Multiple sequence alignment - TraesCS2A01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G153300 chr2A 100.000 3904 0 0 1 3904 101376559 101380462 0.000000e+00 7210.0
1 TraesCS2A01G153300 chr2D 87.039 2361 207 38 1386 3705 102279765 102282067 0.000000e+00 2573.0
2 TraesCS2A01G153300 chr2D 78.237 896 76 49 554 1374 102278849 102279700 7.640000e-127 464.0
3 TraesCS2A01G153300 chr2D 85.632 174 24 1 2961 3134 102282383 102282555 8.620000e-42 182.0
4 TraesCS2A01G153300 chr2D 89.655 145 6 5 119 254 102275980 102276124 4.010000e-40 176.0
5 TraesCS2A01G153300 chr2D 87.097 124 15 1 3774 3896 102282068 102282191 5.260000e-29 139.0
6 TraesCS2A01G153300 chr2D 94.667 75 4 0 257 331 102277296 102277370 2.460000e-22 117.0
7 TraesCS2A01G153300 chr2D 82.828 99 1 7 329 413 102277927 102278023 1.500000e-09 75.0
8 TraesCS2A01G153300 chr2B 88.421 2064 181 32 1398 3432 153586203 153588237 0.000000e+00 2435.0
9 TraesCS2A01G153300 chr2B 80.672 714 52 31 450 1102 153585146 153585834 3.530000e-130 475.0
10 TraesCS2A01G153300 chr2B 84.699 366 29 12 1412 1758 281527510 281527867 1.340000e-89 340.0
11 TraesCS2A01G153300 chr2B 81.340 418 47 17 1676 2088 789008652 789009043 1.050000e-80 311.0
12 TraesCS2A01G153300 chr2B 86.397 272 20 3 3434 3705 153590928 153591182 8.260000e-72 281.0
13 TraesCS2A01G153300 chr2B 81.447 318 36 14 958 1268 281527211 281527512 5.040000e-59 239.0
14 TraesCS2A01G153300 chr2B 82.700 237 10 10 2 208 153584712 153584947 8.620000e-42 182.0
15 TraesCS2A01G153300 chr2B 94.118 68 4 0 3705 3772 357279327 357279394 1.920000e-18 104.0
16 TraesCS2A01G153300 chr1B 86.136 440 32 16 1412 1833 213407881 213407453 7.690000e-122 448.0
17 TraesCS2A01G153300 chr1B 79.753 405 51 14 1677 2073 427603389 427603770 8.320000e-67 265.0
18 TraesCS2A01G153300 chr1B 81.905 315 37 13 958 1268 213408177 213407879 8.380000e-62 248.0
19 TraesCS2A01G153300 chr1B 94.118 68 4 0 3705 3772 672504596 672504663 1.920000e-18 104.0
20 TraesCS2A01G153300 chr5A 82.734 417 44 15 1676 2088 601236684 601237076 2.890000e-91 346.0
21 TraesCS2A01G153300 chr5A 94.118 68 4 0 3705 3772 16573939 16574006 1.920000e-18 104.0
22 TraesCS2A01G153300 chr5A 92.000 50 2 2 2239 2287 601237163 601237211 7.000000e-08 69.4
23 TraesCS2A01G153300 chr6B 82.506 423 43 20 1676 2091 42820674 42820276 3.740000e-90 342.0
24 TraesCS2A01G153300 chr6B 94.118 68 4 0 3705 3772 596653328 596653395 1.920000e-18 104.0
25 TraesCS2A01G153300 chr6B 91.837 49 4 0 2239 2287 42820191 42820143 7.000000e-08 69.4
26 TraesCS2A01G153300 chr6A 82.381 420 41 19 1676 2088 555579211 555579604 6.250000e-88 335.0
27 TraesCS2A01G153300 chr6A 97.500 40 1 0 2239 2278 555579691 555579730 7.000000e-08 69.4
28 TraesCS2A01G153300 chr6D 81.235 421 48 18 1676 2091 336837970 336837576 1.050000e-80 311.0
29 TraesCS2A01G153300 chr6D 91.837 49 4 0 2239 2287 336837461 336837413 7.000000e-08 69.4
30 TraesCS2A01G153300 chrUn 94.118 68 4 0 3705 3772 182472431 182472498 1.920000e-18 104.0
31 TraesCS2A01G153300 chr3D 94.118 68 4 0 3705 3772 308591619 308591686 1.920000e-18 104.0
32 TraesCS2A01G153300 chr3A 91.892 74 6 0 3705 3778 247674758 247674685 1.920000e-18 104.0
33 TraesCS2A01G153300 chr1A 94.118 68 4 0 3705 3772 238105767 238105834 1.920000e-18 104.0
34 TraesCS2A01G153300 chr1A 94.118 68 4 0 3705 3772 238151149 238151216 1.920000e-18 104.0
35 TraesCS2A01G153300 chr4B 94.828 58 3 0 2788 2845 444840878 444840821 1.490000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G153300 chr2A 101376559 101380462 3903 False 7210.000000 7210 100.000000 1 3904 1 chr2A.!!$F1 3903
1 TraesCS2A01G153300 chr2D 102275980 102282555 6575 False 532.285714 2573 86.450714 119 3896 7 chr2D.!!$F1 3777
2 TraesCS2A01G153300 chr2B 153584712 153591182 6470 False 843.250000 2435 84.547500 2 3705 4 chr2B.!!$F3 3703
3 TraesCS2A01G153300 chr2B 281527211 281527867 656 False 289.500000 340 83.073000 958 1758 2 chr2B.!!$F4 800
4 TraesCS2A01G153300 chr1B 213407453 213408177 724 True 348.000000 448 84.020500 958 1833 2 chr1B.!!$R1 875
5 TraesCS2A01G153300 chr5A 601236684 601237211 527 False 207.700000 346 87.367000 1676 2287 2 chr5A.!!$F2 611
6 TraesCS2A01G153300 chr6B 42820143 42820674 531 True 205.700000 342 87.171500 1676 2287 2 chr6B.!!$R1 611
7 TraesCS2A01G153300 chr6A 555579211 555579730 519 False 202.200000 335 89.940500 1676 2278 2 chr6A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 3450 0.107508 AAGCCCATCCTCGTCATGTG 60.108 55.0 0.0 0.0 0.0 3.21 F
2359 5060 0.110486 TGAACCAGAAGAACCCAGGC 59.890 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2568 5269 0.040067 CCAAAGGCAGTTTCGTCAGC 60.040 55.0 0.0 0.0 0.0 4.26 R
3707 9136 0.252057 TGACCTTCCCCGATCACAGA 60.252 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.463944 TCCAACGAAAAGACAGGTTCTC 58.536 45.455 0.00 0.00 31.02 2.87
52 53 2.545537 ACGAAAAGACAGGTTCTCCC 57.454 50.000 0.00 0.00 31.02 4.30
54 55 2.037381 ACGAAAAGACAGGTTCTCCCTC 59.963 50.000 0.00 0.00 43.86 4.30
55 56 2.037251 CGAAAAGACAGGTTCTCCCTCA 59.963 50.000 0.00 0.00 43.86 3.86
56 57 3.669536 GAAAAGACAGGTTCTCCCTCAG 58.330 50.000 0.00 0.00 43.86 3.35
110 131 1.120530 TTCTTCTATGGCCCGAGGAC 58.879 55.000 0.00 0.00 0.00 3.85
155 176 2.357517 CACTCACTCGGTGGCCAC 60.358 66.667 28.57 28.57 33.87 5.01
274 1473 3.064408 TCAGAAGAAGCTTTATGCATGCG 59.936 43.478 14.09 0.00 45.94 4.73
279 1478 4.191544 AGAAGCTTTATGCATGCGAACTA 58.808 39.130 14.09 0.00 45.94 2.24
280 1479 3.951979 AGCTTTATGCATGCGAACTAC 57.048 42.857 14.09 1.12 45.94 2.73
301 1500 4.818642 ACTCATTCTGTCACTCTCACATG 58.181 43.478 0.00 0.00 0.00 3.21
356 2114 1.105457 CATCCCCATCACACGCAAAT 58.895 50.000 0.00 0.00 0.00 2.32
362 2120 2.886523 CCCATCACACGCAAATGGATAT 59.113 45.455 7.95 0.00 42.13 1.63
