Multiple sequence alignment - TraesCS2A01G154100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G154100 chr2A 100.000 2406 0 0 1 2406 101844448 101846853 0.000000e+00 4444.0
1 TraesCS2A01G154100 chr2A 90.196 51 4 1 2357 2406 769218704 769218654 5.550000e-07 65.8
2 TraesCS2A01G154100 chr2A 100.000 33 0 0 2181 2213 136115846 136115814 7.180000e-06 62.1
3 TraesCS2A01G154100 chr2A 97.143 35 1 0 2018 2052 67713281 67713315 2.580000e-05 60.2
4 TraesCS2A01G154100 chr2A 94.286 35 2 0 2018 2052 67978589 67978623 1.000000e-03 54.7
5 TraesCS2A01G154100 chr2D 90.491 1325 65 19 670 1965 102800934 102802226 0.000000e+00 1692.0
6 TraesCS2A01G154100 chr2D 89.268 205 19 3 2127 2329 102802342 102802545 1.100000e-63 254.0
7 TraesCS2A01G154100 chr2D 100.000 33 0 0 2181 2213 129344088 129344056 7.180000e-06 62.1
8 TraesCS2A01G154100 chr2D 97.143 35 1 0 2018 2052 66870042 66870008 2.580000e-05 60.2
9 TraesCS2A01G154100 chr2D 80.233 86 7 10 2051 2128 608027311 608027228 3.340000e-04 56.5
10 TraesCS2A01G154100 chr2B 88.881 1358 84 31 672 1970 154139672 154141021 0.000000e+00 1609.0
11 TraesCS2A01G154100 chr2B 90.789 152 12 2 2226 2377 154141571 154141720 4.060000e-48 202.0
12 TraesCS2A01G154100 chr2B 97.143 35 1 0 2018 2052 104578950 104578984 2.580000e-05 60.2
13 TraesCS2A01G154100 chr7A 91.831 661 51 3 6 665 662117187 662116529 0.000000e+00 918.0
14 TraesCS2A01G154100 chr7A 93.478 46 2 1 2362 2406 714898133 714898088 1.540000e-07 67.6
15 TraesCS2A01G154100 chr4B 89.410 661 70 0 3 663 404008354 404009014 0.000000e+00 833.0
16 TraesCS2A01G154100 chr6D 90.833 600 55 0 66 665 267204033 267203434 0.000000e+00 804.0
17 TraesCS2A01G154100 chr4A 88.235 663 76 2 3 665 701900538 701901198 0.000000e+00 791.0
18 TraesCS2A01G154100 chrUn 88.102 664 78 1 3 665 74745523 74744860 0.000000e+00 787.0
19 TraesCS2A01G154100 chrUn 91.667 48 2 1 2359 2406 305213117 305213162 5.550000e-07 65.8
20 TraesCS2A01G154100 chr3B 87.179 663 81 2 3 665 636747475 636748133 0.000000e+00 750.0
21 TraesCS2A01G154100 chr3B 85.997 657 92 0 9 665 729740678 729741334 0.000000e+00 704.0
22 TraesCS2A01G154100 chr3B 88.525 61 3 3 2349 2406 177503747 177503806 1.190000e-08 71.3
23 TraesCS2A01G154100 chr6B 84.766 768 73 26 905 1633 79855494 79854732 0.000000e+00 730.0
24 TraesCS2A01G154100 chr6B 100.000 32 0 0 2051 2082 25612782 25612751 2.580000e-05 60.2
25 TraesCS2A01G154100 chr3D 85.954 655 90 2 9 663 604571646 604572298 0.000000e+00 699.0
26 TraesCS2A01G154100 chr6A 82.448 866 83 42 798 1633 46702833 46703659 0.000000e+00 693.0
27 TraesCS2A01G154100 chr6A 100.000 32 0 0 2051 2082 356112245 356112276 2.580000e-05 60.2
28 TraesCS2A01G154100 chr6A 93.023 43 0 3 2052 2093 552171459 552171499 2.580000e-05 60.2
29 TraesCS2A01G154100 chr5A 85.474 654 92 3 9 662 158651725 158651075 0.000000e+00 678.0
30 TraesCS2A01G154100 chr5A 91.837 49 1 3 2361 2406 625674124 625674172 5.550000e-07 65.8
31 TraesCS2A01G154100 chr1B 88.525 61 3 4 2349 2406 348322662 348322721 1.190000e-08 71.3
32 TraesCS2A01G154100 chr1B 90.000 50 3 2 2359 2406 255504009 255503960 2.000000e-06 63.9
33 TraesCS2A01G154100 chr1B 100.000 31 0 0 2376 2406 564166129 564166099 9.290000e-05 58.4
34 TraesCS2A01G154100 chr5B 97.436 39 1 0 2014 2052 119509762 119509724 1.540000e-07 67.6
35 TraesCS2A01G154100 chr5B 81.481 81 9 4 2052 2130 479643614 479643538 7.180000e-06 62.1
36 TraesCS2A01G154100 chr5B 100.000 32 0 0 2051 2082 582158136 582158167 2.580000e-05 60.2
37 TraesCS2A01G154100 chr5B 97.222 36 0 1 2050 2084 661232213 661232248 2.580000e-05 60.2
38 TraesCS2A01G154100 chr4D 97.436 39 1 0 2014 2052 93562565 93562603 1.540000e-07 67.6
39 TraesCS2A01G154100 chr1A 93.478 46 2 1 2362 2406 412533698 412533743 1.540000e-07 67.6
40 TraesCS2A01G154100 chr1A 93.023 43 0 3 2052 2093 593649265 593649305 2.580000e-05 60.2
