Multiple sequence alignment - TraesCS2A01G154300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G154300 chr2A 100.000 4657 0 0 1 4657 101886231 101890887 0.000000e+00 8600.0
1 TraesCS2A01G154300 chr2A 95.122 41 2 0 4173 4213 101890349 101890389 1.080000e-06 65.8
2 TraesCS2A01G154300 chr2A 95.122 41 2 0 4119 4159 101890403 101890443 1.080000e-06 65.8
3 TraesCS2A01G154300 chr2D 91.111 2025 130 25 1954 3944 102858108 102860116 0.000000e+00 2697.0
4 TraesCS2A01G154300 chr2D 87.915 1688 97 34 3 1637 102856062 102857695 0.000000e+00 1888.0
5 TraesCS2A01G154300 chr2D 87.939 655 54 16 4015 4657 102860336 102860977 0.000000e+00 749.0
6 TraesCS2A01G154300 chr2D 88.406 207 21 2 4340 4543 102860130 102860336 3.600000e-61 246.0
7 TraesCS2A01G154300 chr2D 96.364 55 0 1 1822 1876 102857886 102857938 6.420000e-14 89.8
8 TraesCS2A01G154300 chr2B 91.127 1961 114 23 2005 3944 154235048 154236969 0.000000e+00 2603.0
9 TraesCS2A01G154300 chr2B 87.470 1692 96 43 3 1617 154232674 154234326 0.000000e+00 1844.0
10 TraesCS2A01G154300 chr2B 87.328 655 58 16 4015 4657 154237189 154237830 0.000000e+00 726.0
11 TraesCS2A01G154300 chr2B 89.372 207 19 2 4340 4543 154236983 154237189 1.660000e-64 257.0
12 TraesCS2A01G154300 chr2B 79.389 262 36 13 1640 1893 154234399 154234650 8.010000e-38 169.0
13 TraesCS2A01G154300 chr1D 80.000 185 31 6 1435 1616 366723826 366724007 1.050000e-26 132.0
14 TraesCS2A01G154300 chr1A 80.220 182 31 5 1437 1616 465454635 465454457 1.050000e-26 132.0
15 TraesCS2A01G154300 chr1B 79.775 178 32 4 1441 1616 491040846 491040671 4.890000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G154300 chr2A 101886231 101890887 4656 False 2910.533333 8600 96.7480 1 4657 3 chr2A.!!$F1 4656
1 TraesCS2A01G154300 chr2D 102856062 102860977 4915 False 1133.960000 2697 90.3470 3 4657 5 chr2D.!!$F1 4654
2 TraesCS2A01G154300 chr2B 154232674 154237830 5156 False 1119.800000 2603 86.9372 3 4657 5 chr2B.!!$F1 4654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 768 0.030908 CTCGCCTCACCGTAATCCTC 59.969 60.000 0.0 0.0 0.00 3.71 F
960 1035 0.176680 CCAGAGATCCACCAGTTCGG 59.823 60.000 0.0 0.0 42.50 4.30 F
2083 2600 0.323629 TTTGGCTAGGTTGAGGGACG 59.676 55.000 0.0 0.0 0.00 4.79 F
2982 3499 1.064505 CATTGCAGGTATGTTGCTCCG 59.935 52.381 0.0 0.0 42.02 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2612 3129 0.250989 CACCCTTTTGCCGTCCCTAA 60.251 55.000 0.0 0.0 0.00 2.69 R
2620 3137 0.809636 GCAACACACACCCTTTTGCC 60.810 55.000 0.0 0.0 37.24 4.52 R
3327 3855 0.254178 GCCTCTTGGAAGCATCAGGA 59.746 55.000 0.0 0.0 34.57 3.86 R
4182 4881 1.069513 CGGTGGTGTACTGACTTTGGA 59.930 52.381 0.0 0.0 37.93 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.130340 ACAACGCTGGATTTTTGTTCACT 59.870 39.130 0.00 0.00 0.00 3.41
28 29 3.354089 ACGCTGGATTTTTGTTCACTG 57.646 42.857 0.00 0.00 0.00 3.66
70 71 8.037758 TGCAAAAGAAAGTCAGGTTTATTTCAA 58.962 29.630 0.00 0.00 31.32 2.69
71 72 8.878769 GCAAAAGAAAGTCAGGTTTATTTCAAA 58.121 29.630 0.00 0.00 31.32 2.69
214 232 1.497991 TTCTGCAGCAGTGTAACGTC 58.502 50.000 22.10 0.00 45.86 4.34
220 238 1.995484 CAGCAGTGTAACGTCCATGAG 59.005 52.381 0.00 0.00 45.86 2.90
221 239 1.066858 AGCAGTGTAACGTCCATGAGG 60.067 52.381 0.00 0.00 45.86 3.86
222 240 1.067142 GCAGTGTAACGTCCATGAGGA 60.067 52.381 0.00 0.00 45.86 3.71
233 251 3.565764 TCCATGAGGAAATGTAGCCTG 57.434 47.619 0.00 0.00 42.23 4.85
240 258 1.202940 GGAAATGTAGCCTGGGATCCC 60.203 57.143 25.22 25.22 0.00 3.85
249 267 3.346734 TGGGATCCCAAGCACCCC 61.347 66.667 32.09 1.56 44.12 4.95
272 290 3.859386 GCGGAAACAAATGATTGGATGTC 59.141 43.478 0.00 0.00 41.01 3.06
277 301 7.118101 CGGAAACAAATGATTGGATGTCAAAAT 59.882 33.333 0.00 0.00 41.01 1.82
283 307 7.484993 AATGATTGGATGTCAAAATCAGGAA 57.515 32.000 12.03 0.00 42.03 3.36
292 316 7.704047 GGATGTCAAAATCAGGAATAGAAAAGC 59.296 37.037 0.00 0.00 0.00 3.51
293 317 7.765695 TGTCAAAATCAGGAATAGAAAAGCT 57.234 32.000 0.00 0.00 0.00 3.74
299 323 4.397420 TCAGGAATAGAAAAGCTGCAACA 58.603 39.130 1.02 0.00 0.00 3.33
300 324 4.216257 TCAGGAATAGAAAAGCTGCAACAC 59.784 41.667 1.02 0.00 0.00 3.32
308 332 3.782244 GCTGCAACACGCTCTCCG 61.782 66.667 0.00 0.00 43.06 4.63
316 340 3.148279 ACGCTCTCCGATCCCCAC 61.148 66.667 0.00 0.00 41.02 4.61
350 374 3.683802 GGCAGATGGGAGAAAGGATATG 58.316 50.000 0.00 0.00 0.00 1.78
379 403 1.811266 CACTCCTCACCGCAATCCG 60.811 63.158 0.00 0.00 0.00 4.18
392 416 2.598192 CGCAATCCGCACCTAATTTTTG 59.402 45.455 0.00 0.00 42.60 2.44
394 418 4.673061 CGCAATCCGCACCTAATTTTTGTA 60.673 41.667 0.00 0.00 42.60 2.41
411 440 5.913137 TTTGTATACATTTGCCTCCCTTG 57.087 39.130 6.36 0.00 0.00 3.61
418 447 0.112412 TTTGCCTCCCTTGTCCTTCC 59.888 55.000 0.00 0.00 0.00 3.46
435 464 3.507622 CCTTCCTCCACACTTTGAATTCC 59.492 47.826 2.27 0.00 0.00 3.01
449 487 1.208165 AATTCCCGGCTTCCTCACCT 61.208 55.000 0.00 0.00 0.00 4.00
452 490 4.148825 CCGGCTTCCTCACCTCCG 62.149 72.222 0.00 0.00 39.79 4.63
455 493 4.475135 GCTTCCTCACCTCCGCCC 62.475 72.222 0.00 0.00 0.00 6.13
514 552 2.035632 CCCAATTACTCCTCTCGCTCT 58.964 52.381 0.00 0.00 0.00 4.09
515 553 2.432510 CCCAATTACTCCTCTCGCTCTT 59.567 50.000 0.00 0.00 0.00 2.85
519 561 4.911514 ATTACTCCTCTCGCTCTTTCTC 57.088 45.455 0.00 0.00 0.00 2.87
525 567 1.219393 CTCGCTCTTTCTCCCACCC 59.781 63.158 0.00 0.00 0.00 4.61
528 570 1.604915 GCTCTTTCTCCCACCCTCC 59.395 63.158 0.00 0.00 0.00 4.30
