Multiple sequence alignment - TraesCS2A01G153200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G153200 chr2A 100.000 4704 0 0 1 4704 101371023 101375726 0.000000e+00 8687.0
1 TraesCS2A01G153200 chr2A 100.000 652 0 0 5052 5703 101376074 101376725 0.000000e+00 1205.0
2 TraesCS2A01G153200 chr2A 94.074 135 8 0 1172 1306 108013494 108013360 7.490000e-49 206.0
3 TraesCS2A01G153200 chr2A 93.939 132 7 1 1172 1303 109574982 109575112 1.250000e-46 198.0
4 TraesCS2A01G153200 chr2A 90.909 55 5 0 5342 5396 778161676 778161730 2.200000e-09 75.0
5 TraesCS2A01G153200 chr2B 91.230 4470 216 65 303 4704 153579496 153583857 0.000000e+00 5921.0
6 TraesCS2A01G153200 chr2B 85.771 253 33 3 10 261 153579297 153579547 1.220000e-66 265.0
7 TraesCS2A01G153200 chr2B 83.113 302 15 12 5411 5691 153584599 153584885 5.710000e-60 243.0
8 TraesCS2A01G153200 chr2B 94.074 135 8 0 1172 1306 160669455 160669321 7.490000e-49 206.0
9 TraesCS2A01G153200 chr2B 92.593 135 10 0 1172 1306 160411599 160411465 1.620000e-45 195.0
10 TraesCS2A01G153200 chr2B 91.852 135 11 0 1172 1306 160705818 160705684 7.540000e-44 189.0
11 TraesCS2A01G153200 chr2D 93.712 827 28 12 884 1698 102269553 102270367 0.000000e+00 1218.0
12 TraesCS2A01G153200 chr2D 94.948 772 27 7 1703 2471 102270472 102271234 0.000000e+00 1199.0
13 TraesCS2A01G153200 chr2D 85.262 1011 76 31 3168 4149 102271995 102272961 0.000000e+00 974.0
14 TraesCS2A01G153200 chr2D 89.626 588 52 5 244 830 102268965 102269544 0.000000e+00 739.0
15 TraesCS2A01G153200 chr2D 85.895 553 66 8 2659 3205 102271368 102271914 3.830000e-161 579.0
16 TraesCS2A01G153200 chr2D 92.727 385 26 2 1 385 102268601 102268983 6.460000e-154 555.0
17 TraesCS2A01G153200 chr2D 90.635 299 27 1 4399 4696 102273244 102273542 4.140000e-106 396.0
18 TraesCS2A01G153200 chr2D 94.309 123 7 0 1184 1306 110950312 110950190 7.540000e-44 189.0
19 TraesCS2A01G153200 chr2D 84.247 146 20 3 241 385 102268901 102269044 7.710000e-29 139.0
20 TraesCS2A01G153200 chr3D 85.185 324 47 1 299 622 37438633 37438955 1.180000e-86 331.0
21 TraesCS2A01G153200 chr5B 86.875 160 16 4 1144 1298 679559866 679559707 2.110000e-39 174.0
22 TraesCS2A01G153200 chr3A 77.617 277 34 16 519 767 47588440 47588164 5.960000e-30 143.0
23 TraesCS2A01G153200 chr3A 97.297 37 0 1 1636 1671 539899 539935 1.720000e-05 62.1
