.381 0.00 0.00 0.00 4.58
108 109 2.569059 CCTGTCACCATCATTAGCCTG 58.431 52.381 0.00 0.00 0.00 4.85
109 110 2.569059 CTGTCACCATCATTAGCCTGG 58.431 52.381 0.00 0.00 36.09 4.45
110 111 1.312815 GTCACCATCATTAGCCTGGC 58.687 55.000 11.65 11.65 33.12 4.85
111 112 0.918258 TCACCATCATTAGCCTGGCA 59.082 50.000 22.65 0.22 33.12 4.92
112 113 1.284491 TCACCATCATTAGCCTGGCAA 59.716 47.619 22.65 13.29 33.12 4.52
113 114 2.101783 CACCATCATTAGCCTGGCAAA 58.898 47.619 22.65 5.44 33.12 3.68
114 115 2.696707 CACCATCATTAGCCTGGCAAAT 59.303 45.455 22.65 2.30 33.12 2.32
115 116 2.961062 ACCATCATTAGCCTGGCAAATC 59.039 45.455 22.65 0.00 33.12 2.17
116 117 2.298163 CCATCATTAGCCTGGCAAATCC 59.702 50.000 22.65 0.00 0.00 3.01
117 118 2.824689 TCATTAGCCTGGCAAATCCA 57.175 45.000 22.65 0.00 44.18 3.41
124 125 2.525075 TGGCAAATCCAGGCACCA 59.475 55.556 0.00 0.00 40.72 4.17
125 126 1.907807 TGGCAAATCCAGGCACCAC 60.908 57.895 0.00 0.00 40.72 4.16
126 127 2.649129 GGCAAATCCAGGCACCACC 61.649 63.158 0.00 0.00 39.61 4.61
127 128 1.907807 GCAAATCCAGGCACCACCA 60.908 57.895 0.00 0.00 43.14 4.17
128 129 1.259840 GCAAATCCAGGCACCACCAT 61.260 55.000 0.00 0.00 43.14 3.55
129 130 1.269012 CAAATCCAGGCACCACCATT 58.731 50.000 0.00 0.00 43.14 3.16
130 131 2.455557 CAAATCCAGGCACCACCATTA 58.544 47.619 0.00 0.00 43.14 1.90
131 132 2.428171 CAAATCCAGGCACCACCATTAG 59.572 50.000 0.00 0.00 43.14 1.73
132 133 0.106519 ATCCAGGCACCACCATTAGC 60.107 55.000 0.00 0.00 43.14 3.09
133 134 1.001020 CCAGGCACCACCATTAGCA 60.001 57.895 0.00 0.00 43.14 3.49
134 135 0.396139 CCAGGCACCACCATTAGCAT 60.396 55.000 0.00 0.00 43.14 3.79
135 136 0.742505 CAGGCACCACCATTAGCATG 59.257 55.000 0.00 0.00 43.14 4.06
142 143 4.186136 CCATTAGCATGGGCCAGG 57.814 61.111 15.10 15.10 45.99 4.45
143 144 2.205152 CCATTAGCATGGGCCAGGC 61.205 63.158 34.28 34.28 45.99 4.85
144 145 2.203394 ATTAGCATGGGCCAGGCG 60.203 61.111 34.31 16.10 46.20 5.52
145 146 2.756042 ATTAGCATGGGCCAGGCGA 61.756 57.895 34.31 28.47 46.20 5.54
146 147 2.283143 ATTAGCATGGGCCAGGCGAA 62.283 55.000 34.16 34.16 46.20 4.70
147 148 3.697439 TAGCATGGGCCAGGCGAAC 62.697 63.158 34.31 11.41 46.20 3.95
149 150 4.776322 CATGGGCCAGGCGAACGA 62.776 66.667 13.78 0.00 0.00 3.85
150 151 3.797353 ATGGGCCAGGCGAACGAT 61.797 61.111 13.78 0.00 0.00 3.73
151 152 3.344137 ATGGGCCAGGCGAACGATT 62.344 57.895 13.78 0.00 0.00 3.34
152 153 1.978455 ATGGGCCAGGCGAACGATTA 61.978 55.000 13.78 0.00 0.00 1.75
153 154 2.178235 GGGCCAGGCGAACGATTAC 61.178 63.158 4.39 0.00 0.00 1.89
154 155 1.448893 GGCCAGGCGAACGATTACA 60.449 57.895 5.00 0.00 0.00 2.41
155 156 1.702491 GGCCAGGCGAACGATTACAC 61.702 60.000 5.00 0.00 0.00 2.90
156 157 1.017177 GCCAGGCGAACGATTACACA 61.017 55.000 0.00 0.00 0.00 3.72
157 158 1.651987 CCAGGCGAACGATTACACAT 58.348 50.000 0.00 0.00 0.00 3.21
158 159 1.327460 CCAGGCGAACGATTACACATG 59.673 52.381 0.00 0.00 0.00 3.21
159 160 1.006832 AGGCGAACGATTACACATGC 58.993 50.000 0.00 0.00 0.00 4.06
160 161 0.027586 GGCGAACGATTACACATGCC 59.972 55.000 0.00 0.00 0.00 4.40
161 162 1.006832 GCGAACGATTACACATGCCT 58.993 50.000 0.00 0.00 0.00 4.75
162 163 1.267532 GCGAACGATTACACATGCCTG 60.268 52.381 0.00 0.00 0.00 4.85
163 164 1.327460 CGAACGATTACACATGCCTGG 59.673 52.381 0.00 0.00 0.00 4.45
164 165 1.064060 GAACGATTACACATGCCTGGC 59.936 52.381 12.87 12.87 0.00 4.85
165 166 0.035534 ACGATTACACATGCCTGGCA 60.036 50.000 25.65 25.65 44.86 4.92
166 167 0.378257 CGATTACACATGCCTGGCAC 59.622 55.000 25.99 7.59 43.04 5.01
167 168 0.378257 GATTACACATGCCTGGCACG 59.622 55.000 25.99 19.91 43.04 5.34
168 169 0.322456 ATTACACATGCCTGGCACGT 60.322 50.000 25.99 20.75 43.04 4.49
170 171 4.409218 CACATGCCTGGCACGTGC 62.409 66.667 31.39 32.15 45.10 5.34
180 181 2.943653 GCACGTGCCTGGTTGTAC 59.056 61.111 30.12 0.00 34.31 2.90
181 182 1.890041 GCACGTGCCTGGTTGTACA 60.890 57.895 30.12 0.00 34.31 2.90
182 183 1.234615 GCACGTGCCTGGTTGTACAT 61.235 55.000 30.12 0.00 34.31 2.29
183 184 1.234821 CACGTGCCTGGTTGTACATT 58.765 50.000 0.82 0.00 0.00 2.71
184 185 2.418692 CACGTGCCTGGTTGTACATTA 58.581 47.619 0.82 0.00 0.00 1.90
185 186 2.415168 CACGTGCCTGGTTGTACATTAG 59.585 50.000 0.82 0.00 0.00 1.73
186 187 2.038033 ACGTGCCTGGTTGTACATTAGT 59.962 45.455 0.00 0.00 0.00 2.24
187 188 3.258872 ACGTGCCTGGTTGTACATTAGTA 59.741 43.478 0.00 0.00 0.00 1.82
213 214 8.739972 ACTAAAATATTTTGCTAGTTCAGTGGG 58.260 33.333 21.19 0.00 0.00 4.61
214 215 5.582689 AATATTTTGCTAGTTCAGTGGGC 57.417 39.130 0.00 0.00 0.00 5.36
215 216 2.656947 TTTTGCTAGTTCAGTGGGCT 57.343 45.000 0.00 0.00 0.00 5.19
216 217 2.185004 TTTGCTAGTTCAGTGGGCTC 57.815 50.000 0.00 0.00 0.00 4.70
217 218 0.324943 TTGCTAGTTCAGTGGGCTCC 59.675 55.000 0.00 0.00 0.00 4.70
218 219 0.835971 TGCTAGTTCAGTGGGCTCCA 60.836 55.000 0.00 0.00 0.00 3.86
228 229 1.369692 TGGGCTCCACAACTGTACG 59.630 57.895 0.00 0.00 0.00 3.67
229 230 2.033194 GGGCTCCACAACTGTACGC 61.033 63.158 0.00 0.00 0.00 4.42
230 231 1.301401 GGCTCCACAACTGTACGCA 60.301 57.895 0.00 0.00 0.00 5.24
231 232 0.673644 GGCTCCACAACTGTACGCAT 60.674 55.000 0.00 0.00 0.00 4.73
232 233 1.156736 GCTCCACAACTGTACGCATT 58.843 50.000 0.00 0.00 0.00 3.56
233 234 1.128692 GCTCCACAACTGTACGCATTC 59.871 52.381 0.00 0.00 0.00 2.67
234 235 2.688507 CTCCACAACTGTACGCATTCT 58.311 47.619 0.00 0.00 0.00 2.40
235 236 3.067106 CTCCACAACTGTACGCATTCTT 58.933 45.455 0.00 0.00 0.00 2.52
236 237 2.805671 TCCACAACTGTACGCATTCTTG 59.194 45.455 0.00 0.00 0.00 3.02
237 238 2.805671 CCACAACTGTACGCATTCTTGA 59.194 45.455 0.00 0.00 0.00 3.02
238 239 3.363970 CCACAACTGTACGCATTCTTGAC 60.364 47.826 0.00 0.00 0.00 3.18
239 240 2.806244 ACAACTGTACGCATTCTTGACC 59.194 45.455 0.00 0.00 0.00 4.02
240 241 2.094762 ACTGTACGCATTCTTGACCC 57.905 50.000 0.00 0.00 0.00 4.46
241 242 1.623811 ACTGTACGCATTCTTGACCCT 59.376 47.619 0.00 0.00 0.00 4.34
242 243 2.829720 ACTGTACGCATTCTTGACCCTA 59.170 45.455 0.00 0.00 0.00 3.53
243 244 3.451178 ACTGTACGCATTCTTGACCCTAT 59.549 43.478 0.00 0.00 0.00 2.57
244 245 4.647853 ACTGTACGCATTCTTGACCCTATA 59.352 41.667 0.00 0.00 0.00 1.31
245 246 5.128171 ACTGTACGCATTCTTGACCCTATAA 59.872 40.000 0.00 0.00 0.00 0.98
246 247 5.979993 TGTACGCATTCTTGACCCTATAAA 58.020 37.500 0.00 0.00 0.00 1.40
247 248 6.408035 TGTACGCATTCTTGACCCTATAAAA 58.592 36.000 0.00 0.00 0.00 1.52
248 249 7.051623 TGTACGCATTCTTGACCCTATAAAAT 58.948 34.615 0.00 0.00 0.00 1.82
249 250 8.205512 TGTACGCATTCTTGACCCTATAAAATA 58.794 33.333 0.00 0.00 0.00 1.40