41 TraesCS2A01G154100 chr5D 100.000 29 0 0 2051 2079 61414277 61414305 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G154100 chr2A 101844448 101846853 2405 False 4444.0 4444 100.0000 1 2406 1 chr2A.!!$F3 2405
1 TraesCS2A01G154100 chr2D 102800934 102802545 1611 False 973.0 1692 89.8795 670 2329 2 chr2D.!!$F1 1659
2 TraesCS2A01G154100 chr2B 154139672 154141720 2048 False 905.5 1609 89.8350 672 2377 2 chr2B.!!$F2 1705
3 TraesCS2A01G154100 chr7A 662116529 662117187 658 True 918.0 918 91.8310 6 665 1 chr7A.!!$R1 659
4 TraesCS2A01G154100 chr4B 404008354 404009014 660 False 833.0 833 89.4100 3 663 1 chr4B.!!$F1 660
5 TraesCS2A01G154100 chr6D 267203434 267204033 599 True 804.0 804 90.8330 66 665 1 chr6D.!!$R1 599
6 TraesCS2A01G154100 chr4A 701900538 701901198 660 False 791.0 791 88.2350 3 665 1 chr4A.!!$F1 662
7 TraesCS2A01G154100 chrUn 74744860 74745523 663 True 787.0 787 88.1020 3 665 1 chrUn.!!$R1 662
8 TraesCS2A01G154100 chr3B 636747475 636748133 658 False 750.0 750 87.1790 3 665 1 chr3B.!!$F2 662
9 TraesCS2A01G154100 chr3B 729740678 729741334 656 False 704.0 704 85.9970 9 665 1 chr3B.!!$F3 656
10 TraesCS2A01G154100 chr6B 79854732 79855494 762 True 730.0 730 84.7660 905 1633 1 chr6B.!!$R2 728
11 TraesCS2A01G154100 chr3D 604571646 604572298 652 False 699.0 699 85.9540 9 663 1 chr3D.!!$F1 654
12 TraesCS2A01G154100 chr6A 46702833 46703659 826 False 693.0 693 82.4480 798 1633 1 chr6A.!!$F1 835
13 TraesCS2A01G154100 chr5A 158651075 158651725 650 True 678.0 678 85.4740 9 662 1 chr5A.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 848 0.466555 AAGTGTAAACAAGCCGGCCA 60.467 50.0 26.15 9.34 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2218 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.063942 TCCTCTCCAGCGTCCTGATTA 60.064 52.381 0.00 0.00 41.77 1.75
43 44 0.613853 TACTCAGTTGGTCTCCCCCG 60.614 60.000 0.00 0.00 0.00 5.73
134 135 1.971167 GGTTGCTTGCCCATCGTCA 60.971 57.895 0.00 0.00 0.00 4.35
153 154 1.876156 CACAGAGAACTTTCCACTGGC 59.124 52.381 14.20 0.00 36.84 4.85
209 215 1.072331 ACACTTCTCCATTTGCGTCCT 59.928 47.619 0.00 0.00 0.00 3.85
247 253 1.151668 CTCAGTTTCCACAAGCTCCG 58.848 55.000 0.00 0.00 0.00 4.63
248 254 0.468226 TCAGTTTCCACAAGCTCCGT 59.532 50.000 0.00 0.00 0.00 4.69
281 287 4.305989 TGTTGTCAGATTCAAAACAGCC 57.694 40.909 0.00 0.00 0.00 4.85
454 462 4.731313 AACAGGAAGGATCTTCCACTTT 57.269 40.909 23.61 12.93 39.61 2.66
545 553 7.451255 TGAATGTTCTGTGGACATAGGATTTTT 59.549 33.333 0.00 0.00 0.00 1.94
579 587 4.621769 ACTAACACTAGAAGCTACCCCAT 58.378 43.478 0.00 0.00 0.00 4.00
665 673 1.351017 GGGGTGTCCACTTCATCTGAA 59.649 52.381 0.00 0.00 35.00 3.02
666 674 2.224769 GGGGTGTCCACTTCATCTGAAA 60.225 50.000 0.00 0.00 32.47 2.69
667 675 3.486383 GGGTGTCCACTTCATCTGAAAA 58.514 45.455 0.00 0.00 33.07 2.29
668 676 3.253432 GGGTGTCCACTTCATCTGAAAAC 59.747 47.826 0.00 0.00 33.07 2.43
694 702 9.605955 CAATTTTTATTCGATTTTCCCAAAACC 57.394 29.630 0.00 0.00 32.37 3.27
770 778 3.149196 AGGTGTTTCCGACGAGTAGTAA 58.851 45.455 0.00 0.00 41.99 2.24
819 848 0.466555 AAGTGTAAACAAGCCGGCCA 60.467 50.000 26.15 9.34 0.00 5.36
821 850 1.602323 TGTAAACAAGCCGGCCAGG 60.602 57.895 26.15 15.84 44.97 4.45
916 948 1.383456 CCAGTGAGAGAGCCCGAGAG 61.383 65.000 0.00 0.00 0.00 3.20
1202 1252 2.493501 GTACGGCCGTCCTCTTCC 59.506 66.667 38.01 11.09 0.00 3.46
1210 1260 1.035932 CCGTCCTCTTCCCTTCGCTA 61.036 60.000 0.00 0.00 0.00 4.26
1240 1290 2.420466 AAATCCGCGTTCTTGGGGGT 62.420 55.000 4.92 0.00 41.98 4.95
1432 1493 2.174319 GGCGCCATTTCTCCTCGTC 61.174 63.158 24.80 0.00 0.00 4.20
1553 1642 5.699915 CAGTAGTGAGGAATTCATGCTATGG 59.300 44.000 7.93 0.00 38.29 2.74
1576 1665 6.543100 TGGTTTTACTCGTTTTGTTATGACCT 59.457 34.615 0.00 0.00 0.00 3.85
1609 1698 4.142790 TGGTCGCCATTTTGGTAAACTTA 58.857 39.130 0.00 0.00 40.46 2.24
1616 1705 6.255453 CGCCATTTTGGTAAACTTATGGAATG 59.745 38.462 0.00 0.00 40.46 2.67
1624 1714 5.955959 GGTAAACTTATGGAATGGGGAACTT 59.044 40.000 0.00 0.00 0.00 2.66
1629 1719 6.557568 ACTTATGGAATGGGGAACTTTTGTA 58.442 36.000 0.00 0.00 0.00 2.41