24 TraesCS2A01G153200 chr6A 93.878 49 3 0 1631 1679 587559977 587560025 2.200000e-09 75.0
25 TraesCS2A01G153200 chr5A 76.471 153 25 9 1614 1765 556117751 556117609 7.930000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G153200 chr2A 101371023 101376725 5702 False 4946.000 8687 100.000000 1 5703 2 chr2A.!!$F3 5702
1 TraesCS2A01G153200 chr2B 153579297 153584885 5588 False 2143.000 5921 86.704667 10 5691 3 chr2B.!!$F1 5681
2 TraesCS2A01G153200 chr2D 102268601 102273542 4941 False 724.875 1218 89.631500 1 4696 8 chr2D.!!$F1 4695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.321919 GATGCTCCACTGAAGCACCA 60.322 55.0 0.0 0.0 41.61 4.17 F
680 803 0.596083 GCGCTGCATCTCGTACAGAT 60.596 55.0 0.0 0.0 43.33 2.90 F
1166 1307 0.396435 CCAAAACCAAGAAAGGGGGC 59.604 55.0 0.0 0.0 0.00 5.80 F
2732 2996 0.251165 CCCCAGGTAAACACACCCTG 60.251 60.0 0.0 0.0 44.39 4.45 F
4334 4811 0.320771 AGTGTGACCTTGATGTCCGC 60.321 55.0 0.0 0.0 34.25 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 1307 0.179189 GTTCGCCTCAGCCATTTTCG 60.179 55.000 0.00 0.0 34.57 3.46 R
2058 2306 1.000843 GGCATGGGTTTGACAAAGGTC 59.999 52.381 0.00 0.0 44.57 3.85 R
3064 3335 0.387239 GATTTGCCCGTGTCAGTTGC 60.387 55.000 0.00 0.0 0.00 4.17 R
4468 4965 0.177604 CCAGGAGCCTGCAGAGTTAG 59.822 60.000 17.39 0.0 42.35 2.34 R
5174 5672 0.106708 ATAGTCCACATTGCGGCGAT 59.893 50.000 12.98 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.174783 AGATCAACCGCGTGACTAGT 58.825 50.000 4.92 0.00 0.00 2.57
23 24 1.081641 AACCGCGTGACTAGTCGTG 60.082 57.895 17.85 13.52 37.32 4.35
99 100 3.054503 CTCTGGCTGGCAGTGCAC 61.055 66.667 27.51 9.40 0.00 4.57
102 103 3.881952 CTGGCTGGCAGTGCACGTA 62.882 63.158 21.84 0.00 0.00 3.57
111 112 1.676014 GCAGTGCACGTATTCCTCCTT 60.676 52.381 11.09 0.00 0.00 3.36
126 127 1.469308 CTCCTTACTCGTCGAAGCAGT 59.531 52.381 0.00 1.49 0.00 4.40
133 134 0.393402 TCGTCGAAGCAGTAGCCCTA 60.393 55.000 0.00 0.00 43.56 3.53
139 140 3.190744 TCGAAGCAGTAGCCCTAATATCG 59.809 47.826 0.00 0.00 43.56 2.92
237 238 4.314440 AAGCACCTCCGCGCTTCA 62.314 61.111 5.56 0.00 45.10 3.02
238 239 4.749310 AGCACCTCCGCGCTTCAG 62.749 66.667 5.56 0.00 33.81 3.02
260 261 2.083774 GATGCTCCATTGAAACACCGA 58.916 47.619 0.00 0.00 0.00 4.69
263 264 1.790755 CTCCATTGAAACACCGACGA 58.209 50.000 0.00 0.00 0.00 4.20