363 2121 4.071423 CCCATCACACGCAAATGGATATA 58.929 43.478 7.95 0.00 42.13 0.86
426 2208 3.733380 CGAAAGCGAGTCTGATCATCACT 60.733 47.826 7.09 7.09 40.82 3.41
428 2210 4.566545 AAGCGAGTCTGATCATCACTAG 57.433 45.455 7.31 8.49 0.00 2.57
439 2883 8.200792 GTCTGATCATCACTAGTAAGAAATGGT 58.799 37.037 0.00 0.00 0.00 3.55
556 3013 1.100510 CGGTCACGAGTGGATTCCTA 58.899 55.000 3.95 0.00 44.60 2.94
570 3043 8.834004 AGTGGATTCCTACACTACATAGTTTA 57.166 34.615 3.95 0.00 45.45 2.01
578 3051 6.255020 CCTACACTACATAGTTTAAACGGCAG 59.745 42.308 12.54 8.95 33.46 4.85
595 3068 2.110967 AGTGCCACATCGCTGATGC 61.111 57.895 15.41 0.00 43.15 3.91
596 3069 2.046120 TGCCACATCGCTGATGCA 60.046 55.556 15.41 0.00 43.15 3.96
677 3150 9.084533 ACCAAAGTATATGTGCTTTTAAAGGAA 57.915 29.630 11.83 0.00 38.06 3.36
695 3168 1.272490 GAAAAGTTGGCTGGGGTAAGC 59.728 52.381 0.00 0.00 42.75 3.09
702 3175 4.489771 CTGGGGTAAGCTGGCCGG 62.490 72.222 7.41 7.41 0.00 6.13
728 3201 1.299165 CTATCCGACGCCAACTCCG 60.299 63.158 0.00 0.00 0.00 4.63
795 3283 1.295423 GCGTAGGAGGGCACTTTGA 59.705 57.895 0.00 0.00 0.00 2.69
802 3290 0.884704 GAGGGCACTTTGACGAGCAA 60.885 55.000 0.00 0.00 33.88 3.91
813 3301 4.322080 TTGACGAGCAAAGAAAGAGAGA 57.678 40.909 0.00 0.00 32.46 3.10
815 3303 4.302455 TGACGAGCAAAGAAAGAGAGAAG 58.698 43.478 0.00 0.00 0.00 2.85
816 3304 3.063485 ACGAGCAAAGAAAGAGAGAAGC 58.937 45.455 0.00 0.00 0.00 3.86
817 3305 3.244044 ACGAGCAAAGAAAGAGAGAAGCT 60.244 43.478 0.00 0.00 0.00 3.74
821 3309 4.020307 AGCAAAGAAAGAGAGAAGCTAGCT 60.020 41.667 12.68 12.68 0.00 3.32
835 3323 1.198713 CTAGCTGGAGAAGGCAGGAA 58.801 55.000 0.00 0.00 0.00 3.36
837 3325 0.839853 AGCTGGAGAAGGCAGGAACT 60.840 55.000 0.00 0.00 43.88 3.01
848 3344 3.953775 AGGAACTGGCCGGTGGTG 61.954 66.667 20.54 0.00 37.18 4.17
855 3351 4.434354 GGCCGGTGGTGCCCAATA 62.434 66.667 1.90 0.00 43.33 1.90
856 3352 2.361865 GCCGGTGGTGCCCAATAA 60.362 61.111 1.90 0.00 34.18 1.40
857 3353 1.756561 GCCGGTGGTGCCCAATAAT 60.757 57.895 1.90 0.00 34.18 1.28
858 3354 1.326951 GCCGGTGGTGCCCAATAATT 61.327 55.000 1.90 0.00 34.18 1.40
904 3426 0.320771 CAACCACCTTCCAGAGACCG 60.321 60.000 0.00 0.00 0.00 4.79
928 3450 0.107508 AAGCCCATCCTCGTCATGTG 60.108 55.000 0.00 0.00 0.00 3.21
929 3451 1.221840 GCCCATCCTCGTCATGTGT 59.778 57.895 0.00 0.00 0.00 3.72
938 3460 0.303191 TCGTCATGTGTTGTGTTGCG 59.697 50.000 0.00 0.00 0.00 4.85
939 3461 0.657077 CGTCATGTGTTGTGTTGCGG 60.657 55.000 0.00 0.00 0.00 5.69
940 3462 0.934436 GTCATGTGTTGTGTTGCGGC 60.934 55.000 0.00 0.00 0.00 6.53
941 3463 1.661197 CATGTGTTGTGTTGCGGCC 60.661 57.895 0.00 0.00 0.00 6.13
942 3464 2.855514 ATGTGTTGTGTTGCGGCCC 61.856 57.895 0.00 0.00 0.00 5.80
943 3465 3.216292 GTGTTGTGTTGCGGCCCT 61.216 61.111 0.00 0.00 0.00 5.19
946 3468 2.441164 TTGTGTTGCGGCCCTTGT 60.441 55.556 0.00 0.00 0.00 3.16
947 3469 2.780094 TTGTGTTGCGGCCCTTGTG 61.780 57.895 0.00 0.00 0.00 3.33
948 3470 3.977244 GTGTTGCGGCCCTTGTGG 61.977 66.667 0.00 0.00 37.09 4.17
1012 3534 1.434696 GGCGAAATGGCATCCACTG 59.565 57.895 0.00 0.00 44.08 3.66
1022 3544 2.308344 CATCCACTGCTGATCTGCG 58.692 57.895 18.32 15.02 35.36 5.18
1023 3545 0.461516 CATCCACTGCTGATCTGCGT 60.462 55.000 18.32 15.57 35.36 5.24
1025 3547 0.457443 TCCACTGCTGATCTGCGTAG 59.543 55.000 18.32 13.65 35.36 3.51
1038 3570 3.181967 CGTAGCGTGTGCAGCTCC 61.182 66.667 1.69 0.00 44.79 4.70
1105 3637 1.549203 CCATTGCCAGGTTGCTTACT 58.451 50.000 0.00 0.00 0.00 2.24
1109 3641 4.002797 CCAGGTTGCTTACTGGCC 57.997 61.111 0.00 0.00 46.78 5.36
1111 3643 1.302511 CAGGTTGCTTACTGGCCGT 60.303 57.895 0.00 1.25 0.00 5.68
1134 3666 1.452145 GCCGGGTTCTTGTTTCTGCA 61.452 55.000 2.18 0.00 0.00 4.41
1135 3667 1.028905 CCGGGTTCTTGTTTCTGCAA 58.971 50.000 0.00 0.00 0.00 4.08
1136 3668 1.613437 CCGGGTTCTTGTTTCTGCAAT 59.387 47.619 0.00 0.00 0.00 3.56
1137 3669 2.035832 CCGGGTTCTTGTTTCTGCAATT 59.964 45.455 0.00 0.00 0.00 2.32
1138 3670 3.308530 CGGGTTCTTGTTTCTGCAATTC 58.691 45.455 0.00 0.00 0.00 2.17
1140 3672 4.301628 GGGTTCTTGTTTCTGCAATTCTG 58.698 43.478 0.00 0.00 0.00 3.02
1168 3702 3.004734 TCTTTCTTGCTAGCTTGTTTGGC 59.995 43.478 17.23 0.00 0.00 4.52
1204 3738 4.244425 TGCTAGCTCGATAATCTGGTTC 57.756 45.455 17.23 0.00 0.00 3.62
1260 3815 0.541863 ATAACCTCTGTCGGGGCAAG 59.458 55.000 0.00 0.00 0.00 4.01
1272 3827 1.301677 GGGGCAAGCTCTGTTCTTCG 61.302 60.000 0.00 0.00 0.00 3.79
1278 3833 3.181516 GCAAGCTCTGTTCTTCGTTATGG 60.182 47.826 0.00 0.00 0.00 2.74
1287 3842 2.905075 TCTTCGTTATGGTCATGCCTG 58.095 47.619 7.54 0.00 38.35 4.85
1292 3847 2.292267 GTTATGGTCATGCCTGTCTGG 58.708 52.381 7.54 0.00 38.35 3.86
1301 3856 1.452833 GCCTGTCTGGGCCTGATTC 60.453 63.158 16.63 5.29 45.92 2.52
1309 3864 3.114606 TCTGGGCCTGATTCAACTGATA 58.885 45.455 9.30 0.00 0.00 2.15
1318 3887 7.370383 GCCTGATTCAACTGATACAAAGAAAA 58.630 34.615 0.00 0.00 0.00 2.29
1320 3889 9.918630 CCTGATTCAACTGATACAAAGAAAAAT 57.081 29.630 0.00 0.00 0.00 1.82
1325 3894 9.959749 TTCAACTGATACAAAGAAAAATACACC 57.040 29.630 0.00 0.00 0.00 4.16
1326 3895 8.286800 TCAACTGATACAAAGAAAAATACACCG 58.713 33.333 0.00 0.00 0.00 4.94
1337 3906 2.000429 AATACACCGACGGTTGCTAC 58.000 50.000 19.02 0.00 31.02 3.58
1345 3953 1.070843 CGACGGTTGCTACAACAGTTG 60.071 52.381 15.52 12.03 0.00 3.16
1374 3983 3.721035 ACTGGCATGCTCAAAAGAAAAC 58.279 40.909 18.92 0.00 0.00 2.43
1377 3986 2.802247 GGCATGCTCAAAAGAAAACACC 59.198 45.455 18.92 0.00 0.00 4.16
1379 3988 4.060205 GCATGCTCAAAAGAAAACACCAT 58.940 39.130 11.37 0.00 0.00 3.55
1380 3989 4.512571 GCATGCTCAAAAGAAAACACCATT 59.487 37.500 11.37 0.00 0.00 3.16
1381 3990 5.007921 GCATGCTCAAAAGAAAACACCATTT 59.992 36.000 11.37 0.00 0.00 2.32
1382 3991 6.652245 CATGCTCAAAAGAAAACACCATTTC 58.348 36.000 0.00 0.00 39.16 2.17
1384 3993 4.511454 GCTCAAAAGAAAACACCATTTCCC 59.489 41.667 0.00 0.00 39.59 3.97
