Multiple sequence alignment - TraesCS2A01G153600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G153600 chr2A 100.000 3724 0 0 1 3724 101534323 101538046 0.000000e+00 6878.0
1 TraesCS2A01G153600 chr2A 89.362 94 3 5 3633 3724 385443786 385443698 1.090000e-20 111.0
2 TraesCS2A01G153600 chr2A 94.643 56 3 0 1887 1942 555339563 555339618 1.840000e-13 87.9
3 TraesCS2A01G153600 chr2D 93.270 1783 72 9 1969 3724 102542776 102544537 0.000000e+00 2584.0
4 TraesCS2A01G153600 chr2D 95.338 1244 57 1 728 1970 102541231 102542474 0.000000e+00 1975.0
5 TraesCS2A01G153600 chr2D 86.359 887 51 29 1 862 102540397 102541238 0.000000e+00 904.0
6 TraesCS2A01G153600 chr2D 83.036 112 12 3 1845 1956 558334696 558334800 1.100000e-15 95.3
7 TraesCS2A01G153600 chr2B 92.459 1724 85 7 1850 3547 153760993 153762697 0.000000e+00 2422.0
8 TraesCS2A01G153600 chr2B 95.386 1127 49 1 728 1854 153759788 153760911 0.000000e+00 1790.0
9 TraesCS2A01G153600 chr2B 92.386 880 45 12 1 862 153758920 153759795 0.000000e+00 1234.0
10 TraesCS2A01G153600 chr2B 97.196 107 1 1 3615 3721 153762700 153762804 2.960000e-41 180.0
11 TraesCS2A01G153600 chr2B 88.043 92 7 3 3633 3724 531163624 531163711 5.090000e-19 106.0
12 TraesCS2A01G153600 chr4D 84.375 192 24 4 1853 2040 482705731 482705542 2.280000e-42 183.0
13 TraesCS2A01G153600 chr4B 83.838 198 25 5 1847 2040 612276444 612276250 8.220000e-42 182.0
14 TraesCS2A01G153600 chr4B 85.577 104 14 1 1845 1948 75204555 75204453 1.410000e-19 108.0
15 TraesCS2A01G153600 chr4B 94.340 53 3 0 1846 1898 456348168 456348220 8.570000e-12 82.4
16 TraesCS2A01G153600 chr4A 86.897 145 16 1 1846 1990 92744651 92744510 3.850000e-35 159.0
17 TraesCS2A01G153600 chr4A 88.043 92 7 3 3633 3724 629510945 629510858 5.090000e-19 106.0
18 TraesCS2A01G153600 chr4A 88.043 92 7 3 3633 3724 629516077 629515990 5.090000e-19 106.0
19 TraesCS2A01G153600 chr3D 87.629 97 9 1 1839 1935 118539669 118539762 3.930000e-20 110.0
20 TraesCS2A01G153600 chr7D 87.912 91 7 3 3633 3723 475721343 475721257 1.830000e-18 104.0
21 TraesCS2A01G153600 chr6A 88.043 92 5 4 3633 3723 350040443 350040357 1.830000e-18 104.0
22 TraesCS2A01G153600 chr1D 87.912 91 7 3 3633 3723 362328035 362328121 1.830000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G153600 chr2A 101534323 101538046 3723 False 6878.0 6878 100.000000 1 3724 1 chr2A.!!$F1 3723
1 TraesCS2A01G153600 chr2D 102540397 102544537 4140 False 1821.0 2584 91.655667 1 3724 3 chr2D.!!$F2 3723