549 591 3.624861 CCTCCCTTCAATTGTCATTCTCG 59.375 47.826 5.13 0.00 0.00 4.04
578 626 1.066587 CGAGCCTAGCACTAGCACC 59.933 63.158 0.00 0.00 45.49 5.01
630 678 1.594564 GGTAATCTTCTCCCCGCGC 60.595 63.158 0.00 0.00 0.00 6.86
631 679 1.949631 GTAATCTTCTCCCCGCGCG 60.950 63.158 25.67 25.67 0.00 6.86
632 680 3.785189 TAATCTTCTCCCCGCGCGC 62.785 63.158 27.36 23.91 0.00 6.86
685 739 1.406539 GCCACCTGCACCATATCTTTG 59.593 52.381 0.00 0.00 40.77 2.77
696 750 6.716628 TGCACCATATCTTTGTTTTTCTCTCT 59.283 34.615 0.00 0.00 0.00 3.10
697 751 7.094634 TGCACCATATCTTTGTTTTTCTCTCTC 60.095 37.037 0.00 0.00 0.00 3.20
714 768 0.030908 CTCGCCTCACCGTAATCCTC 59.969 60.000 0.00 0.00 0.00 3.71
725 779 5.293324 TCACCGTAATCCTCAATTTTCATCG 59.707 40.000 0.00 0.00 0.00 3.84
813 875 4.124351 CACATTGCTGCGGCCCTG 62.124 66.667 16.57 14.63 37.74 4.45
846 921 2.028112 CACCCGATCAACTTCCTCTTCA 60.028 50.000 0.00 0.00 0.00 3.02
863 938 3.480133 ATCCCCGCTCCCTTTCCG 61.480 66.667 0.00 0.00 0.00 4.30
960 1035 0.176680 CCAGAGATCCACCAGTTCGG 59.823 60.000 0.00 0.00 42.50 4.30
1572 1677 3.672447 TACCACGGCGTGCTCGAA 61.672 61.111 33.15 13.41 39.71 3.71
1677 1834 8.603181 CAACGTTGAAATATCATATCTGTCACA 58.397 33.333 23.90 0.00 34.96 3.58
1746 1904 9.532697 CACCGATTTGAATTTGAATTTGAATTC 57.467 29.630 15.26 15.26 43.91 2.17
1748 1906 8.646356 CCGATTTGAATTTGAATTTGAATTCGA 58.354 29.630 13.55 13.65 46.01 3.71
1784 1942 6.942576 GCTCCCAATTGAAAAGCCTCTATATA 59.057 38.462 7.12 0.00 0.00 0.86
1785 1943 7.613411 GCTCCCAATTGAAAAGCCTCTATATAT 59.387 37.037 7.12 0.00 0.00 0.86
1790 1948 9.926751 CAATTGAAAAGCCTCTATATATATGCG 57.073 33.333 0.00 0.00 0.00 4.73
1791 1949 7.539712 TTGAAAAGCCTCTATATATATGCGC 57.460 36.000 0.00 0.00 0.00 6.09
1792 1950 6.878317 TGAAAAGCCTCTATATATATGCGCT 58.122 36.000 9.73 4.14 0.00 5.92
1793 1951 6.758416 TGAAAAGCCTCTATATATATGCGCTG 59.242 38.462 9.73 0.00 0.00 5.18
1794 1952 5.860941 AAGCCTCTATATATATGCGCTGT 57.139 39.130 9.73 0.00 0.00 4.40
1795 1953 5.860941 AGCCTCTATATATATGCGCTGTT 57.139 39.130 9.73 0.00 0.00 3.16
1796 1954 6.961360 AGCCTCTATATATATGCGCTGTTA 57.039 37.500 9.73 0.00 0.00 2.41
1797 1955 6.976088 AGCCTCTATATATATGCGCTGTTAG 58.024 40.000 9.73 0.63 0.00 2.34
1798 1956 6.547880 AGCCTCTATATATATGCGCTGTTAGT 59.452 38.462 9.73 0.00 0.00 2.24
1799 1957 7.720074 AGCCTCTATATATATGCGCTGTTAGTA 59.280 37.037 9.73 0.00 0.00 1.82
1800 1958 8.516234 GCCTCTATATATATGCGCTGTTAGTAT 58.484 37.037 9.73 3.17 0.00 2.12
1804 1962 9.967346 CTATATATATGCGCTGTTAGTATTGGT 57.033 33.333 9.73 0.00 0.00 3.67
1805 1963 6.968131 ATATATGCGCTGTTAGTATTGGTG 57.032 37.500 9.73 0.00 0.00 4.17
1806 1964 1.083489 TGCGCTGTTAGTATTGGTGC 58.917 50.000 9.73 0.00 0.00 5.01
1807 1965 0.377203 GCGCTGTTAGTATTGGTGCC 59.623 55.000 0.00 0.00 0.00 5.01
1808 1966 0.650512 CGCTGTTAGTATTGGTGCCG 59.349 55.000 0.00 0.00 0.00 5.69
1809 1967 1.014352 GCTGTTAGTATTGGTGCCGG 58.986 55.000 0.00 0.00 0.00 6.13
1810 1968 1.406341 GCTGTTAGTATTGGTGCCGGA 60.406 52.381 5.05 0.00 0.00 5.14
1811 1969 2.277084 CTGTTAGTATTGGTGCCGGAC 58.723 52.381 5.05 0.00 0.00 4.79
1812 1970 1.283736 GTTAGTATTGGTGCCGGACG 58.716 55.000 5.05 0.00 0.00 4.79
1813 1971 0.460635 TTAGTATTGGTGCCGGACGC 60.461 55.000 5.05 2.70 38.31 5.19
1814 1972 1.324740 TAGTATTGGTGCCGGACGCT 61.325 55.000 5.05 0.00 38.78 5.07
1815 1973 2.125310 TATTGGTGCCGGACGCTG 60.125 61.111 5.05 0.00 38.78 5.18
1844 2042 3.274288 GCTGCAGCTTAGGTTCAGTAAT 58.726 45.455 31.33 0.00 38.21 1.89
1845 2043 3.691609 GCTGCAGCTTAGGTTCAGTAATT 59.308 43.478 31.33 0.00 38.21 1.40
1893 2091 5.010012 AGCTTCAGTGTGTTTTAATTGAGGG 59.990 40.000 0.00 0.00 0.00 4.30
1896 2094 4.513692 TCAGTGTGTTTTAATTGAGGGACG 59.486 41.667 0.00 0.00 0.00 4.79
1899 2097 3.252215 TGTGTTTTAATTGAGGGACGCTG 59.748 43.478 0.00 0.00 0.00 5.18
1900 2098 2.227865 TGTTTTAATTGAGGGACGCTGC 59.772 45.455 0.00 0.00 0.00 5.25
1901 2099 1.459450 TTTAATTGAGGGACGCTGCC 58.541 50.000 0.00 0.00 0.00 4.85
1944 2142 2.583520 CTGGCTCAGGGTGCTCTC 59.416 66.667 0.00 0.00 0.00 3.20
1948 2146 4.504916 CTCAGGGTGCTCTCCGCG 62.505 72.222 0.00 0.00 43.27 6.46
1972 2453 1.129251 ACAACTGCTCGATGAAATGCG 59.871 47.619 0.00 0.00 0.00 4.73
1978 2463 2.539688 TGCTCGATGAAATGCGTATGAC 59.460 45.455 0.00 0.00 0.00 3.06
1985 2472 6.868339 TCGATGAAATGCGTATGACAGATATT 59.132 34.615 0.00 0.00 0.00 1.28
2013 2518 2.508300 AGGACAGAGGGTAGAGAGAGAC 59.492 54.545 0.00 0.00 0.00 3.36
2025 2539 0.470833 AGAGAGACTGCCAGGTGTGT 60.471 55.000 0.00 0.00 0.00 3.72
2040 2554 2.948979 GGTGTGTGATGACCTGTCAAAA 59.051 45.455 3.79 0.00 43.58 2.44
2049 2563 3.030291 TGACCTGTCAAAACCATGCTTT 58.970 40.909 0.00 0.00 36.53 3.51
2050 2564 4.211125 TGACCTGTCAAAACCATGCTTTA 58.789 39.130 0.00 0.00 36.53 1.85
2083 2600 0.323629 TTTGGCTAGGTTGAGGGACG 59.676 55.000 0.00 0.00 0.00 4.79
2113 2630 5.038683 GTCCGGTTTAAAAAGTTGAAGTGG 58.961 41.667 0.00 0.00 0.00 4.00
2245 2762 5.957842 TGGATTGGTCAATGTTTAGTGTC 57.042 39.130 0.43 0.00 0.00 3.67
2248 2765 6.016360 TGGATTGGTCAATGTTTAGTGTCTTG 60.016 38.462 0.43 0.00 0.00 3.02
2257 2774 5.484173 TGTTTAGTGTCTTGCTCAAACTG 57.516 39.130 0.00 0.00 0.00 3.16
2264 2781 5.533903 AGTGTCTTGCTCAAACTGATGAAAT 59.466 36.000 0.00 0.00 0.00 2.17
2268 2785 7.223193 TGTCTTGCTCAAACTGATGAAATTTTG 59.777 33.333 0.00 0.00 0.00 2.44
2269 2786 7.223387 GTCTTGCTCAAACTGATGAAATTTTGT 59.777 33.333 0.00 0.00 32.02 2.83
2375 2892 2.474816 CTTGTGCGCCTTCTAGGATAC 58.525 52.381 4.18 0.00 37.67 2.24