1385 3994 5.684813 GCTCAAAAGAAAACACCATTTCCCT 60.685 40.000 0.00 0.00 39.59 4.20
1386 3995 6.306643 TCAAAAGAAAACACCATTTCCCTT 57.693 33.333 0.00 0.00 39.59 3.95
1387 3996 6.716284 TCAAAAGAAAACACCATTTCCCTTT 58.284 32.000 0.00 0.00 39.59 3.11
1396 4059 3.443681 CACCATTTCCCTTTGCTAACGAT 59.556 43.478 0.00 0.00 0.00 3.73
1408 4071 2.159761 TGCTAACGATTTTCTTTCGCCG 60.160 45.455 0.00 0.00 40.19 6.46
1496 4165 3.156293 TGCTGTTTGGTACGTCTACCTA 58.844 45.455 8.89 0.00 42.94 3.08
1512 4181 4.820716 TCTACCTATAACTGACGGCTCTTC 59.179 45.833 0.00 0.00 0.00 2.87
1513 4182 3.362706 ACCTATAACTGACGGCTCTTCA 58.637 45.455 0.00 0.00 0.00 3.02
1514 4183 3.961408 ACCTATAACTGACGGCTCTTCAT 59.039 43.478 0.00 0.00 0.00 2.57
1516 4185 4.747108 CCTATAACTGACGGCTCTTCATTG 59.253 45.833 0.00 0.00 0.00 2.82
1517 4186 1.160137 AACTGACGGCTCTTCATTGC 58.840 50.000 0.00 0.00 0.00 3.56
1527 4200 5.008019 ACGGCTCTTCATTGCACTATATTTG 59.992 40.000 0.00 0.00 0.00 2.32
1549 4223 0.251354 TCATGGAGTTCTCTGCCAGC 59.749 55.000 0.00 0.00 34.74 4.85
1563 4237 1.677576 TGCCAGCACTTTGTTTCTGAG 59.322 47.619 0.00 0.00 0.00 3.35
1565 4239 1.952296 CCAGCACTTTGTTTCTGAGCT 59.048 47.619 0.00 0.00 0.00 4.09
1567 4241 2.877168 CAGCACTTTGTTTCTGAGCTCT 59.123 45.455 16.19 0.00 0.00 4.09
1570 4244 3.563390 GCACTTTGTTTCTGAGCTCTTCT 59.437 43.478 16.19 0.00 0.00 2.85
1587 4261 5.576337 TCTTCTTTGATTGTTTCTCGACG 57.424 39.130 0.00 0.00 0.00 5.12
1664 4342 2.009774 CCGCAAGAACATCCAAGGTAG 58.990 52.381 0.00 0.00 43.02 3.18
1667 4345 3.010420 GCAAGAACATCCAAGGTAGGTC 58.990 50.000 0.00 0.00 0.00 3.85
1669 4347 2.537143 AGAACATCCAAGGTAGGTCGT 58.463 47.619 0.00 0.00 0.00 4.34
1670 4348 3.705051 AGAACATCCAAGGTAGGTCGTA 58.295 45.455 0.00 0.00 0.00 3.43
1671 4349 3.446516 AGAACATCCAAGGTAGGTCGTAC 59.553 47.826 0.00 0.00 0.00 3.67
1685 4368 8.897752 AGGTAGGTCGTACTACTAATAAACTTG 58.102 37.037 15.26 0.00 42.29 3.16
1734 4418 6.256539 ACAGAATTCGTGTGCTCATATACTTG 59.743 38.462 9.00 0.00 0.00 3.16
1735 4419 6.256539 CAGAATTCGTGTGCTCATATACTTGT 59.743 38.462 0.00 0.00 0.00 3.16
1736 4420 7.435192 CAGAATTCGTGTGCTCATATACTTGTA 59.565 37.037 0.00 0.00 0.00 2.41
1791 4478 1.397672 CTTCAGATCGAGGAGAGCCA 58.602 55.000 0.00 0.00 35.47 4.75
1852 4539 0.893270 CCACAATGGCCGGTCTGAAA 60.893 55.000 7.97 0.00 0.00 2.69
1863 4555 1.339631 CGGTCTGAAAGTATGCCCCAA 60.340 52.381 0.00 0.00 33.76 4.12
1871 4563 5.329399 TGAAAGTATGCCCCAATACACTTT 58.671 37.500 0.00 0.00 38.54 2.66
1881 4573 4.441913 CCCCAATACACTTTGATTGCCATC 60.442 45.833 0.00 0.00 32.69 3.51
1890 4582 5.047519 CACTTTGATTGCCATCTTTCTCCTT 60.048 40.000 0.00 0.00 0.00 3.36
1892 4584 3.624777 TGATTGCCATCTTTCTCCTTCC 58.375 45.455 0.00 0.00 0.00 3.46
1900 4592 5.571658 GCCATCTTTCTCCTTCCAGTTTCTA 60.572 44.000 0.00 0.00 0.00 2.10
1905 4597 7.331791 TCTTTCTCCTTCCAGTTTCTATTAGC 58.668 38.462 0.00 0.00 0.00 3.09
1908 4600 6.879400 TCTCCTTCCAGTTTCTATTAGCTTC 58.121 40.000 0.00 0.00 0.00 3.86
1909 4601 5.661458 TCCTTCCAGTTTCTATTAGCTTCG 58.339 41.667 0.00 0.00 0.00 3.79
1910 4602 5.187186 TCCTTCCAGTTTCTATTAGCTTCGT 59.813 40.000 0.00 0.00 0.00 3.85
1911 4603 6.379133 TCCTTCCAGTTTCTATTAGCTTCGTA 59.621 38.462 0.00 0.00 0.00 3.43
1916 4608 8.133627 TCCAGTTTCTATTAGCTTCGTATACAC 58.866 37.037 3.32 0.00 0.00 2.90
1930 4622 7.008447 GCTTCGTATACACAGTCTTCAAACTAG 59.992 40.741 3.32 0.00 0.00 2.57
1939 4631 7.547370 ACACAGTCTTCAAACTAGAGATTATGC 59.453 37.037 0.00 0.00 0.00 3.14
1998 4691 5.710984 CTTATGGGCTACGATTTCGACTAT 58.289 41.667 7.01 1.04 43.02 2.12
2112 4805 5.111989 CAGAGGAAAATCGTAAGCTCATCA 58.888 41.667 0.00 0.00 37.18 3.07
2113 4806 5.757320 CAGAGGAAAATCGTAAGCTCATCAT 59.243 40.000 0.00 0.00 37.18 2.45
2114 4807 6.259608 CAGAGGAAAATCGTAAGCTCATCATT 59.740 38.462 0.00 0.00 37.18 2.57
2117 4810 5.278022 GGAAAATCGTAAGCTCATCATTCCC 60.278 44.000 0.00 0.00 37.18 3.97
2124 4817 1.493446 AGCTCATCATTCCCTGCATCA 59.507 47.619 0.00 0.00 0.00 3.07
2155 4853 5.677567 TCTGATATTTCTTGCTGCATCAGA 58.322 37.500 20.05 20.05 43.60 3.27
2164 4862 1.372087 GCTGCATCAGAAAGGGGTCG 61.372 60.000 0.00 0.00 32.44 4.79
2193 4893 5.346822 CAGTTAATTGCTGCATCTGTTTTCC 59.653 40.000 1.84 0.00 0.00 3.13
2213 4914 0.664166 AGCACCGAAAAATTGCTGCG 60.664 50.000 0.00 0.00 44.93 5.18
2227 4928 1.571460 CTGCGGCAGTGACAGTTTC 59.429 57.895 21.60 0.00 0.00 2.78
2236 4937 2.614057 CAGTGACAGTTTCTTGTCCCAC 59.386 50.000 3.94 0.00 45.40 4.61
2353 5054 2.610727 CGAGACCCTGAACCAGAAGAAC 60.611 54.545 0.00 0.00 32.44 3.01
2359 5060 0.110486 TGAACCAGAAGAACCCAGGC 59.890 55.000 0.00 0.00 0.00 4.85
2365 5066 2.027625 GAAGAACCCAGGCGACACG 61.028 63.158 0.00 0.00 0.00 4.49
2366 5067 2.430382 GAAGAACCCAGGCGACACGA 62.430 60.000 0.00 0.00 0.00 4.35
2367 5068 2.432628 GAACCCAGGCGACACGAG 60.433 66.667 0.00 0.00 0.00 4.18
2503 5204 1.069765 CCATGGATTCCCTCGTCGG 59.930 63.158 5.56 0.00 0.00 4.79
2509 5210 1.379977 ATTCCCTCGTCGGCTCTCA 60.380 57.895 0.00 0.00 0.00 3.27
2510 5211 0.757188 ATTCCCTCGTCGGCTCTCAT 60.757 55.000 0.00 0.00 0.00 2.90
2518 5219 2.887568 CGGCTCTCATCACCGCAC 60.888 66.667 0.00 0.00 40.55 5.34
2531 5232 1.659335 CCGCACAACTGCAAAGCTG 60.659 57.895 0.00 0.00 44.50 4.24
2559 5260 3.497031 GGCCGCCGCTCAGTTTAC 61.497 66.667 0.00 0.00 34.44 2.01
2568 5269 2.263077 CGCTCAGTTTACCAGCAGTAG 58.737 52.381 0.00 0.00 32.27 2.57
2587 5288 0.040067 GCTGACGAAACTGCCTTTGG 60.040 55.000 0.00 0.00 0.00 3.28
2589 5290 1.002468 CTGACGAAACTGCCTTTGGTG 60.002 52.381 0.00 0.00 31.44 4.17
2706 5407 0.986019 TCCCCACGCCATTGGAGTAT 60.986 55.000 11.99 0.00 39.24 2.12
2716 5417 4.125703 GCCATTGGAGTATCTGTCAGAAG 58.874 47.826 6.64 0.00 33.73 2.85
2732 5442 0.110644 GAAGCTGAGCGAACAAACGG 60.111 55.000 0.00 0.00 0.00 4.44
2753 5463 2.290641 GTCTGAAACGATTGTGCAGGTT 59.709 45.455 13.47 0.00 34.09 3.50