273 274 1.996292 ACACCGACGACTTGATGATG 58.004 50.000 0.00 0.00 0.00 3.07
275 276 2.288825 ACACCGACGACTTGATGATGTT 60.289 45.455 0.00 0.00 0.00 2.71
276 277 2.736721 CACCGACGACTTGATGATGTTT 59.263 45.455 0.00 0.00 0.00 2.83
278 279 3.186409 ACCGACGACTTGATGATGTTTTG 59.814 43.478 0.00 0.00 0.00 2.44
279 280 3.186409 CCGACGACTTGATGATGTTTTGT 59.814 43.478 0.00 0.00 0.00 2.83
280 281 4.319477 CCGACGACTTGATGATGTTTTGTT 60.319 41.667 0.00 0.00 0.00 2.83
281 282 4.608470 CGACGACTTGATGATGTTTTGTTG 59.392 41.667 0.00 0.00 0.00 3.33
282 283 4.290155 ACGACTTGATGATGTTTTGTTGC 58.710 39.130 0.00 0.00 0.00 4.17
283 284 3.358700 CGACTTGATGATGTTTTGTTGCG 59.641 43.478 0.00 0.00 0.00 4.85
321 322 0.321919 GATGCTCCACTGAAGCACCA 60.322 55.000 0.00 0.00 41.61 4.17
383 506 2.361104 GCCCCATTGAAGCACCGA 60.361 61.111 0.00 0.00 0.00 4.69
503 626 1.315257 GCCGAGCAACACCATGGATT 61.315 55.000 21.47 9.59 0.00 3.01
505 628 0.734889 CGAGCAACACCATGGATTCC 59.265 55.000 21.47 2.20 0.00 3.01
508 631 1.329913 GCAACACCATGGATTCCCCC 61.330 60.000 21.47 0.00 0.00 5.40
529 652 4.508124 CCCTTGCAGTATAGTCGTCAATTC 59.492 45.833 0.00 0.00 0.00 2.17
541 664 2.576191 TCGTCAATTCTCCCCCAATCTT 59.424 45.455 0.00 0.00 0.00 2.40
623 746 0.918310 AGAAGAGGAAGGCCAGGCAT 60.918 55.000 15.19 1.92 36.29 4.40
624 747 0.750911 GAAGAGGAAGGCCAGGCATG 60.751 60.000 15.19 0.00 36.29 4.06
680 803 0.596083 GCGCTGCATCTCGTACAGAT 60.596 55.000 0.00 0.00 43.33 2.90
692 815 6.347270 TCTCGTACAGATAAGAGAGAAACG 57.653 41.667 0.00 0.00 39.93 3.60
803 926 5.105997 CCAGAGAAATCAGTTGGTTGAATCC 60.106 44.000 0.00 0.00 0.00 3.01
842 965 6.582677 TTTAGTGGGGTATTTTGTGACATG 57.417 37.500 0.00 0.00 0.00 3.21
848 971 7.453126 AGTGGGGTATTTTGTGACATGAAATTA 59.547 33.333 0.00 0.00 0.00 1.40
911 1035 3.622166 AATACCGTGTGAAACTAGGGG 57.378 47.619 0.00 0.00 38.16 4.79
913 1037 2.014010 ACCGTGTGAAACTAGGGGTA 57.986 50.000 0.00 0.00 38.16 3.69
914 1038 1.897802 ACCGTGTGAAACTAGGGGTAG 59.102 52.381 0.00 0.00 38.16 3.18
915 1039 2.173519 CCGTGTGAAACTAGGGGTAGA 58.826 52.381 0.00 0.00 38.04 2.59
1093 1232 1.592223 CTCGTTCCCCACTCTGGAC 59.408 63.158 0.00 0.00 40.96 4.02
1166 1307 0.396435 CCAAAACCAAGAAAGGGGGC 59.604 55.000 0.00 0.00 0.00 5.80
1179 1320 2.418083 GGGGGCGAAAATGGCTGAG 61.418 63.158 0.00 0.00 34.31 3.35