250 251 9.216117 GTACGCATTCTTGACCCTATAAAATAT 57.784 33.333 0.00 0.00 0.00 1.28
251 252 8.691661 ACGCATTCTTGACCCTATAAAATATT 57.308 30.769 0.00 0.00 0.00 1.28
252 253 8.784043 ACGCATTCTTGACCCTATAAAATATTC 58.216 33.333 0.00 0.00 0.00 1.75
253 254 9.003658 CGCATTCTTGACCCTATAAAATATTCT 57.996 33.333 0.00 0.00 0.00 2.40
270 271 9.591792 AAAATATTCTCTAATGCTTTTTGAGGC 57.408 29.630 12.00 0.00 0.00 4.70
271 272 5.588958 ATTCTCTAATGCTTTTTGAGGCC 57.411 39.130 0.00 0.00 0.00 5.19
272 273 4.032960 TCTCTAATGCTTTTTGAGGCCA 57.967 40.909 5.01 0.00 0.00 5.36
273 274 4.406456 TCTCTAATGCTTTTTGAGGCCAA 58.594 39.130 5.01 0.00 0.00 4.52
274 275 4.460382 TCTCTAATGCTTTTTGAGGCCAAG 59.540 41.667 5.01 0.00 33.23 3.61
275 276 2.845363 AATGCTTTTTGAGGCCAAGG 57.155 45.000 5.01 0.00 33.23 3.61
276 277 0.322648 ATGCTTTTTGAGGCCAAGGC 59.677 50.000 5.01 1.52 41.06 4.35
277 278 1.047596 TGCTTTTTGAGGCCAAGGCA 61.048 50.000 13.87 5.79 44.11 4.75
278 279 0.322648 GCTTTTTGAGGCCAAGGCAT 59.677 50.000 13.87 5.49 44.11 4.40
284 285 2.853316 AGGCCAAGGCATCAACCA 59.147 55.556 13.87 0.00 44.11 3.67
285 286 1.155859 AGGCCAAGGCATCAACCAA 59.844 52.632 13.87 0.00 44.11 3.67
286 287 0.471591 AGGCCAAGGCATCAACCAAA 60.472 50.000 13.87 0.00 44.11 3.28
287 288 0.320683 GGCCAAGGCATCAACCAAAC 60.321 55.000 13.87 0.00 44.11 2.93
288 289 0.392336 GCCAAGGCATCAACCAAACA 59.608 50.000 6.14 0.00 41.49 2.83
289 290 1.002315 GCCAAGGCATCAACCAAACAT 59.998 47.619 6.14 0.00 41.49 2.71
290 291 2.690786 CCAAGGCATCAACCAAACATG 58.309 47.619 0.00 0.00 0.00 3.21
291 292 2.070783 CAAGGCATCAACCAAACATGC 58.929 47.619 0.00 0.00 41.93 4.06
292 293 1.636148 AGGCATCAACCAAACATGCT 58.364 45.000 0.00 0.00 42.24 3.79
293 294 1.972795 AGGCATCAACCAAACATGCTT 59.027 42.857 0.00 0.00 42.24 3.91
294 295 2.070783 GGCATCAACCAAACATGCTTG 58.929 47.619 1.68 1.68 42.24 4.01
295 296 2.548493 GGCATCAACCAAACATGCTTGT 60.548 45.455 7.99 0.00 42.24 3.16
296 297 2.733026 GCATCAACCAAACATGCTTGTC 59.267 45.455 5.61 0.00 39.92 3.18
297 298 3.319755 CATCAACCAAACATGCTTGTCC 58.680 45.455 5.61 0.00 34.06 4.02
298 299 1.686052 TCAACCAAACATGCTTGTCCC 59.314 47.619 5.61 0.00 34.06 4.46
299 300 1.411977 CAACCAAACATGCTTGTCCCA 59.588 47.619 5.61 0.00 34.06 4.37
300 301 1.331214 ACCAAACATGCTTGTCCCAG 58.669 50.000 5.61 0.00 34.06 4.45
301 302 0.037975 CCAAACATGCTTGTCCCAGC 60.038 55.000 5.61 0.00 40.55 4.85
302 303 0.037975 CAAACATGCTTGTCCCAGCC 60.038 55.000 5.61 0.00 39.25 4.85
303 304 0.469705 AAACATGCTTGTCCCAGCCA 60.470 50.000 5.61 0.00 39.25 4.75
304 305 0.469705 AACATGCTTGTCCCAGCCAA 60.470 50.000 5.61 0.00 39.25 4.52
305 306 0.251922 ACATGCTTGTCCCAGCCAAT 60.252 50.000 0.00 0.00 39.25 3.16
306 307 0.458669 CATGCTTGTCCCAGCCAATC 59.541 55.000 0.00 0.00 39.25 2.67
307 308 0.685458 ATGCTTGTCCCAGCCAATCC 60.685 55.000 0.00 0.00 39.25 3.01
308 309 1.000396 GCTTGTCCCAGCCAATCCT 60.000 57.895 0.00 0.00 33.21 3.24
309 310 1.318158 GCTTGTCCCAGCCAATCCTG 61.318 60.000 0.00 0.00 33.21 3.86
310 311 1.304381 TTGTCCCAGCCAATCCTGC 60.304 57.895 0.00 0.00 0.00 4.85
311 312 2.825836 GTCCCAGCCAATCCTGCG 60.826 66.667 0.00 0.00 0.00 5.18
312 313 4.802051 TCCCAGCCAATCCTGCGC 62.802 66.667 0.00 0.00 0.00 6.09
314 315 3.515286 CCAGCCAATCCTGCGCAG 61.515 66.667 30.52 30.52 0.00 5.18
326 327 2.335323 TGCGCAGGCATAAAACACA 58.665 47.368 5.66 0.00 46.21 3.72
327 328 0.887247 TGCGCAGGCATAAAACACAT 59.113 45.000 5.66 0.00 46.21 3.21
328 329 2.087646 TGCGCAGGCATAAAACACATA 58.912 42.857 5.66 0.00 46.21 2.29
329 330 2.687425 TGCGCAGGCATAAAACACATAT 59.313 40.909 5.66 0.00 46.21 1.78
330 331 3.044986 GCGCAGGCATAAAACACATATG 58.955 45.455 0.30 0.00 39.62 1.78
339 340 5.755813 CATAAAACACATATGCTCTCAGGC 58.244 41.667 1.58 0.00 0.00 4.85
340 341 3.641434 AAACACATATGCTCTCAGGCT 57.359 42.857 1.58 0.00 0.00 4.58
341 342 2.906691 ACACATATGCTCTCAGGCTC 57.093 50.000 1.58 0.00 0.00 4.70
342 343 1.068281 ACACATATGCTCTCAGGCTCG 59.932 52.381 1.58 0.00 0.00 5.03
343 344 1.068281 CACATATGCTCTCAGGCTCGT 59.932 52.381 1.58 0.00 0.00 4.18
344 345 1.759445 ACATATGCTCTCAGGCTCGTT 59.241 47.619 1.58 0.00 0.00 3.85
345 346 2.223923 ACATATGCTCTCAGGCTCGTTC 60.224 50.000 1.58 0.00 0.00 3.95
346 347 0.747255 TATGCTCTCAGGCTCGTTCC 59.253 55.000 0.00 0.00 0.00 3.62
347 348 1.260538 ATGCTCTCAGGCTCGTTCCA 61.261 55.000 0.00 0.00 0.00 3.53
348 349 1.153667 GCTCTCAGGCTCGTTCCAG 60.154 63.158 0.00 0.00 0.00 3.86
349 350 1.515020 CTCTCAGGCTCGTTCCAGG 59.485 63.158 0.00 0.00 0.00 4.45
350 351 2.125350 CTCAGGCTCGTTCCAGGC 60.125 66.667 0.00 0.00 39.29 4.85
351 352 2.922503 TCAGGCTCGTTCCAGGCA 60.923 61.111 0.00 0.00 41.49 4.75
352 353 2.249413 CTCAGGCTCGTTCCAGGCAT 62.249 60.000 0.00 0.00 41.49 4.40
353 354 1.377725 CAGGCTCGTTCCAGGCATT 60.378 57.895 0.00 0.00 41.49 3.56
354 355 1.377725 AGGCTCGTTCCAGGCATTG 60.378 57.895 0.00 0.00 41.49 2.82
355 356 1.377202 GGCTCGTTCCAGGCATTGA 60.377 57.895 0.00 0.00 38.83 2.57
356 357 1.648467 GGCTCGTTCCAGGCATTGAC 61.648 60.000 0.00 0.00 38.83 3.18
357 358 0.674895 GCTCGTTCCAGGCATTGACT 60.675 55.000 0.00 0.00 0.00 3.41
358 359 1.813513 CTCGTTCCAGGCATTGACTT 58.186 50.000 0.00 0.00 0.00 3.01
359 360 2.154462 CTCGTTCCAGGCATTGACTTT 58.846 47.619 0.00 0.00 0.00 2.66
360 361 2.554032 CTCGTTCCAGGCATTGACTTTT 59.446 45.455 0.00 0.00 0.00 2.27
361 362 2.955660 TCGTTCCAGGCATTGACTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
383 384 3.127533 GCACGATGGCCAGGACAC 61.128 66.667 13.05 0.00 0.00 3.67
384 385 2.347114 CACGATGGCCAGGACACA 59.653 61.111 13.05 0.00 0.00 3.72
385 386 1.302431 CACGATGGCCAGGACACAA 60.302 57.895 13.05 0.00 0.00 3.33
386 387 0.888736 CACGATGGCCAGGACACAAA 60.889 55.000 13.05 0.00 0.00 2.83
387 388 0.889186 ACGATGGCCAGGACACAAAC 60.889 55.000 13.05 0.00 0.00 2.93
388 389 1.586154 CGATGGCCAGGACACAAACC 61.586 60.000 13.05 0.00 0.00 3.27
389 390 0.539438 GATGGCCAGGACACAAACCA 60.539 55.000 13.05 0.00 0.00 3.67
390 391 0.105760 ATGGCCAGGACACAAACCAA 60.106 50.000 13.05 0.00 0.00 3.67
391 392 0.324738 TGGCCAGGACACAAACCAAA 60.325 50.000 0.00 0.00 0.00 3.28
392 393 0.104120 GGCCAGGACACAAACCAAAC 59.896 55.000 0.00 0.00 0.00 2.93
393 394 0.820871 GCCAGGACACAAACCAAACA 59.179 50.000 0.00 0.00 0.00 2.83
394 395 1.412343 GCCAGGACACAAACCAAACAT 59.588 47.619 0.00 0.00 0.00 2.71
395 396 2.802774 GCCAGGACACAAACCAAACATG 60.803 50.000 0.00 0.00 0.00 3.21
396 397 2.472816 CAGGACACAAACCAAACATGC 58.527 47.619 0.00 0.00 0.00 4.06
397 398 1.412343 AGGACACAAACCAAACATGCC 59.588 47.619 0.00 0.00 0.00 4.40