2951 5670 0.178068 ATATGCTTCGTCCGCCTTGT 59.822 50.000 0.00 0.00 0.00 3.16
2964 5686 4.989168 GTCCGCCTTGTCTATATTAACAGG 59.011 45.833 0.00 0.00 0.00 4.00
2965 5687 4.039973 TCCGCCTTGTCTATATTAACAGGG 59.960 45.833 11.71 11.71 43.49 4.45
2966 5688 4.315803 CGCCTTGTCTATATTAACAGGGG 58.684 47.826 15.63 10.96 41.57 4.79
2973 5695 6.906848 TGTCTATATTAACAGGGGAAAAGGG 58.093 40.000 0.00 0.00 0.00 3.95
2977 5699 1.849548 TAACAGGGGAAAAGGGGGAA 58.150 50.000 0.00 0.00 0.00 3.97
3012 5734 3.298619 TCGAGGGAAAACCCGTATATGA 58.701 45.455 0.00 0.00 41.63 2.15
3014 5736 3.994392 CGAGGGAAAACCCGTATATGATG 59.006 47.826 0.00 0.00 41.63 3.07
3019 5741 4.274950 GGAAAACCCGTATATGATGTGGTG 59.725 45.833 0.00 0.00 0.00 4.17
3062 5791 1.939974 TGACTGATGAATGCGTAGGC 58.060 50.000 0.00 0.00 40.52 3.93
3063 5792 0.855349 GACTGATGAATGCGTAGGCG 59.145 55.000 2.53 0.00 44.10 5.52
3080 5809 0.110238 GCGTTGCATGTACAGGTGTG 60.110 55.000 9.57 0.00 0.00 3.82
3097 5826 4.283467 AGGTGTGCTACTTGTGAACTGATA 59.717 41.667 0.00 0.00 0.00 2.15
3104 5833 5.403766 GCTACTTGTGAACTGATATGATCGG 59.596 44.000 0.00 0.00 41.49 4.18
3143 5872 4.939439 AGCACCGTAAATCCGTAAAGATTT 59.061 37.500 5.02 5.02 45.89 2.17
3163 5892 2.362736 TGCTCATTCAGATGGAAGCAC 58.637 47.619 0.00 0.00 37.87 4.40
3185 5914 1.726248 GGAAAAATTGCACGTGCCATC 59.274 47.619 35.72 22.41 41.18 3.51
3194 5923 2.613595 TGCACGTGCCATCTGATATTTC 59.386 45.455 35.72 5.59 41.18 2.17
3266 6000 4.572909 ACGAAGTACCTCAAACATAACCC 58.427 43.478 0.00 0.00 41.94 4.11
3269 6003 5.121768 CGAAGTACCTCAAACATAACCCAAG 59.878 44.000 0.00 0.00 0.00 3.61
3409 6143 1.822990 CAAATGGGCTGCTCATTGACT 59.177 47.619 27.03 10.18 35.31 3.41
3414 6148 0.455633 GGCTGCTCATTGACTTTGCG 60.456 55.000 0.00 0.00 0.00 4.85
3415 6149 1.069378 GCTGCTCATTGACTTTGCGC 61.069 55.000 0.00 0.00 0.00 6.09
3425 6159 4.533225 TTGACTTTGCGCGTTACTTTTA 57.467 36.364 8.43 0.00 0.00 1.52
3498 8921 6.918892 TGAAAATGTTCATGTATCTACGGG 57.081 37.500 0.00 0.00 38.88 5.28
3504 8927 5.364778 TGTTCATGTATCTACGGGAAATGG 58.635 41.667 0.00 0.00 0.00 3.16
3512 8935 0.916086 TACGGGAAATGGCATCACCT 59.084 50.000 17.91 6.44 40.22 4.00
3563 8992 3.586470 AGGAACCATACAAACACACCA 57.414 42.857 0.00 0.00 0.00 4.17
3565 8994 4.479158 AGGAACCATACAAACACACCAAT 58.521 39.130 0.00 0.00 0.00 3.16
3568 8997 5.336134 GGAACCATACAAACACACCAATACC 60.336 44.000 0.00 0.00 0.00 2.73
3574 9003 1.519408 AACACACCAATACCACTCGC 58.481 50.000 0.00 0.00 0.00 5.03
3576 9005 1.003118 ACACACCAATACCACTCGCAT 59.997 47.619 0.00 0.00 0.00 4.73
3596 9025 6.866770 TCGCATACCAACTATACAATAGAAGC 59.133 38.462 1.05 0.00 0.00 3.86
3612 9041 2.731691 AAGCTCACACCGGCGAACAT 62.732 55.000 9.30 0.00 0.00 2.71
3628 9057 5.918011 GGCGAACATGAAACTAAAAACATGA 59.082 36.000 0.00 0.00 41.45 3.07
3640 9069 8.546597 AACTAAAAACATGAACAAAGCAAAGT 57.453 26.923 0.00 0.00 0.00 2.66
3668 9097 4.697352 TGAAGCACTAAATCAAAGGAGCTC 59.303 41.667 4.71 4.71 31.64 4.09
3712 9141 2.846371 CTTCCCGAAGCCTTCTGTG 58.154 57.895 2.49 0.00 0.00 3.66
3713 9142 0.321671 CTTCCCGAAGCCTTCTGTGA 59.678 55.000 2.49 0.00 0.00 3.58
3714 9143 0.984230 TTCCCGAAGCCTTCTGTGAT 59.016 50.000 2.49 0.00 0.00 3.06
3715 9144 0.537188 TCCCGAAGCCTTCTGTGATC 59.463 55.000 2.49 0.00 0.00 2.92
3716 9145 0.807667 CCCGAAGCCTTCTGTGATCG 60.808 60.000 2.49 0.00 0.00 3.69
3717 9146 0.807667 CCGAAGCCTTCTGTGATCGG 60.808 60.000 2.49 0.00 43.08 4.18
3718 9147 0.807667 CGAAGCCTTCTGTGATCGGG 60.808 60.000 2.49 0.00 0.00 5.14
3719 9148 0.462759 GAAGCCTTCTGTGATCGGGG 60.463 60.000 0.00 0.00 0.00 5.73
3720 9149 0.909610 AAGCCTTCTGTGATCGGGGA 60.910 55.000 0.00 0.00 0.00 4.81
3721 9150 0.909610 AGCCTTCTGTGATCGGGGAA 60.910 55.000 0.00 0.00 0.00 3.97
3722 9151 0.462759 GCCTTCTGTGATCGGGGAAG 60.463 60.000 11.80 11.80 36.08 3.46
3723 9152 0.179000 CCTTCTGTGATCGGGGAAGG 59.821 60.000 19.00 19.00 45.49 3.46
3724 9153 0.905357 CTTCTGTGATCGGGGAAGGT 59.095 55.000 11.23 0.00 33.65 3.50
3725 9154 0.902531 TTCTGTGATCGGGGAAGGTC 59.097 55.000 0.00 0.00 0.00 3.85
3726 9155 0.252057 TCTGTGATCGGGGAAGGTCA 60.252 55.000 0.00 0.00 0.00 4.02
3727 9156 0.833287 CTGTGATCGGGGAAGGTCAT 59.167 55.000 0.00 0.00 0.00 3.06
3728 9157 1.210478 CTGTGATCGGGGAAGGTCATT 59.790 52.381 0.00 0.00 0.00 2.57
3729 9158 1.633432 TGTGATCGGGGAAGGTCATTT 59.367 47.619 0.00 0.00 0.00 2.32
3730 9159 2.841266 TGTGATCGGGGAAGGTCATTTA 59.159 45.455 0.00 0.00 0.00 1.40
3731 9160 3.264706 TGTGATCGGGGAAGGTCATTTAA 59.735 43.478 0.00 0.00 0.00 1.52
3732 9161 4.263550 TGTGATCGGGGAAGGTCATTTAAA 60.264 41.667 0.00 0.00 0.00 1.52
3733 9162 4.703093 GTGATCGGGGAAGGTCATTTAAAA 59.297 41.667 0.00 0.00 0.00 1.52
3734 9163 5.184287 GTGATCGGGGAAGGTCATTTAAAAA 59.816 40.000 0.00 0.00 0.00 1.94
3735 9164 5.184287 TGATCGGGGAAGGTCATTTAAAAAC 59.816 40.000 0.00 0.00 0.00 2.43
3736 9165 4.471548 TCGGGGAAGGTCATTTAAAAACA 58.528 39.130 0.00 0.00 0.00 2.83
3737 9166 4.278919 TCGGGGAAGGTCATTTAAAAACAC 59.721 41.667 0.00 0.00 0.00 3.32
3738 9167 4.279922 CGGGGAAGGTCATTTAAAAACACT 59.720 41.667 0.00 0.00 0.00 3.55
3739 9168 5.474189 CGGGGAAGGTCATTTAAAAACACTA 59.526 40.000 0.00 0.00 0.00 2.74
3740 9169 6.349033 CGGGGAAGGTCATTTAAAAACACTAG 60.349 42.308 0.00 0.00 0.00 2.57
3741 9170 6.717997 GGGGAAGGTCATTTAAAAACACTAGA 59.282 38.462 0.00 0.00 0.00 2.43
3742 9171 7.396339 GGGGAAGGTCATTTAAAAACACTAGAT 59.604 37.037 0.00 0.00 0.00 1.98
3743 9172 8.459635 GGGAAGGTCATTTAAAAACACTAGATC 58.540 37.037 0.00 0.00 0.00 2.75
3744 9173 8.175716 GGAAGGTCATTTAAAAACACTAGATCG 58.824 37.037 0.00 0.00 0.00 3.69
3745 9174 7.611213 AGGTCATTTAAAAACACTAGATCGG 57.389 36.000 0.00 0.00 0.00 4.18
3746 9175 6.093633 AGGTCATTTAAAAACACTAGATCGGC 59.906 38.462 0.00 0.00 0.00 5.54
3747 9176 6.255950 GTCATTTAAAAACACTAGATCGGCC 58.744 40.000 0.00 0.00 0.00 6.13