1633 1723 9.722317 TTATGGAATGGGGAACTTTTGTATTAT 57.278 29.630 0.00 0.00 0.00 1.28
1634 1724 7.416964 TGGAATGGGGAACTTTTGTATTATG 57.583 36.000 0.00 0.00 0.00 1.90
1636 1726 7.676043 TGGAATGGGGAACTTTTGTATTATGAA 59.324 33.333 0.00 0.00 0.00 2.57
1639 1729 9.889128 AATGGGGAACTTTTGTATTATGAAATG 57.111 29.630 0.00 0.00 0.00 2.32
1640 1730 7.846066 TGGGGAACTTTTGTATTATGAAATGG 58.154 34.615 0.00 0.00 0.00 3.16
1641 1731 6.761242 GGGGAACTTTTGTATTATGAAATGGC 59.239 38.462 0.00 0.00 0.00 4.40
1687 1777 7.990886 AGTAGTGTGATTTTCTTTTACCTCACA 59.009 33.333 0.00 0.00 40.29 3.58
1723 1813 3.802675 GCGTAAGTCTGTCCAAAGAGGTT 60.803 47.826 0.00 0.00 38.14 3.50
1733 1823 6.326583 TCTGTCCAAAGAGGTTTCTAGAGAAA 59.673 38.462 0.46 0.46 37.67 2.52
1759 1849 3.795623 TTATCGAGAGTTACCTGGTGC 57.204 47.619 10.23 2.18 0.00 5.01
1760 1850 1.853963 ATCGAGAGTTACCTGGTGCT 58.146 50.000 10.23 7.54 0.00 4.40
1764 1854 2.492484 CGAGAGTTACCTGGTGCTAAGT 59.508 50.000 10.23 0.00 0.00 2.24
1794 1892 4.516698 GGCCTAGATGTGGTGTGAATATTG 59.483 45.833 0.00 0.00 0.00 1.90
1860 1958 2.229792 CAGGTTTAGGCAGCACTTGAA 58.770 47.619 0.00 0.00 0.00 2.69
1874 1974 5.798434 CAGCACTTGAACACACATATTCATG 59.202 40.000 0.00 0.00 34.87 3.07
1885 1985 7.700505 ACACACATATTCATGAATGCTTACAG 58.299 34.615 27.59 15.15 35.96 2.74
1886 1986 6.635641 CACACATATTCATGAATGCTTACAGC 59.364 38.462 27.59 0.00 37.54 4.40
1893 1993 0.753111 GAATGCTTACAGCCCCAGGG 60.753 60.000 0.00 0.00 41.51 4.45
1912 2012 6.340522 CCAGGGAATAAATAAGTTTTGCTGG 58.659 40.000 0.00 0.00 0.00 4.85
1916 2016 6.398095 GGAATAAATAAGTTTTGCTGGCTGT 58.602 36.000 0.00 0.00 0.00 4.40
2016 2183 8.951243 TGTCATTTGATTCGTATTCCAAATACA 58.049 29.630 9.73 0.00 37.18 2.29
2017 2184 9.221775 GTCATTTGATTCGTATTCCAAATACAC 57.778 33.333 9.73 0.00 37.18 2.90
2018 2185 8.402472 TCATTTGATTCGTATTCCAAATACACC 58.598 33.333 9.73 0.00 37.18 4.16
2019 2186 6.687081 TTGATTCGTATTCCAAATACACCC 57.313 37.500 9.73 0.00 0.00 4.61
2020 2187 5.996644 TGATTCGTATTCCAAATACACCCT 58.003 37.500 9.73 0.00 0.00 4.34
2021 2188 6.053005 TGATTCGTATTCCAAATACACCCTC 58.947 40.000 9.73 2.87 0.00 4.30
2022 2189 5.687166 TTCGTATTCCAAATACACCCTCT 57.313 39.130 9.73 0.00 0.00 3.69
2023 2190 5.018539 TCGTATTCCAAATACACCCTCTG 57.981 43.478 9.73 0.00 0.00 3.35
2024 2191 4.468510 TCGTATTCCAAATACACCCTCTGT 59.531 41.667 9.73 0.00 36.82 3.41
2025 2192 5.046159 TCGTATTCCAAATACACCCTCTGTT 60.046 40.000 9.73 0.00 33.91 3.16
2026 2193 5.293569 CGTATTCCAAATACACCCTCTGTTC 59.706 44.000 9.73 0.00 33.91 3.18
2027 2194 3.713826 TCCAAATACACCCTCTGTTCC 57.286 47.619 0.00 0.00 33.91 3.62
2028 2195 3.256704 TCCAAATACACCCTCTGTTCCT 58.743 45.455 0.00 0.00 33.91 3.36
2029 2196 3.009033 TCCAAATACACCCTCTGTTCCTG 59.991 47.826 0.00 0.00 33.91 3.86
2030 2197 3.009033 CCAAATACACCCTCTGTTCCTGA 59.991 47.826 0.00 0.00 33.91 3.86
2031 2198 4.506625 CCAAATACACCCTCTGTTCCTGAA 60.507 45.833 0.00 0.00 33.91 3.02
2032 2199 5.256474 CAAATACACCCTCTGTTCCTGAAT 58.744 41.667 0.00 0.00 33.91 2.57
2033 2200 6.414732 CAAATACACCCTCTGTTCCTGAATA 58.585 40.000 0.00 0.00 33.91 1.75
2034 2201 6.831664 AATACACCCTCTGTTCCTGAATAT 57.168 37.500 0.00 0.00 33.91 1.28
2035 2202 7.931015 AATACACCCTCTGTTCCTGAATATA 57.069 36.000 0.00 0.00 33.91 0.86
2036 2203 7.931015 ATACACCCTCTGTTCCTGAATATAA 57.069 36.000 0.00 0.00 33.91 0.98
2037 2204 6.240549 ACACCCTCTGTTCCTGAATATAAG 57.759 41.667 0.00 0.00 0.00 1.73
2038 2205 5.964477 ACACCCTCTGTTCCTGAATATAAGA 59.036 40.000 0.00 0.00 0.00 2.10
2039 2206 6.127026 ACACCCTCTGTTCCTGAATATAAGAC 60.127 42.308 0.00 0.00 0.00 3.01
2040 2207 5.069251 ACCCTCTGTTCCTGAATATAAGACG 59.931 44.000 0.00 0.00 0.00 4.18
2041 2208 5.069251 CCCTCTGTTCCTGAATATAAGACGT 59.931 44.000 0.00 0.00 0.00 4.34
2042 2209 6.407074 CCCTCTGTTCCTGAATATAAGACGTT 60.407 42.308 0.00 0.00 0.00 3.99
2043 2210 7.042335 CCTCTGTTCCTGAATATAAGACGTTT 58.958 38.462 0.00 0.00 0.00 3.60