398 399 1.540146 GGACACAAACCAAACATGCCC 60.540 52.381 0.00 0.00 0.00 5.36
399 400 1.412343 GACACAAACCAAACATGCCCT 59.588 47.619 0.00 0.00 0.00 5.19
400 401 1.836802 ACACAAACCAAACATGCCCTT 59.163 42.857 0.00 0.00 0.00 3.95
401 402 3.034635 ACACAAACCAAACATGCCCTTA 58.965 40.909 0.00 0.00 0.00 2.69
402 403 3.452627 ACACAAACCAAACATGCCCTTAA 59.547 39.130 0.00 0.00 0.00 1.85
403 404 4.102367 ACACAAACCAAACATGCCCTTAAT 59.898 37.500 0.00 0.00 0.00 1.40
404 405 5.062528 CACAAACCAAACATGCCCTTAATT 58.937 37.500 0.00 0.00 0.00 1.40
405 406 5.049543 CACAAACCAAACATGCCCTTAATTG 60.050 40.000 0.00 0.00 0.00 2.32
406 407 4.972751 AACCAAACATGCCCTTAATTGT 57.027 36.364 0.00 0.00 0.00 2.71
407 408 4.535526 ACCAAACATGCCCTTAATTGTC 57.464 40.909 0.00 0.00 0.00 3.18
408 409 3.260632 ACCAAACATGCCCTTAATTGTCC 59.739 43.478 0.00 0.00 0.00 4.02
409 410 3.369366 CCAAACATGCCCTTAATTGTCCC 60.369 47.826 0.00 0.00 0.00 4.46
410 411 2.159179 ACATGCCCTTAATTGTCCCC 57.841 50.000 0.00 0.00 0.00 4.81
411 412 1.342975 ACATGCCCTTAATTGTCCCCC 60.343 52.381 0.00 0.00 0.00 5.40
435 436 6.876257 CCCCTATATGTATTCTTGAGCTTGTC 59.124 42.308 0.00 0.00 0.00 3.18
465 466 2.367947 ACCCTCCTCCAATTCTTCCT 57.632 50.000 0.00 0.00 0.00 3.36
495 496 5.696724 CGCTTCTTTTTGACCTCTCTTTCTA 59.303 40.000 0.00 0.00 0.00 2.10
568 569 4.284490 GGTATCATGCATTCACTCCCTCTA 59.716 45.833 0.00 0.00 0.00 2.43
705 710 8.420222 TGAATAATGACCAATGAGTGTTTTGTT 58.580 29.630 0.00 0.00 0.00 2.83
746 751 7.617041 AGAAATCTTACCATAGTTTGAGTGC 57.383 36.000 0.00 0.00 0.00 4.40
770 776 6.808704 GCATGGAAAGTTTCTCCAAAATAGAC 59.191 38.462 15.05 0.00 45.96 2.59
821 859 9.807649 AAAATCTAGTCATGCAAATCCAATTAC 57.192 29.630 0.00 0.00 0.00 1.89
868 908 6.378564 TGAATCAAAGGGGCGTATTCATAAAA 59.621 34.615 0.00 0.00 32.99 1.52
869 909 6.783708 ATCAAAGGGGCGTATTCATAAAAA 57.216 33.333 0.00 0.00 0.00 1.94
898 940 1.904287 TTTTCACAAGTGGGGGATCG 58.096 50.000 0.00 0.00 0.00 3.69
899 941 0.608035 TTTCACAAGTGGGGGATCGC 60.608 55.000 0.06 0.06 0.00 4.58
918 972 0.322997 CAAAATACGGGGCCAGGTCA 60.323 55.000 4.39 0.00 0.00 4.02
930 984 3.325753 AGGTCACAGCCTGAGCCC 61.326 66.667 0.00 0.00 46.99 5.19
1261 1318 1.743996 GATGGTTTCCTCCTGCAGAC 58.256 55.000 17.39 3.55 0.00 3.51
1312 1369 3.075641 GAGGACACCGAGGACCCC 61.076 72.222 0.00 0.00 0.00 4.95
1359 1416 2.356069 GCCTTTCCTTTCTATCGCCTTG 59.644 50.000 0.00 0.00 0.00 3.61
1360 1417 2.356069 CCTTTCCTTTCTATCGCCTTGC 59.644 50.000 0.00 0.00 0.00 4.01
1397 1454 4.832266 TGGCTTGTGGTGATGAGTTTTAAT 59.168 37.500 0.00 0.00 0.00 1.40
1399 1456 6.491745 TGGCTTGTGGTGATGAGTTTTAATTA 59.508 34.615 0.00 0.00 0.00 1.40
1427 1484 1.524621 CGATCTGCATCCGGCCTTT 60.525 57.895 0.00 0.00 43.89 3.11
1440 1497 1.887707 GCCTTTACCGGGATGCGAG 60.888 63.158 6.32 0.00 0.00 5.03
1462 1519 1.294659 CCTCTTGCGCTTGGACAGTC 61.295 60.000 9.73 0.00 0.00 3.51
1463 1520 1.621301 CTCTTGCGCTTGGACAGTCG 61.621 60.000 9.73 0.00 0.00 4.18
1464 1521 1.664649 CTTGCGCTTGGACAGTCGA 60.665 57.895 9.73 0.00 0.00 4.20
1465 1522 1.005037 TTGCGCTTGGACAGTCGAT 60.005 52.632 9.73 0.00 0.00 3.59
1466 1523 0.602638 TTGCGCTTGGACAGTCGATT 60.603 50.000 9.73 0.00 0.00 3.34
1467 1524 1.291184 TGCGCTTGGACAGTCGATTG 61.291 55.000 9.73 6.35 0.00 2.67
1468 1525 1.014044 GCGCTTGGACAGTCGATTGA 61.014 55.000 15.52 0.00 0.00 2.57
1469 1526 1.645034 CGCTTGGACAGTCGATTGAT 58.355 50.000 15.52 0.00 0.00 2.57
1470 1527 1.325640 CGCTTGGACAGTCGATTGATG 59.674 52.381 15.52 1.72 0.00 3.07
1471 1528 1.667724 GCTTGGACAGTCGATTGATGG 59.332 52.381 15.52 1.62 0.00 3.51
1472 1529 2.936993 GCTTGGACAGTCGATTGATGGT 60.937 50.000 15.52 0.00 0.00 3.55
1473 1530 2.385013 TGGACAGTCGATTGATGGTG 57.615 50.000 15.52 0.00 0.00 4.17
1474 1531 1.623311 TGGACAGTCGATTGATGGTGT 59.377 47.619 15.52 0.00 0.00 4.16
1475 1532 2.038426 TGGACAGTCGATTGATGGTGTT 59.962 45.455 15.52 0.00 0.00 3.32
1476 1533 2.673368 GGACAGTCGATTGATGGTGTTC 59.327 50.000 15.52 0.00 0.00 3.18
1477 1534 3.589988 GACAGTCGATTGATGGTGTTCT 58.410 45.455 15.52 0.00 0.00 3.01
1478 1535 4.381612 GGACAGTCGATTGATGGTGTTCTA 60.382 45.833 15.52 0.00 0.00 2.10
1479 1536 4.748892 ACAGTCGATTGATGGTGTTCTAG 58.251 43.478 15.52 0.00 0.00 2.43
1480 1537 4.115516 CAGTCGATTGATGGTGTTCTAGG 58.884 47.826 0.86 0.00 0.00 3.02
1481 1538 2.866762 GTCGATTGATGGTGTTCTAGGC 59.133 50.000 0.00 0.00 0.00 3.93
1520 1597 0.106335 CAGAGCTCCCAGATTGCGAT 59.894 55.000 10.93 0.00 0.00 4.58
1525 1602 0.661552 CTCCCAGATTGCGATTGCTG 59.338 55.000 6.47 0.00 43.34 4.41
1539 1617 2.430546 TTGCTGGGTTAATTTGTGCG 57.569 45.000 0.00 0.00 0.00 5.34
1549 1627 5.180680 GGGTTAATTTGTGCGACTAAACTCT 59.819 40.000 0.00 0.00 0.00 3.24
1550 1628 6.077838 GGTTAATTTGTGCGACTAAACTCTG 58.922 40.000 0.00 0.00 0.00 3.35
1561 1641 4.616143 CGACTAAACTCTGCTAGAACTGCA 60.616 45.833 0.00 0.00 38.81 4.41
1569 1649 2.615912 CTGCTAGAACTGCAATTAGCCC 59.384 50.000 12.88 0.00 44.83 5.19
1570 1650 2.026356 TGCTAGAACTGCAATTAGCCCA 60.026 45.455 12.88 0.00 44.83 5.36
1571 1651 3.217626 GCTAGAACTGCAATTAGCCCAT 58.782 45.455 0.00 0.00 44.83 4.00
1598 1678 2.810439 TCCCAAACAAAATGAAGGCG 57.190 45.000 0.00 0.00 0.00 5.52
1647 1727 3.248602 CGGCTGCTAGTTATGGAAATGTC 59.751 47.826 0.00 0.00 0.00 3.06
1777 1912 6.258947 GCATGATACTCCCTCTGTAACTTTTC 59.741 42.308 0.00 0.00 0.00 2.29
1857 1993 4.420168 CATTCAAAAACAAGTGACGTGGT 58.580 39.130 3.19 0.00 0.00 4.16
1861 1997 6.010294 TCAAAAACAAGTGACGTGGTTTTA 57.990 33.333 22.87 11.55 42.53 1.52
1885 2021 7.749539 ACTTGAAATTTGAACTAAAACCACG 57.250 32.000 0.00 0.00 0.00 4.94
1898 2034 7.324354 ACTAAAACCACGTCACTTATTTTGT 57.676 32.000 0.00 0.00 0.00 2.83
1904 2040 4.448395 CCACGTCACTTATTTTGTAACGGA 59.552 41.667 0.00 0.00 33.26 4.69
1964 2100 5.899299 AGAGCCACATCATAAAAATTCTGC 58.101 37.500 0.00 0.00 0.00 4.26
1965 2101 5.419788 AGAGCCACATCATAAAAATTCTGCA 59.580 36.000 0.00 0.00 0.00 4.41
2028 2164 9.793245 GATCGAATTATTTATCACTTGTAACCG 57.207 33.333 0.00 0.00 0.00 4.44
2073 2209 3.138884 TGGCTGTCTTATTGCACTCAA 57.861 42.857 0.00 0.00 36.51 3.02
2079 2215 5.335897 GCTGTCTTATTGCACTCAAATTGGA 60.336 40.000 0.00 0.00 35.56 3.53
2196 2332 9.638239 TGATTTCTGTTAGCAAATTTTCCATAC 57.362 29.630 0.00 0.00 0.00 2.39
2308 2476 6.990349 TCTTTACTCTTTGACGAAACTTGGAT 59.010 34.615 0.00 0.00 0.00 3.41
2311 2479 2.478894 TCTTTGACGAAACTTGGATCGC 59.521 45.455 0.00 0.00 42.61 4.58
2380 2551 5.902681 TGCTAGGCATAAGTAACACTGTAG 58.097 41.667 0.00 0.00 31.71 2.74