1357 1498 2.224378 TGCTCCTGTCTGTCTTCCTTTG 60.224 50.000 0.00 0.00 0.00 2.77
1364 1505 4.191544 TGTCTGTCTTCCTTTGTTGAGTG 58.808 43.478 0.00 0.00 0.00 3.51
1538 1679 6.037391 CCCGTAGCCGAATTAGTTCAAAATAA 59.963 38.462 0.00 0.00 35.63 1.40
1539 1680 7.123830 CCGTAGCCGAATTAGTTCAAAATAAG 58.876 38.462 0.00 0.00 35.63 1.73
1541 1682 8.548721 CGTAGCCGAATTAGTTCAAAATAAGAT 58.451 33.333 0.00 0.00 35.63 2.40
1542 1683 9.865484 GTAGCCGAATTAGTTCAAAATAAGATC 57.135 33.333 0.00 0.00 33.86 2.75
1543 1684 8.738645 AGCCGAATTAGTTCAAAATAAGATCT 57.261 30.769 0.00 0.00 33.86 2.75
1544 1685 9.832445 AGCCGAATTAGTTCAAAATAAGATCTA 57.168 29.630 0.00 0.00 33.86 1.98
1591 1738 6.238648 ACCCTAAGTCAAGTCAAACTTATGG 58.761 40.000 12.27 12.27 43.62 2.74
1883 2131 1.202879 CCACTTAAGGCACTCCACCAA 60.203 52.381 7.53 0.00 38.49 3.67
1916 2164 3.386932 TCTCCCAAGGATCCCATTTTG 57.613 47.619 8.55 6.30 0.00 2.44
2058 2306 2.553727 GCTAGGCTCCGACTACCCG 61.554 68.421 0.00 0.00 0.00 5.28
2079 2327 1.047002 CCTTTGTCAAACCCATGCCA 58.953 50.000 0.00 0.00 0.00 4.92
2268 2526 3.442076 GAGGAGGAGGAGTTTAAGGTGA 58.558 50.000 0.00 0.00 0.00 4.02
2319 2577 2.281484 GGTGGAGCGAGTTTGCCA 60.281 61.111 0.00 0.00 34.65 4.92
2398 2656 6.549952 CATTGTTCAAGGTGAGATTCTTAGC 58.450 40.000 0.00 0.00 0.00 3.09
2507 2766 8.737601 TTGGGGGTTTATGGTATTTTTCTTTA 57.262 30.769 0.00 0.00 0.00 1.85
2508 2767 8.919018 TGGGGGTTTATGGTATTTTTCTTTAT 57.081 30.769 0.00 0.00 0.00 1.40
2509 2768 9.340223 TGGGGGTTTATGGTATTTTTCTTTATT 57.660 29.630 0.00 0.00 0.00 1.40
2531 2790 2.035961 TCCCAAGCACGTATCTAGATGC 59.964 50.000 15.79 13.06 38.39 3.91
2546 2810 7.677454 ATCTAGATGCGCATCATTTTCATAA 57.323 32.000 42.35 21.66 40.22 1.90
2549 2813 6.570672 AGATGCGCATCATTTTCATAAGAT 57.429 33.333 42.35 20.84 40.22 2.40
2591 2855 2.940410 AGTCCTTTTCGAGAAAACGCAA 59.060 40.909 6.89 0.00 35.57 4.85
2732 2996 0.251165 CCCCAGGTAAACACACCCTG 60.251 60.000 0.00 0.00 44.39 4.45
2788 3055 3.364549 CCTCCTTGATCTGACTCAGTCT 58.635 50.000 6.33 0.00 33.15 3.24
2833 3100 7.411480 GCAACCTACAAAACAAAACAAGAACTC 60.411 37.037 0.00 0.00 0.00 3.01
2893 3163 6.169094 ACACTGTCTAGATCAAACATGAAGG 58.831 40.000 0.00 0.00 0.00 3.46
2969 3240 0.541764 TTGGCCTTGATGTTGGGGAC 60.542 55.000 3.32 0.00 0.00 4.46
3045 3316 6.186234 TGGTGAAACATGTCATTGATGGATA 58.814 36.000 0.00 0.00 39.98 2.59
