Multiple sequence alignment - TraesCS2A01G154000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G154000 chr2A 100.000 2429 0 0 1 2429 101841255 101838827 0.000000e+00 4486
1 TraesCS2A01G154000 chr2A 83.252 412 45 17 1015 1405 101824981 101824573 8.260000e-95 357
2 TraesCS2A01G154000 chr2A 95.516 223 10 0 1 223 702183422 702183200 8.260000e-95 357
3 TraesCS2A01G154000 chr2B 88.391 1473 84 33 236 1663 153908615 153907185 0.000000e+00 1692
4 TraesCS2A01G154000 chr2B 89.312 552 38 9 1678 2218 153905567 153905026 0.000000e+00 673
5 TraesCS2A01G154000 chr2B 95.089 224 10 1 1 224 778840393 778840615 3.840000e-93 351
6 TraesCS2A01G154000 chr2B 85.143 350 31 15 1074 1405 153895336 153894990 2.990000e-89 339
7 TraesCS2A01G154000 chr2D 89.232 1068 59 30 792 1844 102728667 102727641 0.000000e+00 1284
8 TraesCS2A01G154000 chr2D 90.926 529 26 10 220 737 102729979 102729462 0.000000e+00 691
9 TraesCS2A01G154000 chr2D 87.715 407 27 6 1845 2233 102727270 102726869 1.020000e-123 453
10 TraesCS2A01G154000 chr2D 86.136 339 26 14 1079 1399 102646667 102646332 1.790000e-91 346
11 TraesCS2A01G154000 chr5B 96.330 218 8 0 1 218 655288835 655289052 2.300000e-95 359
12 TraesCS2A01G154000 chr7B 95.909 220 9 0 1 220 619611203 619611422 8.260000e-95 357
13 TraesCS2A01G154000 chr7A 95.872 218 9 0 1 218 659589605 659589822 1.070000e-93 353
14 TraesCS2A01G154000 chr7A 95.045 222 10 1 1 222 78662885 78662665 4.970000e-92 348
15 TraesCS2A01G154000 chr6B 95.872 218 9 0 1 218 523064198 523063981 1.070000e-93 353
16 TraesCS2A01G154000 chr6A 95.872 218 9 0 1 218 38726437 38726654 1.070000e-93 353
17 TraesCS2A01G154000 chr6A 94.043 235 11 3 1 234 556646559 556646327 1.070000e-93 353
18 TraesCS2A01G154000 chr5D 82.469 405 41 22 1018 1399 432892855 432892458 6.480000e-86 327
19 TraesCS2A01G154000 chr4A 80.292 274 34 15 1075 1333 358874271 358874539 3.190000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G154000 chr2A 101838827 101841255 2428 True 4486.000000 4486 100.0000 1 2429 1 chr2A.!!$R2 2428
1 TraesCS2A01G154000 chr2B 153905026 153908615 3589 True 1182.500000 1692 88.8515 236 2218 2 chr2B.!!$R2 1982
2 TraesCS2A01G154000 chr2D 102726869 102729979 3110 True 809.333333 1284 89.2910 220 2233 3 chr2D.!!$R2 2013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.034756 CGGGAACATCACACACTCCA 59.965 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 2316 0.249447 TCAGCTCGAATATGCCACGG 60.249 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.942850 TGTGTCACATATTTAATGAAGAGAGAA 57.057 29.630 0.18 0.00 0.00 2.87
34 35 9.102757 TCACATATTTAATGAAGAGAGAAGTGC 57.897 33.333 0.00 0.00 0.00 4.40
35 36 9.107177 CACATATTTAATGAAGAGAGAAGTGCT 57.893 33.333 0.00 0.00 0.00 4.40
36 37 9.678260 ACATATTTAATGAAGAGAGAAGTGCTT 57.322 29.630 0.00 0.00 0.00 3.91
37 38 9.932699 CATATTTAATGAAGAGAGAAGTGCTTG 57.067 33.333 0.00 0.00 0.00 4.01
38 39 7.992754 ATTTAATGAAGAGAGAAGTGCTTGT 57.007 32.000 0.00 0.00 0.00 3.16
39 40 6.791887 TTAATGAAGAGAGAAGTGCTTGTG 57.208 37.500 0.00 0.00 0.00 3.33
40 41 3.117491 TGAAGAGAGAAGTGCTTGTGG 57.883 47.619 0.00 0.00 0.00 4.17
41 42 2.435805 TGAAGAGAGAAGTGCTTGTGGT 59.564 45.455 0.00 0.00 0.00 4.16
42 43 3.641436 TGAAGAGAGAAGTGCTTGTGGTA 59.359 43.478 0.00 0.00 0.00 3.25
43 44 4.100963 TGAAGAGAGAAGTGCTTGTGGTAA 59.899 41.667 0.00 0.00 0.00 2.85
44 45 3.996480 AGAGAGAAGTGCTTGTGGTAAC 58.004 45.455 0.00 0.00 0.00 2.50
45 46 3.643792 AGAGAGAAGTGCTTGTGGTAACT 59.356 43.478 0.00 0.00 37.61 2.24
46 47 4.833380 AGAGAGAAGTGCTTGTGGTAACTA 59.167 41.667 0.00 0.00 37.61 2.24
47 48 5.047660 AGAGAGAAGTGCTTGTGGTAACTAG 60.048 44.000 0.00 0.00 37.61 2.57
64 65 5.672421 AACTAGCTAAGTTACGGGAACAT 57.328 39.130 5.78 0.00 46.85 2.71
65 66 5.259832 ACTAGCTAAGTTACGGGAACATC 57.740 43.478 5.78 0.00 40.86 3.06
66 67 4.708421 ACTAGCTAAGTTACGGGAACATCA 59.292 41.667 5.78 0.00 40.86 3.07
67 68 3.858247 AGCTAAGTTACGGGAACATCAC 58.142 45.455 5.78 0.00 40.86 3.06
68 69 3.259876 AGCTAAGTTACGGGAACATCACA 59.740 43.478 5.78 0.00 40.86 3.58
69 70 3.370061 GCTAAGTTACGGGAACATCACAC 59.630 47.826 5.78 0.00 40.86 3.82
70 71 3.478857 AAGTTACGGGAACATCACACA 57.521 42.857 5.78 0.00 40.86 3.72
71 72 2.762745 AGTTACGGGAACATCACACAC 58.237 47.619 5.78 0.00 40.86 3.82
72 73 2.367567 AGTTACGGGAACATCACACACT 59.632 45.455 5.78 0.00 40.86 3.55
73 74 2.735134 GTTACGGGAACATCACACACTC 59.265 50.000 0.00 0.00 38.02 3.51
74 75 0.034896 ACGGGAACATCACACACTCC 59.965 55.000 0.00 0.00 0.00 3.85
75 76 0.034756 CGGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
76 77 1.542328 CGGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
77 78 2.154462 GGGAACATCACACACTCCAAG 58.846 52.381 0.00 0.00 0.00 3.61
78 79 2.224523 GGGAACATCACACACTCCAAGA 60.225 50.000 0.00 0.00 0.00 3.02
79 80 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
80 81 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
81 82 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
82 83 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
83 84 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
84 85 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
85 86 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
86 87 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
87 88 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
88 89 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
89 90 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
90 91 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