2438 2609 3.694072 TGCTTTACACTGTTATGGCATCC 59.306 43.478 1.65 0.00 0.00 3.51
2446 2617 6.426587 ACACTGTTATGGCATCCTTTAGAAT 58.573 36.000 1.65 0.00 0.00 2.40
2475 2647 9.444600 TGAATGTAAAACCTTTCCTATCTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
2499 2671 5.186198 GGTCAATACTCAACAGCTGGTATT 58.814 41.667 19.93 17.51 34.42 1.89
2672 2850 4.177165 TGGTACAACGATACATCAACGT 57.823 40.909 0.00 0.00 41.97 3.99
2684 2862 6.250739 CGATACATCAACGTAGCATACATACC 59.749 42.308 0.00 0.00 43.24 2.73
2729 2914 4.033990 TCTTGTGCTCGTAGTGATCATC 57.966 45.455 0.00 0.00 0.00 2.92
2787 2980 8.764524 ATATGAAGTCTATTAGTTTCGATGCC 57.235 34.615 0.00 0.00 0.00 4.40
2789 2982 6.042777 TGAAGTCTATTAGTTTCGATGCCTG 58.957 40.000 0.00 0.00 0.00 4.85
2953 3153 4.436998 GGAGCTGCACGGCGTACT 62.437 66.667 14.22 8.08 37.29 2.73
2954 3154 2.881352 GAGCTGCACGGCGTACTC 60.881 66.667 14.22 13.62 37.29 2.59
2955 3155 3.343788 GAGCTGCACGGCGTACTCT 62.344 63.158 14.22 8.82 37.29 3.24
2956 3156 3.181967 GCTGCACGGCGTACTCTG 61.182 66.667 14.22 10.15 0.00 3.35
2957 3157 2.507102 CTGCACGGCGTACTCTGG 60.507 66.667 14.22 0.00 0.00 3.86
2958 3158 4.735132 TGCACGGCGTACTCTGGC 62.735 66.667 14.22 11.91 0.00 4.85
3019 3219 3.185246 AGTGTCTCTGGTTGAACTGTG 57.815 47.619 0.00 0.00 0.00 3.66
3109 3323 3.589288 AGCCTGTTCTTAATTCTGGAGGT 59.411 43.478 0.00 0.00 0.00 3.85
3112 3326 4.938226 CCTGTTCTTAATTCTGGAGGTGAC 59.062 45.833 0.00 0.00 0.00 3.67
3176 3390 6.643770 AGAACATTTGCTTGCTATTGTTTCTG 59.356 34.615 14.52 0.00 0.00 3.02
3225 3443 0.529378 GGCAGTTCAGCTTGGAATGG 59.471 55.000 0.00 0.00 34.17 3.16
3260 3478 6.471233 AGGCATTCTTAAATTAAAGGGCTC 57.529 37.500 0.00 0.00 0.00 4.70
3261 3479 5.957774 AGGCATTCTTAAATTAAAGGGCTCA 59.042 36.000 0.00 0.00 0.00 4.26
3312 3545 6.711645 GGTTTTGTAATGGTAAGGTCACAGTA 59.288 38.462 0.00 0.00 0.00 2.74
3364 3809 3.643159 ACTTCCCGAAAACTTTGATGC 57.357 42.857 0.00 0.00 0.00 3.91
3395 3840 3.559655 CACGGAAAAATATGGCGATCTCA 59.440 43.478 0.00 0.00 0.00 3.27
3454 3899 4.394920 CCTGTTAGAAACATAACGCCATGT 59.605 41.667 0.00 0.00 41.26 3.21
3504 3992 1.640149 TCCCCAAAGCATCTTCATGGA 59.360 47.619 0.00 0.00 32.82 3.41
3538 4026 7.406031 TCAGTAACCAACTAGACTCCATAAG 57.594 40.000 0.00 0.00 35.76 1.73
3602 4090 4.618227 GCATCCAAAACCTGATAACCACAC 60.618 45.833 0.00 0.00 0.00 3.82
3654 4142 9.765795 GAGACAGGTATAATACTATTTTGTGCT 57.234 33.333 0.00 0.00 0.00 4.40
3720 4209 7.959689 GCAGATTGCTTCTAATCTTCTGATA 57.040 36.000 0.00 0.00 43.08 2.15
3820 4311 2.299582 CCCATGCCATGTCAAAGACAAA 59.700 45.455 3.63 0.00 45.96 2.83
3821 4312 3.244146 CCCATGCCATGTCAAAGACAAAA 60.244 43.478 3.63 0.00 45.96 2.44
3860 4351 3.313791 TGCTCTGCTAACATATACCCCA 58.686 45.455 0.00 0.00 0.00 4.96
3886 4377 1.673665 CAACTGCTGGAGCTCCACC 60.674 63.158 32.00 25.37 42.01 4.61
4016 4507 7.553881 GCTTTTAGCTGGTATAAACAGATCA 57.446 36.000 9.29 0.00 38.45 2.92
4017 4508 7.634522 GCTTTTAGCTGGTATAAACAGATCAG 58.365 38.462 9.29 0.00 38.45 2.90
4018 4509 7.495934 GCTTTTAGCTGGTATAAACAGATCAGA 59.504 37.037 9.29 0.00 38.45 3.27
4019 4510 9.553064 CTTTTAGCTGGTATAAACAGATCAGAT 57.447 33.333 9.29 0.00 38.20 2.90
4041 4533 0.391597 ACACGGTCAGTTGGTTCGAT 59.608 50.000 0.00 0.00 0.00 3.59
4058 4550 6.017026 TGGTTCGATAAGTAAAACAATGCACA 60.017 34.615 0.00 0.00 0.00 4.57
4078 4570 4.151335 CACATCTACTTCTGTTGACTGTGC 59.849 45.833 0.00 0.00 34.61 4.57
4106 4598 5.701224 ACTTGGGAACAGGAAAATGAAGTA 58.299 37.500 0.00 0.00 44.54 2.24
4107 4599 6.314917 ACTTGGGAACAGGAAAATGAAGTAT 58.685 36.000 0.00 0.00 44.54 2.12
4175 4667 8.404000 CACAATTACTATAGTCAACCTCTACGT 58.596 37.037 9.12 0.00 0.00 3.57
4176 4668 9.618890 ACAATTACTATAGTCAACCTCTACGTA 57.381 33.333 9.12 0.00 0.00 3.57
4178 4670 8.845413 ATTACTATAGTCAACCTCTACGTAGG 57.155 38.462 22.01 12.76 42.82 3.18
4179 4671 5.062528 ACTATAGTCAACCTCTACGTAGGC 58.937 45.833 22.01 0.00 40.62 3.93
4180 4672 2.211250 AGTCAACCTCTACGTAGGCA 57.789 50.000 22.01 3.26 40.62 4.75
4181 4673 2.522185 AGTCAACCTCTACGTAGGCAA 58.478 47.619 22.01 2.50 40.62 4.52
4182 4674 2.230750 AGTCAACCTCTACGTAGGCAAC 59.769 50.000 22.01 11.67 40.62 4.17
4183 4675 2.029649 GTCAACCTCTACGTAGGCAACA 60.030 50.000 22.01 1.74 40.62 3.33
4184 4676 2.829720 TCAACCTCTACGTAGGCAACAT 59.170 45.455 22.01 2.18 40.62 2.71
4185 4677 4.018490 TCAACCTCTACGTAGGCAACATA 58.982 43.478 22.01 0.26 40.62 2.29
4186 4678 4.097437 TCAACCTCTACGTAGGCAACATAG 59.903 45.833 22.01 10.06 40.62 2.23
4187 4679 2.361438 ACCTCTACGTAGGCAACATAGC 59.639 50.000 22.01 0.00 40.62 2.97
4198 4690 1.933853 GCAACATAGCCAACCTCTACG 59.066 52.381 0.00 0.00 0.00 3.51
4211 4703 2.141535 CTCTACGGAGGCAACATAGC 57.858 55.000 0.00 0.00 41.41 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.680156 GCACCAAATCGCCAGGAA 58.320 55.556 0.00 0.00 0.00 3.36
8 9 0.388520 GGTTTCAGGCACCAAATCGC 60.389 55.000 0.00 0.00 34.04 4.58
10 11 1.337167 GCAGGTTTCAGGCACCAAATC 60.337 52.381 0.00 0.00 36.67 2.17
12 13 1.398958 GGCAGGTTTCAGGCACCAAA 61.399 55.000 0.00 0.00 36.67 3.28
13 14 1.832167 GGCAGGTTTCAGGCACCAA 60.832 57.895 0.00 0.00 36.67 3.67
14 15 2.203480 GGCAGGTTTCAGGCACCA 60.203 61.111 0.00 0.00 36.67 4.17
15 16 2.116125 AGGCAGGTTTCAGGCACC 59.884 61.111 0.00 0.00 34.06 5.01
16 17 1.228245 TCAGGCAGGTTTCAGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
17 18 1.073722 CTCAGGCAGGTTTCAGGCA 59.926 57.895 0.00 0.00 0.00 4.75
18 19 0.957888 GTCTCAGGCAGGTTTCAGGC 60.958 60.000 0.00 0.00 0.00 4.85
19 20 0.397941 TGTCTCAGGCAGGTTTCAGG 59.602 55.000 0.00 0.00 0.00 3.86
20 21 2.082231 CATGTCTCAGGCAGGTTTCAG 58.918 52.381 0.00 0.00 0.00 3.02
21 22 1.421268 ACATGTCTCAGGCAGGTTTCA 59.579 47.619 0.00 0.00 0.00 2.69
22 23 2.191128 ACATGTCTCAGGCAGGTTTC 57.809 50.000 0.00 0.00 0.00 2.78
23 24 2.624838 CAAACATGTCTCAGGCAGGTTT 59.375 45.455 16.09 16.09 46.98 3.27
24 25 2.233271 CAAACATGTCTCAGGCAGGTT 58.767 47.619 2.80 2.80 41.68 3.50
25 26 1.546323 CCAAACATGTCTCAGGCAGGT 60.546 52.381 0.00 0.00 31.87 4.00
26 27 1.171308 CCAAACATGTCTCAGGCAGG 58.829 55.000 0.00 0.00 0.00 4.85
27 28 2.189594 TCCAAACATGTCTCAGGCAG 57.810 50.000 0.00 0.00 0.00 4.85
28 29 2.885135 ATCCAAACATGTCTCAGGCA 57.115 45.000 0.00 0.00 0.00 4.75
29 30 2.615912 GCTATCCAAACATGTCTCAGGC 59.384 50.000 0.00 0.00 0.00 4.85
30 31 2.868583 CGCTATCCAAACATGTCTCAGG 59.131 50.000 0.00 0.00 0.00 3.86
31 32 3.525537 ACGCTATCCAAACATGTCTCAG 58.474 45.455 0.00 0.00 0.00 3.35
32 33 3.521560 GACGCTATCCAAACATGTCTCA 58.478 45.455 0.00 0.00 0.00 3.27