2044 2211 7.549488 CCTCTGTTCCTGAATATAAGACGTTTT 59.451 37.037 0.00 0.00 0.00 2.43
2045 2212 8.251750 TCTGTTCCTGAATATAAGACGTTTTG 57.748 34.615 0.83 0.00 0.00 2.44
2046 2213 7.333423 TCTGTTCCTGAATATAAGACGTTTTGG 59.667 37.037 0.83 0.00 0.00 3.28
2047 2214 6.128117 TGTTCCTGAATATAAGACGTTTTGGC 60.128 38.462 0.83 0.00 0.00 4.52
2048 2215 4.569162 TCCTGAATATAAGACGTTTTGGCG 59.431 41.667 0.83 0.00 37.94 5.69
2049 2216 4.260620 CCTGAATATAAGACGTTTTGGCGG 60.261 45.833 0.83 0.00 35.98 6.13
2050 2217 4.255301 TGAATATAAGACGTTTTGGCGGT 58.745 39.130 0.83 0.00 35.98 5.68
2051 2218 4.696402 TGAATATAAGACGTTTTGGCGGTT 59.304 37.500 0.83 0.00 35.98 4.44
2052 2219 5.873712 TGAATATAAGACGTTTTGGCGGTTA 59.126 36.000 0.83 0.00 35.98 2.85
2053 2220 5.723492 ATATAAGACGTTTTGGCGGTTAC 57.277 39.130 0.83 0.00 35.98 2.50
2054 2221 1.957668 AAGACGTTTTGGCGGTTACT 58.042 45.000 0.00 0.00 35.98 2.24
2055 2222 1.505425 AGACGTTTTGGCGGTTACTC 58.495 50.000 0.00 0.00 35.98 2.59
2056 2223 0.514255 GACGTTTTGGCGGTTACTCC 59.486 55.000 0.00 0.00 35.98 3.85
2057 2224 0.886043 ACGTTTTGGCGGTTACTCCC 60.886 55.000 0.00 0.00 35.98 4.30
2058 2225 0.604511 CGTTTTGGCGGTTACTCCCT 60.605 55.000 0.00 0.00 0.00 4.20
2059 2226 1.162698 GTTTTGGCGGTTACTCCCTC 58.837 55.000 0.00 0.00 0.00 4.30
2060 2227 0.037160 TTTTGGCGGTTACTCCCTCC 59.963 55.000 0.00 0.00 0.00 4.30
2061 2228 2.175035 TTTGGCGGTTACTCCCTCCG 62.175 60.000 0.00 0.00 45.94 4.63
2062 2229 3.073101 GGCGGTTACTCCCTCCGT 61.073 66.667 0.00 0.00 45.11 4.69
2063 2230 2.493501 GCGGTTACTCCCTCCGTC 59.506 66.667 0.00 0.00 45.11 4.79
2064 2231 3.073742 GCGGTTACTCCCTCCGTCC 62.074 68.421 0.00 0.00 45.11 4.79
2065 2232 2.421399 CGGTTACTCCCTCCGTCCC 61.421 68.421 0.00 0.00 39.51 4.46
2066 2233 1.305549 GGTTACTCCCTCCGTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
2067 2234 1.611474 GGTTACTCCCTCCGTCCCAC 61.611 65.000 0.00 0.00 0.00 4.61
2068 2235 0.901580 GTTACTCCCTCCGTCCCACA 60.902 60.000 0.00 0.00 0.00 4.17
2069 2236 0.178926 TTACTCCCTCCGTCCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
2070 2237 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
2071 2238 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
2072 2239 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
2073 2240 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
2074 2241 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
2075 2242 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
2076 2243 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2077 2244 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
2078 2245 4.563580 CCCTCCGTCCCACAATATAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
2079 2246 4.040461 CCTCCGTCCCACAATATAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
2080 2247 5.454755 CCTCCGTCCCACAATATAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
2081 2248 5.996644 TCCGTCCCACAATATAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
2082 2249 7.127012 TCCGTCCCACAATATAAGATGTTTA 57.873 36.000 0.00 0.00 0.00 2.01
2083 2250 7.214381 TCCGTCCCACAATATAAGATGTTTAG 58.786 38.462 0.00 0.00 0.00 1.85
2084 2251 7.070198 TCCGTCCCACAATATAAGATGTTTAGA 59.930 37.037 0.00 0.00 0.00 2.10
2085 2252 7.385205 CCGTCCCACAATATAAGATGTTTAGAG 59.615 40.741 0.00 0.00 0.00 2.43
2086 2253 8.141909 CGTCCCACAATATAAGATGTTTAGAGA 58.858 37.037 0.00 0.00 0.00 3.10
2087 2254 9.482627 GTCCCACAATATAAGATGTTTAGAGAG 57.517 37.037 0.00 0.00 0.00 3.20
2088 2255 9.213777 TCCCACAATATAAGATGTTTAGAGAGT 57.786 33.333 0.00 0.00 0.00 3.24
2096 2263 6.360370 AAGATGTTTAGAGAGTAACTGCCA 57.640 37.500 0.00 0.00 0.00 4.92
2097 2264 6.360370 AGATGTTTAGAGAGTAACTGCCAA 57.640 37.500 0.00 0.00 0.00 4.52
2098 2265 6.769512 AGATGTTTAGAGAGTAACTGCCAAA 58.230 36.000 0.00 0.00 0.00 3.28
2099 2266 7.224297 AGATGTTTAGAGAGTAACTGCCAAAA 58.776 34.615 0.00 0.00 0.00 2.44
2100 2267 6.613755 TGTTTAGAGAGTAACTGCCAAAAC 57.386 37.500 0.00 0.00 0.00 2.43
2101 2268 6.116806 TGTTTAGAGAGTAACTGCCAAAACA 58.883 36.000 0.00 0.00 0.00 2.83