2414 2931 5.046663 TCAGAGGTATTGTCTTGTATGTGCA 60.047 40.000 0.00 0.00 0.00 4.57
2513 3030 5.826643 TGGTTGGTATTCTTAGGATGCTTT 58.173 37.500 0.00 0.00 0.00 3.51
2533 3050 8.487313 TGCTTTTGTACGAGTATGTTGATAAT 57.513 30.769 0.00 0.00 0.00 1.28
2578 3095 1.633945 GGGGATGTTGGACCTGTAAGT 59.366 52.381 0.00 0.00 0.00 2.24
2612 3129 5.370584 TGGGAACACAGGATGAAGATCATAT 59.629 40.000 0.00 0.00 41.26 1.78
2620 3137 6.071108 ACAGGATGAAGATCATATTAGGGACG 60.071 42.308 0.00 0.00 37.20 4.79
2632 3149 1.420532 TAGGGACGGCAAAAGGGTGT 61.421 55.000 0.00 0.00 0.00 4.16
2847 3364 1.617947 AACTCTTAGGCCCAGAGCGG 61.618 60.000 23.84 7.41 45.17 5.52
2900 3417 4.015872 TCGGGTTAGTTTCTCTGCATTT 57.984 40.909 0.00 0.00 0.00 2.32
2905 3422 4.762251 GGTTAGTTTCTCTGCATTTCCTGT 59.238 41.667 0.00 0.00 0.00 4.00
2921 3438 8.100791 GCATTTCCTGTACCTATGGTGATATTA 58.899 37.037 0.00 0.00 36.19 0.98
2982 3499 1.064505 CATTGCAGGTATGTTGCTCCG 59.935 52.381 0.00 0.00 42.02 4.63
3009 3526 1.746470 CGGGGACTGGGATGTTAAAC 58.254 55.000 0.00 0.00 0.00 2.01
3018 3535 4.885325 ACTGGGATGTTAAACGAAACAAGT 59.115 37.500 6.79 4.08 42.33 3.16
3039 3556 9.920946 ACAAGTGATGTATATAGTTTTGGGATT 57.079 29.630 0.00 0.00 41.63 3.01
3093 3610 2.583143 GTGGATTATAACAGGCCACCC 58.417 52.381 5.01 0.00 42.37 4.61
3105 3622 1.988406 GCCACCCGGAGAGGTTAGT 60.988 63.158 0.73 0.00 38.39 2.24
3106 3623 1.957765 GCCACCCGGAGAGGTTAGTC 61.958 65.000 0.73 0.00 38.39 2.59
3111 3628 1.139058 CCCGGAGAGGTTAGTCATTGG 59.861 57.143 0.73 0.00 38.74 3.16
3116 3633 3.003480 GAGAGGTTAGTCATTGGTGTGC 58.997 50.000 0.00 0.00 0.00 4.57
3120 3637 2.488153 GGTTAGTCATTGGTGTGCCTTC 59.512 50.000 0.00 0.00 35.27 3.46
3153 3670 9.585099 CCTTATGAGCTTGTTAATGCATTTTTA 57.415 29.630 18.75 0.00 0.00 1.52
3211 3739 8.528044 TTTTCAGGTAAACTTAGTTGATTGGT 57.472 30.769 0.00 0.00 0.00 3.67
3213 3741 7.504924 TCAGGTAAACTTAGTTGATTGGTTG 57.495 36.000 0.00 0.00 0.00 3.77
3327 3855 2.398554 GGCGTTGCGATGTGTGGAT 61.399 57.895 0.00 0.00 0.00 3.41
3409 3937 6.352737 GGATTTCCCCTACAACAGAGATGTAA 60.353 42.308 0.00 0.00 33.17 2.41
3434 3962 8.682936 AGTCAATAAAGGCATACATTCCTAAG 57.317 34.615 0.00 0.00 31.24 2.18
3435 3963 8.275040 AGTCAATAAAGGCATACATTCCTAAGT 58.725 33.333 0.00 0.00 31.24 2.24
3461 3989 7.909518 TGGATTTTCATTTCATCTGGACATTT 58.090 30.769 0.00 0.00 0.00 2.32
3593 4121 5.544176 ACCGACTAATGGAATAGATGATGGT 59.456 40.000 0.00 0.00 0.00 3.55
3615 4143 2.746279 AATTGACAACAGTGGGGACA 57.254 45.000 0.00 0.00 38.70 4.02
3616 4144 2.746279 ATTGACAACAGTGGGGACAA 57.254 45.000 0.00 0.00 46.06 3.18
3617 4145 1.757682 TTGACAACAGTGGGGACAAC 58.242 50.000 0.00 0.00 46.06 3.32
3658 4186 3.332485 TGGAAAAATACAGTGGCCTAGGT 59.668 43.478 11.31 1.14 0.00 3.08
3660 4188 4.880120 GGAAAAATACAGTGGCCTAGGTAC 59.120 45.833 11.31 10.25 0.00 3.34
3667 4195 1.549170 AGTGGCCTAGGTACTTGTTCG 59.451 52.381 11.31 0.00 41.75 3.95
3678 4206 5.379187 AGGTACTTGTTCGGTTACCAAATT 58.621 37.500 1.13 0.00 27.25 1.82
3706 4234 4.325501 GGAACCCCATGTTGTAAATAGGGA 60.326 45.833 5.06 0.00 41.74 4.20
3729 4257 0.179015 TACCTGGTGAAGCCGCAAAA 60.179 50.000 10.23 0.00 41.21 2.44
3747 4275 7.665471 CCGCAAAATGTCATTATTTTAGTGTG 58.335 34.615 0.00 0.00 37.97 3.82
3749 4277 9.075519 CGCAAAATGTCATTATTTTAGTGTGAT 57.924 29.630 0.00 0.00 37.97 3.06
3769 4297 2.278026 TCACGGAGAACATCACATCG 57.722 50.000 0.00 0.00 0.00 3.84
3770 4298 1.816224 TCACGGAGAACATCACATCGA 59.184 47.619 0.00 0.00 0.00 3.59
3785 4313 8.309656 ACATCACATCGAATGTATATGTCATCT 58.690 33.333 14.93 0.00 41.42 2.90
3806 4343 9.364653 TCATCTAAGGAAAGTAGTAGTAATCCC 57.635 37.037 6.25 0.00 0.00 3.85
3847 4384 8.408601 ACTGGAGATGTTTTTACATGATAATGC 58.591 33.333 0.00 0.00 0.00 3.56
3849 4386 7.341512 TGGAGATGTTTTTACATGATAATGCCA 59.658 33.333 0.00 0.00 0.00 4.92
3870 4408 7.081349 TGCCATGATCTTTTAAGTTAACAACG 58.919 34.615 8.61 0.00 36.23 4.10
3871 4409 7.041030 TGCCATGATCTTTTAAGTTAACAACGA 60.041 33.333 8.61 0.00 36.23 3.85
3909 4447 4.276431 CAGACGGCCTTTGGTTAAAAACTA 59.724 41.667 0.00 0.00 0.00 2.24
3913 4451 3.571571 GCCTTTGGTTAAAAACTAGCCG 58.428 45.455 0.00 0.00 0.00 5.52
3917 4455 0.179181 GGTTAAAAACTAGCCGGCGC 60.179 55.000 23.20 0.00 0.00 6.53
3929 4467 4.389576 CGGCGCTTGTGACTTGCC 62.390 66.667 7.64 0.00 42.29 4.52
3935 4473 0.536006 GCTTGTGACTTGCCCTGACT 60.536 55.000 0.00 0.00 0.00 3.41
3944 4482 4.436998 GCCCTGACTCCGACACCG 62.437 72.222 0.00 0.00 0.00 4.94
3946 4484 2.258591 CCTGACTCCGACACCGTG 59.741 66.667 0.00 0.00 0.00 4.94
3948 4486 1.362717 CTGACTCCGACACCGTGTT 59.637 57.895 5.45 0.00 0.00 3.32
3949 4487 0.939577 CTGACTCCGACACCGTGTTG 60.940 60.000 11.50 11.50 0.00 3.33
3950 4488 1.066918 GACTCCGACACCGTGTTGT 59.933 57.895 16.25 8.65 29.69 3.32
3951 4489 0.938168 GACTCCGACACCGTGTTGTC 60.938 60.000 16.25 12.80 42.24 3.18
3953 4491 0.319555 CTCCGACACCGTGTTGTCAT 60.320 55.000 16.25 0.00 45.38 3.06
3954 4492 0.105224 TCCGACACCGTGTTGTCATT 59.895 50.000 16.25 0.00 45.38 2.57
3955 4493 1.340568 TCCGACACCGTGTTGTCATTA 59.659 47.619 16.25 0.00 45.38 1.90
3958 4496 3.187637 CCGACACCGTGTTGTCATTATTT 59.812 43.478 16.25 0.00 45.38 1.40
3962 4500 6.236017 ACACCGTGTTGTCATTATTTACAG 57.764 37.500 0.00 0.00 0.00 2.74
3964 4502 6.930164 ACACCGTGTTGTCATTATTTACAGTA 59.070 34.615 0.00 0.00 0.00 2.74
3965 4503 7.095523 ACACCGTGTTGTCATTATTTACAGTAC 60.096 37.037 0.00 0.00 0.00 2.73
3967 4505 7.117236 ACCGTGTTGTCATTATTTACAGTACAG 59.883 37.037 0.00 0.00 0.00 2.74