2 TraesCS2A01G153600 chr2B 153758920 153762804 3884 False 1406.5 2422 94.356750 1 3721 4 chr2B.!!$F2 3720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 771 0.179018 GGTTGCCTTCCTGTGACTGT 60.179 55.0 0.00 0.0 0.00 3.55 F
1894 2143 0.179045 GCAGTGGTGGTGAGTTCACT 60.179 55.0 11.67 0.0 45.73 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2213 2766 0.032515 TAAGGGAGGGTGATCTGCGA 60.033 55.0 0.0 0.0 0.0 5.10 R
2935 3488 0.389948 CCTTGACGTAGCTGGTGACC 60.390 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.179200 CGATGTTTCCGGCCGAAAAG 60.179 55.000 30.73 10.28 42.11 2.27
44 45 2.165845 TGTTTCCGGCCGAAAAGAAAAA 59.834 40.909 30.73 19.37 42.11 1.94
145 159 9.117183 ACAATTATTAGTTTCCGTTCCTTATCC 57.883 33.333 0.00 0.00 0.00 2.59
167 181 7.014988 TCCCAAAAGGATTCCCTAAAATTTG 57.985 36.000 0.00 2.69 43.48 2.32
170 184 7.256655 CCCAAAAGGATTCCCTAAAATTTGTCT 60.257 37.037 0.00 0.00 43.48 3.41
222 239 1.004918 AGAAGGAAACGGCGACAGG 60.005 57.895 16.62 0.00 0.00 4.00
223 240 1.005394 GAAGGAAACGGCGACAGGA 60.005 57.895 16.62 0.00 0.00 3.86
289 318 1.680651 CCACCTCTCTCTCGCCAGT 60.681 63.158 0.00 0.00 0.00 4.00
607 641 1.865970 CCGCAGATGAGATCAAAGAGC 59.134 52.381 0.00 0.00 0.00 4.09
608 642 2.483363 CCGCAGATGAGATCAAAGAGCT 60.483 50.000 0.00 0.00 0.00 4.09
610 644 3.132925 GCAGATGAGATCAAAGAGCTCC 58.867 50.000 10.93 0.00 43.48 4.70
641 675 5.164022 CGTCGTTTGATTTGAGTAGGTAACC 60.164 44.000 0.00 0.00 37.17 2.85
687 722 2.332117 ACGACTTTCCCCCTTCTTACA 58.668 47.619 0.00 0.00 0.00 2.41
692 727 0.254747 TTCCCCCTTCTTACATGCGG 59.745 55.000 0.00 0.00 0.00 5.69
735 771 0.179018 GGTTGCCTTCCTGTGACTGT 60.179 55.000 0.00 0.00 0.00 3.55
741 777 1.002888 CCTTCCTGTGACTGTGAGCAT 59.997 52.381 0.00 0.00 0.00 3.79
790 826 6.833041 TGTTACCAATTTCTCCAGTTCTGTA 58.167 36.000 0.00 0.00 0.00 2.74
852 888 3.429492 TGCAATCAGCCCACTCATTTTA 58.571 40.909 0.00 0.00 44.83 1.52
898 1062 2.941333 CAGCTCACACAGGTTGCG 59.059 61.111 0.00 0.00 0.00 4.85
902 1066 2.896801 CTCACACAGGTTGCGTGCC 61.897 63.158 0.00 0.00 37.93 5.01
1064 1228 1.952133 CGTTTGTTGTCTCGCGGGA 60.952 57.895 3.45 3.45 0.00 5.14
1243 1407 2.156917 CCTCTTGATGTGCTTGCTTCA 58.843 47.619 0.00 0.00 0.00 3.02
1250 1414 4.388485 TGATGTGCTTGCTTCAGTCTTTA 58.612 39.130 0.00 0.00 0.00 1.85
1392 1556 3.756117 GAGGGAAGAAGAAAAAGAGCCA 58.244 45.455 0.00 0.00 0.00 4.75
1456 1620 1.617947 ATGGGGAGCTCGAGGTGTTC 61.618 60.000 23.97 7.61 0.00 3.18
1492 1656 6.366630 GTTTGTTACTGATCAGCTTCTCAAC 58.633 40.000 22.83 15.54 0.00 3.18