91 92 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
92 93 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
93 94 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
94 95 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
95 96 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
96 97 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
97 98 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
98 99 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
99 100 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
131 132 8.996271 ACATTATTGCATGACACTACATAGATG 58.004 33.333 0.00 0.00 0.00 2.90
132 133 8.996271 CATTATTGCATGACACTACATAGATGT 58.004 33.333 0.00 0.08 44.48 3.06
133 134 8.962884 TTATTGCATGACACTACATAGATGTT 57.037 30.769 0.00 0.00 41.97 2.71
134 135 6.908870 TTGCATGACACTACATAGATGTTC 57.091 37.500 0.00 0.00 41.97 3.18
135 136 6.225981 TGCATGACACTACATAGATGTTCT 57.774 37.500 0.00 0.00 41.97 3.01
136 137 6.643388 TGCATGACACTACATAGATGTTCTT 58.357 36.000 0.00 0.00 41.97 2.52
137 138 7.781056 TGCATGACACTACATAGATGTTCTTA 58.219 34.615 0.00 0.00 41.97 2.10
138 139 7.706607 TGCATGACACTACATAGATGTTCTTAC 59.293 37.037 0.00 0.00 41.97 2.34
139 140 7.169982 GCATGACACTACATAGATGTTCTTACC 59.830 40.741 0.00 0.00 41.97 2.85
140 141 7.108841 TGACACTACATAGATGTTCTTACCC 57.891 40.000 0.00 0.00 41.97 3.69
141 142 6.666113 TGACACTACATAGATGTTCTTACCCA 59.334 38.462 0.00 0.00 41.97 4.51
142 143 6.875076 ACACTACATAGATGTTCTTACCCAC 58.125 40.000 0.00 0.00 41.97 4.61
143 144 6.668283 ACACTACATAGATGTTCTTACCCACT 59.332 38.462 0.00 0.00 41.97 4.00
144 145 6.980978 CACTACATAGATGTTCTTACCCACTG 59.019 42.308 0.00 0.00 41.97 3.66
145 146 6.668283 ACTACATAGATGTTCTTACCCACTGT 59.332 38.462 0.00 0.00 41.97 3.55
146 147 5.734720 ACATAGATGTTCTTACCCACTGTG 58.265 41.667 0.00 0.00 37.90 3.66
147 148 5.483937 ACATAGATGTTCTTACCCACTGTGA 59.516 40.000 9.86 0.00 37.90 3.58
148 149 4.974645 AGATGTTCTTACCCACTGTGAA 57.025 40.909 9.86 0.00 0.00 3.18
149 150 4.899502 AGATGTTCTTACCCACTGTGAAG 58.100 43.478 9.86 5.41 0.00 3.02
150 151 3.485463 TGTTCTTACCCACTGTGAAGG 57.515 47.619 9.86 5.43 0.00 3.46
151 152 2.775384 TGTTCTTACCCACTGTGAAGGT 59.225 45.455 9.86 11.38 37.69 3.50
152 153 3.968649 TGTTCTTACCCACTGTGAAGGTA 59.031 43.478 9.86 10.35 35.02 3.08
153 154 4.039973 TGTTCTTACCCACTGTGAAGGTAG 59.960 45.833 9.86 7.58 37.44 3.18
154 155 3.853207 TCTTACCCACTGTGAAGGTAGT 58.147 45.455 9.86 0.00 37.44 2.73
155 156 5.001833 TCTTACCCACTGTGAAGGTAGTA 57.998 43.478 9.86 3.09 37.44 1.82
156 157 5.396485 TCTTACCCACTGTGAAGGTAGTAA 58.604 41.667 9.86 6.40 37.44 2.24
157 158 5.244626 TCTTACCCACTGTGAAGGTAGTAAC 59.755 44.000 9.86 0.00 37.44 2.50
158 159 3.311091 ACCCACTGTGAAGGTAGTAACA 58.689 45.455 9.86 0.00 30.13 2.41
159 160 3.908103 ACCCACTGTGAAGGTAGTAACAT 59.092 43.478 9.86 0.00 30.13 2.71
160 161 5.088730 ACCCACTGTGAAGGTAGTAACATA 58.911 41.667 9.86 0.00 30.13 2.29
161 162 5.187186 ACCCACTGTGAAGGTAGTAACATAG 59.813 44.000 9.86 0.00 30.13 2.23
162 163 5.187186 CCCACTGTGAAGGTAGTAACATAGT 59.813 44.000 9.86 0.00 35.71 2.12
163 164 6.331061 CCACTGTGAAGGTAGTAACATAGTC 58.669 44.000 9.86 0.00 33.76 2.59
164 165 6.153000 CCACTGTGAAGGTAGTAACATAGTCT 59.847 42.308 9.86 0.00 33.76 3.24
165 166 7.338703 CCACTGTGAAGGTAGTAACATAGTCTA 59.661 40.741 9.86 0.00 33.76 2.59
166 167 8.399425 CACTGTGAAGGTAGTAACATAGTCTAG 58.601 40.741 0.32 0.00 33.76 2.43
167 168 8.327271 ACTGTGAAGGTAGTAACATAGTCTAGA 58.673 37.037 0.00 0.00 31.22 2.43
168 169 9.175312 CTGTGAAGGTAGTAACATAGTCTAGAA 57.825 37.037 0.00 0.00 0.00 2.10
169 170 9.524496 TGTGAAGGTAGTAACATAGTCTAGAAA 57.476 33.333 0.00 0.00 0.00 2.52
201 202 9.786105 GTAAGTTACTAGACTATGTTCTTGTCC 57.214 37.037 5.75 0.00 34.13 4.02
202 203 8.418597 AAGTTACTAGACTATGTTCTTGTCCA 57.581 34.615 0.00 0.00 34.13 4.02
203 204 8.596781 AGTTACTAGACTATGTTCTTGTCCAT 57.403 34.615 0.00 0.00 34.13 3.41
204 205 9.036980 AGTTACTAGACTATGTTCTTGTCCATT 57.963 33.333 0.00 0.00 34.13 3.16
205 206 9.088512 GTTACTAGACTATGTTCTTGTCCATTG 57.911 37.037 0.00 0.00 34.13 2.82
206 207 7.246171 ACTAGACTATGTTCTTGTCCATTGT 57.754 36.000 0.00 0.00 30.87 2.71
207 208 7.099764 ACTAGACTATGTTCTTGTCCATTGTG 58.900 38.462 0.00 0.00 30.87 3.33
208 209 6.114187 AGACTATGTTCTTGTCCATTGTGA 57.886 37.500 0.00 0.00 30.87 3.58
209 210 5.934625 AGACTATGTTCTTGTCCATTGTGAC 59.065 40.000 0.00 0.00 35.77 3.67
210 211 5.003804 ACTATGTTCTTGTCCATTGTGACC 58.996 41.667 3.74 0.00 34.25 4.02
211 212 3.289407 TGTTCTTGTCCATTGTGACCA 57.711 42.857 3.74 0.00 34.25 4.02
212 213 3.213506 TGTTCTTGTCCATTGTGACCAG 58.786 45.455 3.74 2.88 34.25 4.00
213 214 1.896220 TCTTGTCCATTGTGACCAGC 58.104 50.000 3.74 0.00 34.25 4.85
214 215 0.883833 CTTGTCCATTGTGACCAGCC 59.116 55.000 3.74 0.00 34.25 4.85
215 216 0.478072 TTGTCCATTGTGACCAGCCT 59.522 50.000 3.74 0.00 34.25 4.58
216 217 0.478072 TGTCCATTGTGACCAGCCTT 59.522 50.000 3.74 0.00 34.25 4.35
217 218 1.702401 TGTCCATTGTGACCAGCCTTA 59.298 47.619 3.74 0.00 34.25 2.69
218 219 2.107378 TGTCCATTGTGACCAGCCTTAA 59.893 45.455 3.74 0.00 34.25 1.85
231 232 4.644685 ACCAGCCTTAATTGATTTACGCAT 59.355 37.500 0.00 0.00 0.00 4.73
410 424 5.319453 GGCTGGAATCATATCAATCCTTGA 58.681 41.667 0.00 0.00 45.01 3.02
450 466 9.318041 GTGCATTATATCGCTAATTAGTTTGTG 57.682 33.333 13.91 4.54 0.00 3.33
589 619 6.625362 TGCATCAGCGTCCAAAAATAAATAA 58.375 32.000 0.00 0.00 46.23 1.40
601 631 7.279090 TCCAAAAATAAATAACGATCGAGCTGA 59.721 33.333 24.34 2.39 0.00 4.26