3968 4506 7.117236 CCGTGTTGTCATTATTTACAGTACAGT 59.883 37.037 0.00 0.00 0.00 3.55
3969 4507 8.492748 CGTGTTGTCATTATTTACAGTACAGTT 58.507 33.333 0.00 0.00 0.00 3.16
3970 4508 9.807386 GTGTTGTCATTATTTACAGTACAGTTC 57.193 33.333 0.00 0.00 0.00 3.01
3971 4509 9.772973 TGTTGTCATTATTTACAGTACAGTTCT 57.227 29.630 0.00 0.00 0.00 3.01
3973 4511 9.990360 TTGTCATTATTTACAGTACAGTTCTGA 57.010 29.630 13.76 0.00 36.81 3.27
3974 4512 9.639601 TGTCATTATTTACAGTACAGTTCTGAG 57.360 33.333 13.76 0.00 36.81 3.35
3975 4513 9.856488 GTCATTATTTACAGTACAGTTCTGAGA 57.144 33.333 13.76 0.00 36.81 3.27
3981 4519 7.962964 TTACAGTACAGTTCTGAGATTTTGG 57.037 36.000 13.76 0.00 36.81 3.28
3982 4520 6.174720 ACAGTACAGTTCTGAGATTTTGGA 57.825 37.500 13.76 0.00 36.81 3.53
3983 4521 6.773638 ACAGTACAGTTCTGAGATTTTGGAT 58.226 36.000 13.76 0.00 36.81 3.41
3984 4522 7.907389 ACAGTACAGTTCTGAGATTTTGGATA 58.093 34.615 13.76 0.00 36.81 2.59
3985 4523 7.819900 ACAGTACAGTTCTGAGATTTTGGATAC 59.180 37.037 13.76 0.00 36.81 2.24
3986 4524 8.037758 CAGTACAGTTCTGAGATTTTGGATACT 58.962 37.037 6.83 0.00 35.20 2.12
3988 4526 7.913674 ACAGTTCTGAGATTTTGGATACTTC 57.086 36.000 6.83 0.00 37.61 3.01
3989 4527 7.453393 ACAGTTCTGAGATTTTGGATACTTCA 58.547 34.615 6.83 0.00 37.61 3.02
3990 4528 7.939039 ACAGTTCTGAGATTTTGGATACTTCAA 59.061 33.333 6.83 0.00 37.61 2.69
3991 4529 8.233190 CAGTTCTGAGATTTTGGATACTTCAAC 58.767 37.037 0.00 0.00 37.61 3.18
3994 4532 8.690203 TCTGAGATTTTGGATACTTCAACAAA 57.310 30.769 0.00 0.00 37.61 2.83
3995 4533 9.130661 TCTGAGATTTTGGATACTTCAACAAAA 57.869 29.630 0.00 0.00 44.04 2.44
3996 4534 9.403110 CTGAGATTTTGGATACTTCAACAAAAG 57.597 33.333 0.00 0.00 43.42 2.27
3997 4535 8.359642 TGAGATTTTGGATACTTCAACAAAAGG 58.640 33.333 0.00 0.00 43.42 3.11
3998 4536 8.250143 AGATTTTGGATACTTCAACAAAAGGT 57.750 30.769 0.00 0.00 43.42 3.50
3999 4537 8.360390 AGATTTTGGATACTTCAACAAAAGGTC 58.640 33.333 0.00 0.00 43.42 3.85
4000 4538 5.682943 TTGGATACTTCAACAAAAGGTCG 57.317 39.130 0.00 0.00 37.61 4.79
4001 4539 4.069304 TGGATACTTCAACAAAAGGTCGG 58.931 43.478 0.00 0.00 37.61 4.79
4002 4540 4.202377 TGGATACTTCAACAAAAGGTCGGA 60.202 41.667 0.00 0.00 37.61 4.55
4007 4545 6.702716 ACTTCAACAAAAGGTCGGAAATTA 57.297 33.333 0.00 0.00 0.00 1.40
4008 4546 7.102847 ACTTCAACAAAAGGTCGGAAATTAA 57.897 32.000 0.00 0.00 0.00 1.40
4011 4549 7.519032 TCAACAAAAGGTCGGAAATTAAGAT 57.481 32.000 0.00 0.00 0.00 2.40
4012 4550 7.367285 TCAACAAAAGGTCGGAAATTAAGATG 58.633 34.615 0.00 0.00 0.00 2.90
4038 4725 5.999205 AAATGTGATTATTCTTGTGCCCA 57.001 34.783 0.00 0.00 0.00 5.36
4039 4726 4.989279 ATGTGATTATTCTTGTGCCCAC 57.011 40.909 0.00 0.00 0.00 4.61
4045 4732 1.808411 ATTCTTGTGCCCACGTACAG 58.192 50.000 0.00 0.00 35.89 2.74
4052 4739 0.538118 TGCCCACGTACAGATAACCC 59.462 55.000 0.00 0.00 0.00 4.11
4059 4746 5.509163 CCCACGTACAGATAACCCTAAGATG 60.509 48.000 0.00 0.00 0.00 2.90
4066 4753 7.496346 ACAGATAACCCTAAGATGTTTCTCA 57.504 36.000 0.00 0.00 0.00 3.27
4074 4761 7.234355 ACCCTAAGATGTTTCTCATTTGAAGT 58.766 34.615 0.00 0.00 36.83 3.01
4078 4765 5.766222 AGATGTTTCTCATTTGAAGTGCAC 58.234 37.500 9.40 9.40 36.83 4.57
4089 4776 4.668576 TTGAAGTGCACGATCATTTCTC 57.331 40.909 23.18 7.34 34.85 2.87
4090 4777 3.930336 TGAAGTGCACGATCATTTCTCT 58.070 40.909 20.11 0.00 34.85 3.10
4091 4778 3.681417 TGAAGTGCACGATCATTTCTCTG 59.319 43.478 20.11 0.00 34.85 3.35
4104 4800 9.861138 CGATCATTTCTCTGAAATTAGTTCATC 57.139 33.333 0.00 0.00 45.27 2.92
4110 4806 8.709386 TTCTCTGAAATTAGTTCATCTGTAGC 57.291 34.615 0.00 0.00 45.27 3.58
4130 4826 9.294030 CTGTAGCATTTCATATTTTTGAGTTCC 57.706 33.333 0.00 0.00 0.00 3.62
4147 4846 2.876550 GTTCCAAAGTCAGTACACCACC 59.123 50.000 0.00 0.00 0.00 4.61
4158 4857 5.467735 GTCAGTACACCACCGTTCTAAATTT 59.532 40.000 0.00 0.00 0.00 1.82
4184 4883 6.877611 TGGAGTTGTAGATTTTTGAGTTCC 57.122 37.500 0.00 0.00 0.00 3.62
4185 4884 6.361433 TGGAGTTGTAGATTTTTGAGTTCCA 58.639 36.000 0.00 0.00 0.00 3.53
4188 4887 7.862873 GGAGTTGTAGATTTTTGAGTTCCAAAG 59.137 37.037 0.00 0.00 44.67 2.77
4189 4888 8.293699 AGTTGTAGATTTTTGAGTTCCAAAGT 57.706 30.769 0.00 0.00 44.67 2.66
4190 4889 8.406297 AGTTGTAGATTTTTGAGTTCCAAAGTC 58.594 33.333 0.00 0.00 44.67 3.01
4191 4890 7.873719 TGTAGATTTTTGAGTTCCAAAGTCA 57.126 32.000 0.00 0.00 44.67 3.41
4193 4892 7.556275 TGTAGATTTTTGAGTTCCAAAGTCAGT 59.444 33.333 0.00 0.00 44.67 3.41
4194 4893 9.052759 GTAGATTTTTGAGTTCCAAAGTCAGTA 57.947 33.333 0.00 0.00 44.67 2.74
4195 4894 7.931275 AGATTTTTGAGTTCCAAAGTCAGTAC 58.069 34.615 0.00 0.00 44.67 2.73
4196 4895 7.556275 AGATTTTTGAGTTCCAAAGTCAGTACA 59.444 33.333 0.00 0.00 44.67 2.90
4197 4896 6.431198 TTTTGAGTTCCAAAGTCAGTACAC 57.569 37.500 0.00 0.00 44.67 2.90
4198 4897 4.067972 TGAGTTCCAAAGTCAGTACACC 57.932 45.455 0.00 0.00 35.98 4.16
4199 4898 3.452990 TGAGTTCCAAAGTCAGTACACCA 59.547 43.478 0.00 0.00 35.98 4.17
4200 4899 3.805207 AGTTCCAAAGTCAGTACACCAC 58.195 45.455 0.00 0.00 0.00 4.16
4201 4900 2.876550 GTTCCAAAGTCAGTACACCACC 59.123 50.000 0.00 0.00 0.00 4.61
4202 4901 1.069513 TCCAAAGTCAGTACACCACCG 59.930 52.381 0.00 0.00 0.00 4.94
4203 4902 1.202604 CCAAAGTCAGTACACCACCGT 60.203 52.381 0.00 0.00 0.00 4.83
4218 4917 3.379057 ACCACCGTTTTAACTTTGACCAG 59.621 43.478 0.00 0.00 0.00 4.00
4220 4919 3.018149 ACCGTTTTAACTTTGACCAGCA 58.982 40.909 0.00 0.00 0.00 4.41
4221 4920 3.444388 ACCGTTTTAACTTTGACCAGCAA 59.556 39.130 0.00 0.00 33.88 3.91