1498 1662 9.405587 GTTACTGATCAGCTTCTCAACTATATC 57.594 37.037 22.83 0.00 0.00 1.63
1524 1688 7.148787 CGCAGAAAGGTACTCTTGTTTTAGTAG 60.149 40.741 0.00 0.00 38.49 2.57
1621 1785 6.127101 GTGGCCTCTTAATTTATTGGGTACT 58.873 40.000 3.32 0.00 0.00 2.73
1626 1790 7.054124 CCTCTTAATTTATTGGGTACTGCTCA 58.946 38.462 0.00 0.00 0.00 4.26
1791 1955 3.633525 TCACATTATTTGCTCTCCATGCC 59.366 43.478 0.00 0.00 0.00 4.40
1894 2143 0.179045 GCAGTGGTGGTGAGTTCACT 60.179 55.000 11.67 0.00 45.73 3.41
1896 2145 0.759346 AGTGGTGGTGAGTTCACTCC 59.241 55.000 11.67 13.60 45.73 3.85
1936 2185 3.116199 TCCCTCATCCATCTAGAACCCAT 60.116 47.826 0.00 0.00 0.00 4.00
1975 2527 5.222442 TGGAAGGGGAAAAACCATATCTTGA 60.222 40.000 0.00 0.00 41.20 3.02
2039 2592 2.101415 GGCTGCTTGGTTGAGTTTCTTT 59.899 45.455 0.00 0.00 0.00 2.52
2048 2601 3.434637 GTTGAGTTTCTTTTTCGCAGCA 58.565 40.909 0.00 0.00 0.00 4.41
2051 2604 4.290155 TGAGTTTCTTTTTCGCAGCATTC 58.710 39.130 0.00 0.00 0.00 2.67
2188 2741 4.024893 CGTTATGCCCTAATGCTACAACAG 60.025 45.833 0.00 0.00 0.00 3.16
2252 2805 1.190643 AGAGCCTCAGCCTTGACTAC 58.809 55.000 0.00 0.00 41.25 2.73
2262 2815 2.304180 AGCCTTGACTACTGCAATGTCT 59.696 45.455 12.51 0.00 0.00 3.41
2345 2898 3.068590 CCCTATGTCCATTTGTTGATGGC 59.931 47.826 0.00 0.00 45.07 4.40
2422 2975 0.466963 CAAGGGTCGTATGGGGGTAC 59.533 60.000 0.00 0.00 0.00 3.34
2481 3034 1.596260 TGCGATACCTTACTCTCGTCG 59.404 52.381 0.00 0.00 33.80 5.12
2482 3035 1.070041 GCGATACCTTACTCTCGTCGG 60.070 57.143 0.00 0.00 33.80 4.79
2484 3037 2.611292 CGATACCTTACTCTCGTCGGTT 59.389 50.000 0.00 0.00 31.78 4.44
2486 3039 0.243095 ACCTTACTCTCGTCGGTTGC 59.757 55.000 0.00 0.00 0.00 4.17
2571 3124 1.569003 CGCGACTGTTGCAACATCA 59.431 52.632 31.17 10.36 38.41 3.07
2624 3177 3.451141 AGGATCAAGACGCTGATTCTC 57.549 47.619 0.00 0.00 37.08 2.87
2652 3205 3.580904 CAGCATTTGCAGCAGTTGT 57.419 47.368 5.20 0.00 45.16 3.32
2653 3206 2.710220 CAGCATTTGCAGCAGTTGTA 57.290 45.000 5.20 0.00 45.16 2.41
2664 3217 2.029290 CAGCAGTTGTACTCCCGTTACT 60.029 50.000 0.00 0.00 0.00 2.24
2665 3218 2.029290 AGCAGTTGTACTCCCGTTACTG 60.029 50.000 0.00 0.00 0.00 2.74
2693 3246 2.874701 CCCTGATGATAGCCTTTTCACG 59.125 50.000 0.00 0.00 0.00 4.35
2817 3370 3.152341 GGATATGGCATGAAGGGTTCAG 58.848 50.000 10.98 0.00 43.98 3.02
2822 3375 0.967380 GCATGAAGGGTTCAGGTGGG 60.967 60.000 0.00 0.00 43.98 4.61
2841 3394 6.388689 AGGTGGGTATTCACATTGGTAATCTA 59.611 38.462 0.00 0.00 39.27 1.98