3060 3331 6.364568 TGATGGATAATCGTGATGATCCTT 57.635 37.500 21.68 17.11 45.46 3.36
3063 3334 4.347876 TGGATAATCGTGATGATCCTTGGT 59.652 41.667 21.68 0.00 45.46 3.67
3064 3335 4.692625 GGATAATCGTGATGATCCTTGGTG 59.307 45.833 16.21 0.00 43.01 4.17
3142 3413 1.356398 GGGAAAACTGGTCCACCCATA 59.644 52.381 9.23 0.00 44.15 2.74
3313 3703 4.982241 TCCCAAGCAGATATAGGAAAGG 57.018 45.455 0.00 0.00 0.00 3.11
3360 3750 1.681666 CTCTTGAGCCTGCCTTCCA 59.318 57.895 0.00 0.00 0.00 3.53
3540 3933 1.677552 CGGCAGGTACAGGGTTCTT 59.322 57.895 0.00 0.00 0.00 2.52
3568 3961 2.437413 GTCTCCATTGGTTGAAGTCCC 58.563 52.381 1.86 0.00 0.00 4.46
3589 3982 6.637658 GTCCCGAATTCGATGTTTAACAAAAA 59.362 34.615 28.76 0.00 43.02 1.94
3591 3984 6.398101 CCCGAATTCGATGTTTAACAAAAACG 60.398 38.462 28.76 5.70 43.02 3.60
3598 3991 5.277634 CGATGTTTAACAAAAACGAGTCCCT 60.278 40.000 0.66 0.00 33.05 4.20
3642 4036 1.886542 GGGCCAAGTTCACTTAACAGG 59.113 52.381 4.39 0.00 40.83 4.00
3697 4091 5.067674 CCAAACTGAACTGTGATGAAGGAAA 59.932 40.000 0.00 0.00 0.00 3.13
3698 4092 5.757850 AACTGAACTGTGATGAAGGAAAC 57.242 39.130 0.00 0.00 0.00 2.78
3699 4093 4.780815 ACTGAACTGTGATGAAGGAAACA 58.219 39.130 0.00 0.00 0.00 2.83
3739 4149 4.475763 ACTGAGCAGTATCGTAGATTCG 57.524 45.455 0.41 0.00 40.43 3.34
3874 4285 5.748592 ACGTTCTGCTAACTTTGTGAAATC 58.251 37.500 0.00 0.00 0.00 2.17
3879 4290 3.188460 TGCTAACTTTGTGAAATCGGAGC 59.812 43.478 0.00 0.00 0.00 4.70
3881 4292 4.142600 GCTAACTTTGTGAAATCGGAGCAT 60.143 41.667 0.00 0.00 0.00 3.79
3977 4389 2.960819 AGGAATATACTGAATCGCGGC 58.039 47.619 6.13 0.00 0.00 6.53
4180 4615 7.327518 CGTTAATTTGTTTCCCTTGTATCAACC 59.672 37.037 0.00 0.00 0.00 3.77
4182 4617 9.589461 TTAATTTGTTTCCCTTGTATCAACCTA 57.411 29.630 0.00 0.00 0.00 3.08
4243 4689 5.858381 TCCCATATCATCTAAGCTGTGTTC 58.142 41.667 0.00 0.00 0.00 3.18
4286 4747 9.388506 GATTTTATTGATCTCTTGACCTCTTCA 57.611 33.333 0.00 0.00 0.00 3.02
4329 4806 4.898829 TTGTTTGAGTGTGACCTTGATG 57.101 40.909 0.00 0.00 0.00 3.07
4334 4811 0.320771 AGTGTGACCTTGATGTCCGC 60.321 55.000 0.00 0.00 34.25 5.54
4427 4924 5.276440 AGTGATTCAGATCTACCCTCAACT 58.724 41.667 0.00 0.00 33.28 3.16
4431 4928 6.213397 TGATTCAGATCTACCCTCAACTGAAA 59.787 38.462 0.00 0.00 43.85 2.69
4436 4933 1.702957 CTACCCTCAACTGAAACCCCA 59.297 52.381 0.00 0.00 0.00 4.96