4227 4926 7.381139 CGTTTTAACTTTGACCAGCAATACATT 59.619 33.333 0.00 0.00 36.15 2.71
4381 5080 5.886992 ACTTAAGACAAAACCAAACCTTCG 58.113 37.500 10.09 0.00 0.00 3.79
4382 5081 3.793797 AAGACAAAACCAAACCTTCGG 57.206 42.857 0.00 0.00 0.00 4.30
4394 5093 4.986034 CCAAACCTTCGGTTAATTTGGAAC 59.014 41.667 8.08 0.00 46.20 3.62
4406 5105 1.822425 TTTGGAACTGGGGGAGTACA 58.178 50.000 0.00 0.00 33.09 2.90
4408 5107 2.953093 TGGAACTGGGGGAGTACATA 57.047 50.000 0.00 0.00 33.09 2.29
4420 5119 5.011586 GGGGAGTACATAGTACTGGAGATC 58.988 50.000 13.99 0.03 0.00 2.75
4424 5123 7.255660 GGGAGTACATAGTACTGGAGATCAAAG 60.256 44.444 13.99 0.00 0.00 2.77
4426 5125 8.824756 AGTACATAGTACTGGAGATCAAAGAA 57.175 34.615 5.39 0.00 0.00 2.52
4429 5128 8.006298 ACATAGTACTGGAGATCAAAGAAGAG 57.994 38.462 5.39 0.00 0.00 2.85
4430 5129 5.337578 AGTACTGGAGATCAAAGAAGAGC 57.662 43.478 0.00 0.00 0.00 4.09
4448 5147 1.267806 AGCGACCAAAATGTGAAGCTG 59.732 47.619 0.00 0.00 32.44 4.24
4458 5157 2.418368 TGTGAAGCTGGTTGTTCAGT 57.582 45.000 0.00 0.00 37.12 3.41
4464 5163 0.883833 GCTGGTTGTTCAGTGATGGG 59.116 55.000 0.00 0.00 37.12 4.00
4472 5171 4.471904 TGTTCAGTGATGGGATCTACAC 57.528 45.455 0.00 0.00 0.00 2.90
4484 5183 4.202749 TGGGATCTACACCTAATCCGGTAT 60.203 45.833 0.00 0.00 39.95 2.73
4521 5220 0.953727 TCTTGTTGGCACATGTGAGC 59.046 50.000 29.80 14.82 39.30 4.26
4552 5251 4.426416 CCAATATGGTTAAGACGTCGACA 58.574 43.478 17.16 6.54 31.35 4.35
4555 5254 6.362551 CCAATATGGTTAAGACGTCGACATAG 59.637 42.308 17.16 1.48 31.35 2.23
4561 5260 6.309494 TGGTTAAGACGTCGACATAGAAAATG 59.691 38.462 17.16 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.380004 ACAAAAATCCAGCGTTGTCTTCA 59.620 39.130 0.00 0.00 28.08 3.02
1 2 3.964909 ACAAAAATCCAGCGTTGTCTTC 58.035 40.909 0.00 0.00 28.08 2.87
5 6 3.130340 AGTGAACAAAAATCCAGCGTTGT 59.870 39.130 0.00 0.00 35.77 3.32
10 11 6.849588 AATTTCAGTGAACAAAAATCCAGC 57.150 33.333 4.68 0.00 0.00 4.85
37 38 5.758784 ACCTGACTTTCTTTTGCACTACTAC 59.241 40.000 0.00 0.00 0.00 2.73
40 41 5.500645 AACCTGACTTTCTTTTGCACTAC 57.499 39.130 0.00 0.00 0.00 2.73
140 141 2.044758 ACCCTTTAGTTCCTCGTGTGT 58.955 47.619 0.00 0.00 0.00 3.72
141 142 2.833631 ACCCTTTAGTTCCTCGTGTG 57.166 50.000 0.00 0.00 0.00 3.82
142 143 5.485620 GAAATACCCTTTAGTTCCTCGTGT 58.514 41.667 0.00 0.00 0.00 4.49
143 144 4.874396 GGAAATACCCTTTAGTTCCTCGTG 59.126 45.833 3.78 0.00 38.30 4.35
144 145 5.095145 GGAAATACCCTTTAGTTCCTCGT 57.905 43.478 3.78 0.00 38.30 4.18
173 188 1.737793 GGACCAACAATAGCGGTGAAG 59.262 52.381 0.00 0.00 31.63 3.02
214 232 2.579873 CCAGGCTACATTTCCTCATGG 58.420 52.381 0.00 0.00 0.00 3.66
220 238 1.202940 GGGATCCCAGGCTACATTTCC 60.203 57.143 26.95 0.00 35.81 3.13
221 239 1.494721 TGGGATCCCAGGCTACATTTC 59.505 52.381 30.62 0.00 41.89 2.17
222 240 1.607225 TGGGATCCCAGGCTACATTT 58.393 50.000 30.62 0.00 41.89 2.32
223 241 3.357874 TGGGATCCCAGGCTACATT 57.642 52.632 30.62 0.00 41.89 2.71
232 250 3.346734 GGGGTGCTTGGGATCCCA 61.347 66.667 30.62 30.62 45.63 4.37
233 251 4.506255 CGGGGTGCTTGGGATCCC 62.506 72.222 25.22 25.22 39.22 3.85
240 258 4.038080 GTTTCCGCGGGGTGCTTG 62.038 66.667 27.83 0.00 43.27 4.01
249 267 2.627863 TCCAATCATTTGTTTCCGCG 57.372 45.000 0.00 0.00 0.00 6.46
252 270 7.727331 TTTTGACATCCAATCATTTGTTTCC 57.273 32.000 0.00 0.00 34.23 3.13
253 271 8.991026 TGATTTTGACATCCAATCATTTGTTTC 58.009 29.630 2.55 0.00 33.03 2.78
272 290 6.392354 TGCAGCTTTTCTATTCCTGATTTTG 58.608 36.000 0.00 0.00 0.00 2.44
277 301 4.216257 GTGTTGCAGCTTTTCTATTCCTGA 59.784 41.667 1.17 0.00 0.00 3.86
283 307 2.619013 GCGTGTTGCAGCTTTTCTAT 57.381 45.000 1.17 0.00 45.45 1.98
308 332 1.617947 AAGGAGCTGTCGTGGGGATC 61.618 60.000 0.00 0.00 0.00 3.36
350 374 2.360801 GGTGAGGAGTGAGTATCTGCTC 59.639 54.545 7.34 7.34 45.91 4.26
379 403 7.763985 AGGCAAATGTATACAAAAATTAGGTGC 59.236 33.333 10.14 6.60 0.00 5.01
392 416 3.883489 GGACAAGGGAGGCAAATGTATAC 59.117 47.826 0.00 0.00 0.00 1.47
394 418 2.582636 AGGACAAGGGAGGCAAATGTAT 59.417 45.455 0.00 0.00 0.00 2.29
411 440 2.930826 TCAAAGTGTGGAGGAAGGAC 57.069 50.000 0.00 0.00 0.00 3.85
418 447 1.812571 CCGGGAATTCAAAGTGTGGAG 59.187 52.381 7.93 0.00 0.00 3.86
435 464 4.148825 CGGAGGTGAGGAAGCCGG 62.149 72.222 0.00 0.00 38.40 6.13
514 552 1.229853 GGGAGGAGGGTGGGAGAAA 60.230 63.158 0.00 0.00 0.00 2.52
515 553 1.761780 AAGGGAGGAGGGTGGGAGAA 61.762 60.000 0.00 0.00 0.00 2.87
519 561 0.921256 ATTGAAGGGAGGAGGGTGGG 60.921 60.000 0.00 0.00 0.00 4.61
525 567 4.853007 AGAATGACAATTGAAGGGAGGAG 58.147 43.478 13.59 0.00 0.00 3.69
528 570 3.624861 CCGAGAATGACAATTGAAGGGAG 59.375 47.826 13.59 0.00 0.00 4.30
549 591 0.671251 CTAGGCTCGAGTGATGGACC 59.329 60.000 15.13 4.53 0.00 4.46
578 626 3.947910 AGGTTGGTGAAAATGATGCTG 57.052 42.857 0.00 0.00 0.00 4.41
630 678 2.697431 TGGAAATTCCAAGAAACGCG 57.303 45.000 13.04 3.53 45.00 6.01
667 721 4.789012 AAACAAAGATATGGTGCAGGTG 57.211 40.909 0.00 0.00 0.00 4.00
668 722 5.539955 AGAAAAACAAAGATATGGTGCAGGT 59.460 36.000 0.00 0.00 0.00 4.00
669 723 6.029346 AGAAAAACAAAGATATGGTGCAGG 57.971 37.500 0.00 0.00 0.00 4.85
670 724 6.917533 AGAGAAAAACAAAGATATGGTGCAG 58.082 36.000 0.00 0.00 0.00 4.41
685 739 2.070028 GGTGAGGCGAGAGAGAAAAAC 58.930 52.381 0.00 0.00 0.00 2.43
696 750 0.681887 TGAGGATTACGGTGAGGCGA 60.682 55.000 0.00 0.00 0.00 5.54
697 751 0.174845 TTGAGGATTACGGTGAGGCG 59.825 55.000 0.00 0.00 0.00 5.52
714 768 0.179202 TGTCGGCGCGATGAAAATTG 60.179 50.000 12.10 0.00 38.42 2.32