2102 2269 6.770785 TGTTTAGAGAGTAACTGCCAAAACAT 59.229 34.615 0.00 0.00 0.00 2.71
2103 2270 7.041372 TGTTTAGAGAGTAACTGCCAAAACATC 60.041 37.037 0.00 0.00 0.00 3.06
2104 2271 5.234466 AGAGAGTAACTGCCAAAACATCT 57.766 39.130 0.00 0.00 0.00 2.90
2105 2272 5.625150 AGAGAGTAACTGCCAAAACATCTT 58.375 37.500 0.00 0.00 0.00 2.40
2106 2273 6.769512 AGAGAGTAACTGCCAAAACATCTTA 58.230 36.000 0.00 0.00 0.00 2.10
2107 2274 6.651225 AGAGAGTAACTGCCAAAACATCTTAC 59.349 38.462 0.00 0.00 0.00 2.34
2108 2275 6.296026 AGAGTAACTGCCAAAACATCTTACA 58.704 36.000 0.00 0.00 0.00 2.41
2109 2276 6.942576 AGAGTAACTGCCAAAACATCTTACAT 59.057 34.615 0.00 0.00 0.00 2.29
2110 2277 7.448469 AGAGTAACTGCCAAAACATCTTACATT 59.552 33.333 0.00 0.00 0.00 2.71
2111 2278 8.630054 AGTAACTGCCAAAACATCTTACATTA 57.370 30.769 0.00 0.00 0.00 1.90
2112 2279 8.730680 AGTAACTGCCAAAACATCTTACATTAG 58.269 33.333 0.00 0.00 0.00 1.73
2113 2280 7.524717 AACTGCCAAAACATCTTACATTAGT 57.475 32.000 0.00 0.00 0.00 2.24
2114 2281 6.913170 ACTGCCAAAACATCTTACATTAGTG 58.087 36.000 0.00 0.00 0.00 2.74
2115 2282 6.714810 ACTGCCAAAACATCTTACATTAGTGA 59.285 34.615 0.00 0.00 0.00 3.41
2116 2283 7.094634 ACTGCCAAAACATCTTACATTAGTGAG 60.095 37.037 0.00 0.00 32.96 3.51
2117 2284 6.030228 GCCAAAACATCTTACATTAGTGAGC 58.970 40.000 0.00 0.00 31.82 4.26
2118 2285 6.349280 GCCAAAACATCTTACATTAGTGAGCA 60.349 38.462 0.00 0.00 31.82 4.26
2119 2286 7.629222 GCCAAAACATCTTACATTAGTGAGCAT 60.629 37.037 0.00 0.00 31.82 3.79
2120 2287 8.892723 CCAAAACATCTTACATTAGTGAGCATA 58.107 33.333 0.00 0.00 31.82 3.14
2121 2288 9.926751 CAAAACATCTTACATTAGTGAGCATAG 57.073 33.333 0.00 0.00 31.82 2.23
2122 2289 8.668510 AAACATCTTACATTAGTGAGCATAGG 57.331 34.615 0.00 0.00 31.82 2.57
2123 2290 7.366847 ACATCTTACATTAGTGAGCATAGGT 57.633 36.000 0.00 0.00 31.82 3.08
2124 2291 8.478775 ACATCTTACATTAGTGAGCATAGGTA 57.521 34.615 0.00 0.00 31.82 3.08
2125 2292 8.580720 ACATCTTACATTAGTGAGCATAGGTAG 58.419 37.037 0.00 0.00 31.82 3.18
2144 2311 9.774413 ATAGGTAGTACTTATTTGTGGTTATGC 57.226 33.333 0.00 0.00 0.00 3.14
2197 2365 9.574516 AAGTGTTATTCAAAGACTTGTCCTAAT 57.425 29.630 0.10 0.00 33.94 1.73
2234 2402 5.123979 GCAAGGTATTTTGGAACAGAGGTAG 59.876 44.000 0.00 0.00 42.39 3.18
2329 2879 4.398988 TCATCATTGTGCTTGGTTGGATAC 59.601 41.667 0.00 0.00 0.00 2.24
2341 2891 2.163412 GGTTGGATACGCAATGCTTGAA 59.837 45.455 2.94 0.00 42.51 2.69
2342 2892 3.429085 GTTGGATACGCAATGCTTGAAG 58.571 45.455 2.94 0.00 42.51 3.02
2385 2935 5.531122 TCTGATTATTTGTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
2386 2936 4.960469 TCTGATTATTTGTACTCCCTCCGT 59.040 41.667 0.00 0.00 0.00 4.69
2387 2937 5.424252 TCTGATTATTTGTACTCCCTCCGTT 59.576 40.000 0.00 0.00 0.00 4.44
2388 2938 5.667466 TGATTATTTGTACTCCCTCCGTTC 58.333 41.667 0.00 0.00 0.00 3.95
2389 2939 4.476628 TTATTTGTACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
2390 2940 1.719529 TTTGTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
2391 2941 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
2392 2942 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2393 2943 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
2394 2944 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
2395 2945 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
2396 2946 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2397 2947 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2398 2948 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2399 2949 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2400 2950 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2401 2951 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2402 2952 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2403 2953 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2404 2954 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2405 2955 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.033228 GGACGCTGGAGAGGATGATG 59.967 60.000 0.00 0.00 0.00 3.07