617 647 1.005748 TGAAGAGAGTGCACGGCAG 60.006 57.895 12.01 0.00 40.08 4.85
636 678 4.383118 GGCAGACATACTTGTATGGACTGT 60.383 45.833 27.96 13.63 43.68 3.55
637 679 5.163447 GGCAGACATACTTGTATGGACTGTA 60.163 44.000 27.96 0.00 43.68 2.74
638 680 5.980116 GCAGACATACTTGTATGGACTGTAG 59.020 44.000 27.96 16.79 43.68 2.74
639 681 6.405953 GCAGACATACTTGTATGGACTGTAGT 60.406 42.308 27.96 11.15 43.68 2.73
640 682 6.975197 CAGACATACTTGTATGGACTGTAGTG 59.025 42.308 24.24 12.15 40.58 2.74
641 683 5.661458 ACATACTTGTATGGACTGTAGTGC 58.339 41.667 20.56 0.00 33.16 4.40
642 684 5.422331 ACATACTTGTATGGACTGTAGTGCT 59.578 40.000 20.56 0.00 34.07 4.40
643 685 4.193826 ACTTGTATGGACTGTAGTGCTG 57.806 45.455 5.16 0.00 37.28 4.41
644 686 3.055819 ACTTGTATGGACTGTAGTGCTGG 60.056 47.826 5.16 0.00 37.28 4.85
645 687 2.536066 TGTATGGACTGTAGTGCTGGT 58.464 47.619 5.16 0.00 37.28 4.00
646 688 2.233676 TGTATGGACTGTAGTGCTGGTG 59.766 50.000 5.16 0.00 37.28 4.17
717 759 2.798262 GGTCGTCCGTTCGTGTCG 60.798 66.667 0.00 0.00 0.00 4.35
723 765 1.300080 TCCGTTCGTGTCGTTTCCC 60.300 57.895 0.00 0.00 0.00 3.97
771 1573 3.134127 GACCCCGACTTGCATGGC 61.134 66.667 4.44 0.00 0.00 4.40
777 1579 4.527157 GACTTGCATGGCGCGCTC 62.527 66.667 32.29 21.22 46.97 5.03
815 1617 1.103398 CGATTCTTCCCCATGTGCCC 61.103 60.000 0.00 0.00 0.00 5.36
816 1618 1.076777 ATTCTTCCCCATGTGCCCG 60.077 57.895 0.00 0.00 0.00 6.13
817 1619 3.936772 TTCTTCCCCATGTGCCCGC 62.937 63.158 0.00 0.00 0.00 6.13
907 1714 1.152881 CCCCATGCTTCCTACAGCC 60.153 63.158 0.00 0.00 39.25 4.85
934 1745 2.202544 CTCACTCGCCTCAGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
936 1747 4.056125 CACTCGCCTCAGTCGCCA 62.056 66.667 0.00 0.00 0.00 5.69
995 1806 0.931005 GCTAGCTCACACCGCATAAC 59.069 55.000 7.70 0.00 0.00 1.89
1042 1853 3.075005 GCCGGTACCAGAGGCTGA 61.075 66.667 19.02 0.00 46.83 4.26
1412 2232 3.322466 CACCGGCTCCCTTCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
1416 2236 1.376037 CGGCTCCCTTCCTGTTCAC 60.376 63.158 0.00 0.00 0.00 3.18
1485 2305 5.177326 CAAGAGAGAATCAGTTCTTGGAGG 58.823 45.833 11.18 0.00 44.57 4.30
1496 2316 2.698274 GTTCTTGGAGGAGAGGAGATCC 59.302 54.545 0.00 0.00 37.07 3.36
1508 2331 1.625818 AGGAGATCCCGTGGCATATTC 59.374 52.381 0.00 0.00 40.87 1.75
1534 2357 0.250124 ATCACGCGTGGTGGAAGAAA 60.250 50.000 36.41 16.29 46.96 2.52
1660 2486 4.292977 GGAGAGTTCCTTGTTGTTGTTG 57.707 45.455 0.00 0.00 40.58 3.33
1663 2489 5.059404 AGAGTTCCTTGTTGTTGTTGTTG 57.941 39.130 0.00 0.00 0.00 3.33
1666 2492 4.987912 AGTTCCTTGTTGTTGTTGTTGTTG 59.012 37.500 0.00 0.00 0.00 3.33
1667 2493 4.592485 TCCTTGTTGTTGTTGTTGTTGT 57.408 36.364 0.00 0.00 0.00 3.32
1668 2494 4.950050 TCCTTGTTGTTGTTGTTGTTGTT 58.050 34.783 0.00 0.00 0.00 2.83
1669 2495 4.747108 TCCTTGTTGTTGTTGTTGTTGTTG 59.253 37.500 0.00 0.00 0.00 3.33
1670 2496 4.509600 CCTTGTTGTTGTTGTTGTTGTTGT 59.490 37.500 0.00 0.00 0.00 3.32
1671 2497 5.007136 CCTTGTTGTTGTTGTTGTTGTTGTT 59.993 36.000 0.00 0.00 0.00 2.83
1673 2499 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1675 2501 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1676 2502 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1678 2504 6.128282 TGTTGTTGTTGTTGTTGTTGTTGTTT 60.128 30.769 0.00 0.00 0.00 2.83
1681 4109 6.961554 TGTTGTTGTTGTTGTTGTTGTTTTTC 59.038 30.769 0.00 0.00 0.00 2.29
1684 4112 7.402640 TGTTGTTGTTGTTGTTGTTTTTCTTC 58.597 30.769 0.00 0.00 0.00 2.87
1749 4177 2.093890 TGGCCTAAGCATCATGTGTTG 58.906 47.619 3.32 0.00 42.56 3.33
1750 4178 1.202336 GGCCTAAGCATCATGTGTTGC 60.202 52.381 0.00 7.75 42.56 4.17
1752 4180 2.945008 GCCTAAGCATCATGTGTTGCTA 59.055 45.455 16.41 6.90 46.80 3.49
1828 4256 1.416772 GATAACCCCCTGCCTCTACAC 59.583 57.143 0.00 0.00 0.00 2.90
1967 4766 2.549198 CCGGCCACTACTCGCGATA 61.549 63.158 10.36 3.60 0.00 2.92
2016 4815 2.584835 AGTGGCATGTTTGGAAGCTA 57.415 45.000 0.00 0.00 0.00 3.32
2059 4858 7.575414 TTGTTGCTCCAGTAGTAAATTTCAA 57.425 32.000 0.00 0.00 31.05 2.69
2134 4945 0.895530 GGATGAAGGAGTGTGGACGA 59.104 55.000 0.00 0.00 0.00 4.20
2166 4977 4.329545 GGGACGAGTGCCAGCCAA 62.330 66.667 8.95 0.00 41.16 4.52
2233 5049 2.359975 GTCCGGAACTTGGCAGGG 60.360 66.667 5.23 0.00 0.00 4.45
2234 5050 2.852075 TCCGGAACTTGGCAGGGT 60.852 61.111 0.00 0.00 0.00 4.34
2235 5051 2.359975 CCGGAACTTGGCAGGGTC 60.360 66.667 6.03 6.03 0.00 4.46
2236 5052 2.429930 CGGAACTTGGCAGGGTCA 59.570 61.111 16.97 0.00 0.00 4.02
2237 5053 1.966451 CGGAACTTGGCAGGGTCAC 60.966 63.158 16.97 5.14 0.00 3.67
2238 5054 1.603739 GGAACTTGGCAGGGTCACC 60.604 63.158 16.97 9.29 0.00 4.02
2239 5055 1.966451 GAACTTGGCAGGGTCACCG 60.966 63.158 10.10 0.00 43.47 4.94
2240 5056 3.491598 AACTTGGCAGGGTCACCGG 62.492 63.158 0.00 0.00 43.47 5.28
2241 5057 3.636231 CTTGGCAGGGTCACCGGA 61.636 66.667 9.46 0.00 43.47 5.14
2242 5058 3.172106 TTGGCAGGGTCACCGGAA 61.172 61.111 9.46 0.00 43.47 4.30
2243 5059 2.484287 CTTGGCAGGGTCACCGGAAT 62.484 60.000 9.46 0.00 43.47 3.01
2244 5060 2.075355 TTGGCAGGGTCACCGGAATT 62.075 55.000 9.46 0.00 43.47 2.17
2245 5061 2.046285 GGCAGGGTCACCGGAATTG 61.046 63.158 9.46 0.00 43.47 2.32
2246 5062 1.303317 GCAGGGTCACCGGAATTGT 60.303 57.895 9.46 0.00 43.47 2.71
2247 5063 0.893727 GCAGGGTCACCGGAATTGTT 60.894 55.000 9.46 0.00 43.47 2.83
2248 5064 0.881118 CAGGGTCACCGGAATTGTTG 59.119 55.000 9.46 0.00 43.47 3.33
2249 5065 0.893727 AGGGTCACCGGAATTGTTGC 60.894 55.000 9.46 0.00 43.47 4.17
2250 5066 1.175983 GGGTCACCGGAATTGTTGCA 61.176 55.000 9.46 0.00 0.00 4.08
2251 5067 0.240945 GGTCACCGGAATTGTTGCAG 59.759 55.000 9.46 0.00 0.00 4.41