2895 3448 1.663695 ACTCTGGTTTGTGGTGTTCG 58.336 50.000 0.00 0.00 0.00 3.95
2914 3467 0.799393 GAAGAAGTTCCCAAGCTCGC 59.201 55.000 0.00 0.00 0.00 5.03
2929 3482 1.280982 CTCGCGCATACAGTGTTGAT 58.719 50.000 8.75 0.00 0.00 2.57
2935 3488 2.352651 CGCATACAGTGTTGATCCCTTG 59.647 50.000 0.00 0.00 0.00 3.61
2942 3495 1.144691 TGTTGATCCCTTGGTCACCA 58.855 50.000 0.00 0.00 0.00 4.17
2983 3536 1.577922 CATCCAGCACAGCACACAC 59.422 57.895 0.00 0.00 0.00 3.82
2984 3537 1.148949 ATCCAGCACAGCACACACA 59.851 52.632 0.00 0.00 0.00 3.72
2985 3538 0.251033 ATCCAGCACAGCACACACAT 60.251 50.000 0.00 0.00 0.00 3.21
2986 3539 0.886043 TCCAGCACAGCACACACATC 60.886 55.000 0.00 0.00 0.00 3.06
2987 3540 1.167781 CCAGCACAGCACACACATCA 61.168 55.000 0.00 0.00 0.00 3.07
2988 3541 0.040692 CAGCACAGCACACACATCAC 60.041 55.000 0.00 0.00 0.00 3.06
2989 3542 1.168407 AGCACAGCACACACATCACC 61.168 55.000 0.00 0.00 0.00 4.02
2990 3543 1.446516 GCACAGCACACACATCACCA 61.447 55.000 0.00 0.00 0.00 4.17
2991 3544 1.241165 CACAGCACACACATCACCAT 58.759 50.000 0.00 0.00 0.00 3.55
2992 3545 1.198408 CACAGCACACACATCACCATC 59.802 52.381 0.00 0.00 0.00 3.51
2993 3546 1.202794 ACAGCACACACATCACCATCA 60.203 47.619 0.00 0.00 0.00 3.07
2994 3547 1.198408 CAGCACACACATCACCATCAC 59.802 52.381 0.00 0.00 0.00 3.06
2995 3548 0.523072 GCACACACATCACCATCACC 59.477 55.000 0.00 0.00 0.00 4.02
2996 3549 1.894881 CACACACATCACCATCACCA 58.105 50.000 0.00 0.00 0.00 4.17
2997 3550 2.439409 CACACACATCACCATCACCAT 58.561 47.619 0.00 0.00 0.00 3.55
2998 3551 2.421073 CACACACATCACCATCACCATC 59.579 50.000 0.00 0.00 0.00 3.51
2999 3552 2.040145 ACACACATCACCATCACCATCA 59.960 45.455 0.00 0.00 0.00 3.07
3000 3553 2.421073 CACACATCACCATCACCATCAC 59.579 50.000 0.00 0.00 0.00 3.06
3006 3559 2.308275 TCACCATCACCATCACCATCAA 59.692 45.455 0.00 0.00 0.00 2.57
3158 3723 5.621193 GCTTTAAGATTACTAGGGGCATGA 58.379 41.667 0.00 0.00 0.00 3.07
3205 3770 8.578448 TGATTGTTTGTGATCATTTGGAGATA 57.422 30.769 0.00 0.00 0.00 1.98
3216 3781 8.953313 TGATCATTTGGAGATATGATTGTATGC 58.047 33.333 0.00 0.00 40.58 3.14
3240 3805 4.378666 CGGTAAAAACTAACGGGTTGGATG 60.379 45.833 1.75 0.00 0.00 3.51
3248 3813 2.649531 ACGGGTTGGATGTTGAAGAA 57.350 45.000 0.00 0.00 0.00 2.52
3363 3953 3.243035 CCATCTGTTGTTTCACAAAGCGA 60.243 43.478 0.00 0.00 40.15 4.93
3492 4082 5.362717 TCTTGTCCTACATGATCAATACCGT 59.637 40.000 0.00 0.00 28.84 4.83