813 875 1.250840 ATCGGGTGCAAAAGGGAAGC 61.251 55.000 0.00 0.00 0.00 3.86
846 921 3.480133 CGGAAAGGGAGCGGGGAT 61.480 66.667 0.00 0.00 0.00 3.85
901 976 1.361668 CCGCAAAGACCATCGGACTG 61.362 60.000 0.00 0.00 44.23 3.51
911 986 1.153958 GCAATCAGGCCGCAAAGAC 60.154 57.895 0.00 0.00 0.00 3.01
981 1056 0.034186 TTTATGGGAGCTGCCACCAG 60.034 55.000 31.00 0.00 42.13 4.00
1003 1096 4.500116 GGACAGCTCCGAGTCCGC 62.500 72.222 5.29 0.00 44.23 5.54
1088 1181 2.125350 GGAGGACAAGGAGCAGCG 60.125 66.667 0.00 0.00 0.00 5.18
1275 1380 2.516225 GGCGTTATGGGGGACTGC 60.516 66.667 0.00 0.00 0.00 4.40
1637 1743 3.749088 TCAACGTTGACAACACTTTCAGT 59.251 39.130 26.53 3.34 31.01 3.41
1638 1744 4.335082 TCAACGTTGACAACACTTTCAG 57.665 40.909 26.53 2.73 31.01 3.02
1677 1834 5.587043 CCATAGCCATTGCAATTCACAAATT 59.413 36.000 9.83 0.00 41.13 1.82
1692 1849 0.979665 CTCGGGTGATCCATAGCCAT 59.020 55.000 1.25 0.00 35.46 4.40
1764 1922 9.926751 CGCATATATATAGAGGCTTTTCAATTG 57.073 33.333 11.73 0.00 0.00 2.32
1784 1942 3.498397 GCACCAATACTAACAGCGCATAT 59.502 43.478 11.47 0.00 0.00 1.78
1785 1943 2.869801 GCACCAATACTAACAGCGCATA 59.130 45.455 11.47 0.00 0.00 3.14
1786 1944 1.670811 GCACCAATACTAACAGCGCAT 59.329 47.619 11.47 0.00 0.00 4.73
1787 1945 1.083489 GCACCAATACTAACAGCGCA 58.917 50.000 11.47 0.00 0.00 6.09
1788 1946 0.377203 GGCACCAATACTAACAGCGC 59.623 55.000 0.00 0.00 0.00 5.92
1789 1947 0.650512 CGGCACCAATACTAACAGCG 59.349 55.000 0.00 0.00 0.00 5.18
1790 1948 1.014352 CCGGCACCAATACTAACAGC 58.986 55.000 0.00 0.00 0.00 4.40
1791 1949 2.277084 GTCCGGCACCAATACTAACAG 58.723 52.381 0.00 0.00 0.00 3.16
1792 1950 1.404449 CGTCCGGCACCAATACTAACA 60.404 52.381 0.00 0.00 0.00 2.41
1793 1951 1.283736 CGTCCGGCACCAATACTAAC 58.716 55.000 0.00 0.00 0.00 2.34
1794 1952 0.460635 GCGTCCGGCACCAATACTAA 60.461 55.000 0.00 0.00 42.87 2.24
1795 1953 1.142314 GCGTCCGGCACCAATACTA 59.858 57.895 0.00 0.00 42.87 1.82
1796 1954 2.125269 GCGTCCGGCACCAATACT 60.125 61.111 0.00 0.00 42.87 2.12
1805 1963 4.819761 TCTCATGCAGCGTCCGGC 62.820 66.667 0.00 0.00 44.05 6.13
1806 1964 2.584418 CTCTCATGCAGCGTCCGG 60.584 66.667 0.00 0.00 0.00 5.14
1807 1965 3.260483 GCTCTCATGCAGCGTCCG 61.260 66.667 0.00 0.00 0.00 4.79
1808 1966 2.172372 CAGCTCTCATGCAGCGTCC 61.172 63.158 9.96 0.00 42.14 4.79
1809 1967 2.811066 GCAGCTCTCATGCAGCGTC 61.811 63.158 9.96 3.97 43.31 5.19
1810 1968 2.818714 GCAGCTCTCATGCAGCGT 60.819 61.111 9.96 0.00 43.31 5.07
1844 2042 4.643463 TGGCTACGAACATACCTGAAAAA 58.357 39.130 0.00 0.00 0.00 1.94
1845 2043 4.250464 CTGGCTACGAACATACCTGAAAA 58.750 43.478 0.00 0.00 0.00 2.29
1879 2077 2.227865 GCAGCGTCCCTCAATTAAAACA 59.772 45.455 0.00 0.00 0.00 2.83
1908 2106 3.017323 CGATTGATGGCACGGAGC 58.983 61.111 0.00 0.00 44.65 4.70
1909 2107 2.537560 GGCGATTGATGGCACGGAG 61.538 63.158 0.00 0.00 32.78 4.63
1910 2108 2.513666 GGCGATTGATGGCACGGA 60.514 61.111 0.00 0.00 32.78 4.69
1911 2109 2.514592 AGGCGATTGATGGCACGG 60.515 61.111 0.00 0.00 32.78 4.94
1912 2110 2.711311 CAGGCGATTGATGGCACG 59.289 61.111 0.00 0.00 32.78 5.34
1913 2111 3.113745 CCAGGCGATTGATGGCAC 58.886 61.111 0.00 0.00 32.78 5.01
1916 2114 1.153107 TGAGCCAGGCGATTGATGG 60.153 57.895 5.55 1.11 37.15 3.51
1948 2146 0.955428 TTCATCGAGCAGTTGTGGCC 60.955 55.000 0.00 0.00 0.00 5.36
1952 2433 1.129251 CGCATTTCATCGAGCAGTTGT 59.871 47.619 0.00 0.00 0.00 3.32
1972 2453 9.416794 CTGTCCTTGTCATAATATCTGTCATAC 57.583 37.037 0.00 0.00 0.00 2.39
1978 2463 6.042552 ACCCTCTGTCCTTGTCATAATATCTG 59.957 42.308 0.00 0.00 0.00 2.90
1985 2472 4.229812 TCTCTACCCTCTGTCCTTGTCATA 59.770 45.833 0.00 0.00 0.00 2.15
2013 2518 0.957395 GGTCATCACACACCTGGCAG 60.957 60.000 7.75 7.75 0.00 4.85
2025 2539 2.557924 GCATGGTTTTGACAGGTCATCA 59.442 45.455 2.52 1.22 39.64 3.07
2083 2600 8.187354 TCAACTTTTTAAACCGGACATTTTTC 57.813 30.769 9.46 0.00 0.00 2.29
2123 2640 4.965283 TTTGTCCCTTAATCCCCAATCT 57.035 40.909 0.00 0.00 0.00 2.40
2157 2674 9.939802 AACTATTTTTAGTCCGTCAACTAATCT 57.060 29.630 3.93 0.00 40.46 2.40
2245 2762 7.473027 ACAAAATTTCATCAGTTTGAGCAAG 57.527 32.000 1.00 0.00 35.44 4.01
2248 2765 9.213819 GAAAAACAAAATTTCATCAGTTTGAGC 57.786 29.630 1.00 0.00 36.89 4.26
2268 2785 6.923508 CCCCTAACAAAGTCATCAAGAAAAAC 59.076 38.462 0.00 0.00 0.00 2.43
2269 2786 6.041523 CCCCCTAACAAAGTCATCAAGAAAAA 59.958 38.462 0.00 0.00 0.00 1.94
2279 2796 0.404040 CCTGCCCCCTAACAAAGTCA 59.596 55.000 0.00 0.00 0.00 3.41
2280 2797 0.965866 GCCTGCCCCCTAACAAAGTC 60.966 60.000 0.00 0.00 0.00 3.01
2281 2798 1.076727 GCCTGCCCCCTAACAAAGT 59.923 57.895 0.00 0.00 0.00 2.66
2282 2799 2.046285 CGCCTGCCCCCTAACAAAG 61.046 63.158 0.00 0.00 0.00 2.77
2283 2800 2.034999 CGCCTGCCCCCTAACAAA 59.965 61.111 0.00 0.00 0.00 2.83
2375 2892 1.153289 CTGATTCCCCTCGGCACAG 60.153 63.158 0.00 0.00 0.00 3.66
2414 2931 6.982141 CAGCAAGGTAATCAAATAATGTGCAT 59.018 34.615 0.00 0.00 0.00 3.96
2513 3030 6.342111 TGCCATTATCAACATACTCGTACAA 58.658 36.000 0.00 0.00 0.00 2.41
2533 3050 0.392336 GCCATTGTTCCAAGTTGCCA 59.608 50.000 0.00 0.00 0.00 4.92
2596 3113 6.336566 CGTCCCTAATATGATCTTCATCCTG 58.663 44.000 0.00 0.00 38.26 3.86
2612 3129 0.250989 CACCCTTTTGCCGTCCCTAA 60.251 55.000 0.00 0.00 0.00 2.69
2620 3137 0.809636 GCAACACACACCCTTTTGCC 60.810 55.000 0.00 0.00 37.24 4.52
2632 3149 2.813754 GTTATCCAAGCTGAGCAACACA 59.186 45.455 7.39 0.00 0.00 3.72
2672 3189 4.495422 AGATGTTTACGTGACTAGGCAAG 58.505 43.478 10.26 10.26 0.00 4.01