45 46 1.067669 TCACATGCTCAGGACGCTATC 59.932 52.381 0.00 0.00 0.00 2.08
46 47 1.114627 TCACATGCTCAGGACGCTAT 58.885 50.000 0.00 0.00 0.00 2.97
47 48 0.173481 GTCACATGCTCAGGACGCTA 59.827 55.000 0.00 0.00 0.00 4.26
48 49 1.079543 GTCACATGCTCAGGACGCT 60.080 57.895 0.00 0.00 0.00 5.07
49 50 1.357258 CTGTCACATGCTCAGGACGC 61.357 60.000 0.00 0.00 33.04 5.19
50 51 0.244721 TCTGTCACATGCTCAGGACG 59.755 55.000 10.86 0.00 33.04 4.79
51 52 2.462456 TTCTGTCACATGCTCAGGAC 57.538 50.000 10.86 4.52 0.00 3.85
52 53 2.938314 GCATTCTGTCACATGCTCAGGA 60.938 50.000 10.86 4.73 42.25 3.86
53 54 1.400846 GCATTCTGTCACATGCTCAGG 59.599 52.381 10.86 0.00 42.25 3.86
54 55 2.826979 GCATTCTGTCACATGCTCAG 57.173 50.000 0.00 0.00 42.25 3.35
58 59 1.734707 GCCAAGCATTCTGTCACATGC 60.735 52.381 0.00 4.61 45.30 4.06
59 60 1.135199 GGCCAAGCATTCTGTCACATG 60.135 52.381 0.00 0.00 0.00 3.21
60 61 1.180029 GGCCAAGCATTCTGTCACAT 58.820 50.000 0.00 0.00 0.00 3.21
61 62 0.111061 AGGCCAAGCATTCTGTCACA 59.889 50.000 5.01 0.00 0.00 3.58
62 63 0.524862 CAGGCCAAGCATTCTGTCAC 59.475 55.000 5.01 0.00 0.00 3.67
63 64 0.609957 CCAGGCCAAGCATTCTGTCA 60.610 55.000 5.01 0.00 0.00 3.58
64 65 0.322816 TCCAGGCCAAGCATTCTGTC 60.323 55.000 5.01 0.00 0.00 3.51
65 66 0.112995 TTCCAGGCCAAGCATTCTGT 59.887 50.000 5.01 0.00 0.00 3.41
66 67 1.259609 TTTCCAGGCCAAGCATTCTG 58.740 50.000 5.01 0.00 0.00 3.02
67 68 1.897802 CTTTTCCAGGCCAAGCATTCT 59.102 47.619 5.01 0.00 0.00 2.40
68 69 1.673923 GCTTTTCCAGGCCAAGCATTC 60.674 52.381 17.44 0.00 42.18 2.67
69 70 0.322648 GCTTTTCCAGGCCAAGCATT 59.677 50.000 17.44 0.00 42.18 3.56
70 71 1.547472 GGCTTTTCCAGGCCAAGCAT 61.547 55.000 22.16 0.00 46.84 3.79
71 72 2.209315 GGCTTTTCCAGGCCAAGCA 61.209 57.895 22.16 0.00 46.84 3.91
72 73 2.659016 GGCTTTTCCAGGCCAAGC 59.341 61.111 14.76 14.76 46.84 4.01
78 79 0.178992 TGGTGACAGGCTTTTCCAGG 60.179 55.000 0.00 0.00 37.29 4.45
79 80 3.419793 TGGTGACAGGCTTTTCCAG 57.580 52.632 0.00 0.00 37.29 3.86
91 92 1.312815 GCCAGGCTAATGATGGTGAC 58.687 55.000 3.29 0.00 36.43 3.67
92 93 0.918258 TGCCAGGCTAATGATGGTGA 59.082 50.000 14.15 0.00 36.43 4.02
93 94 1.766494 TTGCCAGGCTAATGATGGTG 58.234 50.000 14.15 0.00 36.43 4.17
94 95 2.530460 TTTGCCAGGCTAATGATGGT 57.470 45.000 14.15 0.00 36.43 3.55
95 96 2.298163 GGATTTGCCAGGCTAATGATGG 59.702 50.000 23.90 0.00 34.57 3.51
96 97 2.960384 TGGATTTGCCAGGCTAATGATG 59.040 45.455 23.90 0.00 43.33 3.07
97 98 3.317455 TGGATTTGCCAGGCTAATGAT 57.683 42.857 23.90 2.86 43.33 2.45
98 99 2.824689 TGGATTTGCCAGGCTAATGA 57.175 45.000 23.90 8.95 43.33 2.57
107 108 1.907807 GTGGTGCCTGGATTTGCCA 60.908 57.895 0.00 0.00 46.96 4.92
108 109 2.649129 GGTGGTGCCTGGATTTGCC 61.649 63.158 0.00 0.00 37.10 4.52
109 110 1.259840 ATGGTGGTGCCTGGATTTGC 61.260 55.000 0.00 0.00 38.35 3.68
110 111 1.269012 AATGGTGGTGCCTGGATTTG 58.731 50.000 0.00 0.00 38.35 2.32
111 112 2.738743 CTAATGGTGGTGCCTGGATTT 58.261 47.619 0.00 0.00 38.35 2.17
112 113 1.686115 GCTAATGGTGGTGCCTGGATT 60.686 52.381 0.00 0.00 38.35 3.01
113 114 0.106519 GCTAATGGTGGTGCCTGGAT 60.107 55.000 0.00 0.00 38.35 3.41
114 115 1.302949 GCTAATGGTGGTGCCTGGA 59.697 57.895 0.00 0.00 38.35 3.86
115 116 0.396139 ATGCTAATGGTGGTGCCTGG 60.396 55.000 0.00 0.00 38.35 4.45
116 117 0.742505 CATGCTAATGGTGGTGCCTG 59.257 55.000 0.00 0.00 38.35 4.85
117 118 3.196040 CATGCTAATGGTGGTGCCT 57.804 52.632 0.00 0.00 38.35 4.75
126 127 2.558286 CGCCTGGCCCATGCTAATG 61.558 63.158 14.12 0.00 37.74 1.90
127 128 2.203394 CGCCTGGCCCATGCTAAT 60.203 61.111 14.12 0.00 37.74 1.73
128 129 2.977718 TTCGCCTGGCCCATGCTAA 61.978 57.895 14.12 1.61 37.74 3.09
129 130 3.407083 TTCGCCTGGCCCATGCTA 61.407 61.111 14.12 0.00 37.74 3.49
132 133 4.776322 TCGTTCGCCTGGCCCATG 62.776 66.667 14.12 5.36 0.00 3.66
133 134 1.978455 TAATCGTTCGCCTGGCCCAT 61.978 55.000 14.12 0.00 0.00 4.00
134 135 2.661066 TAATCGTTCGCCTGGCCCA 61.661 57.895 14.12 0.00 0.00 5.36
135 136 2.178235 GTAATCGTTCGCCTGGCCC 61.178 63.158 14.12 0.00 0.00 5.80
136 137 1.448893 TGTAATCGTTCGCCTGGCC 60.449 57.895 14.12 0.00 0.00 5.36
137 138 1.017177 TGTGTAATCGTTCGCCTGGC 61.017 55.000 9.11 9.11 0.00 4.85
138 139 1.327460 CATGTGTAATCGTTCGCCTGG 59.673 52.381 0.00 0.00 0.00 4.45
139 140 1.267532 GCATGTGTAATCGTTCGCCTG 60.268 52.381 0.00 0.00 0.00 4.85
140 141 1.006832 GCATGTGTAATCGTTCGCCT 58.993 50.000 0.00 0.00 0.00 5.52
141 142 0.027586 GGCATGTGTAATCGTTCGCC 59.972 55.000 0.00 0.00 0.00 5.54
142 143 1.006832 AGGCATGTGTAATCGTTCGC 58.993 50.000 0.00 0.00 0.00 4.70
143 144 1.327460 CCAGGCATGTGTAATCGTTCG 59.673 52.381 0.00 0.00 0.00 3.95
144 145 1.064060 GCCAGGCATGTGTAATCGTTC 59.936 52.381 6.55 0.00 0.00 3.95
145 146 1.094785 GCCAGGCATGTGTAATCGTT 58.905 50.000 6.55 0.00 0.00 3.85
146 147 0.035534 TGCCAGGCATGTGTAATCGT 60.036 50.000 11.22 0.00 31.71 3.73
147 148 0.378257 GTGCCAGGCATGTGTAATCG 59.622 55.000 19.75 0.00 41.91 3.34
148 149 0.378257 CGTGCCAGGCATGTGTAATC 59.622 55.000 23.98 4.95 41.91 1.75
149 150 2.481212 CGTGCCAGGCATGTGTAAT 58.519 52.632 23.98 0.00 41.91 1.89
150 151 3.979789 CGTGCCAGGCATGTGTAA 58.020 55.556 23.98 0.00 41.91 2.41
163 164 1.234615 ATGTACAACCAGGCACGTGC 61.235 55.000 32.15 32.15 41.14 5.34
164 165 1.234821 AATGTACAACCAGGCACGTG 58.765 50.000 12.28 12.28 0.00 4.49
165 166 2.038033 ACTAATGTACAACCAGGCACGT 59.962 45.455 0.00 0.00 0.00 4.49
166 167 2.695359 ACTAATGTACAACCAGGCACG 58.305 47.619 0.00 0.00 0.00 5.34
187 188 8.739972 CCCACTGAACTAGCAAAATATTTTAGT 58.260 33.333 12.98 10.41 0.00 2.24
188 189 7.702348 GCCCACTGAACTAGCAAAATATTTTAG 59.298 37.037 12.98 9.81 0.00 1.85
189 190 7.396055 AGCCCACTGAACTAGCAAAATATTTTA 59.604 33.333 12.98 0.00 0.00 1.52
190 191 6.211384 AGCCCACTGAACTAGCAAAATATTTT 59.789 34.615 7.64 7.64 0.00 1.82
191 192 5.716703 AGCCCACTGAACTAGCAAAATATTT 59.283 36.000 0.00 0.00 0.00 1.40
192 193 5.264395 AGCCCACTGAACTAGCAAAATATT 58.736 37.500 0.00 0.00 0.00 1.28
193 194 4.860022 AGCCCACTGAACTAGCAAAATAT 58.140 39.130 0.00 0.00 0.00 1.28
194 195 4.261801 GAGCCCACTGAACTAGCAAAATA 58.738 43.478 0.00 0.00 0.00 1.40
195 196 3.084786 GAGCCCACTGAACTAGCAAAAT 58.915 45.455 0.00 0.00 0.00 1.82
196 197 2.504367 GAGCCCACTGAACTAGCAAAA 58.496 47.619 0.00 0.00 0.00 2.44
197 198 1.271379 GGAGCCCACTGAACTAGCAAA 60.271 52.381 0.00 0.00 0.00 3.68
198 199 0.324943 GGAGCCCACTGAACTAGCAA 59.675 55.000 0.00 0.00 0.00 3.91
199 200 0.835971 TGGAGCCCACTGAACTAGCA 60.836 55.000 0.00 0.00 0.00 3.49
200 201 1.983224 TGGAGCCCACTGAACTAGC 59.017 57.895 0.00 0.00 0.00 3.42