2252 5068 0.240945 GTCACCGGAATTGTTGCAGG 59.759 55.000 9.46 0.00 0.00 4.85
2253 5069 0.179004 TCACCGGAATTGTTGCAGGT 60.179 50.000 9.46 0.00 0.00 4.00
2254 5070 0.240945 CACCGGAATTGTTGCAGGTC 59.759 55.000 9.46 0.00 0.00 3.85
2255 5071 0.179004 ACCGGAATTGTTGCAGGTCA 60.179 50.000 9.46 0.00 0.00 4.02
2256 5072 0.523072 CCGGAATTGTTGCAGGTCAG 59.477 55.000 0.00 0.00 0.00 3.51
2257 5073 0.523072 CGGAATTGTTGCAGGTCAGG 59.477 55.000 0.00 0.00 0.00 3.86
2258 5074 0.890683 GGAATTGTTGCAGGTCAGGG 59.109 55.000 0.00 0.00 0.00 4.45
2259 5075 0.890683 GAATTGTTGCAGGTCAGGGG 59.109 55.000 0.00 0.00 0.00 4.79
2260 5076 0.542702 AATTGTTGCAGGTCAGGGGG 60.543 55.000 0.00 0.00 0.00 5.40
2261 5077 1.434513 ATTGTTGCAGGTCAGGGGGA 61.435 55.000 0.00 0.00 0.00 4.81
2262 5078 2.067932 TTGTTGCAGGTCAGGGGGAG 62.068 60.000 0.00 0.00 0.00 4.30
2263 5079 2.935481 TTGCAGGTCAGGGGGAGG 60.935 66.667 0.00 0.00 0.00 4.30
2280 5096 3.746957 GGGGGCTCAGAGGATTGT 58.253 61.111 0.00 0.00 0.00 2.71
2281 5097 1.529309 GGGGGCTCAGAGGATTGTC 59.471 63.158 0.00 0.00 0.00 3.18
2282 5098 1.144936 GGGGCTCAGAGGATTGTCG 59.855 63.158 0.00 0.00 0.00 4.35
2283 5099 1.522580 GGGCTCAGAGGATTGTCGC 60.523 63.158 0.00 0.00 0.00 5.19
2284 5100 1.880340 GGCTCAGAGGATTGTCGCG 60.880 63.158 0.00 0.00 0.00 5.87
2285 5101 1.880340 GCTCAGAGGATTGTCGCGG 60.880 63.158 6.13 0.00 0.00 6.46
2286 5102 1.513158 CTCAGAGGATTGTCGCGGT 59.487 57.895 6.13 0.00 0.00 5.68
2287 5103 0.803768 CTCAGAGGATTGTCGCGGTG 60.804 60.000 6.13 0.00 0.00 4.94
2288 5104 1.811266 CAGAGGATTGTCGCGGTGG 60.811 63.158 6.13 0.00 0.00 4.61
2289 5105 3.195698 GAGGATTGTCGCGGTGGC 61.196 66.667 6.13 0.00 0.00 5.01
2313 5129 2.819595 CAACGGCGGTCATGGGAG 60.820 66.667 13.24 0.00 0.00 4.30
2314 5130 4.096003 AACGGCGGTCATGGGAGG 62.096 66.667 13.24 0.00 0.00 4.30
2316 5132 4.096003 CGGCGGTCATGGGAGGTT 62.096 66.667 0.00 0.00 0.00 3.50
2317 5133 2.438434 GGCGGTCATGGGAGGTTG 60.438 66.667 0.00 0.00 0.00 3.77
2318 5134 2.668632 GCGGTCATGGGAGGTTGA 59.331 61.111 0.00 0.00 0.00 3.18
2319 5135 1.450312 GCGGTCATGGGAGGTTGAG 60.450 63.158 0.00 0.00 0.00 3.02
2320 5136 1.221840 CGGTCATGGGAGGTTGAGG 59.778 63.158 0.00 0.00 0.00 3.86
2321 5137 1.077429 GGTCATGGGAGGTTGAGGC 60.077 63.158 0.00 0.00 0.00 4.70
2322 5138 1.450312 GTCATGGGAGGTTGAGGCG 60.450 63.158 0.00 0.00 0.00 5.52
2323 5139 1.918293 TCATGGGAGGTTGAGGCGT 60.918 57.895 0.00 0.00 0.00 5.68
2324 5140 1.746615 CATGGGAGGTTGAGGCGTG 60.747 63.158 0.00 0.00 0.00 5.34
2325 5141 2.971598 ATGGGAGGTTGAGGCGTGG 61.972 63.158 0.00 0.00 0.00 4.94
2326 5142 4.410400 GGGAGGTTGAGGCGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
2327 5143 3.637273 GGAGGTTGAGGCGTGGGT 61.637 66.667 0.00 0.00 0.00 4.51
2328 5144 2.358737 GAGGTTGAGGCGTGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
2329 5145 3.901797 GAGGTTGAGGCGTGGGTGG 62.902 68.421 0.00 0.00 0.00 4.61
2343 5159 2.360600 GTGGGGCGGTGCACAATA 60.361 61.111 20.43 0.00 30.93 1.90
2344 5160 2.045438 TGGGGCGGTGCACAATAG 60.045 61.111 20.43 7.80 30.93 1.73
2345 5161 3.518068 GGGGCGGTGCACAATAGC 61.518 66.667 20.43 16.97 30.93 2.97
2346 5162 3.876198 GGGCGGTGCACAATAGCG 61.876 66.667 20.43 13.50 41.52 4.26
2349 5165 2.703409 CGGTGCACAATAGCGCTC 59.297 61.111 16.34 0.00 44.17 5.03
2350 5166 2.703409 GGTGCACAATAGCGCTCG 59.297 61.111 16.34 6.51 44.17 5.03
2351 5167 2.021931 GTGCACAATAGCGCTCGC 59.978 61.111 16.34 11.06 41.61 5.03
2352 5168 3.195002 TGCACAATAGCGCTCGCC 61.195 61.111 16.34 0.00 43.17 5.54
2353 5169 3.941836 GCACAATAGCGCTCGCCC 61.942 66.667 16.34 0.00 43.17 6.13
2354 5170 3.272334 CACAATAGCGCTCGCCCC 61.272 66.667 16.34 0.00 43.17 5.80
2355 5171 4.547367 ACAATAGCGCTCGCCCCC 62.547 66.667 16.34 0.00 43.17 5.40
2386 5202 4.796495 GGCAGGCGGTTGGGGTAG 62.796 72.222 0.00 0.00 0.00 3.18
2387 5203 4.796495 GCAGGCGGTTGGGGTAGG 62.796 72.222 0.00 0.00 0.00 3.18
2388 5204 4.109675 CAGGCGGTTGGGGTAGGG 62.110 72.222 0.00 0.00 0.00 3.53
2389 5205 4.669773 AGGCGGTTGGGGTAGGGT 62.670 66.667 0.00 0.00 0.00 4.34
2390 5206 4.419921 GGCGGTTGGGGTAGGGTG 62.420 72.222 0.00 0.00 0.00 4.61
2391 5207 4.419921 GCGGTTGGGGTAGGGTGG 62.420 72.222 0.00 0.00 0.00 4.61
2392 5208 3.723922 CGGTTGGGGTAGGGTGGG 61.724 72.222 0.00 0.00 0.00 4.61
2393 5209 2.533492 GGTTGGGGTAGGGTGGGT 60.533 66.667 0.00 0.00 0.00 4.51
2394 5210 2.761160 GTTGGGGTAGGGTGGGTG 59.239 66.667 0.00 0.00 0.00 4.61
2395 5211 2.533232 TTGGGGTAGGGTGGGTGG 60.533 66.667 0.00 0.00 0.00 4.61
2396 5212 4.686437 TGGGGTAGGGTGGGTGGG 62.686 72.222 0.00 0.00 0.00 4.61
2399 5215 3.261677 GGTAGGGTGGGTGGGCAA 61.262 66.667 0.00 0.00 0.00 4.52
2400 5216 2.035155 GTAGGGTGGGTGGGCAAC 59.965 66.667 0.00 0.00 0.00 4.17
2401 5217 2.121689 TAGGGTGGGTGGGCAACT 60.122 61.111 0.00 0.00 0.00 3.16
2402 5218 1.161355 TAGGGTGGGTGGGCAACTA 59.839 57.895 0.00 0.00 0.00 2.24
2409 5225 4.278956 GTGGGCAACTACGTGAGG 57.721 61.111 0.00 0.00 38.73 3.86
2410 5226 1.669440 GTGGGCAACTACGTGAGGA 59.331 57.895 0.00 0.00 38.73 3.71
2421 5237 1.938585 ACGTGAGGAGAAGAATGGGA 58.061 50.000 0.00 0.00 0.00 4.37
2422 5238 1.827969 ACGTGAGGAGAAGAATGGGAG 59.172 52.381 0.00 0.00 0.00 4.30
2423 5239 1.137872 CGTGAGGAGAAGAATGGGAGG 59.862 57.143 0.00 0.00 0.00 4.30
2424 5240 2.192263 GTGAGGAGAAGAATGGGAGGT 58.808 52.381 0.00 0.00 0.00 3.85
2425 5241 2.573915 GTGAGGAGAAGAATGGGAGGTT 59.426 50.000 0.00 0.00 0.00 3.50
2426 5242 2.573462 TGAGGAGAAGAATGGGAGGTTG 59.427 50.000 0.00 0.00 0.00 3.77
2427 5243 2.840651 GAGGAGAAGAATGGGAGGTTGA 59.159 50.000 0.00 0.00 0.00 3.18