1 2 0.105760 AGGACGCTGGAGAGGATGAT 60.106 55.000 0.00 0.00 0.00 2.45
43 44 0.602372 GATCGCTTGGAGATGAGGCC 60.602 60.000 0.00 0.00 0.00 5.19
134 135 1.541233 CGCCAGTGGAAAGTTCTCTGT 60.541 52.381 15.20 0.00 32.13 3.41
234 240 1.053424 ACCTTACGGAGCTTGTGGAA 58.947 50.000 3.04 0.00 0.00 3.53
247 253 4.628074 TCTGACAACAACTGCTACCTTAC 58.372 43.478 0.00 0.00 0.00 2.34
248 254 4.948341 TCTGACAACAACTGCTACCTTA 57.052 40.909 0.00 0.00 0.00 2.69
409 416 0.473755 TTGCTCTGAGCCTGAAACCA 59.526 50.000 25.61 2.54 41.51 3.67
410 417 1.609208 TTTGCTCTGAGCCTGAAACC 58.391 50.000 25.61 0.00 41.51 3.27
454 462 6.644347 AGAGATAATCTTGCGAAAAGAAGGA 58.356 36.000 5.25 0.00 32.99 3.36
545 553 8.770828 GCTTCTAGTGTTAGTACAAAAATGTGA 58.229 33.333 0.00 0.00 35.69 3.58
668 676 9.605955 GGTTTTGGGAAAATCGAATAAAAATTG 57.394 29.630 0.00 0.00 32.22 2.32
681 689 7.630297 GCTTTTCAAACATGGTTTTGGGAAAAT 60.630 33.333 15.71 0.00 37.13 1.82
693 701 1.701704 GCCTCGCTTTTCAAACATGG 58.298 50.000 0.00 0.00 0.00 3.66
694 702 1.069296 TCGCCTCGCTTTTCAAACATG 60.069 47.619 0.00 0.00 0.00 3.21
752 760 4.393062 CCTACTTACTACTCGTCGGAAACA 59.607 45.833 0.00 0.00 0.00 2.83
819 848 1.959282 CCAAGTTCTGAAAGCAAGCCT 59.041 47.619 0.00 0.00 0.00 4.58
821 850 1.603931 GCCCAAGTTCTGAAAGCAAGC 60.604 52.381 0.00 0.00 0.00 4.01
822 851 1.959282 AGCCCAAGTTCTGAAAGCAAG 59.041 47.619 0.00 0.00 0.00 4.01
823 852 1.682854 CAGCCCAAGTTCTGAAAGCAA 59.317 47.619 0.00 0.00 32.26 3.91
824 853 1.321474 CAGCCCAAGTTCTGAAAGCA 58.679 50.000 0.00 0.00 32.26 3.91
825 854 0.038801 GCAGCCCAAGTTCTGAAAGC 60.039 55.000 0.00 0.00 32.26 3.51
916 948 0.741221 GGTCGAGATTCAGGTGTGGC 60.741 60.000 0.00 0.00 0.00 5.01
1202 1252 3.140225 GAGCCTCCGGTAGCGAAGG 62.140 68.421 16.02 16.02 0.00 3.46
1240 1290 1.078918 CTTGATCCCTGCGAGCACA 60.079 57.895 0.00 0.00 36.38 4.57
1432 1493 5.352284 AGATGTAACATTTGCGGTAGAGAG 58.648 41.667 0.00 0.00 0.00 3.20
1553 1642 6.854381 CCAGGTCATAACAAAACGAGTAAAAC 59.146 38.462 0.00 0.00 0.00 2.43
1576 1665 2.498644 TGGCGACCAAATTATGACCA 57.501 45.000 0.00 0.00 0.00 4.02
1609 1698 7.843760 TCATAATACAAAAGTTCCCCATTCCAT 59.156 33.333 0.00 0.00 0.00 3.41
1616 1705 6.761242 GCCATTTCATAATACAAAAGTTCCCC 59.239 38.462 0.00 0.00 0.00 4.81
1633 1723 7.898014 TCTAGAGACACTATAAGCCATTTCA 57.102 36.000 0.00 0.00 0.00 2.69
1638 1728 8.998277 ACTTAATCTAGAGACACTATAAGCCA 57.002 34.615 0.00 0.00 30.47 4.75
1646 1736 9.469097 AATCACACTACTTAATCTAGAGACACT 57.531 33.333 0.00 0.00 0.00 3.55
1680 1770 0.833834 ACAGCTAGCCAGTGTGAGGT 60.834 55.000 12.13 0.00 0.00 3.85
1687 1777 1.541310 TTACGCCACAGCTAGCCAGT 61.541 55.000 12.13 7.94 36.60 4.00
1759 1849 5.760253 CCACATCTAGGCCATAACAACTTAG 59.240 44.000 5.01 0.00 0.00 2.18
1760 1850 5.190925 ACCACATCTAGGCCATAACAACTTA 59.809 40.000 5.01 0.00 0.00 2.24
1764 1854 3.265737 ACACCACATCTAGGCCATAACAA 59.734 43.478 5.01 0.00 0.00 2.83
1825 1923 6.127619 GCCTAAACCTGCAATCTAACTTCATT 60.128 38.462 0.00 0.00 0.00 2.57
1836 1934 0.890683 GTGCTGCCTAAACCTGCAAT 59.109 50.000 0.00 0.00 38.57 3.56
1860 1958 7.628769 TGTAAGCATTCATGAATATGTGTGT 57.371 32.000 20.32 5.37 35.73 3.72
1885 1985 5.670485 CAAAACTTATTTATTCCCTGGGGC 58.330 41.667 14.00 0.00 34.68 5.80
1886 1986 5.425217 AGCAAAACTTATTTATTCCCTGGGG 59.575 40.000 14.00 2.42 0.00 4.96
1893 1993 7.889589 AACAGCCAGCAAAACTTATTTATTC 57.110 32.000 0.00 0.00 0.00 1.75
1912 2012 7.066284 ACTCATTATGTGGATCAAGTTAACAGC 59.934 37.037 8.61 0.00 0.00 4.40
1916 2016 9.685276 ATCAACTCATTATGTGGATCAAGTTAA 57.315 29.630 0.00 0.00 0.00 2.01
1986 2153 7.806409 TGGAATACGAATCAAATGACATCAT 57.194 32.000 0.00 0.00 38.41 2.45
1991 2158 9.221775 GTGTATTTGGAATACGAATCAAATGAC 57.778 33.333 9.52 4.18 39.32 3.06
1997 2164 5.996644 AGGGTGTATTTGGAATACGAATCA 58.003 37.500 0.00 0.00 34.90 2.57
2016 2183 5.069251 CGTCTTATATTCAGGAACAGAGGGT 59.931 44.000 0.00 0.00 0.00 4.34
2017 2184 5.069251 ACGTCTTATATTCAGGAACAGAGGG 59.931 44.000 0.00 0.00 0.00 4.30