210 211 1.369692 CGTACAGTTGTGGAGCCCA 59.630 57.895 0.00 0.00 0.00 5.36
211 212 2.033194 GCGTACAGTTGTGGAGCCC 61.033 63.158 0.00 0.00 0.00 5.19
212 213 0.673644 ATGCGTACAGTTGTGGAGCC 60.674 55.000 0.00 0.00 0.00 4.70
213 214 1.128692 GAATGCGTACAGTTGTGGAGC 59.871 52.381 0.00 0.00 0.00 4.70
214 215 2.688507 AGAATGCGTACAGTTGTGGAG 58.311 47.619 0.00 0.00 0.00 3.86
215 216 2.805671 CAAGAATGCGTACAGTTGTGGA 59.194 45.455 0.00 0.00 0.00 4.02
216 217 2.805671 TCAAGAATGCGTACAGTTGTGG 59.194 45.455 0.00 0.00 0.00 4.17
217 218 3.363970 GGTCAAGAATGCGTACAGTTGTG 60.364 47.826 0.00 0.00 0.00 3.33
218 219 2.806244 GGTCAAGAATGCGTACAGTTGT 59.194 45.455 0.00 0.00 0.00 3.32
219 220 2.159627 GGGTCAAGAATGCGTACAGTTG 59.840 50.000 0.00 0.00 0.00 3.16
220 221 2.038557 AGGGTCAAGAATGCGTACAGTT 59.961 45.455 0.00 0.00 0.00 3.16
221 222 1.623811 AGGGTCAAGAATGCGTACAGT 59.376 47.619 0.00 0.00 0.00 3.55
222 223 2.386661 AGGGTCAAGAATGCGTACAG 57.613 50.000 0.00 0.00 0.00 2.74
223 224 5.601583 TTATAGGGTCAAGAATGCGTACA 57.398 39.130 0.00 0.00 0.00 2.90
224 225 6.913873 TTTTATAGGGTCAAGAATGCGTAC 57.086 37.500 0.00 0.00 0.00 3.67
225 226 9.787435 AATATTTTATAGGGTCAAGAATGCGTA 57.213 29.630 0.00 0.00 0.00 4.42
226 227 8.691661 AATATTTTATAGGGTCAAGAATGCGT 57.308 30.769 0.00 0.00 0.00 5.24
227 228 9.003658 AGAATATTTTATAGGGTCAAGAATGCG 57.996 33.333 0.00 0.00 0.00 4.73
244 245 9.591792 GCCTCAAAAAGCATTAGAGAATATTTT 57.408 29.630 5.84 0.00 30.25 1.82
245 246 8.200120 GGCCTCAAAAAGCATTAGAGAATATTT 58.800 33.333 0.00 0.00 0.00 1.40
246 247 7.342799 TGGCCTCAAAAAGCATTAGAGAATATT 59.657 33.333 3.32 0.00 0.00 1.28
247 248 6.835488 TGGCCTCAAAAAGCATTAGAGAATAT 59.165 34.615 3.32 0.00 0.00 1.28
248 249 6.186957 TGGCCTCAAAAAGCATTAGAGAATA 58.813 36.000 3.32 0.00 0.00 1.75
249 250 5.018809 TGGCCTCAAAAAGCATTAGAGAAT 58.981 37.500 3.32 0.00 0.00 2.40
250 251 4.406456 TGGCCTCAAAAAGCATTAGAGAA 58.594 39.130 3.32 0.00 0.00 2.87
251 252 4.032960 TGGCCTCAAAAAGCATTAGAGA 57.967 40.909 3.32 0.00 0.00 3.10
252 253 4.381292 CCTTGGCCTCAAAAAGCATTAGAG 60.381 45.833 3.32 0.00 31.77 2.43
253 254 3.511146 CCTTGGCCTCAAAAAGCATTAGA 59.489 43.478 3.32 0.00 31.77 2.10
254 255 3.853475 CCTTGGCCTCAAAAAGCATTAG 58.147 45.455 3.32 0.00 31.77 1.73
255 256 2.028203 GCCTTGGCCTCAAAAAGCATTA 60.028 45.455 3.32 0.00 31.77 1.90
256 257 1.271001 GCCTTGGCCTCAAAAAGCATT 60.271 47.619 3.32 0.00 31.77 3.56
257 258 0.322648 GCCTTGGCCTCAAAAAGCAT 59.677 50.000 3.32 0.00 31.77 3.79
258 259 1.047596 TGCCTTGGCCTCAAAAAGCA 61.048 50.000 3.32 0.00 33.76 3.91
259 260 0.322648 ATGCCTTGGCCTCAAAAAGC 59.677 50.000 3.32 0.00 31.77 3.51
260 261 1.619827 TGATGCCTTGGCCTCAAAAAG 59.380 47.619 15.41 0.00 31.77 2.27
261 262 1.714541 TGATGCCTTGGCCTCAAAAA 58.285 45.000 15.41 0.00 31.77 1.94
262 263 1.344114 GTTGATGCCTTGGCCTCAAAA 59.656 47.619 25.85 9.68 31.77 2.44
263 264 0.968405 GTTGATGCCTTGGCCTCAAA 59.032 50.000 25.85 12.93 31.77 2.69
264 265 0.899717 GGTTGATGCCTTGGCCTCAA 60.900 55.000 22.27 22.27 0.00 3.02
265 266 1.304381 GGTTGATGCCTTGGCCTCA 60.304 57.895 14.11 14.11 0.00 3.86
266 267 0.899717 TTGGTTGATGCCTTGGCCTC 60.900 55.000 3.32 9.43 0.00 4.70
267 268 0.471591 TTTGGTTGATGCCTTGGCCT 60.472 50.000 3.32 0.00 0.00 5.19
268 269 0.320683 GTTTGGTTGATGCCTTGGCC 60.321 55.000 9.35 0.00 0.00 5.36
269 270 0.392336 TGTTTGGTTGATGCCTTGGC 59.608 50.000 4.43 4.43 0.00 4.52
270 271 2.690786 CATGTTTGGTTGATGCCTTGG 58.309 47.619 0.00 0.00 0.00 3.61
271 272 2.070783 GCATGTTTGGTTGATGCCTTG 58.929 47.619 0.00 0.00 37.17 3.61
272 273 1.972795 AGCATGTTTGGTTGATGCCTT 59.027 42.857 0.00 0.00 42.93 4.35
273 274 1.636148 AGCATGTTTGGTTGATGCCT 58.364 45.000 0.00 0.00 42.93 4.75
274 275 2.460757 AAGCATGTTTGGTTGATGCC 57.539 45.000 0.00 0.00 42.93 4.40
280 281 1.688197 CTGGGACAAGCATGTTTGGTT 59.312 47.619 23.82 6.20 44.12 3.67
281 282 1.331214 CTGGGACAAGCATGTTTGGT 58.669 50.000 23.82 11.20 40.74 3.67
282 283 0.037975 GCTGGGACAAGCATGTTTGG 60.038 55.000 23.82 8.78 40.74 3.28
283 284 0.037975 GGCTGGGACAAGCATGTTTG 60.038 55.000 19.42 19.42 40.74 2.93
284 285 0.469705 TGGCTGGGACAAGCATGTTT 60.470 50.000 0.00 0.00 40.74 2.83
285 286 0.469705 TTGGCTGGGACAAGCATGTT 60.470 50.000 0.00 0.00 40.74 2.71
286 287 0.251922 ATTGGCTGGGACAAGCATGT 60.252 50.000 0.00 0.00 44.25 3.21
287 288 0.458669 GATTGGCTGGGACAAGCATG 59.541 55.000 0.52 0.00 36.89 4.06
288 289 0.685458 GGATTGGCTGGGACAAGCAT 60.685 55.000 3.82 0.00 38.89 3.79
289 290 1.304381 GGATTGGCTGGGACAAGCA 60.304 57.895 3.82 0.00 38.89 3.91
290 291 1.000396 AGGATTGGCTGGGACAAGC 60.000 57.895 0.00 0.00 38.70 4.01
291 292 1.318158 GCAGGATTGGCTGGGACAAG 61.318 60.000 0.00 0.00 38.70 3.16
292 293 1.304381 GCAGGATTGGCTGGGACAA 60.304 57.895 0.00 0.00 38.70 3.18
293 294 2.356278 GCAGGATTGGCTGGGACA 59.644 61.111 0.00 0.00 0.00 4.02
294 295 2.825836 CGCAGGATTGGCTGGGAC 60.826 66.667 0.00 0.00 35.87 4.46
295 296 4.802051 GCGCAGGATTGGCTGGGA 62.802 66.667 0.30 0.00 35.87 4.37
297 298 3.515286 CTGCGCAGGATTGGCTGG 61.515 66.667 29.88 0.00 0.00 4.85
309 310 2.842208 TATGTGTTTTATGCCTGCGC 57.158 45.000 0.00 0.00 0.00 6.09
310 311 3.044986 GCATATGTGTTTTATGCCTGCG 58.955 45.455 4.29 0.00 43.92 5.18
316 317 5.530171 AGCCTGAGAGCATATGTGTTTTATG 59.470 40.000 4.29 0.00 34.23 1.90
317 318 5.688807 AGCCTGAGAGCATATGTGTTTTAT 58.311 37.500 4.29 0.00 34.23 1.40
318 319 5.102953 AGCCTGAGAGCATATGTGTTTTA 57.897 39.130 4.29 0.00 34.23 1.52
319 320 3.944015 GAGCCTGAGAGCATATGTGTTTT 59.056 43.478 4.29 0.00 34.23 2.43
320 321 3.539604 GAGCCTGAGAGCATATGTGTTT 58.460 45.455 4.29 0.00 34.23 2.83
321 322 2.482664 CGAGCCTGAGAGCATATGTGTT 60.483 50.000 4.29 0.00 34.23 3.32
322 323 1.068281 CGAGCCTGAGAGCATATGTGT 59.932 52.381 4.29 0.00 34.23 3.72
323 324 1.068281 ACGAGCCTGAGAGCATATGTG 59.932 52.381 4.29 0.00 34.23 3.21
324 325 1.407936 ACGAGCCTGAGAGCATATGT 58.592 50.000 4.29 0.00 34.23 2.29
325 326 2.402305 GAACGAGCCTGAGAGCATATG 58.598 52.381 0.00 0.00 34.23 1.78
326 327 1.342819 GGAACGAGCCTGAGAGCATAT 59.657 52.381 0.00 0.00 34.23 1.78
327 328 0.747255 GGAACGAGCCTGAGAGCATA 59.253 55.000 0.00 0.00 34.23 3.14
328 329 1.260538 TGGAACGAGCCTGAGAGCAT 61.261 55.000 0.00 0.00 34.23 3.79
329 330 1.881903 CTGGAACGAGCCTGAGAGCA 61.882 60.000 0.00 0.00 34.23 4.26
330 331 1.153667 CTGGAACGAGCCTGAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
331 332 1.515020 CCTGGAACGAGCCTGAGAG 59.485 63.158 0.00 0.00 0.00 3.20
332 333 2.650116 GCCTGGAACGAGCCTGAGA 61.650 63.158 0.00 0.00 0.00 3.27