2428 5244 3.260205 AGGAGAAGAATGGGAGGTTGAA 58.740 45.455 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.942850 TTCTCTCTTCATTAAATATGTGACACA 57.057 29.630 11.41 11.41 0.00 3.72
8 9 9.102757 GCACTTCTCTCTTCATTAAATATGTGA 57.897 33.333 0.00 0.00 0.00 3.58
9 10 9.107177 AGCACTTCTCTCTTCATTAAATATGTG 57.893 33.333 0.00 0.00 0.00 3.21
10 11 9.678260 AAGCACTTCTCTCTTCATTAAATATGT 57.322 29.630 0.00 0.00 0.00 2.29
11 12 9.932699 CAAGCACTTCTCTCTTCATTAAATATG 57.067 33.333 0.00 0.00 0.00 1.78
12 13 9.678260 ACAAGCACTTCTCTCTTCATTAAATAT 57.322 29.630 0.00 0.00 0.00 1.28
13 14 8.939929 CACAAGCACTTCTCTCTTCATTAAATA 58.060 33.333 0.00 0.00 0.00 1.40
14 15 7.094463 CCACAAGCACTTCTCTCTTCATTAAAT 60.094 37.037 0.00 0.00 0.00 1.40
15 16 6.205464 CCACAAGCACTTCTCTCTTCATTAAA 59.795 38.462 0.00 0.00 0.00 1.52
16 17 5.702670 CCACAAGCACTTCTCTCTTCATTAA 59.297 40.000 0.00 0.00 0.00 1.40
17 18 5.221722 ACCACAAGCACTTCTCTCTTCATTA 60.222 40.000 0.00 0.00 0.00 1.90
18 19 4.070716 CCACAAGCACTTCTCTCTTCATT 58.929 43.478 0.00 0.00 0.00 2.57
19 20 3.072184 ACCACAAGCACTTCTCTCTTCAT 59.928 43.478 0.00 0.00 0.00 2.57
20 21 2.435805 ACCACAAGCACTTCTCTCTTCA 59.564 45.455 0.00 0.00 0.00 3.02
21 22 3.118905 ACCACAAGCACTTCTCTCTTC 57.881 47.619 0.00 0.00 0.00 2.87
22 23 4.101741 AGTTACCACAAGCACTTCTCTCTT 59.898 41.667 0.00 0.00 0.00 2.85
23 24 3.643792 AGTTACCACAAGCACTTCTCTCT 59.356 43.478 0.00 0.00 0.00 3.10
24 25 3.996480 AGTTACCACAAGCACTTCTCTC 58.004 45.455 0.00 0.00 0.00 3.20
25 26 4.561734 GCTAGTTACCACAAGCACTTCTCT 60.562 45.833 0.00 0.00 35.05 3.10
26 27 3.680458 GCTAGTTACCACAAGCACTTCTC 59.320 47.826 0.00 0.00 35.05 2.87
27 28 3.325135 AGCTAGTTACCACAAGCACTTCT 59.675 43.478 0.00 0.00 37.44 2.85
28 29 3.665190 AGCTAGTTACCACAAGCACTTC 58.335 45.455 0.00 0.00 37.44 3.01
29 30 3.771577 AGCTAGTTACCACAAGCACTT 57.228 42.857 0.00 0.00 37.44 3.16
30 31 4.283722 ACTTAGCTAGTTACCACAAGCACT 59.716 41.667 0.00 0.00 37.44 4.40
31 32 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
32 33 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
41 42 6.377996 TGATGTTCCCGTAACTTAGCTAGTTA 59.622 38.462 10.09 10.09 45.22 2.24
43 44 4.708421 TGATGTTCCCGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
44 45 5.041940 GTGATGTTCCCGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
45 46 4.463539 TGTGATGTTCCCGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
46 47 3.259876 TGTGATGTTCCCGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
47 48 3.370061 GTGTGATGTTCCCGTAACTTAGC 59.630 47.826 0.37 0.00 38.99 3.09
48 49 4.387862 GTGTGTGATGTTCCCGTAACTTAG 59.612 45.833 0.37 0.00 38.99 2.18
49 50 4.039488 AGTGTGTGATGTTCCCGTAACTTA 59.961 41.667 0.37 0.00 38.99 2.24
50 51 3.135994 GTGTGTGATGTTCCCGTAACTT 58.864 45.455 0.37 0.00 38.99 2.66
51 52 2.367567 AGTGTGTGATGTTCCCGTAACT 59.632 45.455 0.37 0.00 38.99 2.24
52 53 2.735134 GAGTGTGTGATGTTCCCGTAAC 59.265 50.000 0.00 0.00 38.67 2.50
53 54 2.289195 GGAGTGTGTGATGTTCCCGTAA 60.289 50.000 0.00 0.00 0.00 3.18
54 55 1.274167 GGAGTGTGTGATGTTCCCGTA 59.726 52.381 0.00 0.00 0.00 4.02
55 56 0.034896 GGAGTGTGTGATGTTCCCGT 59.965 55.000 0.00 0.00 0.00 5.28
56 57 0.034756 TGGAGTGTGTGATGTTCCCG 59.965 55.000 0.00 0.00 0.00 5.14
57 58 2.154462 CTTGGAGTGTGTGATGTTCCC 58.846 52.381 0.00 0.00 0.00 3.97
58 59 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
59 60 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
60 61 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
61 62 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
62 63 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
63 64 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
64 65 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
65 66 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
66 67 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
67 68 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
68 69 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
69 70 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
70 71 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
71 72 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
72 73 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
73 74 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
105 106 8.996271 CATCTATGTAGTGTCATGCAATAATGT 58.004 33.333 0.00 0.00 28.84 2.71
106 107 8.996271 ACATCTATGTAGTGTCATGCAATAATG 58.004 33.333 0.00 0.00 39.68 1.90
107 108 9.565090 AACATCTATGTAGTGTCATGCAATAAT 57.435 29.630 0.00 0.00 40.80 1.28
108 109 8.962884 AACATCTATGTAGTGTCATGCAATAA 57.037 30.769 0.00 0.00 40.80 1.40
109 110 8.424133 AGAACATCTATGTAGTGTCATGCAATA 58.576 33.333 0.00 0.00 40.80 1.90
110 111 7.278135 AGAACATCTATGTAGTGTCATGCAAT 58.722 34.615 0.00 0.00 40.80 3.56
111 112 6.643388 AGAACATCTATGTAGTGTCATGCAA 58.357 36.000 0.00 0.00 40.80 4.08
112 113 6.225981 AGAACATCTATGTAGTGTCATGCA 57.774 37.500 0.00 0.00 40.80 3.96
113 114 7.169982 GGTAAGAACATCTATGTAGTGTCATGC 59.830 40.741 0.00 0.00 40.80 4.06
114 115 7.653713 GGGTAAGAACATCTATGTAGTGTCATG 59.346 40.741 0.00 0.00 40.80 3.07
115 116 7.344612 TGGGTAAGAACATCTATGTAGTGTCAT 59.655 37.037 0.00 0.00 40.80 3.06
116 117 6.666113 TGGGTAAGAACATCTATGTAGTGTCA 59.334 38.462 0.00 0.00 40.80 3.58
117 118 6.979238 GTGGGTAAGAACATCTATGTAGTGTC 59.021 42.308 0.00 0.00 40.80 3.67
118 119 6.668283 AGTGGGTAAGAACATCTATGTAGTGT 59.332 38.462 0.00 0.00 40.80 3.55
119 120 6.980978 CAGTGGGTAAGAACATCTATGTAGTG 59.019 42.308 0.00 0.00 40.80 2.74