2018 2185 6.150396 ACGTCTTATATTCAGGAACAGAGG 57.850 41.667 0.00 0.00 0.00 3.69
2019 2186 8.383619 CAAAACGTCTTATATTCAGGAACAGAG 58.616 37.037 0.00 0.00 0.00 3.35
2020 2187 7.333423 CCAAAACGTCTTATATTCAGGAACAGA 59.667 37.037 0.00 0.00 0.00 3.41
2021 2188 7.464358 CCAAAACGTCTTATATTCAGGAACAG 58.536 38.462 0.00 0.00 0.00 3.16
2022 2189 6.128117 GCCAAAACGTCTTATATTCAGGAACA 60.128 38.462 0.00 0.00 0.00 3.18
2023 2190 6.255950 GCCAAAACGTCTTATATTCAGGAAC 58.744 40.000 0.00 0.00 0.00 3.62
2024 2191 5.064198 CGCCAAAACGTCTTATATTCAGGAA 59.936 40.000 0.00 0.00 0.00 3.36
2025 2192 4.569162 CGCCAAAACGTCTTATATTCAGGA 59.431 41.667 0.00 0.00 0.00 3.86
2026 2193 4.260620 CCGCCAAAACGTCTTATATTCAGG 60.261 45.833 0.00 0.00 0.00 3.86
2027 2194 4.331717 ACCGCCAAAACGTCTTATATTCAG 59.668 41.667 0.00 0.00 0.00 3.02
2028 2195 4.255301 ACCGCCAAAACGTCTTATATTCA 58.745 39.130 0.00 0.00 0.00 2.57
2029 2196 4.870221 ACCGCCAAAACGTCTTATATTC 57.130 40.909 0.00 0.00 0.00 1.75
2030 2197 5.876460 AGTAACCGCCAAAACGTCTTATATT 59.124 36.000 0.00 0.00 0.00 1.28
2031 2198 5.422145 AGTAACCGCCAAAACGTCTTATAT 58.578 37.500 0.00 0.00 0.00 0.86
2032 2199 4.819769 AGTAACCGCCAAAACGTCTTATA 58.180 39.130 0.00 0.00 0.00 0.98
2033 2200 3.667360 AGTAACCGCCAAAACGTCTTAT 58.333 40.909 0.00 0.00 0.00 1.73
2034 2201 3.059166 GAGTAACCGCCAAAACGTCTTA 58.941 45.455 0.00 0.00 0.00 2.10
2035 2202 1.869132 GAGTAACCGCCAAAACGTCTT 59.131 47.619 0.00 0.00 0.00 3.01
2036 2203 1.505425 GAGTAACCGCCAAAACGTCT 58.495 50.000 0.00 0.00 0.00 4.18
2037 2204 0.514255 GGAGTAACCGCCAAAACGTC 59.486 55.000 0.00 0.00 0.00 4.34
2038 2205 0.886043 GGGAGTAACCGCCAAAACGT 60.886 55.000 0.00 0.00 40.11 3.99
2039 2206 0.604511 AGGGAGTAACCGCCAAAACG 60.605 55.000 0.00 0.00 40.11 3.60
2040 2207 1.162698 GAGGGAGTAACCGCCAAAAC 58.837 55.000 0.00 0.00 40.11 2.43
2041 2208 3.637184 GAGGGAGTAACCGCCAAAA 57.363 52.632 0.00 0.00 40.11 2.44
2048 2215 1.305549 TGGGACGGAGGGAGTAACC 60.306 63.158 0.00 0.00 38.08 2.85
2049 2216 0.901580 TGTGGGACGGAGGGAGTAAC 60.902 60.000 0.00 0.00 0.00 2.50
2050 2217 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.000 0.00 0.00 0.00 2.24
2051 2218 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
2052 2219 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
2053 2220 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2054 2221 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2055 2222 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2056 2223 4.040461 ACATCTTATATTGTGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
2057 2224 5.215252 ACATCTTATATTGTGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
2058 2225 5.623956 AACATCTTATATTGTGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
2059 2226 7.214381 TCTAAACATCTTATATTGTGGGACGG 58.786 38.462 0.00 0.00 0.00 4.79
2060 2227 8.141909 TCTCTAAACATCTTATATTGTGGGACG 58.858 37.037 0.00 0.00 0.00 4.79
2061 2228 9.482627 CTCTCTAAACATCTTATATTGTGGGAC 57.517 37.037 0.00 0.00 0.00 4.46
2062 2229 9.213777 ACTCTCTAAACATCTTATATTGTGGGA 57.786 33.333 0.00 0.00 0.00 4.37
2070 2237 9.197306 TGGCAGTTACTCTCTAAACATCTTATA 57.803 33.333 0.00 0.00 0.00 0.98
2071 2238 8.079211 TGGCAGTTACTCTCTAAACATCTTAT 57.921 34.615 0.00 0.00 0.00 1.73
2072 2239 7.476540 TGGCAGTTACTCTCTAAACATCTTA 57.523 36.000 0.00 0.00 0.00 2.10
2073 2240 6.360370 TGGCAGTTACTCTCTAAACATCTT 57.640 37.500 0.00 0.00 0.00 2.40
2074 2241 6.360370 TTGGCAGTTACTCTCTAAACATCT 57.640 37.500 0.00 0.00 0.00 2.90
2075 2242 7.041372 TGTTTTGGCAGTTACTCTCTAAACATC 60.041 37.037 14.58 3.37 0.00 3.06
2076 2243 6.770785 TGTTTTGGCAGTTACTCTCTAAACAT 59.229 34.615 14.58 0.00 0.00 2.71
2077 2244 6.116806 TGTTTTGGCAGTTACTCTCTAAACA 58.883 36.000 14.58 14.58 0.00 2.83
2078 2245 6.613755 TGTTTTGGCAGTTACTCTCTAAAC 57.386 37.500 11.37 11.37 0.00 2.01
2079 2246 7.224297 AGATGTTTTGGCAGTTACTCTCTAAA 58.776 34.615 0.00 0.00 0.00 1.85