4442 4939 3.023832 CTCAACTGAAACCCCAACAAGT 58.976 45.455 0.00 0.00 0.00 3.16
4445 4942 3.885724 ACTGAAACCCCAACAAGTTTG 57.114 42.857 0.00 0.00 36.36 2.93
4463 4960 5.232463 AGTTTGCAAATGGCTAATGTTCTG 58.768 37.500 16.21 0.00 45.15 3.02
4465 4962 5.465532 TTGCAAATGGCTAATGTTCTGAA 57.534 34.783 0.00 0.00 45.15 3.02
4468 4965 6.101332 TGCAAATGGCTAATGTTCTGAATTC 58.899 36.000 0.00 0.00 45.15 2.17
4474 4972 7.849804 TGGCTAATGTTCTGAATTCTAACTC 57.150 36.000 18.72 4.44 0.00 3.01
4505 5003 3.551454 CCTGGTTGCTTCATGTCAACTTG 60.551 47.826 19.42 14.53 41.53 3.16
4507 5005 3.181488 TGGTTGCTTCATGTCAACTTGTG 60.181 43.478 19.42 0.00 41.53 3.33
4540 5038 5.447010 GCACAGTTCAGAAATCTGCACTATC 60.447 44.000 13.97 4.73 46.04 2.08
4545 5043 4.691175 TCAGAAATCTGCACTATCTCAGC 58.309 43.478 5.53 0.00 43.46 4.26
4567 5065 5.011738 AGCGGTTAGTTATGTATGTATGGCT 59.988 40.000 0.00 0.00 0.00 4.75
4621 5119 3.671008 TGCAAGTCGTATGGTAACTGT 57.329 42.857 0.00 0.00 37.61 3.55
4646 5144 4.622740 GGCATCTTGTAAAGTTTGTCATGC 59.377 41.667 0.00 5.11 46.34 4.06
4696 5194 5.792188 TGATACCCATCATGGTTGATATCCT 59.208 40.000 2.07 0.00 40.70 3.24
5068 5566 3.758172 GCGGGTGTCCAAATGTGT 58.242 55.556 0.00 0.00 0.00 3.72
5069 5567 2.935505 GCGGGTGTCCAAATGTGTA 58.064 52.632 0.00 0.00 0.00 2.90
5071 5569 1.199097 GCGGGTGTCCAAATGTGTAAG 59.801 52.381 0.00 0.00 0.00 2.34
5072 5570 1.810151 CGGGTGTCCAAATGTGTAAGG 59.190 52.381 0.00 0.00 0.00 2.69
5073 5571 2.812613 CGGGTGTCCAAATGTGTAAGGT 60.813 50.000 0.00 0.00 0.00 3.50
5075 5573 3.639561 GGGTGTCCAAATGTGTAAGGTTT 59.360 43.478 0.00 0.00 0.00 3.27
5076 5574 4.100344 GGGTGTCCAAATGTGTAAGGTTTT 59.900 41.667 0.00 0.00 0.00 2.43
5077 5575 5.302313 GGGTGTCCAAATGTGTAAGGTTTTA 59.698 40.000 0.00 0.00 0.00 1.52
5078 5576 6.014925 GGGTGTCCAAATGTGTAAGGTTTTAT 60.015 38.462 0.00 0.00 0.00 1.40
5079 5577 6.866248 GGTGTCCAAATGTGTAAGGTTTTATG 59.134 38.462 0.00 0.00 0.00 1.90
5081 5579 5.867174 GTCCAAATGTGTAAGGTTTTATGCC 59.133 40.000 0.00 0.00 0.00 4.40
5082 5580 4.862018 CCAAATGTGTAAGGTTTTATGCCG 59.138 41.667 0.00 0.00 0.00 5.69
5085 5583 3.488363 TGTGTAAGGTTTTATGCCGGTT 58.512 40.909 1.90 0.00 0.00 4.44
5087 5585 4.231439 GTGTAAGGTTTTATGCCGGTTTG 58.769 43.478 1.90 0.00 0.00 2.93
5088 5586 2.448926 AAGGTTTTATGCCGGTTTGC 57.551 45.000 1.90 0.00 0.00 3.68