2921 3438 9.146586 AGTAACCACAAATTCATGCCATATTAT 57.853 29.630 0.00 0.00 0.00 1.28
2926 3443 6.849085 TTAGTAACCACAAATTCATGCCAT 57.151 33.333 0.00 0.00 0.00 4.40
2938 3455 8.226819 TGATCAACAACAAATTAGTAACCACA 57.773 30.769 0.00 0.00 0.00 4.17
2982 3499 2.808206 CCCAGTCCCCGCATACTCC 61.808 68.421 0.00 0.00 0.00 3.85
3009 3526 9.702726 CCAAAACTATATACATCACTTGTTTCG 57.297 33.333 0.00 0.00 39.87 3.46
3093 3610 2.233922 ACACCAATGACTAACCTCTCCG 59.766 50.000 0.00 0.00 0.00 4.63
3105 3622 2.779755 ATACGAAGGCACACCAATGA 57.220 45.000 0.00 0.00 39.06 2.57
3106 3623 2.287915 GCTATACGAAGGCACACCAATG 59.712 50.000 0.00 0.00 39.06 2.82
3111 3628 2.311124 AAGGCTATACGAAGGCACAC 57.689 50.000 11.76 0.00 44.19 3.82
3116 3633 4.792521 AGCTCATAAGGCTATACGAAGG 57.207 45.455 0.00 0.00 38.36 3.46
3120 3637 7.622256 GCATTAACAAGCTCATAAGGCTATACG 60.622 40.741 12.62 0.00 39.30 3.06
3194 3722 8.740123 TGTCTTCAACCAATCAACTAAGTTTA 57.260 30.769 0.00 0.00 0.00 2.01
3198 3726 7.086376 CCATTGTCTTCAACCAATCAACTAAG 58.914 38.462 0.00 0.00 36.33 2.18
3232 3760 1.421646 CACAACCCCCTCAGAGTTTCT 59.578 52.381 0.00 0.00 0.00 2.52
3327 3855 0.254178 GCCTCTTGGAAGCATCAGGA 59.746 55.000 0.00 0.00 34.57 3.86
3409 3937 8.275040 ACTTAGGAATGTATGCCTTTATTGACT 58.725 33.333 0.00 0.00 35.73 3.41
3434 3962 6.690530 TGTCCAGATGAAATGAAAATCCAAC 58.309 36.000 0.00 0.00 0.00 3.77
3435 3963 6.914654 TGTCCAGATGAAATGAAAATCCAA 57.085 33.333 0.00 0.00 0.00 3.53
3449 3977 6.695713 TCTTTACGATCGTAAATGTCCAGATG 59.304 38.462 38.99 27.79 45.71 2.90
3578 4106 7.118060 TGTCAATTTCACCATCATCTATTCCA 58.882 34.615 0.00 0.00 0.00 3.53
3593 4121 2.955660 GTCCCCACTGTTGTCAATTTCA 59.044 45.455 0.00 0.00 0.00 2.69
3615 4143 1.210967 TCTGAAAGGTTGGTCGTGGTT 59.789 47.619 0.00 0.00 0.00 3.67
3616 4144 0.834612 TCTGAAAGGTTGGTCGTGGT 59.165 50.000 0.00 0.00 0.00 4.16
3617 4145 1.806542 CATCTGAAAGGTTGGTCGTGG 59.193 52.381 0.00 0.00 0.00 4.94
3620 4148 2.472695 TCCATCTGAAAGGTTGGTCG 57.527 50.000 0.31 0.00 38.35 4.79
3658 4186 7.094720 CCACATAATTTGGTAACCGAACAAGTA 60.095 37.037 0.00 0.00 28.54 2.24
3660 4188 6.072397 TCCACATAATTTGGTAACCGAACAAG 60.072 38.462 0.00 0.00 35.42 3.16
3667 4195 4.160814 GGGGTTCCACATAATTTGGTAACC 59.839 45.833 14.46 14.46 39.90 2.85
3706 4234 0.676782 GCGGCTTCACCAGGTATTGT 60.677 55.000 0.00 0.00 39.03 2.71
3729 4257 8.397906 CCGTGAATCACACTAAAATAATGACAT 58.602 33.333 14.24 0.00 46.24 3.06
3747 4275 3.243877 CGATGTGATGTTCTCCGTGAATC 59.756 47.826 0.00 0.00 36.99 2.52
3749 4277 2.230266 TCGATGTGATGTTCTCCGTGAA 59.770 45.455 0.00 0.00 0.00 3.18
3750 4278 1.816224 TCGATGTGATGTTCTCCGTGA 59.184 47.619 0.00 0.00 0.00 4.35
3753 4281 3.190079 ACATTCGATGTGATGTTCTCCG 58.810 45.455 5.44 0.00 43.01 4.63
3785 4313 9.725206 AATCAGGGATTACTACTACTTTCCTTA 57.275 33.333 0.00 0.00 29.72 2.69
3806 4343 8.915057 ACATCTCCAGTTGGATAAATAATCAG 57.085 34.615 0.48 0.00 44.46 2.90
3822 4359 7.864379 GGCATTATCATGTAAAAACATCTCCAG 59.136 37.037 0.00 0.00 32.28 3.86
3847 4384 9.672086 TTTCGTTGTTAACTTAAAAGATCATGG 57.328 29.630 7.22 0.00 0.00 3.66
3870 4408 3.127030 CCGTCTGAGGGCTTTAACATTTC 59.873 47.826 3.11 0.00 0.00 2.17
3871 4409 3.081804 CCGTCTGAGGGCTTTAACATTT 58.918 45.455 3.11 0.00 0.00 2.32
3913 4451 4.043200 GGGCAAGTCACAAGCGCC 62.043 66.667 2.29 0.00 42.21 6.53
3917 4455 1.517242 GAGTCAGGGCAAGTCACAAG 58.483 55.000 0.00 0.00 0.00 3.16
3929 4467 2.083835 AACACGGTGTCGGAGTCAGG 62.084 60.000 15.09 0.00 41.39 3.86
3944 4482 9.807386 GAACTGTACTGTAAATAATGACAACAC 57.193 33.333 5.76 0.00 0.00 3.32
3948 4486 9.639601 CTCAGAACTGTACTGTAAATAATGACA 57.360 33.333 5.76 0.00 36.81 3.58
3949 4487 9.856488 TCTCAGAACTGTACTGTAAATAATGAC 57.144 33.333 5.76 0.00 36.81 3.06
3955 4493 9.003658 CCAAAATCTCAGAACTGTACTGTAAAT 57.996 33.333 5.76 0.00 36.81 1.40
3958 4496 7.297936 TCCAAAATCTCAGAACTGTACTGTA 57.702 36.000 5.76 0.00 36.81 2.74
3962 4500 8.779354 AAGTATCCAAAATCTCAGAACTGTAC 57.221 34.615 1.73 0.00 0.00 2.90
3964 4502 7.453393 TGAAGTATCCAAAATCTCAGAACTGT 58.547 34.615 1.73 0.00 0.00 3.55
3965 4503 7.912056 TGAAGTATCCAAAATCTCAGAACTG 57.088 36.000 0.00 0.00 0.00 3.16
3967 4505 8.099364 TGTTGAAGTATCCAAAATCTCAGAAC 57.901 34.615 0.00 0.00 0.00 3.01
3968 4506 8.690203 TTGTTGAAGTATCCAAAATCTCAGAA 57.310 30.769 0.00 0.00 0.00 3.02
3969 4507 8.690203 TTTGTTGAAGTATCCAAAATCTCAGA 57.310 30.769 0.00 0.00 0.00 3.27
3970 4508 9.403110 CTTTTGTTGAAGTATCCAAAATCTCAG 57.597 33.333 0.00 0.00 36.52 3.35
3971 4509 8.359642 CCTTTTGTTGAAGTATCCAAAATCTCA 58.640 33.333 0.00 0.00 36.52 3.27
3972 4510 8.360390 ACCTTTTGTTGAAGTATCCAAAATCTC 58.640 33.333 0.00 0.00 36.52 2.75
3973 4511 8.250143 ACCTTTTGTTGAAGTATCCAAAATCT 57.750 30.769 0.00 0.00 36.52 2.40
3974 4512 7.326063 CGACCTTTTGTTGAAGTATCCAAAATC 59.674 37.037 0.00 0.00 36.52 2.17
3975 4513 7.145323 CGACCTTTTGTTGAAGTATCCAAAAT 58.855 34.615 0.00 0.00 36.52 1.82
3976 4514 6.460399 CCGACCTTTTGTTGAAGTATCCAAAA 60.460 38.462 0.00 0.00 35.95 2.44
3977 4515 5.009210 CCGACCTTTTGTTGAAGTATCCAAA 59.991 40.000 0.00 0.00 0.00 3.28
3980 4518 4.320870 TCCGACCTTTTGTTGAAGTATCC 58.679 43.478 0.00 0.00 0.00 2.59
3981 4519 5.934935 TTCCGACCTTTTGTTGAAGTATC 57.065 39.130 0.00 0.00 0.00 2.24
3982 4520 6.894339 ATTTCCGACCTTTTGTTGAAGTAT 57.106 33.333 0.00 0.00 0.00 2.12
3983 4521 6.702716 AATTTCCGACCTTTTGTTGAAGTA 57.297 33.333 0.00 0.00 0.00 2.24
3984 4522 5.592104 AATTTCCGACCTTTTGTTGAAGT 57.408 34.783 0.00 0.00 0.00 3.01