120 121 6.668283 ACAGTGGGTAAGAACATCTATGTAGT 59.332 38.462 0.00 0.00 40.80 2.73
121 122 6.980978 CACAGTGGGTAAGAACATCTATGTAG 59.019 42.308 0.00 0.00 40.80 2.74
122 123 6.666113 TCACAGTGGGTAAGAACATCTATGTA 59.334 38.462 0.00 0.00 40.80 2.29
123 124 5.483937 TCACAGTGGGTAAGAACATCTATGT 59.516 40.000 0.00 0.00 44.20 2.29
124 125 5.977635 TCACAGTGGGTAAGAACATCTATG 58.022 41.667 0.00 0.00 0.00 2.23
125 126 6.352222 CCTTCACAGTGGGTAAGAACATCTAT 60.352 42.308 0.00 0.00 0.00 1.98
126 127 5.046591 CCTTCACAGTGGGTAAGAACATCTA 60.047 44.000 0.00 0.00 0.00 1.98
127 128 4.263068 CCTTCACAGTGGGTAAGAACATCT 60.263 45.833 0.00 0.00 0.00 2.90
128 129 4.003648 CCTTCACAGTGGGTAAGAACATC 58.996 47.826 0.00 0.00 0.00 3.06
129 130 3.394606 ACCTTCACAGTGGGTAAGAACAT 59.605 43.478 0.00 0.00 0.00 2.71
130 131 2.775384 ACCTTCACAGTGGGTAAGAACA 59.225 45.455 0.00 0.00 0.00 3.18
131 132 3.487120 ACCTTCACAGTGGGTAAGAAC 57.513 47.619 0.00 0.00 0.00 3.01
132 133 4.228824 ACTACCTTCACAGTGGGTAAGAA 58.771 43.478 9.32 0.00 35.51 2.52
133 134 3.853207 ACTACCTTCACAGTGGGTAAGA 58.147 45.455 9.32 0.00 35.51 2.10
134 135 5.011329 TGTTACTACCTTCACAGTGGGTAAG 59.989 44.000 9.32 2.69 35.51 2.34
135 136 4.900652 TGTTACTACCTTCACAGTGGGTAA 59.099 41.667 9.32 4.20 35.51 2.85
136 137 4.482030 TGTTACTACCTTCACAGTGGGTA 58.518 43.478 0.00 4.71 34.86 3.69
137 138 3.311091 TGTTACTACCTTCACAGTGGGT 58.689 45.455 0.00 3.68 37.16 4.51
138 139 4.553330 ATGTTACTACCTTCACAGTGGG 57.447 45.455 0.00 0.00 0.00 4.61
139 140 6.153000 AGACTATGTTACTACCTTCACAGTGG 59.847 42.308 0.00 0.00 0.00 4.00
140 141 7.159322 AGACTATGTTACTACCTTCACAGTG 57.841 40.000 0.00 0.00 0.00 3.66
141 142 8.327271 TCTAGACTATGTTACTACCTTCACAGT 58.673 37.037 0.00 0.00 0.00 3.55
142 143 8.734218 TCTAGACTATGTTACTACCTTCACAG 57.266 38.462 0.00 0.00 0.00 3.66
143 144 9.524496 TTTCTAGACTATGTTACTACCTTCACA 57.476 33.333 0.00 0.00 0.00 3.58
175 176 9.786105 GGACAAGAACATAGTCTAGTAACTTAC 57.214 37.037 0.00 0.00 32.98 2.34
176 177 9.524496 TGGACAAGAACATAGTCTAGTAACTTA 57.476 33.333 0.00 0.00 32.98 2.24
177 178 8.418597 TGGACAAGAACATAGTCTAGTAACTT 57.581 34.615 0.00 0.00 32.98 2.66
178 179 8.596781 ATGGACAAGAACATAGTCTAGTAACT 57.403 34.615 0.00 0.00 32.98 2.24
179 180 9.088512 CAATGGACAAGAACATAGTCTAGTAAC 57.911 37.037 0.00 0.00 32.98 2.50
180 181 8.812972 ACAATGGACAAGAACATAGTCTAGTAA 58.187 33.333 0.00 0.00 32.98 2.24
181 182 8.251026 CACAATGGACAAGAACATAGTCTAGTA 58.749 37.037 0.00 0.00 32.98 1.82
182 183 7.039011 TCACAATGGACAAGAACATAGTCTAGT 60.039 37.037 0.00 0.00 32.98 2.57
183 184 7.276658 GTCACAATGGACAAGAACATAGTCTAG 59.723 40.741 0.00 0.00 37.73 2.43
184 185 7.097192 GTCACAATGGACAAGAACATAGTCTA 58.903 38.462 0.00 0.00 37.73 2.59
185 186 5.934625 GTCACAATGGACAAGAACATAGTCT 59.065 40.000 0.00 0.00 37.73 3.24
186 187 5.122396 GGTCACAATGGACAAGAACATAGTC 59.878 44.000 4.71 0.00 39.59 2.59
187 188 5.003804 GGTCACAATGGACAAGAACATAGT 58.996 41.667 4.71 0.00 39.59 2.12
188 189 5.003160 TGGTCACAATGGACAAGAACATAG 58.997 41.667 4.71 0.00 39.59 2.23
189 190 4.979335 TGGTCACAATGGACAAGAACATA 58.021 39.130 4.71 0.00 39.59 2.29
190 191 3.822735 CTGGTCACAATGGACAAGAACAT 59.177 43.478 1.51 0.00 40.63 2.71
191 192 3.213506 CTGGTCACAATGGACAAGAACA 58.786 45.455 1.51 0.00 40.63 3.18
192 193 2.030805 GCTGGTCACAATGGACAAGAAC 60.031 50.000 9.48 0.00 40.63 3.01
193 194 2.229792 GCTGGTCACAATGGACAAGAA 58.770 47.619 9.48 0.00 40.63 2.52
194 195 1.545428 GGCTGGTCACAATGGACAAGA 60.545 52.381 9.48 0.00 40.63 3.02
195 196 0.883833 GGCTGGTCACAATGGACAAG 59.116 55.000 2.99 2.99 41.03 3.16
196 197 0.478072 AGGCTGGTCACAATGGACAA 59.522 50.000 0.00 0.00 39.59 3.18
197 198 0.478072 AAGGCTGGTCACAATGGACA 59.522 50.000 0.00 0.00 39.59 4.02
198 199 2.489938 TAAGGCTGGTCACAATGGAC 57.510 50.000 0.00 0.00 37.06 4.02
199 200 3.737559 ATTAAGGCTGGTCACAATGGA 57.262 42.857 0.00 0.00 0.00 3.41
200 201 3.763360 TCAATTAAGGCTGGTCACAATGG 59.237 43.478 0.00 0.00 0.00 3.16
201 202 5.587388 ATCAATTAAGGCTGGTCACAATG 57.413 39.130 0.00 0.00 0.00 2.82
202 203 6.610075 AAATCAATTAAGGCTGGTCACAAT 57.390 33.333 0.00 0.00 0.00 2.71
203 204 6.348950 CGTAAATCAATTAAGGCTGGTCACAA 60.349 38.462 0.00 0.00 0.00 3.33
204 205 5.123186 CGTAAATCAATTAAGGCTGGTCACA 59.877 40.000 0.00 0.00 0.00 3.58
205 206 5.569413 CGTAAATCAATTAAGGCTGGTCAC 58.431 41.667 0.00 0.00 0.00 3.67
206 207 4.095782 GCGTAAATCAATTAAGGCTGGTCA 59.904 41.667 0.00 0.00 0.00 4.02
207 208 4.095782 TGCGTAAATCAATTAAGGCTGGTC 59.904 41.667 0.00 0.00 0.00 4.02
208 209 4.013728 TGCGTAAATCAATTAAGGCTGGT 58.986 39.130 0.00 0.00 0.00 4.00
209 210 4.630894 TGCGTAAATCAATTAAGGCTGG 57.369 40.909 0.00 0.00 0.00 4.85
210 211 8.075574 TGATTATGCGTAAATCAATTAAGGCTG 58.924 33.333 1.76 0.00 39.70 4.85
211 212 8.165239 TGATTATGCGTAAATCAATTAAGGCT 57.835 30.769 1.76 0.00 39.70 4.58
212 213 8.795786 TTGATTATGCGTAAATCAATTAAGGC 57.204 30.769 13.72 0.00 44.39 4.35
231 232 5.732633 CATGGCCACCTCAAAATTTGATTA 58.267 37.500 8.16 0.00 39.30 1.75
450 466 2.543012 CAGATCCATGACATCGTTGAGC 59.457 50.000 0.00 0.00 0.00 4.26
526 554 1.752501 CGGCCGTGATCACTTTAGCG 61.753 60.000 22.95 9.07 0.00 4.26
528 556 1.927174 CTTCGGCCGTGATCACTTTAG 59.073 52.381 27.15 12.05 0.00 1.85
538 566 3.744749 TACGCGATCTTCGGCCGTG 62.745 63.158 27.15 19.13 38.57 4.94
589 619 1.400142 CACTCTCTTCAGCTCGATCGT 59.600 52.381 15.94 0.00 0.00 3.73
601 631 1.005630 GTCTGCCGTGCACTCTCTT 60.006 57.895 16.19 0.00 33.79 2.85
617 647 5.749109 GCACTACAGTCCATACAAGTATGTC 59.251 44.000 16.53 10.45 40.90 3.06