5089 5587 0.242555 AGGTTTTATGCCGGTTTGCG 59.757 50.000 1.90 0.00 0.00 4.85
5090 5588 0.734597 GGTTTTATGCCGGTTTGCGG 60.735 55.000 1.90 0.00 0.00 5.69
5091 5589 0.734597 GTTTTATGCCGGTTTGCGGG 60.735 55.000 1.90 0.00 38.05 6.13
5092 5590 1.179814 TTTTATGCCGGTTTGCGGGT 61.180 50.000 1.90 0.00 37.41 5.28
5093 5591 0.322277 TTTATGCCGGTTTGCGGGTA 60.322 50.000 1.90 0.00 37.41 3.69
5094 5592 0.322277 TTATGCCGGTTTGCGGGTAA 60.322 50.000 1.90 0.00 37.41 2.85
5096 5594 1.179814 ATGCCGGTTTGCGGGTAAAA 61.180 50.000 1.90 0.00 37.41 1.52
5097 5595 1.372004 GCCGGTTTGCGGGTAAAAC 60.372 57.895 1.90 0.00 37.41 2.43
5103 5601 2.465855 GTTTGCGGGTAAAACCACTTG 58.534 47.619 0.00 0.00 41.02 3.16
5104 5602 2.054232 TTGCGGGTAAAACCACTTGA 57.946 45.000 0.00 0.00 41.02 3.02
5107 5605 1.471287 GCGGGTAAAACCACTTGATCC 59.529 52.381 0.00 0.00 41.02 3.36
5109 5607 3.150767 CGGGTAAAACCACTTGATCCAA 58.849 45.455 0.00 0.00 41.02 3.53
5110 5608 3.190535 CGGGTAAAACCACTTGATCCAAG 59.809 47.826 5.26 5.26 41.02 3.61
5111 5609 3.509967 GGGTAAAACCACTTGATCCAAGG 59.490 47.826 10.91 0.00 41.02 3.61
5113 5611 3.328535 AAAACCACTTGATCCAAGGGT 57.671 42.857 10.91 11.23 42.73 4.34
5114 5612 2.292828 AACCACTTGATCCAAGGGTG 57.707 50.000 15.50 7.73 42.73 4.61
5116 5614 1.780309 ACCACTTGATCCAAGGGTGAA 59.220 47.619 14.60 0.00 42.73 3.18
5119 5617 4.230502 ACCACTTGATCCAAGGGTGAATAT 59.769 41.667 14.60 0.00 42.73 1.28
5121 5619 6.103205 ACCACTTGATCCAAGGGTGAATATAT 59.897 38.462 14.60 0.00 42.73 0.86
5122 5620 7.294720 ACCACTTGATCCAAGGGTGAATATATA 59.705 37.037 14.60 0.00 42.73 0.86
5123 5621 8.163408 CCACTTGATCCAAGGGTGAATATATAA 58.837 37.037 10.91 0.00 42.73 0.98
5124 5622 9.224267 CACTTGATCCAAGGGTGAATATATAAG 57.776 37.037 10.91 0.00 44.81 1.73
5125 5623 8.386264 ACTTGATCCAAGGGTGAATATATAAGG 58.614 37.037 10.91 0.00 44.81 2.69
5126 5624 7.888514 TGATCCAAGGGTGAATATATAAGGT 57.111 36.000 0.00 0.00 0.00 3.50
5127 5625 8.287904 TGATCCAAGGGTGAATATATAAGGTT 57.712 34.615 0.00 0.00 0.00 3.50
5128 5626 8.732854 TGATCCAAGGGTGAATATATAAGGTTT 58.267 33.333 0.00 0.00 0.00 3.27
5129 5627 9.588096 GATCCAAGGGTGAATATATAAGGTTTT 57.412 33.333 0.00 0.00 0.00 2.43
5135 5633 9.822727 AGGGTGAATATATAAGGTTTTTATGGG 57.177 33.333 0.00 0.00 0.00 4.00
5136 5634 9.596308 GGGTGAATATATAAGGTTTTTATGGGT 57.404 33.333 0.00 0.00 0.00 4.51