3985 4523 7.422399 TCTTAATTTCCGACCTTTTGTTGAAG 58.578 34.615 0.00 0.00 0.00 3.02
3986 4524 7.336161 TCTTAATTTCCGACCTTTTGTTGAA 57.664 32.000 0.00 0.00 0.00 2.69
3988 4526 7.145323 ACATCTTAATTTCCGACCTTTTGTTG 58.855 34.615 0.00 0.00 0.00 3.33
3989 4527 7.284919 ACATCTTAATTTCCGACCTTTTGTT 57.715 32.000 0.00 0.00 0.00 2.83
3990 4528 6.894339 ACATCTTAATTTCCGACCTTTTGT 57.106 33.333 0.00 0.00 0.00 2.83
3991 4529 9.685828 TTTTACATCTTAATTTCCGACCTTTTG 57.314 29.630 0.00 0.00 0.00 2.44
3994 4532 9.855021 CATTTTTACATCTTAATTTCCGACCTT 57.145 29.630 0.00 0.00 0.00 3.50
3995 4533 9.020731 ACATTTTTACATCTTAATTTCCGACCT 57.979 29.630 0.00 0.00 0.00 3.85
3996 4534 9.072294 CACATTTTTACATCTTAATTTCCGACC 57.928 33.333 0.00 0.00 0.00 4.79
3997 4535 9.834628 TCACATTTTTACATCTTAATTTCCGAC 57.165 29.630 0.00 0.00 0.00 4.79
4011 4549 7.816995 GGGCACAAGAATAATCACATTTTTACA 59.183 33.333 0.00 0.00 0.00 2.41
4012 4550 7.816995 TGGGCACAAGAATAATCACATTTTTAC 59.183 33.333 0.00 0.00 0.00 2.01
4030 4717 2.613474 GGTTATCTGTACGTGGGCACAA 60.613 50.000 0.00 0.00 0.00 3.33
4038 4725 6.786967 AACATCTTAGGGTTATCTGTACGT 57.213 37.500 0.00 0.00 0.00 3.57
4039 4726 7.490000 AGAAACATCTTAGGGTTATCTGTACG 58.510 38.462 0.00 0.00 0.00 3.67
4045 4732 9.396022 TCAAATGAGAAACATCTTAGGGTTATC 57.604 33.333 0.00 0.00 38.38 1.75
4052 4739 7.536622 GTGCACTTCAAATGAGAAACATCTTAG 59.463 37.037 10.32 0.00 38.38 2.18
4059 4746 4.209452 TCGTGCACTTCAAATGAGAAAC 57.791 40.909 16.19 0.00 0.00 2.78
4066 4753 5.413833 AGAGAAATGATCGTGCACTTCAAAT 59.586 36.000 19.26 12.77 0.00 2.32
4074 4761 5.885230 AATTTCAGAGAAATGATCGTGCA 57.115 34.783 5.81 0.00 0.00 4.57
4104 4800 9.294030 GGAACTCAAAAATATGAAATGCTACAG 57.706 33.333 0.00 0.00 0.00 2.74
4125 4821 3.433173 GGTGGTGTACTGACTTTGGAACT 60.433 47.826 0.00 0.00 0.00 3.01
4126 4822 2.876550 GGTGGTGTACTGACTTTGGAAC 59.123 50.000 0.00 0.00 0.00 3.62
4127 4823 2.484065 CGGTGGTGTACTGACTTTGGAA 60.484 50.000 0.00 0.00 37.93 3.53
4129 4825 1.202604 ACGGTGGTGTACTGACTTTGG 60.203 52.381 0.00 0.00 39.08 3.28
4130 4826 2.234300 ACGGTGGTGTACTGACTTTG 57.766 50.000 0.00 0.00 39.08 2.77
4158 4857 9.010029 GGAACTCAAAAATCTACAACTCCAATA 57.990 33.333 0.00 0.00 0.00 1.90
4174 4873 5.355910 GGTGTACTGACTTTGGAACTCAAAA 59.644 40.000 0.00 0.00 43.88 2.44
4176 4875 4.080807 TGGTGTACTGACTTTGGAACTCAA 60.081 41.667 0.00 0.00 0.00 3.02
4178 4877 3.808174 GTGGTGTACTGACTTTGGAACTC 59.192 47.826 0.00 0.00 0.00 3.01
4181 4880 2.484065 CGGTGGTGTACTGACTTTGGAA 60.484 50.000 0.00 0.00 37.93 3.53
4182 4881 1.069513 CGGTGGTGTACTGACTTTGGA 59.930 52.381 0.00 0.00 37.93 3.53
4183 4882 1.202604 ACGGTGGTGTACTGACTTTGG 60.203 52.381 0.00 0.00 39.08 3.28
4184 4883 2.234300 ACGGTGGTGTACTGACTTTG 57.766 50.000 0.00 0.00 39.08 2.77
4185 4884 2.994186 AACGGTGGTGTACTGACTTT 57.006 45.000 0.00 0.00 39.08 2.66
4188 4887 4.122046 AGTTAAAACGGTGGTGTACTGAC 58.878 43.478 0.00 0.00 39.08 3.51
4189 4888 4.405116 AGTTAAAACGGTGGTGTACTGA 57.595 40.909 0.00 0.00 39.08 3.41
4190 4889 5.064962 TCAAAGTTAAAACGGTGGTGTACTG 59.935 40.000 0.00 0.00 41.64 2.74
4191 4890 5.065090 GTCAAAGTTAAAACGGTGGTGTACT 59.935 40.000 0.00 0.00 0.00 2.73
4193 4892 4.335037 GGTCAAAGTTAAAACGGTGGTGTA 59.665 41.667 0.00 0.00 0.00 2.90
4194 4893 3.129113 GGTCAAAGTTAAAACGGTGGTGT 59.871 43.478 0.00 0.00 0.00 4.16
4195 4894 3.128938 TGGTCAAAGTTAAAACGGTGGTG 59.871 43.478 0.00 0.00 0.00 4.17
4196 4895 3.354467 TGGTCAAAGTTAAAACGGTGGT 58.646 40.909 0.00 0.00 0.00 4.16
4197 4896 3.794138 GCTGGTCAAAGTTAAAACGGTGG 60.794 47.826 0.00 0.00 0.00 4.61
4198 4897 3.181495 TGCTGGTCAAAGTTAAAACGGTG 60.181 43.478 0.00 0.00 0.00 4.94
4199 4898 3.018149 TGCTGGTCAAAGTTAAAACGGT 58.982 40.909 0.00 0.00 0.00 4.83
4200 4899 3.701532 TGCTGGTCAAAGTTAAAACGG 57.298 42.857 0.00 0.00 0.00 4.44
4201 4900 6.202937 TGTATTGCTGGTCAAAGTTAAAACG 58.797 36.000 0.00 0.00 38.34 3.60
4202 4901 8.587952 AATGTATTGCTGGTCAAAGTTAAAAC 57.412 30.769 0.00 0.00 38.34 2.43
4357 5056 6.327154 CGAAGGTTTGGTTTTGTCTTAAGTT 58.673 36.000 1.63 0.00 0.00 2.66
4381 5080 3.096852 CTCCCCCAGTTCCAAATTAACC 58.903 50.000 0.00 0.00 0.00 2.85
4382 5081 3.774734 ACTCCCCCAGTTCCAAATTAAC 58.225 45.455 0.00 0.00 26.56 2.01
4394 5093 3.117246 TCCAGTACTATGTACTCCCCCAG 60.117 52.174 7.34 0.00 0.00 4.45
4406 5105 6.238897 CGCTCTTCTTTGATCTCCAGTACTAT 60.239 42.308 0.00 0.00 0.00 2.12
4408 5107 4.142271 CGCTCTTCTTTGATCTCCAGTACT 60.142 45.833 0.00 0.00 0.00 2.73
4420 5119 3.976942 CACATTTTGGTCGCTCTTCTTTG 59.023 43.478 0.00 0.00 0.00 2.77
4424 5123 3.814945 CTTCACATTTTGGTCGCTCTTC 58.185 45.455 0.00 0.00 0.00 2.87
4426 5125 1.537202 GCTTCACATTTTGGTCGCTCT 59.463 47.619 0.00 0.00 0.00 4.09
4429 5128 1.666888 CCAGCTTCACATTTTGGTCGC 60.667 52.381 0.00 0.00 0.00 5.19
4430 5129 1.608590 ACCAGCTTCACATTTTGGTCG 59.391 47.619 0.00 0.00 37.60 4.79
4448 5147 3.356529 AGATCCCATCACTGAACAACC 57.643 47.619 0.00 0.00 0.00 3.77
4458 5157 3.832490 CGGATTAGGTGTAGATCCCATCA 59.168 47.826 0.00 0.00 36.76 3.07
4464 5163 7.387122 GGAAAAATACCGGATTAGGTGTAGATC 59.613 40.741 9.46 0.00 45.54 2.75
4472 5171 7.165460 ACAAAAGGAAAAATACCGGATTAGG 57.835 36.000 9.46 0.00 37.30 2.69
4484 5183 5.555966 ACAAGAAGGCAACAAAAGGAAAAA 58.444 33.333 0.00 0.00 41.41 1.94
4555 5254 8.037166 AGGCACCATCTATTTCTTTTCATTTTC 58.963 33.333 0.00 0.00 0.00 2.29
4561 5260 4.440663 GGCAGGCACCATCTATTTCTTTTC 60.441 45.833 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.