3748 9177 5.355910 TCATTTAAAAACACTAGATCGGCCC 59.644 40.000 0.00 0.00 0.00 5.80
3749 9178 2.871096 AAAAACACTAGATCGGCCCA 57.129 45.000 0.00 0.00 0.00 5.36
3750 9179 3.366052 AAAAACACTAGATCGGCCCAT 57.634 42.857 0.00 0.00 0.00 4.00
3751 9180 3.366052 AAAACACTAGATCGGCCCATT 57.634 42.857 0.00 0.00 0.00 3.16
3752 9181 3.366052 AAACACTAGATCGGCCCATTT 57.634 42.857 0.00 0.00 0.00 2.32
3753 9182 3.366052 AACACTAGATCGGCCCATTTT 57.634 42.857 0.00 0.00 0.00 1.82
3754 9183 3.366052 ACACTAGATCGGCCCATTTTT 57.634 42.857 0.00 0.00 0.00 1.94
3755 9184 3.016736 ACACTAGATCGGCCCATTTTTG 58.983 45.455 0.00 0.00 0.00 2.44
3756 9185 3.016736 CACTAGATCGGCCCATTTTTGT 58.983 45.455 0.00 0.00 0.00 2.83
3757 9186 3.443681 CACTAGATCGGCCCATTTTTGTT 59.556 43.478 0.00 0.00 0.00 2.83
3758 9187 3.443681 ACTAGATCGGCCCATTTTTGTTG 59.556 43.478 0.00 0.00 0.00 3.33
3759 9188 2.524306 AGATCGGCCCATTTTTGTTGA 58.476 42.857 0.00 0.00 0.00 3.18
3760 9189 2.896685 AGATCGGCCCATTTTTGTTGAA 59.103 40.909 0.00 0.00 0.00 2.69
3761 9190 2.810439 TCGGCCCATTTTTGTTGAAG 57.190 45.000 0.00 0.00 0.00 3.02
3762 9191 2.311463 TCGGCCCATTTTTGTTGAAGA 58.689 42.857 0.00 0.00 0.00 2.87
3763 9192 2.695666 TCGGCCCATTTTTGTTGAAGAA 59.304 40.909 0.00 0.00 0.00 2.52
3764 9193 3.133003 TCGGCCCATTTTTGTTGAAGAAA 59.867 39.130 0.00 0.00 0.00 2.52
3765 9194 3.873952 CGGCCCATTTTTGTTGAAGAAAA 59.126 39.130 0.00 0.00 0.00 2.29
3766 9195 4.333926 CGGCCCATTTTTGTTGAAGAAAAA 59.666 37.500 14.09 14.09 36.86 1.94
3823 9253 0.957395 CTCGCTTGGCACACTCCAAT 60.957 55.000 0.00 0.00 44.39 3.16
3829 9259 0.983467 TGGCACACTCCAATAGCTGA 59.017 50.000 0.00 0.00 32.18 4.26
3831 9261 1.012841 GCACACTCCAATAGCTGAGC 58.987 55.000 0.00 0.00 31.65 4.26
3833 9263 0.543749 ACACTCCAATAGCTGAGCCC 59.456 55.000 0.00 0.00 31.65 5.19
3834 9264 0.179034 CACTCCAATAGCTGAGCCCC 60.179 60.000 0.00 0.00 31.65 5.80
3835 9265 0.621571 ACTCCAATAGCTGAGCCCCA 60.622 55.000 0.00 0.00 31.65 4.96
3836 9266 0.548031 CTCCAATAGCTGAGCCCCAA 59.452 55.000 0.00 0.00 0.00 4.12
3837 9267 0.998928 TCCAATAGCTGAGCCCCAAA 59.001 50.000 0.00 0.00 0.00 3.28
3851 9281 2.101415 GCCCCAAAATGTAGGAAGATGC 59.899 50.000 0.00 0.00 0.00 3.91
3882 9312 0.328258 AGAAGGGGTCCAAATGACGG 59.672 55.000 0.00 0.00 45.46 4.79
3884 9314 2.034999 GGGGTCCAAATGACGGCA 59.965 61.111 0.00 0.00 45.46 5.69
3888 9318 0.240945 GGTCCAAATGACGGCACTTG 59.759 55.000 5.22 5.22 45.46 3.16
3896 9326 0.537143 TGACGGCACTTGCAAGGAAT 60.537 50.000 29.18 10.64 44.36 3.01
3898 9328 1.130561 GACGGCACTTGCAAGGAATAC 59.869 52.381 29.18 13.42 44.36 1.89
3899 9329 0.096976 CGGCACTTGCAAGGAATACG 59.903 55.000 29.18 20.42 44.36 3.06
3900 9330 1.165270 GGCACTTGCAAGGAATACGT 58.835 50.000 29.18 5.39 44.36 3.57
3902 9332 1.201921 GCACTTGCAAGGAATACGTCG 60.202 52.381 29.18 2.39 41.59 5.12
3903 9333 2.066262 CACTTGCAAGGAATACGTCGT 58.934 47.619 29.18 2.21 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.878116 GGTGTGAAATACTTGTAGCCACATA 59.122 40.000 0.00 0.00 35.83 2.29
91 112 1.120530 GTCCTCGGGCCATAGAAGAA 58.879 55.000 4.39 0.00 0.00 2.52
93 114 1.048724 TGGTCCTCGGGCCATAGAAG 61.049 60.000 4.89 0.00 0.00 2.85
110 131 5.655488 GATGGACGATGGAGTTCTATATGG 58.345 45.833 0.00 0.00 0.00 2.74
155 176 4.248842 TGGTGGTGCTGGTGGACG 62.249 66.667 0.00 0.00 35.23 4.79
190 220 0.881118 TCGGCCTTCATTTTCAGTGC 59.119 50.000 0.00 0.00 0.00 4.40
274 1473 6.090129 GTGAGAGTGACAGAATGAGTAGTTC 58.910 44.000 0.00 0.00 39.69 3.01
279 1478 4.525874 TCATGTGAGAGTGACAGAATGAGT 59.474 41.667 0.00 0.00 39.69 3.41
280 1479 5.069501 TCATGTGAGAGTGACAGAATGAG 57.930 43.478 0.00 0.00 39.69 2.90
301 1500 1.427592 GAGCATGAGCCGCAGAGTTC 61.428 60.000 0.00 0.00 43.56 3.01
356 2114 6.000246 TGTGCTTTGATCTGGTTATATCCA 58.000 37.500 2.54 2.54 36.00 3.41
362 2120 3.932710 GTCGATGTGCTTTGATCTGGTTA 59.067 43.478 0.00 0.00 0.00 2.85
363 2121 2.744202 GTCGATGTGCTTTGATCTGGTT 59.256 45.455 0.00 0.00 0.00 3.67
426 2208 6.151691 GTCACGTGTGTACCATTTCTTACTA 58.848 40.000 16.51 0.00 0.00 1.82
428 2210 4.143473 CGTCACGTGTGTACCATTTCTTAC 60.143 45.833 16.51 0.00 0.00 2.34
439 2883 2.427905 GCGAGCGTCACGTGTGTA 60.428 61.111 16.51 0.00 0.00 2.90
477 2934 0.395036 TGGGTATGGTGATTTGCCGG 60.395 55.000 0.00 0.00 0.00 6.13
479 2936 2.624838 CTCATGGGTATGGTGATTTGCC 59.375 50.000 0.00 0.00 34.97 4.52
480 2937 3.290710 ACTCATGGGTATGGTGATTTGC 58.709 45.455 0.00 0.00 34.97 3.68
511 2968 5.565638 CGTGCGTCACAGACTATATTATGAG 59.434 44.000 9.95 0.00 33.40 2.90
514 2971 4.227538 GCGTGCGTCACAGACTATATTAT 58.772 43.478 9.95 0.00 33.40 1.28
515 2972 3.549423 GGCGTGCGTCACAGACTATATTA 60.549 47.826 9.95 0.00 33.40 0.98
516 2973 2.460918 GCGTGCGTCACAGACTATATT 58.539 47.619 9.95 0.00 33.40 1.28
517 2974 1.269102 GGCGTGCGTCACAGACTATAT 60.269 52.381 9.95 0.00 33.40 0.86
540 2997 2.803956 AGTGTAGGAATCCACTCGTGA 58.196 47.619 0.61 0.00 37.34 4.35
556 3013 5.407387 CACTGCCGTTTAAACTATGTAGTGT 59.593 40.000 25.05 11.12 36.50 3.55
560 3017 3.685756 GGCACTGCCGTTTAAACTATGTA 59.314 43.478 16.01 3.91 39.62 2.29
561 3018 2.486592 GGCACTGCCGTTTAAACTATGT 59.513 45.455 16.01 6.97 39.62 2.29
578 3051 1.721664 ATGCATCAGCGATGTGGCAC 61.722 55.000 20.36 11.55 46.23 5.01
588 3061 0.879765 GGTAGCCATCATGCATCAGC 59.120 55.000 0.00 0.00 42.57 4.26
590 3063 0.845337 TGGGTAGCCATCATGCATCA 59.155 50.000 10.27 0.00 0.00 3.07
595 3068 2.146342 GACGATTGGGTAGCCATCATG 58.854 52.381 15.77 7.88 0.00 3.07
596 3069 1.072331 GGACGATTGGGTAGCCATCAT 59.928 52.381 15.77 6.12 0.00 2.45
677 3150 0.482887 AGCTTACCCCAGCCAACTTT 59.517 50.000 0.00 0.00 41.12 2.66
695 3168 1.878656 GATAGGATCGGACCGGCCAG 61.879 65.000 22.92 0.00 35.94 4.85
728 3201 6.785488 TTGATCGTTCATAATCATACTGGC 57.215 37.500 0.00 0.00 32.24 4.85