3539 4130 4.899502 ACCTGTTGTGACCTAGAAATGAG 58.100 43.478 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.005367 TGCCTTCTTTCATCGGGTTTTTC 59.995 43.478 0.00 0.00 0.00 2.29
44 45 0.400213 TGTGCCTTCTTTCATCGGGT 59.600 50.000 0.00 0.00 0.00 5.28
145 159 7.679783 AGACAAATTTTAGGGAATCCTTTTGG 58.320 34.615 0.00 0.00 41.56 3.28
203 220 1.014564 CCTGTCGCCGTTTCCTTCTC 61.015 60.000 0.00 0.00 0.00 2.87
222 239 5.882000 ACAGTTAAATACCCCCGTTTGTATC 59.118 40.000 0.00 0.00 0.00 2.24
223 240 5.818887 ACAGTTAAATACCCCCGTTTGTAT 58.181 37.500 0.00 0.00 0.00 2.29
381 410 4.083862 GTGACCTCGGCAGGGGAC 62.084 72.222 10.77 3.43 45.53 4.46
469 503 0.968405 TTGTGCCTTGGAATGCCTTC 59.032 50.000 0.00 0.00 34.31 3.46
484 518 2.671177 CCAGCGAGCGAACCTTGTG 61.671 63.158 0.00 0.00 0.00 3.33
607 641 2.032071 AAACGACGGCAAGGGGAG 59.968 61.111 0.00 0.00 0.00 4.30
608 642 2.119484 ATCAAACGACGGCAAGGGGA 62.119 55.000 0.00 0.00 0.00 4.81
610 644 0.596082 AAATCAAACGACGGCAAGGG 59.404 50.000 0.00 0.00 0.00 3.95
641 675 2.178912 TTTGCGGGTAAGAAGGTGAG 57.821 50.000 0.00 0.00 0.00 3.51
687 722 7.504924 TTATCGATTTTTATCCTTTCCGCAT 57.495 32.000 1.71 0.00 0.00 4.73
741 777 6.978343 AATACGGAGAATTCATCAAAACGA 57.022 33.333 8.44 0.00 0.00 3.85
790 826 5.936956 CAGATCTTTACAAGAAACTGGAGCT 59.063 40.000 0.00 0.00 41.63 4.09
852 888 8.725148 CAGCAAGAATTTCTTATCAGTTACACT 58.275 33.333 11.21 0.00 33.78 3.55
892 1056 1.864565 AAAAGAAATGGCACGCAACC 58.135 45.000 0.00 0.00 0.00 3.77
898 1062 3.378911 TTCGGGAAAAAGAAATGGCAC 57.621 42.857 0.00 0.00 0.00 5.01
902 1066 4.944048 ACCTGTTTCGGGAAAAAGAAATG 58.056 39.130 11.96 0.00 37.75 2.32
1243 1407 1.792006 CGCCGAGTTTGGTAAAGACT 58.208 50.000 0.00 0.00 0.00 3.24
1250 1414 2.203153 AACTGCGCCGAGTTTGGT 60.203 55.556 4.18 0.00 31.92 3.67
1392 1556 1.536766 CCATTGCACACAAGACATCGT 59.463 47.619 0.00 0.00 39.69 3.73
1467 1631 4.997395 TGAGAAGCTGATCAGTAACAAACC 59.003 41.667 23.38 4.70 0.00 3.27
1492 1656 6.740110 ACAAGAGTACCTTTCTGCGATATAG 58.260 40.000 0.00 0.00 31.42 1.31
1498 1662 4.813296 AAAACAAGAGTACCTTTCTGCG 57.187 40.909 0.00 0.00 31.42 5.18
1533 1697 5.163248 TGTGGTCTGATTTGGAACTTAGACA 60.163 40.000 0.00 0.00 37.01 3.41
1540 1704 4.097892 AGTTTGTGTGGTCTGATTTGGAAC 59.902 41.667 0.00 0.00 0.00 3.62
1594 1758 4.285863 CCAATAAATTAAGAGGCCACCCA 58.714 43.478 5.01 0.00 0.00 4.51
1621 1785 2.333926 CCGTTAACGAATCAGTGAGCA 58.666 47.619 28.79 0.00 43.02 4.26
1626 1790 2.825861 ACACCCGTTAACGAATCAGT 57.174 45.000 28.79 15.70 43.02 3.41
1727 1891 8.083462 TCAAGTACTCATGTATGTGTTTTGAC 57.917 34.615 0.00 6.29 34.96 3.18