636 678 1.965930 CTTTGCGCCACCAGCACTA 60.966 57.895 4.18 0.00 45.10 2.74
637 679 3.289834 CTTTGCGCCACCAGCACT 61.290 61.111 4.18 0.00 45.10 4.40
640 682 4.060038 ATGCTTTGCGCCACCAGC 62.060 61.111 4.18 7.64 38.05 4.85
641 683 2.126228 CATGCTTTGCGCCACCAG 60.126 61.111 4.18 0.00 38.05 4.00
642 684 2.911509 ACATGCTTTGCGCCACCA 60.912 55.556 4.18 0.00 38.05 4.17
643 685 2.431260 CACATGCTTTGCGCCACC 60.431 61.111 4.18 0.00 38.05 4.61
644 686 1.730547 GACACATGCTTTGCGCCAC 60.731 57.895 4.18 0.00 38.05 5.01
645 687 1.732417 TTGACACATGCTTTGCGCCA 61.732 50.000 4.18 0.00 38.05 5.69
646 688 0.597118 TTTGACACATGCTTTGCGCC 60.597 50.000 4.18 0.00 38.05 6.53
706 748 2.312436 GGGGAAACGACACGAACGG 61.312 63.158 0.00 0.00 34.93 4.44
711 753 4.973055 TGGCGGGGAAACGACACG 62.973 66.667 0.00 0.00 46.40 4.49
717 759 3.780902 CATAAGAAAATGGCGGGGAAAC 58.219 45.455 0.00 0.00 0.00 2.78
723 765 1.597937 GCGAGCATAAGAAAATGGCGG 60.598 52.381 0.00 0.00 0.00 6.13
787 1589 3.564027 GAAGAATCGTGGCGGCCG 61.564 66.667 24.05 24.05 0.00 6.13
788 1590 3.202706 GGAAGAATCGTGGCGGCC 61.203 66.667 13.32 13.32 0.00 6.13
789 1591 3.202706 GGGAAGAATCGTGGCGGC 61.203 66.667 0.00 0.00 0.00 6.53
790 1592 2.513897 GGGGAAGAATCGTGGCGG 60.514 66.667 0.00 0.00 0.00 6.13
815 1617 3.304391 CCATTATTGGGAATACGTTGGCG 60.304 47.826 0.00 0.00 39.56 5.69
816 1618 3.886505 TCCATTATTGGGAATACGTTGGC 59.113 43.478 0.00 0.00 43.81 4.52
817 1619 5.009610 CCTTCCATTATTGGGAATACGTTGG 59.990 44.000 0.00 0.00 43.16 3.77
818 1620 5.009610 CCCTTCCATTATTGGGAATACGTTG 59.990 44.000 0.00 0.00 43.16 4.10
842 1644 9.035607 CACGTATATATAAGCCTGGATGAAATC 57.964 37.037 0.00 0.00 44.55 2.17
907 1714 2.101965 CGAGTGAGCGAGCTCTGG 59.898 66.667 23.39 8.32 43.12 3.86
1177 1997 2.513204 CACCCGCATCAGCCTCAG 60.513 66.667 0.00 0.00 37.52 3.35
1287 2107 2.581354 CCCCACTGCGAGGAGAAG 59.419 66.667 0.00 0.00 0.00 2.85
1359 2179 1.035932 TCTCGAGGTAGAAAGCCCGG 61.036 60.000 13.56 0.00 0.00 5.73
1412 2232 2.094803 CGCCATTAATGTTGCTGGTGAA 60.095 45.455 14.25 0.00 40.86 3.18
1416 2236 0.528249 GCCGCCATTAATGTTGCTGG 60.528 55.000 14.25 15.32 0.00 4.85
1445 2265 3.351740 TCTTGCATGGCGAAATTTAGGA 58.648 40.909 0.00 0.00 0.00 2.94
1485 2305 1.118356 ATGCCACGGGATCTCCTCTC 61.118 60.000 0.00 0.00 35.95 3.20
1496 2316 0.249447 TCAGCTCGAATATGCCACGG 60.249 55.000 0.00 0.00 0.00 4.94
1508 2331 3.250323 CCACGCGTGATCAGCTCG 61.250 66.667 39.10 16.75 36.63 5.03
1534 2357 0.904394 AAAGCCGGCCATGGACAATT 60.904 50.000 26.15 5.68 0.00 2.32
1648 2474 5.649602 ACAACAACAACAACAACAACAAG 57.350 34.783 0.00 0.00 0.00 3.16
1660 2486 6.568238 CGAAGAAAAACAACAACAACAACAAC 59.432 34.615 0.00 0.00 0.00 3.32
1663 2489 6.441099 TCGAAGAAAAACAACAACAACAAC 57.559 33.333 0.00 0.00 0.00 3.32
1666 2492 8.318167 CCTTATTCGAAGAAAAACAACAACAAC 58.682 33.333 6.68 0.00 45.90 3.32
1667 2493 8.244802 TCCTTATTCGAAGAAAAACAACAACAA 58.755 29.630 6.68 0.00 45.90 2.83
1668 2494 7.763356 TCCTTATTCGAAGAAAAACAACAACA 58.237 30.769 6.68 0.00 45.90 3.33
1669 2495 8.126700 TCTCCTTATTCGAAGAAAAACAACAAC 58.873 33.333 6.68 0.00 45.90 3.32
1670 2496 8.215926 TCTCCTTATTCGAAGAAAAACAACAA 57.784 30.769 6.68 0.00 45.90 2.83
1671 2497 7.497909 ACTCTCCTTATTCGAAGAAAAACAACA 59.502 33.333 6.68 0.00 45.90 3.33
1673 2499 7.172703 GGACTCTCCTTATTCGAAGAAAAACAA 59.827 37.037 6.68 0.00 35.80 2.83
1675 2501 6.649557 TGGACTCTCCTTATTCGAAGAAAAAC 59.350 38.462 6.68 0.00 38.75 2.43
1676 2502 6.765403 TGGACTCTCCTTATTCGAAGAAAAA 58.235 36.000 6.68 0.00 38.75 1.94
1678 2504 5.995565 TGGACTCTCCTTATTCGAAGAAA 57.004 39.130 6.68 1.35 38.75 2.52
1681 4109 5.665459 ACATTGGACTCTCCTTATTCGAAG 58.335 41.667 3.35 0.00 37.46 3.79
1684 4112 5.178797 ACAACATTGGACTCTCCTTATTCG 58.821 41.667 0.00 0.00 37.46 3.34
1749 4177 7.513371 TCCAAAACTAGATACTAGAGCTAGC 57.487 40.000 6.62 6.62 46.36 3.42
1828 4256 3.857854 GCTGTGTGCATCGCTCGG 61.858 66.667 0.00 0.00 42.31 4.63
1929 4728 1.077429 GCATCCCCGGAGAAGCTTT 60.077 57.895 5.88 0.00 0.00 3.51
1952 4751 1.872313 AGTACTATCGCGAGTAGTGGC 59.128 52.381 27.03 21.60 34.84 5.01
1967 4766 6.229936 TGCACCGGATAGAAATAAAGTACT 57.770 37.500 9.46 0.00 0.00 2.73
2059 4858 1.053424 TTCTAGGCACCCAAACGAGT 58.947 50.000 0.00 0.00 0.00 4.18
2084 4895 1.670087 CGGAAGAAGTGACTGACGCAT 60.670 52.381 0.00 0.00 0.00 4.73
2219 5035 1.966451 GTGACCCTGCCAAGTTCCG 60.966 63.158 0.00 0.00 0.00 4.30
2221 5037 1.966451 CGGTGACCCTGCCAAGTTC 60.966 63.158 0.00 0.00 0.00 3.01
2233 5049 0.240945 CCTGCAACAATTCCGGTGAC 59.759 55.000 0.00 0.00 0.00 3.67
2234 5050 0.179004 ACCTGCAACAATTCCGGTGA 60.179 50.000 0.00 0.00 0.00 4.02
2235 5051 0.240945 GACCTGCAACAATTCCGGTG 59.759 55.000 0.00 0.00 0.00 4.94
2236 5052 0.179004 TGACCTGCAACAATTCCGGT 60.179 50.000 0.00 0.00 0.00 5.28
2237 5053 0.523072 CTGACCTGCAACAATTCCGG 59.477 55.000 0.00 0.00 0.00 5.14
2238 5054 0.523072 CCTGACCTGCAACAATTCCG 59.477 55.000 0.00 0.00 0.00 4.30
2239 5055 0.890683 CCCTGACCTGCAACAATTCC 59.109 55.000 0.00 0.00 0.00 3.01
2240 5056 0.890683 CCCCTGACCTGCAACAATTC 59.109 55.000 0.00 0.00 0.00 2.17
2241 5057 0.542702 CCCCCTGACCTGCAACAATT 60.543 55.000 0.00 0.00 0.00 2.32
2242 5058 1.077265 CCCCCTGACCTGCAACAAT 59.923 57.895 0.00 0.00 0.00 2.71
2243 5059 2.067932 CTCCCCCTGACCTGCAACAA 62.068 60.000 0.00 0.00 0.00 2.83
2244 5060 2.449518 TCCCCCTGACCTGCAACA 60.450 61.111 0.00 0.00 0.00 3.33
2245 5061 2.352805 CTCCCCCTGACCTGCAAC 59.647 66.667 0.00 0.00 0.00 4.17
2246 5062 2.935481 CCTCCCCCTGACCTGCAA 60.935 66.667 0.00 0.00 0.00 4.08
2263 5079 1.529309 GACAATCCTCTGAGCCCCC 59.471 63.158 0.00 0.00 0.00 5.40