333 334 2.125350 GCCTGGAACGAGCCTGAG 60.125 66.667 0.00 0.00 0.00 3.35
334 335 1.841302 AATGCCTGGAACGAGCCTGA 61.841 55.000 0.00 0.00 0.00 3.86
335 336 1.377725 AATGCCTGGAACGAGCCTG 60.378 57.895 0.00 0.00 0.00 4.85
336 337 1.377725 CAATGCCTGGAACGAGCCT 60.378 57.895 0.00 0.00 0.00 4.58
337 338 1.377202 TCAATGCCTGGAACGAGCC 60.377 57.895 0.00 0.00 0.00 4.70
338 339 0.674895 AGTCAATGCCTGGAACGAGC 60.675 55.000 0.00 0.00 0.00 5.03
339 340 1.813513 AAGTCAATGCCTGGAACGAG 58.186 50.000 0.00 0.00 0.00 4.18
340 341 2.270352 AAAGTCAATGCCTGGAACGA 57.730 45.000 0.00 0.00 0.00 3.85
341 342 3.369546 AAAAAGTCAATGCCTGGAACG 57.630 42.857 0.00 0.00 0.00 3.95
366 367 3.127533 GTGTCCTGGCCATCGTGC 61.128 66.667 5.51 0.00 0.00 5.34
367 368 0.888736 TTTGTGTCCTGGCCATCGTG 60.889 55.000 5.51 0.00 0.00 4.35
368 369 0.889186 GTTTGTGTCCTGGCCATCGT 60.889 55.000 5.51 0.00 0.00 3.73
369 370 1.586154 GGTTTGTGTCCTGGCCATCG 61.586 60.000 5.51 0.00 0.00 3.84
370 371 0.539438 TGGTTTGTGTCCTGGCCATC 60.539 55.000 5.51 0.11 0.00 3.51
371 372 0.105760 TTGGTTTGTGTCCTGGCCAT 60.106 50.000 5.51 0.00 0.00 4.40
372 373 0.324738 TTTGGTTTGTGTCCTGGCCA 60.325 50.000 4.71 4.71 0.00 5.36
373 374 0.104120 GTTTGGTTTGTGTCCTGGCC 59.896 55.000 0.00 0.00 0.00 5.36
374 375 0.820871 TGTTTGGTTTGTGTCCTGGC 59.179 50.000 0.00 0.00 0.00 4.85
375 376 2.802774 GCATGTTTGGTTTGTGTCCTGG 60.803 50.000 0.00 0.00 0.00 4.45
376 377 2.472816 GCATGTTTGGTTTGTGTCCTG 58.527 47.619 0.00 0.00 0.00 3.86
377 378 1.412343 GGCATGTTTGGTTTGTGTCCT 59.588 47.619 0.00 0.00 0.00 3.85
378 379 1.540146 GGGCATGTTTGGTTTGTGTCC 60.540 52.381 0.00 0.00 0.00 4.02
379 380 1.412343 AGGGCATGTTTGGTTTGTGTC 59.588 47.619 0.00 0.00 0.00 3.67
380 381 1.494960 AGGGCATGTTTGGTTTGTGT 58.505 45.000 0.00 0.00 0.00 3.72
381 382 2.618442 AAGGGCATGTTTGGTTTGTG 57.382 45.000 0.00 0.00 0.00 3.33
382 383 4.972751 ATTAAGGGCATGTTTGGTTTGT 57.027 36.364 0.00 0.00 0.00 2.83
383 384 5.062528 ACAATTAAGGGCATGTTTGGTTTG 58.937 37.500 0.00 0.00 0.00 2.93
384 385 5.303259 ACAATTAAGGGCATGTTTGGTTT 57.697 34.783 0.00 0.00 0.00 3.27
385 386 4.262851 GGACAATTAAGGGCATGTTTGGTT 60.263 41.667 0.00 0.00 0.00 3.67
386 387 3.260632 GGACAATTAAGGGCATGTTTGGT 59.739 43.478 0.00 0.00 0.00 3.67
387 388 3.369366 GGGACAATTAAGGGCATGTTTGG 60.369 47.826 0.00 0.00 0.00 3.28
388 389 3.369366 GGGGACAATTAAGGGCATGTTTG 60.369 47.826 0.00 0.00 0.00 2.93
389 390 2.837591 GGGGACAATTAAGGGCATGTTT 59.162 45.455 0.00 0.00 0.00 2.83
390 391 2.466846 GGGGACAATTAAGGGCATGTT 58.533 47.619 0.00 0.00 0.00 2.71
391 392 1.342975 GGGGGACAATTAAGGGCATGT 60.343 52.381 0.00 0.00 0.00 3.21
392 393 1.413118 GGGGGACAATTAAGGGCATG 58.587 55.000 0.00 0.00 0.00 4.06
393 394 3.946242 GGGGGACAATTAAGGGCAT 57.054 52.632 0.00 0.00 0.00 4.40
409 410 6.176183 CAAGCTCAAGAATACATATAGGGGG 58.824 44.000 0.00 0.00 0.00 5.40
410 411 6.773638 ACAAGCTCAAGAATACATATAGGGG 58.226 40.000 0.00 0.00 0.00 4.79
411 412 7.445121 TGACAAGCTCAAGAATACATATAGGG 58.555 38.462 0.00 0.00 0.00 3.53
465 466 3.028130 AGGTCAAAAAGAAGCGGGAAAA 58.972 40.909 0.00 0.00 0.00 2.29
513 514 1.027815 AGGAGGAGTTATGGGAGGGT 58.972 55.000 0.00 0.00 0.00 4.34
522 523 3.776731 TCCAATCTGGAGGAGGAGTTA 57.223 47.619 0.00 0.00 42.67 2.24
568 569 9.449719 AAGGTCATAAATGTTCGTTCTCTAATT 57.550 29.630 0.00 0.00 0.00 1.40
577 578 7.881142 TGATTCAAAAGGTCATAAATGTTCGT 58.119 30.769 0.00 0.00 0.00 3.85
693 698 2.757314 TCATGTGCCAACAAAACACTCA 59.243 40.909 0.00 0.00 40.46 3.41
746 751 8.115490 AGTCTATTTTGGAGAAACTTTCCATG 57.885 34.615 0.00 0.00 43.87 3.66
894 936 1.098712 TGGCCCCGTATTTTGCGATC 61.099 55.000 0.00 0.00 0.00 3.69
895 937 1.077357 TGGCCCCGTATTTTGCGAT 60.077 52.632 0.00 0.00 0.00 4.58
896 938 1.747367 CTGGCCCCGTATTTTGCGA 60.747 57.895 0.00 0.00 0.00 5.10
897 939 2.770589 CCTGGCCCCGTATTTTGCG 61.771 63.158 0.00 0.00 0.00 4.85
898 940 1.663379 GACCTGGCCCCGTATTTTGC 61.663 60.000 0.00 0.00 0.00 3.68
899 941 0.322997 TGACCTGGCCCCGTATTTTG 60.323 55.000 0.00 0.00 0.00 2.44
918 972 1.000396 GGAATTGGGCTCAGGCTGT 60.000 57.895 15.27 0.00 38.73 4.40
930 984 0.320334 GTGGTTTTGGGCCGGAATTG 60.320 55.000 5.05 0.00 0.00 2.32
1045 1100 2.441164 TCTCCTCTGCTCTCCCGC 60.441 66.667 0.00 0.00 0.00 6.13
1334 1391 1.138266 CGATAGAAAGGAAAGGCGGGA 59.862 52.381 0.00 0.00 39.76 5.14
1335 1392 1.583054 CGATAGAAAGGAAAGGCGGG 58.417 55.000 0.00 0.00 39.76 6.13
1342 1399 1.408266 GGGCAAGGCGATAGAAAGGAA 60.408 52.381 0.00 0.00 39.76 3.36
1343 1400 0.180406 GGGCAAGGCGATAGAAAGGA 59.820 55.000 0.00 0.00 39.76 3.36
1397 1454 4.761739 GGATGCAGATCGGGATTGATTTAA 59.238 41.667 0.78 0.00 0.00 1.52
1399 1456 3.152341 GGATGCAGATCGGGATTGATTT 58.848 45.455 0.78 0.00 0.00 2.17
1445 1502 1.664649 CGACTGTCCAAGCGCAAGA 60.665 57.895 11.47 0.00 43.02 3.02
1462 1519 3.185246 AGCCTAGAACACCATCAATCG 57.815 47.619 0.00 0.00 0.00 3.34
1463 1520 4.101741 ACCTAGCCTAGAACACCATCAATC 59.898 45.833 0.00 0.00 0.00 2.67
1464 1521 4.040755 ACCTAGCCTAGAACACCATCAAT 58.959 43.478 0.00 0.00 0.00 2.57
1465 1522 3.450904 ACCTAGCCTAGAACACCATCAA 58.549 45.455 0.00 0.00 0.00 2.57
1466 1523 3.116096 ACCTAGCCTAGAACACCATCA 57.884 47.619 0.00 0.00 0.00 3.07
1467 1524 5.810080 ATTACCTAGCCTAGAACACCATC 57.190 43.478 0.00 0.00 0.00 3.51
1468 1525 5.780793 CCTATTACCTAGCCTAGAACACCAT 59.219 44.000 0.00 0.00 0.00 3.55
1469 1526 5.145564 CCTATTACCTAGCCTAGAACACCA 58.854 45.833 0.00 0.00 0.00 4.17
1470 1527 4.021280 GCCTATTACCTAGCCTAGAACACC 60.021 50.000 0.00 0.00 0.00 4.16
1471 1528 4.587684 TGCCTATTACCTAGCCTAGAACAC 59.412 45.833 0.00 0.00 0.00 3.32
1472 1529 4.587684 GTGCCTATTACCTAGCCTAGAACA 59.412 45.833 0.00 0.00 0.00 3.18
1473 1530 4.587684 TGTGCCTATTACCTAGCCTAGAAC 59.412 45.833 0.00 0.00 0.00 3.01
1474 1531 4.811498 TGTGCCTATTACCTAGCCTAGAA 58.189 43.478 0.00 0.00 0.00 2.10
1475 1532 4.408276 CTGTGCCTATTACCTAGCCTAGA 58.592 47.826 0.00 0.00 0.00 2.43
1476 1533 3.056465 GCTGTGCCTATTACCTAGCCTAG 60.056 52.174 0.00 0.00 0.00 3.02
1477 1534 2.897969 GCTGTGCCTATTACCTAGCCTA 59.102 50.000 0.00 0.00 0.00 3.93
1478 1535 1.694696 GCTGTGCCTATTACCTAGCCT 59.305 52.381 0.00 0.00 0.00 4.58
1479 1536 1.270893 GGCTGTGCCTATTACCTAGCC 60.271 57.143 0.73 0.00 46.69 3.93
1480 1537 2.171341 GGCTGTGCCTATTACCTAGC 57.829 55.000 0.73 0.00 46.69 3.42
1500 1577 2.178890 CGCAATCTGGGAGCTCTGC 61.179 63.158 14.64 13.18 31.21 4.26
1520 1597 1.957177 TCGCACAAATTAACCCAGCAA 59.043 42.857 0.00 0.00 0.00 3.91
1525 1602 5.180680 AGAGTTTAGTCGCACAAATTAACCC 59.819 40.000 0.00 0.00 0.00 4.11