1821 1985 4.888239 TGATCTACCTACAGGCTACAACTC 59.112 45.833 0.00 0.00 39.32 3.01
1894 2143 0.993509 GATTGGGATGGAGTGGGGGA 60.994 60.000 0.00 0.00 0.00 4.81
1896 2145 0.475906 GAGATTGGGATGGAGTGGGG 59.524 60.000 0.00 0.00 0.00 4.96
1936 2185 2.573462 CCTTCCAATTGGAGAGGTCTGA 59.427 50.000 29.38 15.45 46.36 3.27
1992 2545 1.818060 TGCACTTGTGAAAACTGCAGT 59.182 42.857 15.25 15.25 32.97 4.40
2039 2592 2.331893 CCCGTGGAATGCTGCGAAA 61.332 57.895 0.00 0.00 0.00 3.46
2048 2601 0.541764 ACAACCAATGCCCGTGGAAT 60.542 50.000 4.54 0.00 39.62 3.01
2051 2604 1.134175 GATAACAACCAATGCCCGTGG 59.866 52.381 0.00 0.00 42.28 4.94
2107 2660 1.202371 CCCGAGCGTTGCTACAGAATA 60.202 52.381 0.00 0.00 39.88 1.75
2155 2708 3.914426 AGGGCATAACGAGATTCAACT 57.086 42.857 0.00 0.00 0.00 3.16
2161 2714 4.283467 TGTAGCATTAGGGCATAACGAGAT 59.717 41.667 0.00 0.00 35.83 2.75
2213 2766 0.032515 TAAGGGAGGGTGATCTGCGA 60.033 55.000 0.00 0.00 0.00 5.10
2252 2805 1.135859 GCTTCGTTGGAGACATTGCAG 60.136 52.381 0.00 0.00 42.32 4.41
2262 2815 2.416747 CTCAGTGAATGCTTCGTTGGA 58.583 47.619 0.00 0.00 0.00 3.53
2345 2898 0.102300 TGGTGACCTCATATGCGTCG 59.898 55.000 2.11 0.00 0.00 5.12
2422 2975 0.329261 TCCAAGTGCCCCATCTCTTG 59.671 55.000 0.00 0.00 37.33 3.02
2481 3034 2.609459 CCTCTGTCGTGATATTGCAACC 59.391 50.000 0.00 0.00 0.00 3.77
2482 3035 3.521560 TCCTCTGTCGTGATATTGCAAC 58.478 45.455 0.00 0.00 0.00 4.17
2484 3037 2.481969 GCTCCTCTGTCGTGATATTGCA 60.482 50.000 0.00 0.00 0.00 4.08
2486 3039 3.379240 CAGCTCCTCTGTCGTGATATTG 58.621 50.000 0.00 0.00 38.02 1.90
2556 3109 3.004629 TCCACAATGATGTTGCAACAGTC 59.995 43.478 33.44 27.73 43.04 3.51
2571 3124 0.680921 CGCAGGGTTCCATCCACAAT 60.681 55.000 0.00 0.00 0.00 2.71
2640 3193 0.602638 CGGGAGTACAACTGCTGCAA 60.603 55.000 3.02 0.00 36.16 4.08
2646 3199 3.655276 ACAGTAACGGGAGTACAACTG 57.345 47.619 0.00 0.00 46.69 3.16
2648 3201 4.810491 TGAAAACAGTAACGGGAGTACAAC 59.190 41.667 0.00 0.00 46.69 3.32
2649 3202 4.810491 GTGAAAACAGTAACGGGAGTACAA 59.190 41.667 0.00 0.00 46.69 2.41
2652 3205 3.244181 GGGTGAAAACAGTAACGGGAGTA 60.244 47.826 0.00 0.00 46.69 2.59
2664 3217 3.266772 AGGCTATCATCAGGGTGAAAACA 59.733 43.478 0.00 0.00 0.00 2.83
2665 3218 3.891049 AGGCTATCATCAGGGTGAAAAC 58.109 45.455 0.00 0.00 0.00 2.43
2693 3246 3.399330 TCTCCAATCGTCAAACTTGTCC 58.601 45.455 0.00 0.00 0.00 4.02
2817 3370 5.445964 AGATTACCAATGTGAATACCCACC 58.554 41.667 0.00 0.00 36.26 4.61
2841 3394 7.309012 GCATTTGGTCTGCAGTATCAATATCAT 60.309 37.037 14.67 4.95 39.46 2.45