2080 2247 6.769512 AGATGTTTTGGCAGTTACTCTCTAA 58.230 36.000 0.00 0.00 0.00 2.10
2081 2248 6.360370 AGATGTTTTGGCAGTTACTCTCTA 57.640 37.500 0.00 0.00 0.00 2.43
2082 2249 5.234466 AGATGTTTTGGCAGTTACTCTCT 57.766 39.130 0.00 0.00 0.00 3.10
2083 2250 5.948992 AAGATGTTTTGGCAGTTACTCTC 57.051 39.130 0.00 0.00 0.00 3.20
2084 2251 6.296026 TGTAAGATGTTTTGGCAGTTACTCT 58.704 36.000 0.00 0.00 0.00 3.24
2085 2252 6.554334 TGTAAGATGTTTTGGCAGTTACTC 57.446 37.500 0.00 0.00 0.00 2.59
2086 2253 7.524717 AATGTAAGATGTTTTGGCAGTTACT 57.475 32.000 0.00 0.00 0.00 2.24
2087 2254 8.512138 ACTAATGTAAGATGTTTTGGCAGTTAC 58.488 33.333 0.00 0.00 0.00 2.50
2088 2255 8.511321 CACTAATGTAAGATGTTTTGGCAGTTA 58.489 33.333 0.00 0.00 0.00 2.24
2089 2256 7.230510 TCACTAATGTAAGATGTTTTGGCAGTT 59.769 33.333 0.00 0.00 0.00 3.16
2090 2257 6.714810 TCACTAATGTAAGATGTTTTGGCAGT 59.285 34.615 0.00 0.00 0.00 4.40
2091 2258 7.144722 TCACTAATGTAAGATGTTTTGGCAG 57.855 36.000 0.00 0.00 0.00 4.85
2092 2259 6.349280 GCTCACTAATGTAAGATGTTTTGGCA 60.349 38.462 0.00 0.00 0.00 4.92
2093 2260 6.030228 GCTCACTAATGTAAGATGTTTTGGC 58.970 40.000 0.00 0.00 0.00 4.52
2094 2261 7.144722 TGCTCACTAATGTAAGATGTTTTGG 57.855 36.000 0.00 0.00 0.00 3.28
2095 2262 9.926751 CTATGCTCACTAATGTAAGATGTTTTG 57.073 33.333 0.00 0.00 0.00 2.44
2096 2263 9.113838 CCTATGCTCACTAATGTAAGATGTTTT 57.886 33.333 0.00 0.00 0.00 2.43
2097 2264 8.267894 ACCTATGCTCACTAATGTAAGATGTTT 58.732 33.333 0.00 0.00 0.00 2.83
2098 2265 7.796054 ACCTATGCTCACTAATGTAAGATGTT 58.204 34.615 0.00 0.00 0.00 2.71
2099 2266 7.366847 ACCTATGCTCACTAATGTAAGATGT 57.633 36.000 0.00 0.00 0.00 3.06
2100 2267 8.580720 ACTACCTATGCTCACTAATGTAAGATG 58.419 37.037 0.00 0.00 0.00 2.90
2101 2268 8.713708 ACTACCTATGCTCACTAATGTAAGAT 57.286 34.615 0.00 0.00 0.00 2.40
2102 2269 9.064706 GTACTACCTATGCTCACTAATGTAAGA 57.935 37.037 0.00 0.00 0.00 2.10
2103 2270 9.069082 AGTACTACCTATGCTCACTAATGTAAG 57.931 37.037 0.00 0.00 0.00 2.34
2104 2271 8.991783 AGTACTACCTATGCTCACTAATGTAA 57.008 34.615 0.00 0.00 0.00 2.41
2105 2272 8.991783 AAGTACTACCTATGCTCACTAATGTA 57.008 34.615 0.00 0.00 0.00 2.29
2106 2273 7.899648 AAGTACTACCTATGCTCACTAATGT 57.100 36.000 0.00 0.00 0.00 2.71
2110 2277 9.417561 ACAAATAAGTACTACCTATGCTCACTA 57.582 33.333 0.00 0.00 0.00 2.74
2111 2278 8.198109 CACAAATAAGTACTACCTATGCTCACT 58.802 37.037 0.00 0.00 0.00 3.41
2112 2279 7.438459 CCACAAATAAGTACTACCTATGCTCAC 59.562 40.741 0.00 0.00 0.00 3.51
2113 2280 7.125204 ACCACAAATAAGTACTACCTATGCTCA 59.875 37.037 0.00 0.00 0.00 4.26
2114 2281 7.498443 ACCACAAATAAGTACTACCTATGCTC 58.502 38.462 0.00 0.00 0.00 4.26
2115 2282 7.433537 ACCACAAATAAGTACTACCTATGCT 57.566 36.000 0.00 0.00 0.00 3.79
2116 2283 9.774413 ATAACCACAAATAAGTACTACCTATGC 57.226 33.333 0.00 0.00 0.00 3.14
2118 2285 9.774413 GCATAACCACAAATAAGTACTACCTAT 57.226 33.333 0.00 0.00 0.00 2.57
2119 2286 8.984855 AGCATAACCACAAATAAGTACTACCTA 58.015 33.333 0.00 0.00 0.00 3.08
2120 2287 7.858498 AGCATAACCACAAATAAGTACTACCT 58.142 34.615 0.00 0.00 0.00 3.08
2121 2288 8.502105 AAGCATAACCACAAATAAGTACTACC 57.498 34.615 0.00 0.00 0.00 3.18
2124 2291 9.297037 AGAAAAGCATAACCACAAATAAGTACT 57.703 29.630 0.00 0.00 0.00 2.73
2177 2345 9.010029 GGTTTCATTAGGACAAGTCTTTGAATA 57.990 33.333 0.00 0.00 37.73 1.75
2197 2365 8.474025 CCAAAATACCTTGCATATTAGGTTTCA 58.526 33.333 12.91 0.00 42.01 2.69
2293 2843 6.832384 AGCACAATGATGAATGGAAGTAAGAT 59.168 34.615 0.00 0.00 0.00 2.40
2309 2859 2.746904 CGTATCCAACCAAGCACAATGA 59.253 45.455 0.00 0.00 0.00 2.57
2313 2863 0.250510 TGCGTATCCAACCAAGCACA 60.251 50.000 0.00 0.00 0.00 4.57
2377 2927 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2378 2928 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2379 2929 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2380 2930 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2381 2931 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2382 2932 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.