795 3283 3.063485 GCTTCTCTCTTTCTTTGCTCGT 58.937 45.455 0.00 0.00 0.00 4.18
802 3290 4.093011 TCCAGCTAGCTTCTCTCTTTCTT 58.907 43.478 16.46 0.00 0.00 2.52
810 3298 1.202521 GCCTTCTCCAGCTAGCTTCTC 60.203 57.143 16.46 0.00 0.00 2.87
812 3300 0.539051 TGCCTTCTCCAGCTAGCTTC 59.461 55.000 16.46 0.00 0.00 3.86
813 3301 0.540923 CTGCCTTCTCCAGCTAGCTT 59.459 55.000 16.46 0.00 0.00 3.74
815 3303 1.145819 CCTGCCTTCTCCAGCTAGC 59.854 63.158 6.62 6.62 0.00 3.42
816 3304 1.134551 GTTCCTGCCTTCTCCAGCTAG 60.135 57.143 0.00 0.00 0.00 3.42
817 3305 0.905357 GTTCCTGCCTTCTCCAGCTA 59.095 55.000 0.00 0.00 0.00 3.32
821 3309 2.069776 CCAGTTCCTGCCTTCTCCA 58.930 57.895 0.00 0.00 0.00 3.86
879 3387 2.600470 GGAAGGTGGTTGGGTGCC 60.600 66.667 0.00 0.00 0.00 5.01
904 3426 1.416401 TGACGAGGATGGGCTTTATCC 59.584 52.381 0.00 7.57 43.59 2.59
928 3450 2.027460 CAAGGGCCGCAACACAAC 59.973 61.111 0.00 0.00 0.00 3.32
929 3451 2.441164 ACAAGGGCCGCAACACAA 60.441 55.556 0.00 0.00 0.00 3.33
941 3463 2.430704 ATCACCACCCAGCCACAAGG 62.431 60.000 0.00 0.00 38.23 3.61
942 3464 1.075482 ATCACCACCCAGCCACAAG 59.925 57.895 0.00 0.00 0.00 3.16
943 3465 1.228521 CATCACCACCCAGCCACAA 60.229 57.895 0.00 0.00 0.00 3.33
946 3468 1.609239 GATCATCACCACCCAGCCA 59.391 57.895 0.00 0.00 0.00 4.75
947 3469 1.152881 GGATCATCACCACCCAGCC 60.153 63.158 0.00 0.00 0.00 4.85
948 3470 0.257039 AAGGATCATCACCACCCAGC 59.743 55.000 0.00 0.00 0.00 4.85
950 3472 1.371467 ACAAGGATCATCACCACCCA 58.629 50.000 0.00 0.00 0.00 4.51
951 3473 2.094675 CAACAAGGATCATCACCACCC 58.905 52.381 0.00 0.00 0.00 4.61
952 3474 2.795329 ACAACAAGGATCATCACCACC 58.205 47.619 0.00 0.00 0.00 4.61
953 3475 7.624360 TTTATACAACAAGGATCATCACCAC 57.376 36.000 0.00 0.00 0.00 4.16
954 3476 9.559732 CTATTTATACAACAAGGATCATCACCA 57.440 33.333 0.00 0.00 0.00 4.17
955 3477 9.778741 TCTATTTATACAACAAGGATCATCACC 57.221 33.333 0.00 0.00 0.00 4.02
1012 3534 1.517257 ACACGCTACGCAGATCAGC 60.517 57.895 0.00 0.00 0.00 4.26
1015 3537 1.805539 TGCACACGCTACGCAGATC 60.806 57.895 0.00 0.00 39.64 2.75
1020 3542 3.843240 GAGCTGCACACGCTACGC 61.843 66.667 1.02 0.00 37.96 4.42
1021 3543 3.181967 GGAGCTGCACACGCTACG 61.182 66.667 0.00 0.00 37.96 3.51
1022 3544 2.097038 CAGGAGCTGCACACGCTAC 61.097 63.158 8.35 0.34 37.96 3.58
1023 3545 2.262603 CAGGAGCTGCACACGCTA 59.737 61.111 8.35 0.00 37.96 4.26
1037 3569 1.265236 AGAGTGGAAGACAGAGCAGG 58.735 55.000 0.00 0.00 0.00 4.85
1038 3570 2.353605 GGAAGAGTGGAAGACAGAGCAG 60.354 54.545 0.00 0.00 0.00 4.24
1109 3641 2.742372 CAAGAACCCGGCCAGACG 60.742 66.667 2.24 0.00 0.00 4.18
1111 3643 0.536460 GAAACAAGAACCCGGCCAGA 60.536 55.000 2.24 0.00 0.00 3.86
1117 3649 3.004734 AGAATTGCAGAAACAAGAACCCG 59.995 43.478 0.00 0.00 31.96 5.28
1118 3650 4.301628 CAGAATTGCAGAAACAAGAACCC 58.698 43.478 0.00 0.00 31.96 4.11
1134 3666 4.396522 AGCAAGAAAGACAGAGCAGAATT 58.603 39.130 0.00 0.00 0.00 2.17
1135 3667 4.018484 AGCAAGAAAGACAGAGCAGAAT 57.982 40.909 0.00 0.00 0.00 2.40
1136 3668 3.482156 AGCAAGAAAGACAGAGCAGAA 57.518 42.857 0.00 0.00 0.00 3.02
1137 3669 3.616076 GCTAGCAAGAAAGACAGAGCAGA 60.616 47.826 10.63 0.00 0.00 4.26
1138 3670 2.672381 GCTAGCAAGAAAGACAGAGCAG 59.328 50.000 10.63 0.00 0.00 4.24
1140 3672 2.971307 AGCTAGCAAGAAAGACAGAGC 58.029 47.619 18.83 0.00 0.00 4.09
1141 3673 4.314121 ACAAGCTAGCAAGAAAGACAGAG 58.686 43.478 18.83 0.00 0.00 3.35
1144 3676 4.036734 CCAAACAAGCTAGCAAGAAAGACA 59.963 41.667 18.83 0.00 0.00 3.41
1145 3677 4.540824 CCAAACAAGCTAGCAAGAAAGAC 58.459 43.478 18.83 0.00 0.00 3.01
1204 3738 1.202031 GCAGATAAAACAACGGGAGCG 60.202 52.381 0.00 0.00 0.00 5.03
1260 3815 3.585862 TGACCATAACGAAGAACAGAGC 58.414 45.455 0.00 0.00 0.00 4.09
1272 3827 2.292267 CCAGACAGGCATGACCATAAC 58.708 52.381 4.84 0.00 43.14 1.89
1287 3842 1.003580 TCAGTTGAATCAGGCCCAGAC 59.996 52.381 0.00 0.00 0.00 3.51
1292 3847 4.943705 TCTTTGTATCAGTTGAATCAGGCC 59.056 41.667 0.00 0.00 0.00 5.19
1294 3849 9.918630 ATTTTTCTTTGTATCAGTTGAATCAGG 57.081 29.630 0.00 0.00 0.00 3.86
1301 3856 8.286800 TCGGTGTATTTTTCTTTGTATCAGTTG 58.713 33.333 0.00 0.00 0.00 3.16
1309 3864 3.878699 ACCGTCGGTGTATTTTTCTTTGT 59.121 39.130 18.08 0.00 32.98 2.83
1318 3887 1.273048 TGTAGCAACCGTCGGTGTATT 59.727 47.619 19.67 6.93 35.34 1.89
1320 3889 0.672889 TTGTAGCAACCGTCGGTGTA 59.327 50.000 19.67 7.49 35.34 2.90
1325 3894 1.070843 CAACTGTTGTAGCAACCGTCG 60.071 52.381 12.30 0.00 0.00 5.12
1326 3895 1.937899 ACAACTGTTGTAGCAACCGTC 59.062 47.619 23.62 0.00 43.27 4.79
1337 3906 3.119531 TGCCAGTTTCTTCACAACTGTTG 60.120 43.478 18.44 18.44 46.67 3.33
1345 3953 1.881973 TGAGCATGCCAGTTTCTTCAC 59.118 47.619 15.66 0.00 0.00 3.18
1357 3965 3.456280 TGGTGTTTTCTTTTGAGCATGC 58.544 40.909 10.51 10.51 0.00 4.06
1374 3983 2.817258 TCGTTAGCAAAGGGAAATGGTG 59.183 45.455 0.00 0.00 0.00 4.17
1377 3986 6.389906 AGAAAATCGTTAGCAAAGGGAAATG 58.610 36.000 0.00 0.00 0.00 2.32
1379 3988 6.399639 AAGAAAATCGTTAGCAAAGGGAAA 57.600 33.333 0.00 0.00 0.00 3.13
1380 3989 6.399639 AAAGAAAATCGTTAGCAAAGGGAA 57.600 33.333 0.00 0.00 0.00 3.97
1381 3990 5.334569 CGAAAGAAAATCGTTAGCAAAGGGA 60.335 40.000 0.00 0.00 35.64 4.20
1382 3991 4.851558 CGAAAGAAAATCGTTAGCAAAGGG 59.148 41.667 0.00 0.00 35.64 3.95
1384 3993 4.320953 GGCGAAAGAAAATCGTTAGCAAAG 59.679 41.667 11.55 0.00 37.96 2.77
1385 3994 4.223659 GGCGAAAGAAAATCGTTAGCAAA 58.776 39.130 11.55 0.00 37.96 3.68
1386 3995 3.665848 CGGCGAAAGAAAATCGTTAGCAA 60.666 43.478 0.00 0.00 37.96 3.91
1387 3996 2.159761 CGGCGAAAGAAAATCGTTAGCA 60.160 45.455 0.00 0.00 37.96 3.49
1396 4059 1.009449 CAACCGCGGCGAAAGAAAA 60.009 52.632 28.58 0.00 0.00 2.29
1408 4071 4.030452 GACAGTGCCTGCAACCGC 62.030 66.667 0.00 0.00 34.37 5.68
1428 4091 1.494960 AGGACTCCATCTTCTCAGGC 58.505 55.000 0.00 0.00 0.00 4.85
1433 4096 1.342076 TGGCGTAGGACTCCATCTTCT 60.342 52.381 0.00 0.00 26.05 2.85