2895 3448 0.799393 GCGAGCTTGGGAACTTCTTC 59.201 55.000 2.37 0.00 0.00 2.87
2914 3467 2.315925 AGGGATCAACACTGTATGCG 57.684 50.000 0.00 0.00 0.00 4.73
2929 3482 1.541310 CGTAGCTGGTGACCAAGGGA 61.541 60.000 5.53 0.00 30.80 4.20
2935 3488 0.389948 CCTTGACGTAGCTGGTGACC 60.390 60.000 0.00 0.00 0.00 4.02
2942 3495 0.393077 AGCACAACCTTGACGTAGCT 59.607 50.000 0.00 0.00 0.00 3.32
2983 3536 2.423446 TGGTGATGGTGATGGTGATG 57.577 50.000 0.00 0.00 0.00 3.07
2984 3537 2.510800 TGATGGTGATGGTGATGGTGAT 59.489 45.455 0.00 0.00 0.00 3.06
2985 3538 1.914798 TGATGGTGATGGTGATGGTGA 59.085 47.619 0.00 0.00 0.00 4.02
2986 3539 2.423446 TGATGGTGATGGTGATGGTG 57.577 50.000 0.00 0.00 0.00 4.17
2987 3540 2.041485 TGTTGATGGTGATGGTGATGGT 59.959 45.455 0.00 0.00 0.00 3.55
2988 3541 2.725637 TGTTGATGGTGATGGTGATGG 58.274 47.619 0.00 0.00 0.00 3.51
2989 3542 4.678622 CATTGTTGATGGTGATGGTGATG 58.321 43.478 0.00 0.00 31.83 3.07
2990 3543 3.131577 GCATTGTTGATGGTGATGGTGAT 59.868 43.478 0.00 0.00 36.21 3.06
2991 3544 2.492881 GCATTGTTGATGGTGATGGTGA 59.507 45.455 0.00 0.00 36.21 4.02
2992 3545 2.417651 GGCATTGTTGATGGTGATGGTG 60.418 50.000 0.00 0.00 36.21 4.17
2993 3546 1.826720 GGCATTGTTGATGGTGATGGT 59.173 47.619 0.00 0.00 36.21 3.55
2994 3547 1.826096 TGGCATTGTTGATGGTGATGG 59.174 47.619 0.00 0.00 36.21 3.51
2995 3548 3.453424 CATGGCATTGTTGATGGTGATG 58.547 45.455 0.00 0.00 36.21 3.07
2996 3549 2.432874 CCATGGCATTGTTGATGGTGAT 59.567 45.455 0.00 0.00 36.21 3.06
2997 3550 1.826096 CCATGGCATTGTTGATGGTGA 59.174 47.619 0.00 0.00 36.21 4.02
2998 3551 1.741055 GCCATGGCATTGTTGATGGTG 60.741 52.381 32.08 0.00 38.12 4.17
2999 3552 0.538118 GCCATGGCATTGTTGATGGT 59.462 50.000 32.08 0.00 38.12 3.55
3000 3553 0.528901 CGCCATGGCATTGTTGATGG 60.529 55.000 34.93 11.86 42.06 3.51
3039 3604 7.065563 GCTCAGAAGAAATGATATGTGACAACT 59.934 37.037 0.00 0.00 0.00 3.16
3044 3609 6.244552 AGGCTCAGAAGAAATGATATGTGA 57.755 37.500 0.00 0.00 0.00 3.58
3147 3712 4.428294 TCAAGAAGAATCATGCCCCTAG 57.572 45.455 0.00 0.00 0.00 3.02
3158 3723 9.624373 AATCATAGCTTACACATCAAGAAGAAT 57.376 29.630 0.00 0.00 0.00 2.40
3205 3770 7.477494 GTTAGTTTTTACCGGCATACAATCAT 58.523 34.615 0.00 0.00 0.00 2.45
3216 3781 2.226200 CCAACCCGTTAGTTTTTACCGG 59.774 50.000 0.00 0.00 38.39 5.28
3240 3805 1.978580 TCTCCTCCCCTGTTCTTCAAC 59.021 52.381 0.00 0.00 0.00 3.18
3248 3813 2.412591 CCATACAATCTCCTCCCCTGT 58.587 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.