2264 5080 1.144936 CGACAATCCTCTGAGCCCC 59.855 63.158 0.00 0.00 0.00 5.80
2265 5081 1.522580 GCGACAATCCTCTGAGCCC 60.523 63.158 0.00 0.00 0.00 5.19
2266 5082 1.880340 CGCGACAATCCTCTGAGCC 60.880 63.158 0.00 0.00 0.00 4.70
2267 5083 1.880340 CCGCGACAATCCTCTGAGC 60.880 63.158 8.23 0.00 0.00 4.26
2268 5084 0.803768 CACCGCGACAATCCTCTGAG 60.804 60.000 8.23 0.00 0.00 3.35
2269 5085 1.215382 CACCGCGACAATCCTCTGA 59.785 57.895 8.23 0.00 0.00 3.27
2270 5086 1.811266 CCACCGCGACAATCCTCTG 60.811 63.158 8.23 0.00 0.00 3.35
2271 5087 2.579201 CCACCGCGACAATCCTCT 59.421 61.111 8.23 0.00 0.00 3.69
2272 5088 3.195698 GCCACCGCGACAATCCTC 61.196 66.667 8.23 0.00 0.00 3.71
2291 5107 3.737172 ATGACCGCCGTTGCTTGC 61.737 61.111 0.00 0.00 34.43 4.01
2292 5108 2.176546 CATGACCGCCGTTGCTTG 59.823 61.111 0.00 0.00 34.43 4.01
2293 5109 3.055719 CCATGACCGCCGTTGCTT 61.056 61.111 0.00 0.00 34.43 3.91
2296 5112 2.819595 CTCCCATGACCGCCGTTG 60.820 66.667 0.00 0.00 0.00 4.10
2297 5113 4.096003 CCTCCCATGACCGCCGTT 62.096 66.667 0.00 0.00 0.00 4.44
2299 5115 4.096003 AACCTCCCATGACCGCCG 62.096 66.667 0.00 0.00 0.00 6.46
2300 5116 2.438434 CAACCTCCCATGACCGCC 60.438 66.667 0.00 0.00 0.00 6.13
2301 5117 1.450312 CTCAACCTCCCATGACCGC 60.450 63.158 0.00 0.00 0.00 5.68
2302 5118 1.221840 CCTCAACCTCCCATGACCG 59.778 63.158 0.00 0.00 0.00 4.79
2303 5119 1.077429 GCCTCAACCTCCCATGACC 60.077 63.158 0.00 0.00 0.00 4.02
2304 5120 1.450312 CGCCTCAACCTCCCATGAC 60.450 63.158 0.00 0.00 0.00 3.06
2305 5121 1.918293 ACGCCTCAACCTCCCATGA 60.918 57.895 0.00 0.00 0.00 3.07
2306 5122 1.746615 CACGCCTCAACCTCCCATG 60.747 63.158 0.00 0.00 0.00 3.66
2307 5123 2.671070 CACGCCTCAACCTCCCAT 59.329 61.111 0.00 0.00 0.00 4.00
2308 5124 3.636231 CCACGCCTCAACCTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
2309 5125 4.410400 CCCACGCCTCAACCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
2310 5126 3.637273 ACCCACGCCTCAACCTCC 61.637 66.667 0.00 0.00 0.00 4.30
2311 5127 2.358737 CACCCACGCCTCAACCTC 60.359 66.667 0.00 0.00 0.00 3.85
2312 5128 3.953775 CCACCCACGCCTCAACCT 61.954 66.667 0.00 0.00 0.00 3.50
2325 5141 3.929334 TATTGTGCACCGCCCCACC 62.929 63.158 15.69 0.00 0.00 4.61
2326 5142 2.360600 TATTGTGCACCGCCCCAC 60.361 61.111 15.69 0.00 0.00 4.61
2327 5143 2.045438 CTATTGTGCACCGCCCCA 60.045 61.111 15.69 0.00 0.00 4.96
2328 5144 3.518068 GCTATTGTGCACCGCCCC 61.518 66.667 15.69 0.00 0.00 5.80
2329 5145 3.876198 CGCTATTGTGCACCGCCC 61.876 66.667 15.69 0.00 0.00 6.13
2337 5153 3.272334 GGGGCGAGCGCTATTGTG 61.272 66.667 11.50 0.00 41.60 3.33
2338 5154 4.547367 GGGGGCGAGCGCTATTGT 62.547 66.667 11.50 0.00 41.60 2.71
2369 5185 4.796495 CTACCCCAACCGCCTGCC 62.796 72.222 0.00 0.00 0.00 4.85
2370 5186 4.796495 CCTACCCCAACCGCCTGC 62.796 72.222 0.00 0.00 0.00 4.85
2371 5187 4.109675 CCCTACCCCAACCGCCTG 62.110 72.222 0.00 0.00 0.00 4.85
2372 5188 4.669773 ACCCTACCCCAACCGCCT 62.670 66.667 0.00 0.00 0.00 5.52
2373 5189 4.419921 CACCCTACCCCAACCGCC 62.420 72.222 0.00 0.00 0.00 6.13
2374 5190 4.419921 CCACCCTACCCCAACCGC 62.420 72.222 0.00 0.00 0.00 5.68
2375 5191 3.723922 CCCACCCTACCCCAACCG 61.724 72.222 0.00 0.00 0.00 4.44
2376 5192 2.533492 ACCCACCCTACCCCAACC 60.533 66.667 0.00 0.00 0.00 3.77
2377 5193 2.761160 CACCCACCCTACCCCAAC 59.239 66.667 0.00 0.00 0.00 3.77
2378 5194 2.533232 CCACCCACCCTACCCCAA 60.533 66.667 0.00 0.00 0.00 4.12
2379 5195 4.686437 CCCACCCACCCTACCCCA 62.686 72.222 0.00 0.00 0.00 4.96
2382 5198 3.261677 TTGCCCACCCACCCTACC 61.262 66.667 0.00 0.00 0.00 3.18
2383 5199 1.202769 TAGTTGCCCACCCACCCTAC 61.203 60.000 0.00 0.00 0.00 3.18
2384 5200 1.161355 TAGTTGCCCACCCACCCTA 59.839 57.895 0.00 0.00 0.00 3.53
2385 5201 2.121689 TAGTTGCCCACCCACCCT 60.122 61.111 0.00 0.00 0.00 4.34
2386 5202 2.035155 GTAGTTGCCCACCCACCC 59.965 66.667 0.00 0.00 0.00 4.61
2387 5203 2.359478 CGTAGTTGCCCACCCACC 60.359 66.667 0.00 0.00 0.00 4.61
2388 5204 1.964373 CACGTAGTTGCCCACCCAC 60.964 63.158 0.00 0.00 41.61 4.61
2389 5205 2.107041 CTCACGTAGTTGCCCACCCA 62.107 60.000 0.00 0.00 41.61 4.51
2390 5206 1.375523 CTCACGTAGTTGCCCACCC 60.376 63.158 0.00 0.00 41.61 4.61
2391 5207 1.375523 CCTCACGTAGTTGCCCACC 60.376 63.158 0.00 0.00 41.61 4.61
2392 5208 0.389948 CTCCTCACGTAGTTGCCCAC 60.390 60.000 0.00 0.00 41.61 4.61
2393 5209 0.541063 TCTCCTCACGTAGTTGCCCA 60.541 55.000 0.00 0.00 41.61 5.36
2394 5210 0.606604 TTCTCCTCACGTAGTTGCCC 59.393 55.000 0.00 0.00 41.61 5.36
2395 5211 1.544691 TCTTCTCCTCACGTAGTTGCC 59.455 52.381 0.00 0.00 41.61 4.52
2396 5212 3.299340 TTCTTCTCCTCACGTAGTTGC 57.701 47.619 0.00 0.00 41.61 4.17
2397 5213 4.177026 CCATTCTTCTCCTCACGTAGTTG 58.823 47.826 0.00 0.00 41.61 3.16
2398 5214 3.195825 CCCATTCTTCTCCTCACGTAGTT 59.804 47.826 0.00 0.00 41.61 2.24
2400 5216 3.024547 TCCCATTCTTCTCCTCACGTAG 58.975 50.000 0.00 0.00 0.00 3.51
2401 5217 3.024547 CTCCCATTCTTCTCCTCACGTA 58.975 50.000 0.00 0.00 0.00 3.57
2402 5218 1.827969 CTCCCATTCTTCTCCTCACGT 59.172 52.381 0.00 0.00 0.00 4.49
2403 5219 1.137872 CCTCCCATTCTTCTCCTCACG 59.862 57.143 0.00 0.00 0.00 4.35
2404 5220 2.192263 ACCTCCCATTCTTCTCCTCAC 58.808 52.381 0.00 0.00 0.00 3.51
2405 5221 2.573462 CAACCTCCCATTCTTCTCCTCA 59.427 50.000 0.00 0.00 0.00 3.86
2406 5222 2.840651 TCAACCTCCCATTCTTCTCCTC 59.159 50.000 0.00 0.00 0.00 3.71
2407 5223 2.921221 TCAACCTCCCATTCTTCTCCT 58.079 47.619 0.00 0.00 0.00 3.69
2408 5224 3.721087 TTCAACCTCCCATTCTTCTCC 57.279 47.619 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.