1496 4165 2.939103 GCAATGAAGAGCCGTCAGTTAT 59.061 45.455 0.00 0.00 0.00 1.89
1512 4181 7.176165 ACTCCATGATCCAAATATAGTGCAATG 59.824 37.037 0.00 0.00 0.00 2.82
1513 4182 7.236529 ACTCCATGATCCAAATATAGTGCAAT 58.763 34.615 0.00 0.00 0.00 3.56
1514 4183 6.604171 ACTCCATGATCCAAATATAGTGCAA 58.396 36.000 0.00 0.00 0.00 4.08
1516 4185 6.939163 AGAACTCCATGATCCAAATATAGTGC 59.061 38.462 0.00 0.00 0.00 4.40
1517 4186 8.373981 AGAGAACTCCATGATCCAAATATAGTG 58.626 37.037 0.00 0.00 0.00 2.74
1527 4200 1.487976 TGGCAGAGAACTCCATGATCC 59.512 52.381 0.00 0.00 0.00 3.36
1549 4223 5.747951 AAGAAGAGCTCAGAAACAAAGTG 57.252 39.130 17.77 0.00 0.00 3.16
1563 4237 5.378180 GTCGAGAAACAATCAAAGAAGAGC 58.622 41.667 0.00 0.00 0.00 4.09
1565 4239 5.047847 ACGTCGAGAAACAATCAAAGAAGA 58.952 37.500 0.00 0.00 0.00 2.87
1567 4241 4.569162 ACACGTCGAGAAACAATCAAAGAA 59.431 37.500 0.00 0.00 0.00 2.52
1570 4244 4.330347 TGAACACGTCGAGAAACAATCAAA 59.670 37.500 0.00 0.00 0.00 2.69
1587 4261 2.744202 GGTGTCATCCATGTCTGAACAC 59.256 50.000 13.19 13.19 38.48 3.32
1664 4342 6.254373 GGTGCAAGTTTATTAGTAGTACGACC 59.746 42.308 2.14 0.00 0.00 4.79
1667 4345 7.585286 TTGGTGCAAGTTTATTAGTAGTACG 57.415 36.000 0.00 0.00 0.00 3.67
1669 4347 8.545472 AGGATTGGTGCAAGTTTATTAGTAGTA 58.455 33.333 0.00 0.00 0.00 1.82
1670 4348 7.402862 AGGATTGGTGCAAGTTTATTAGTAGT 58.597 34.615 0.00 0.00 0.00 2.73
1671 4349 7.770897 AGAGGATTGGTGCAAGTTTATTAGTAG 59.229 37.037 0.00 0.00 0.00 2.57
1685 4368 3.841643 CATGAAAACAGAGGATTGGTGC 58.158 45.455 0.00 0.00 0.00 5.01
1734 4418 6.074544 AGTCTGCGATTTGGTAGATACTAC 57.925 41.667 0.00 0.00 31.30 2.73
1735 4419 6.769341 TGTAGTCTGCGATTTGGTAGATACTA 59.231 38.462 0.00 0.00 31.30 1.82
1736 4420 5.593095 TGTAGTCTGCGATTTGGTAGATACT 59.407 40.000 0.00 0.00 31.30 2.12
1852 4539 4.584638 TCAAAGTGTATTGGGGCATACT 57.415 40.909 0.00 0.00 0.00 2.12
1863 4555 6.096001 GGAGAAAGATGGCAATCAAAGTGTAT 59.904 38.462 3.34 0.00 35.03 2.29
1871 4563 3.010472 TGGAAGGAGAAAGATGGCAATCA 59.990 43.478 3.34 0.00 35.03 2.57
1881 4573 7.334858 AGCTAATAGAAACTGGAAGGAGAAAG 58.665 38.462 0.00 0.00 39.30 2.62
1890 4582 8.133627 GTGTATACGAAGCTAATAGAAACTGGA 58.866 37.037 0.00 0.00 0.00 3.86
1892 4584 8.851960 TGTGTATACGAAGCTAATAGAAACTG 57.148 34.615 0.00 0.00 0.00 3.16
1900 4592 7.096884 TGAAGACTGTGTATACGAAGCTAAT 57.903 36.000 0.00 0.00 0.00 1.73
1905 4597 8.235226 TCTAGTTTGAAGACTGTGTATACGAAG 58.765 37.037 0.00 0.90 0.00 3.79
1908 4600 7.749808 TCTCTAGTTTGAAGACTGTGTATACG 58.250 38.462 0.00 0.00 0.00 3.06
1916 4608 8.715191 AAGCATAATCTCTAGTTTGAAGACTG 57.285 34.615 0.00 0.00 0.00 3.51
1998 4691 1.375908 GCTGGCGTGGAACTCATCA 60.376 57.895 0.00 0.00 31.75 3.07
2028 4721 2.010145 TCAGCTTCTCGTATGGCAAC 57.990 50.000 0.00 0.00 0.00 4.17
2069 4762 2.101770 GCATCGAAAGCAGCAGGC 59.898 61.111 8.19 0.00 45.30 4.85
2112 4805 4.404715 CAGAAGGATTTTGATGCAGGGAAT 59.595 41.667 0.00 0.00 0.00 3.01
2113 4806 3.765511 CAGAAGGATTTTGATGCAGGGAA 59.234 43.478 0.00 0.00 0.00 3.97
2114 4807 3.010472 TCAGAAGGATTTTGATGCAGGGA 59.990 43.478 0.00 0.00 0.00 4.20
2117 4810 8.630917 AGAAATATCAGAAGGATTTTGATGCAG 58.369 33.333 5.95 0.00 37.44 4.41
2124 4817 7.093640 TGCAGCAAGAAATATCAGAAGGATTTT 60.094 33.333 0.00 0.00 37.44 1.82
2155 4853 1.474332 TAACTGTCGCCGACCCCTTT 61.474 55.000 15.60 5.01 0.00 3.11
2164 4862 0.521291 TGCAGCAATTAACTGTCGCC 59.479 50.000 0.00 0.00 37.47 5.54
2213 4914 1.604278 GGACAAGAAACTGTCACTGCC 59.396 52.381 6.12 0.00 46.31 4.85
2227 4928 1.601759 CTGCAGTGGGTGGGACAAG 60.602 63.158 5.25 0.00 44.16 3.16
2236 4937 2.684881 GTTGGTGAATATCTGCAGTGGG 59.315 50.000 14.67 0.00 0.00 4.61
2375 5076 2.203126 CCTCTTGCCGGAGCCATC 60.203 66.667 5.05 0.00 38.69 3.51
2376 5077 3.801997 CCCTCTTGCCGGAGCCAT 61.802 66.667 5.05 0.00 38.69 4.40
2378 5079 4.475135 GACCCTCTTGCCGGAGCC 62.475 72.222 5.05 0.00 38.69 4.70
2379 5080 4.475135 GGACCCTCTTGCCGGAGC 62.475 72.222 5.05 0.00 40.48 4.70
2380 5081 2.685380 AGGACCCTCTTGCCGGAG 60.685 66.667 5.05 0.00 0.00 4.63
2381 5082 3.003173 CAGGACCCTCTTGCCGGA 61.003 66.667 5.05 0.00 0.00 5.14
2382 5083 3.322466 ACAGGACCCTCTTGCCGG 61.322 66.667 0.00 0.00 0.00 6.13
2383 5084 2.046892 CACAGGACCCTCTTGCCG 60.047 66.667 0.00 0.00 0.00 5.69
2484 5185 1.686325 CCGACGAGGGAATCCATGGT 61.686 60.000 12.58 0.25 35.97 3.55
2503 5204 0.671781 AGTTGTGCGGTGATGAGAGC 60.672 55.000 0.00 0.00 0.00 4.09
2518 5219 2.732094 GCCGCAGCTTTGCAGTTG 60.732 61.111 0.00 0.00 34.41 3.16
2568 5269 0.040067 CCAAAGGCAGTTTCGTCAGC 60.040 55.000 0.00 0.00 0.00 4.26
2587 5288 0.582005 GTCGAAGAACACCTGCACAC 59.418 55.000 0.00 0.00 39.69 3.82
2589 5290 0.596600 TCGTCGAAGAACACCTGCAC 60.597 55.000 0.00 0.00 39.69 4.57
2706 5407 0.961753 TTCGCTCAGCTTCTGACAGA 59.038 50.000 0.00 0.00 35.39 3.41
2716 5417 1.204312 GACCGTTTGTTCGCTCAGC 59.796 57.895 0.00 0.00 0.00 4.26
2732 5442 1.873591 ACCTGCACAATCGTTTCAGAC 59.126 47.619 0.00 0.00 0.00 3.51
2923 5642 4.201724 GCGGACGAAGCATATTAATCATCC 60.202 45.833 0.00 0.00 34.19 3.51
2951 5670 5.374453 CCCCCTTTTCCCCTGTTAATATAGA 59.626 44.000 0.00 0.00 0.00 1.98
2964 5686 1.076014 TTCGCTTCCCCCTTTTCCC 59.924 57.895 0.00 0.00 0.00 3.97
2965 5687 1.583495 CGTTCGCTTCCCCCTTTTCC 61.583 60.000 0.00 0.00 0.00 3.13
2966 5688 1.583495 CCGTTCGCTTCCCCCTTTTC 61.583 60.000 0.00 0.00 0.00 2.29
3012 5734 2.176045 TCATGGTCGAGTACACCACAT 58.824 47.619 5.73 0.00 46.90 3.21
3014 5736 2.481449 GGATCATGGTCGAGTACACCAC 60.481 54.545 5.73 0.00 46.90 4.16
3044 5766 0.855349 CGCCTACGCATTCATCAGTC 59.145 55.000 0.00 0.00 34.03 3.51
3062 5791 0.110238 GCACACCTGTACATGCAACG 60.110 55.000 13.07 0.00 38.00 4.10
3063 5792 1.238439 AGCACACCTGTACATGCAAC 58.762 50.000 18.64 0.00 40.63 4.17
3067 5796 3.433274 CACAAGTAGCACACCTGTACATG 59.567 47.826 0.00 0.00 29.71 3.21