1539 1617 4.810790 TGCAGTTCTAGCAGAGTTTAGTC 58.189 43.478 0.00 0.00 37.02 2.59
1549 1627 2.026356 TGGGCTAATTGCAGTTCTAGCA 60.026 45.455 15.89 0.00 45.15 3.49
1550 1628 2.643551 TGGGCTAATTGCAGTTCTAGC 58.356 47.619 7.91 7.91 45.15 3.42
1561 1641 7.621683 TGTTTGGGAAGTTATTATGGGCTAATT 59.378 33.333 0.00 0.00 32.26 1.40
1570 1650 9.942850 CCTTCATTTTGTTTGGGAAGTTATTAT 57.057 29.630 0.00 0.00 34.58 1.28
1571 1651 7.875554 GCCTTCATTTTGTTTGGGAAGTTATTA 59.124 33.333 0.00 0.00 34.58 0.98
1647 1727 4.160439 TCAGTAAGATGCCCTACAACAGAG 59.840 45.833 0.00 0.00 0.00 3.35
1683 1818 0.037326 AGTGGCGTATCACTGGTGTG 60.037 55.000 7.25 0.00 45.27 3.82
1699 1834 0.873054 CCAGCAAGAGCAGAACAGTG 59.127 55.000 0.00 0.00 45.49 3.66
1743 1878 3.906218 AGGGAGTATCATGCTGCTATTGA 59.094 43.478 0.00 2.11 36.25 2.57
1777 1912 6.797033 GTCATGGACTTCAAAAACGTCTTATG 59.203 38.462 0.00 0.00 0.00 1.90
1861 1997 7.317390 ACGTGGTTTTAGTTCAAATTTCAAGT 58.683 30.769 0.00 0.00 0.00 3.16
1904 2040 9.442047 GGCAGCTCACTTATGTTATATATTTCT 57.558 33.333 0.00 0.00 0.00 2.52
2005 2141 8.814235 AGACGGTTACAAGTGATAAATAATTCG 58.186 33.333 0.00 0.00 0.00 3.34
2028 2164 7.354751 AGAAAATCCTGGTATGAGAGTAGAC 57.645 40.000 0.00 0.00 0.00 2.59
2120 2256 9.567848 AAGCGTTTGATTATGGTTAATAGTTTG 57.432 29.630 0.00 0.00 0.00 2.93
2308 2476 2.750166 TGAGTTCAAGGTGTTTTTGCGA 59.250 40.909 0.00 0.00 0.00 5.10
2311 2479 7.805700 ACAAAATTGAGTTCAAGGTGTTTTTG 58.194 30.769 19.15 19.15 41.59 2.44
2346 2517 5.762218 ACTTATGCCTAGCAATTAAGCAGAG 59.238 40.000 8.97 0.00 43.62 3.35
2354 2525 6.180472 ACAGTGTTACTTATGCCTAGCAATT 58.820 36.000 0.00 0.00 43.62 2.32
2380 2551 7.538575 ACCATTTGTATTGCTCAGAAATGTAC 58.461 34.615 0.00 0.00 33.87 2.90
2460 2632 4.730949 TTGACCGTACAGATAGGAAAGG 57.269 45.455 0.00 0.00 0.00 3.11
2472 2644 3.612860 CAGCTGTTGAGTATTGACCGTAC 59.387 47.826 5.25 0.00 0.00 3.67
2475 2647 2.002586 CCAGCTGTTGAGTATTGACCG 58.997 52.381 13.81 0.00 0.00 4.79
2549 2724 4.641645 CGTCCCCTTGTGCTGGCA 62.642 66.667 0.00 0.00 0.00 4.92
2659 2837 6.250739 GGTATGTATGCTACGTTGATGTATCG 59.749 42.308 0.00 0.00 0.00 2.92
2667 2845 2.103432 TGGGGGTATGTATGCTACGTTG 59.897 50.000 0.00 0.00 0.00 4.10
2672 2850 4.586841 GCATTTTTGGGGGTATGTATGCTA 59.413 41.667 0.00 0.00 35.49 3.49
2684 2862 5.930837 TTATCCTAACAGCATTTTTGGGG 57.069 39.130 0.00 0.00 0.00 4.96
2729 2914 9.791820 TGCTTATGAAAAACATGATAGTGAATG 57.208 29.630 0.00 0.00 39.77 2.67
2760 2953 9.632807 GCATCGAAACTAATAGACTTCATATCT 57.367 33.333 0.00 0.00 0.00 1.98
2761 2954 8.865001 GGCATCGAAACTAATAGACTTCATATC 58.135 37.037 0.00 0.00 0.00 1.63
2787 2980 2.996249 TCTAGCCAAGAAGATGCCAG 57.004 50.000 0.00 0.00 0.00 4.85
2789 2982 4.039730 TCAGTATCTAGCCAAGAAGATGCC 59.960 45.833 0.00 0.00 37.89 4.40
2953 3153 2.832129 AGAAACATCTACGAAGGCCAGA 59.168 45.455 5.01 0.00 0.00 3.86
2954 3154 3.252974 AGAAACATCTACGAAGGCCAG 57.747 47.619 5.01 0.00 0.00 4.85
2955 3155 3.695830 AAGAAACATCTACGAAGGCCA 57.304 42.857 5.01 0.00 0.00 5.36
2956 3156 6.238402 GGATTTAAGAAACATCTACGAAGGCC 60.238 42.308 0.00 0.00 0.00 5.19
2957 3157 6.315393 TGGATTTAAGAAACATCTACGAAGGC 59.685 38.462 0.00 0.00 0.00 4.35
2958 3158 7.549488 ACTGGATTTAAGAAACATCTACGAAGG 59.451 37.037 0.00 0.00 0.00 3.46
2959 3159 8.383619 CACTGGATTTAAGAAACATCTACGAAG 58.616 37.037 0.00 0.00 0.00 3.79
2962 3162 6.816640 TCCACTGGATTTAAGAAACATCTACG 59.183 38.462 0.00 0.00 0.00 3.51
3019 3219 4.898829 TTACATATTGCCATGACACAGC 57.101 40.909 0.00 0.00 0.00 4.40
3109 3323 2.694628 AGCCAAACAGCTCAAATTGTCA 59.305 40.909 0.00 0.00 39.48 3.58
3112 3326 4.813027 ACATAGCCAAACAGCTCAAATTG 58.187 39.130 0.00 0.00 43.67 2.32
3176 3390 3.304726 GGTGAAGGCACTAAAGCAGTTTC 60.305 47.826 0.00 0.00 44.52 2.78
3207 3425 1.251251 ACCATTCCAAGCTGAACTGC 58.749 50.000 0.00 0.00 0.00 4.40
3225 3443 7.945033 TTTAAGAATGCCTTCATGTTTCAAC 57.055 32.000 4.48 0.00 36.34 3.18
3260 3478 2.747855 GGCCGCCAAACTCTCCTG 60.748 66.667 3.91 0.00 0.00 3.86
3261 3479 2.351924 TTTGGCCGCCAAACTCTCCT 62.352 55.000 29.88 0.00 46.92 3.69
3312 3545 8.917088 CAGAATTGTTGAATTATGGGTCCTTAT 58.083 33.333 0.00 0.00 37.20 1.73
3364 3809 4.096382 CCATATTTTTCCGTGAGAACTGGG 59.904 45.833 0.00 0.00 32.95 4.45
3395 3840 7.713734 ATTGAGATGGTGATCATTGAAGTTT 57.286 32.000 0.00 0.00 35.97 2.66
3454 3899 6.140786 GCTGAACGAACGTGATATATCAGTA 58.859 40.000 15.83 0.00 37.51 2.74
3504 3992 7.819900 GTCTAGTTGGTTACTGAAAGATCATGT 59.180 37.037 0.00 0.00 37.73 3.21
3538 4026 1.816074 TTACATTTCCACGGCCTGTC 58.184 50.000 0.00 0.00 0.00 3.51
3649 4137 3.521560 GTCCGATGTCTGAAATAGCACA 58.478 45.455 0.00 0.00 0.00 4.57
3654 4142 4.819105 AAGTGGTCCGATGTCTGAAATA 57.181 40.909 0.00 0.00 0.00 1.40
3720 4209 0.958822 CCTTAGGCCGCAACTGTTTT 59.041 50.000 0.00 0.00 0.00 2.43
3820 4311 6.093219 CAGAGCAAATGTAGCTGTCTTGTATT 59.907 38.462 0.00 0.00 43.58 1.89
3821 4312 5.583854 CAGAGCAAATGTAGCTGTCTTGTAT 59.416 40.000 0.00 0.00 43.58 2.29
3860 4351 2.774234 AGCTCCAGCAGTTGTACCATAT 59.226 45.455 0.48 0.00 45.16 1.78
3886 4377 3.618594 CCAACTCATTGTACCTGTGATCG 59.381 47.826 0.00 0.00 33.60 3.69
4015 4506 1.800586 CCAACTGACCGTGTGAATCTG 59.199 52.381 0.00 0.00 0.00 2.90
4016 4507 1.416401 ACCAACTGACCGTGTGAATCT 59.584 47.619 0.00 0.00 0.00 2.40
4017 4508 1.878953 ACCAACTGACCGTGTGAATC 58.121 50.000 0.00 0.00 0.00 2.52
4018 4509 2.218603 GAACCAACTGACCGTGTGAAT 58.781 47.619 0.00 0.00 0.00 2.57
4019 4510 1.658994 GAACCAACTGACCGTGTGAA 58.341 50.000 0.00 0.00 0.00 3.18
4041 4533 9.502091 AGAAGTAGATGTGCATTGTTTTACTTA 57.498 29.630 0.00 0.00 32.14 2.24
4058 4550 4.202253 TGTGCACAGTCAACAGAAGTAGAT 60.202 41.667 17.42 0.00 0.00 1.98
4078 4570 2.638480 TTCCTGTTCCCAAGTCTGTG 57.362 50.000 0.00 0.00 0.00 3.66
4106 4598 1.758862 GCCCTTTTCTGCATGCCTAAT 59.241 47.619 16.68 0.00 0.00 1.73
4107 4599 1.185315 GCCCTTTTCTGCATGCCTAA 58.815 50.000 16.68 6.46 0.00 2.69
4178 4670 1.933853 CGTAGAGGTTGGCTATGTTGC 59.066 52.381 0.00 0.00 0.00 4.17
4179 4671 2.167693 TCCGTAGAGGTTGGCTATGTTG 59.832 50.000 0.00 0.00 41.99 3.33
4180 4672 2.431057 CTCCGTAGAGGTTGGCTATGTT 59.569 50.000 0.00 0.00 41.99 2.71
4181 4673 2.032620 CTCCGTAGAGGTTGGCTATGT 58.967 52.381 0.00 0.00 41.99 2.29
4182 4674 2.802787 CTCCGTAGAGGTTGGCTATG 57.197 55.000 0.00 0.00 41.99 2.23
4192 4684 2.141535 GCTATGTTGCCTCCGTAGAG 57.858 55.000 0.00 0.00 40.09 2.43
4211 4703 3.126001 TGTTGCTTCTGTAGAGGTTGG 57.874 47.619 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.