3080 5809 5.403766 CCGATCATATCAGTTCACAAGTAGC 59.596 44.000 0.00 0.00 0.00 3.58
3104 5833 4.567959 ACGGTGCTTATTATTACGGTGTTC 59.432 41.667 0.00 0.00 0.00 3.18
3143 5872 2.026542 AGTGCTTCCATCTGAATGAGCA 60.027 45.455 0.00 0.00 39.26 4.26
3163 5892 1.139163 GGCACGTGCAATTTTTCCAG 58.861 50.000 38.60 0.00 44.36 3.86
3246 5980 6.002082 ACTTGGGTTATGTTTGAGGTACTTC 58.998 40.000 0.00 0.00 41.55 3.01
3265 5999 7.548075 ACAACGAACCTCTACAATATAACTTGG 59.452 37.037 0.00 0.00 0.00 3.61
3266 6000 8.475331 ACAACGAACCTCTACAATATAACTTG 57.525 34.615 0.00 0.00 0.00 3.16
3269 6003 8.470040 TCAACAACGAACCTCTACAATATAAC 57.530 34.615 0.00 0.00 0.00 1.89
3346 6080 4.016444 GGACCCAGAAATTAGTCATTGCA 58.984 43.478 0.00 0.00 0.00 4.08
3563 8992 3.906720 AGTTGGTATGCGAGTGGTATT 57.093 42.857 0.00 0.00 0.00 1.89
3565 8994 4.888823 TGTATAGTTGGTATGCGAGTGGTA 59.111 41.667 0.00 0.00 0.00 3.25
3568 8997 7.368059 TCTATTGTATAGTTGGTATGCGAGTG 58.632 38.462 0.00 0.00 0.00 3.51
3574 9003 9.197694 GTGAGCTTCTATTGTATAGTTGGTATG 57.802 37.037 0.00 0.00 0.00 2.39
3576 9005 8.195436 GTGTGAGCTTCTATTGTATAGTTGGTA 58.805 37.037 0.00 0.00 0.00 3.25
3596 9025 0.948623 TTCATGTTCGCCGGTGTGAG 60.949 55.000 16.01 2.29 31.46 3.51
3612 9041 8.539770 TTGCTTTGTTCATGTTTTTAGTTTCA 57.460 26.923 0.00 0.00 0.00 2.69
3628 9057 6.818142 AGTGCTTCATTTAACTTTGCTTTGTT 59.182 30.769 0.00 0.00 0.00 2.83
3640 9069 8.028938 GCTCCTTTGATTTAGTGCTTCATTTAA 58.971 33.333 0.00 0.00 0.00 1.52
3668 9097 3.059325 GTGCTCATTGCTAGGATAAAGCG 60.059 47.826 7.44 0.00 43.11 4.68
3705 9134 0.905357 ACCTTCCCCGATCACAGAAG 59.095 55.000 8.09 8.09 36.35 2.85
3706 9135 0.902531 GACCTTCCCCGATCACAGAA 59.097 55.000 0.00 0.00 0.00 3.02
3707 9136 0.252057 TGACCTTCCCCGATCACAGA 60.252 55.000 0.00 0.00 0.00 3.41
3708 9137 0.833287 ATGACCTTCCCCGATCACAG 59.167 55.000 0.00 0.00 0.00 3.66
3709 9138 1.285280 AATGACCTTCCCCGATCACA 58.715 50.000 0.00 0.00 0.00 3.58
3710 9139 2.420058 AAATGACCTTCCCCGATCAC 57.580 50.000 0.00 0.00 0.00 3.06
3711 9140 4.577988 TTTAAATGACCTTCCCCGATCA 57.422 40.909 0.00 0.00 0.00 2.92
3712 9141 5.184287 TGTTTTTAAATGACCTTCCCCGATC 59.816 40.000 0.00 0.00 0.00 3.69
3713 9142 5.047590 GTGTTTTTAAATGACCTTCCCCGAT 60.048 40.000 0.00 0.00 0.00 4.18
3714 9143 4.278919 GTGTTTTTAAATGACCTTCCCCGA 59.721 41.667 0.00 0.00 0.00 5.14
3715 9144 4.279922 AGTGTTTTTAAATGACCTTCCCCG 59.720 41.667 0.00 0.00 0.00 5.73
3716 9145 5.801531 AGTGTTTTTAAATGACCTTCCCC 57.198 39.130 0.00 0.00 0.00 4.81
3717 9146 7.754851 TCTAGTGTTTTTAAATGACCTTCCC 57.245 36.000 0.00 0.00 0.00 3.97
3718 9147 8.175716 CGATCTAGTGTTTTTAAATGACCTTCC 58.824 37.037 0.00 0.00 0.00 3.46
3719 9148 8.175716 CCGATCTAGTGTTTTTAAATGACCTTC 58.824 37.037 0.00 0.00 0.00 3.46
3720 9149 7.361799 GCCGATCTAGTGTTTTTAAATGACCTT 60.362 37.037 0.00 0.00 0.00 3.50
3721 9150 6.093633 GCCGATCTAGTGTTTTTAAATGACCT 59.906 38.462 0.00 0.00 0.00 3.85
3722 9151 6.255950 GCCGATCTAGTGTTTTTAAATGACC 58.744 40.000 0.00 0.00 0.00 4.02
3723 9152 6.255950 GGCCGATCTAGTGTTTTTAAATGAC 58.744 40.000 0.00 0.00 0.00 3.06
3724 9153 5.355910 GGGCCGATCTAGTGTTTTTAAATGA 59.644 40.000 0.00 0.00 0.00 2.57
3725 9154 5.124776 TGGGCCGATCTAGTGTTTTTAAATG 59.875 40.000 0.00 0.00 0.00 2.32
3726 9155 5.258051 TGGGCCGATCTAGTGTTTTTAAAT 58.742 37.500 0.00 0.00 0.00 1.40
3727 9156 4.653868 TGGGCCGATCTAGTGTTTTTAAA 58.346 39.130 0.00 0.00 0.00 1.52
3728 9157 4.289238 TGGGCCGATCTAGTGTTTTTAA 57.711 40.909 0.00 0.00 0.00 1.52
3729 9158 3.985019 TGGGCCGATCTAGTGTTTTTA 57.015 42.857 0.00 0.00 0.00 1.52
3730 9159 2.871096 TGGGCCGATCTAGTGTTTTT 57.129 45.000 0.00 0.00 0.00 1.94
3731 9160 3.366052 AATGGGCCGATCTAGTGTTTT 57.634 42.857 0.00 0.00 0.00 2.43
3732 9161 3.366052 AAATGGGCCGATCTAGTGTTT 57.634 42.857 0.00 0.00 0.00 2.83
3733 9162 3.366052 AAAATGGGCCGATCTAGTGTT 57.634 42.857 0.00 0.00 0.00 3.32
3734 9163 3.016736 CAAAAATGGGCCGATCTAGTGT 58.983 45.455 0.00 0.00 0.00 3.55
3735 9164 3.016736 ACAAAAATGGGCCGATCTAGTG 58.983 45.455 0.00 0.12 0.00 2.74
3736 9165 3.366052 ACAAAAATGGGCCGATCTAGT 57.634 42.857 0.00 0.00 0.00 2.57
3737 9166 3.694072 TCAACAAAAATGGGCCGATCTAG 59.306 43.478 0.00 0.00 0.00 2.43
3738 9167 3.691575 TCAACAAAAATGGGCCGATCTA 58.308 40.909 0.00 0.00 0.00 1.98
3739 9168 2.524306 TCAACAAAAATGGGCCGATCT 58.476 42.857 0.00 0.00 0.00 2.75
3740 9169 3.056891 TCTTCAACAAAAATGGGCCGATC 60.057 43.478 0.00 0.00 0.00 3.69
3741 9170 2.896685 TCTTCAACAAAAATGGGCCGAT 59.103 40.909 0.00 0.00 0.00 4.18
3742 9171 2.311463 TCTTCAACAAAAATGGGCCGA 58.689 42.857 0.00 0.00 0.00 5.54
3743 9172 2.810439 TCTTCAACAAAAATGGGCCG 57.190 45.000 0.00 0.00 0.00 6.13
3744 9173 5.826601 TTTTTCTTCAACAAAAATGGGCC 57.173 34.783 0.00 0.00 29.66 5.80
3777 9206 2.286831 GCTTGATTGATCAGTGATGCCG 60.287 50.000 11.20 0.00 38.19 5.69
3779 9208 2.686405 TGGCTTGATTGATCAGTGATGC 59.314 45.455 11.20 5.58 38.19 3.91
3823 9253 2.092429 CCTACATTTTGGGGCTCAGCTA 60.092 50.000 0.00 0.00 0.00 3.32
3829 9259 3.635591 CATCTTCCTACATTTTGGGGCT 58.364 45.455 0.00 0.00 0.00 5.19
3831 9261 2.695147 GGCATCTTCCTACATTTTGGGG 59.305 50.000 0.00 0.00 0.00 4.96
3833 9263 5.603170 AATGGCATCTTCCTACATTTTGG 57.397 39.130 0.00 0.00 0.00 3.28
3834 9264 6.040166 AGCTAATGGCATCTTCCTACATTTTG 59.960 38.462 0.00 0.00 44.79 2.44
3835 9265 6.131961 AGCTAATGGCATCTTCCTACATTTT 58.868 36.000 0.00 0.00 44.79 1.82
3836 9266 5.699143 AGCTAATGGCATCTTCCTACATTT 58.301 37.500 0.00 0.00 44.79 2.32
3837 9267 5.316158 AGCTAATGGCATCTTCCTACATT 57.684 39.130 0.00 0.00 44.79 2.71
3851 9281 3.282885 GACCCCTTCTTCAAGCTAATGG 58.717 50.000 0.00 0.00 0.00 3.16
3882 9312 1.201921 CGACGTATTCCTTGCAAGTGC 60.202 52.381 24.35 9.37 42.50 4.40
3884 9314 2.450609 ACGACGTATTCCTTGCAAGT 57.549 45.000 24.35 9.39 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.