5146 5644 6.464530 AGGTTTTTATGGGTTAGGAGACTT 57.535 37.500 0.00 0.00 43.67 3.01
5147 5645 7.578458 AGGTTTTTATGGGTTAGGAGACTTA 57.422 36.000 0.00 0.00 43.67 2.24
5149 5647 7.239143 AGGTTTTTATGGGTTAGGAGACTTAGT 59.761 37.037 0.00 0.00 43.67 2.24
5151 5649 9.948964 GTTTTTATGGGTTAGGAGACTTAGTTA 57.051 33.333 0.00 0.00 43.67 2.24
5156 5654 8.943594 ATGGGTTAGGAGACTTAGTTATAGAG 57.056 38.462 0.00 0.00 43.67 2.43
5157 5655 6.776603 TGGGTTAGGAGACTTAGTTATAGAGC 59.223 42.308 0.00 0.00 43.67 4.09
5159 5657 7.040271 GGGTTAGGAGACTTAGTTATAGAGCTG 60.040 44.444 0.00 0.00 43.67 4.24
5162 5660 7.817418 AGGAGACTTAGTTATAGAGCTGAAG 57.183 40.000 0.00 0.00 37.44 3.02
5163 5661 6.775629 AGGAGACTTAGTTATAGAGCTGAAGG 59.224 42.308 0.00 0.00 37.44 3.46
5164 5662 6.773685 GGAGACTTAGTTATAGAGCTGAAGGA 59.226 42.308 0.00 0.00 0.00 3.36
5165 5663 7.255346 GGAGACTTAGTTATAGAGCTGAAGGAC 60.255 44.444 0.00 0.00 0.00 3.85
5166 5664 6.261381 AGACTTAGTTATAGAGCTGAAGGACG 59.739 42.308 0.00 0.00 0.00 4.79
5167 5665 5.299782 ACTTAGTTATAGAGCTGAAGGACGG 59.700 44.000 0.00 0.00 0.00 4.79
5168 5666 3.899726 AGTTATAGAGCTGAAGGACGGA 58.100 45.455 0.00 0.00 0.00 4.69
5169 5667 4.279145 AGTTATAGAGCTGAAGGACGGAA 58.721 43.478 0.00 0.00 0.00 4.30
5171 5669 1.919240 TAGAGCTGAAGGACGGAACA 58.081 50.000 0.00 0.00 0.00 3.18
5173 5671 1.001406 AGAGCTGAAGGACGGAACAAG 59.999 52.381 0.00 0.00 0.00 3.16
5174 5672 1.000955 GAGCTGAAGGACGGAACAAGA 59.999 52.381 0.00 0.00 0.00 3.02
5176 5674 2.003301 GCTGAAGGACGGAACAAGATC 58.997 52.381 0.00 0.00 0.00 2.75
5177 5675 2.263077 CTGAAGGACGGAACAAGATCG 58.737 52.381 0.00 0.00 0.00 3.69
5178 5676 1.000145 GAAGGACGGAACAAGATCGC 59.000 55.000 0.00 0.00 0.00 4.58
5179 5677 0.391263 AAGGACGGAACAAGATCGCC 60.391 55.000 0.00 0.00 0.00 5.54
5182 5680 2.813474 CGGAACAAGATCGCCGCA 60.813 61.111 0.00 0.00 37.08 5.69
5187 5685 0.168788 AACAAGATCGCCGCAATGTG 59.831 50.000 0.00 0.00 0.00 3.21
5188 5686 1.063006 CAAGATCGCCGCAATGTGG 59.937 57.895 8.76 8.76 36.10 4.17
5189 5687 1.078497 AAGATCGCCGCAATGTGGA 60.078 52.632 18.19 0.00 34.74 4.02
5190 5688 1.369091 AAGATCGCCGCAATGTGGAC 61.369 55.000 18.19 7.09 34.74 4.02
5191 5689 1.815421 GATCGCCGCAATGTGGACT 60.815 57.895 18.19 0.00 34.74 3.85
5192 5690 0.529773 GATCGCCGCAATGTGGACTA 60.530 55.000 18.19 0.61 34.74 2.59
5193 5691 0.106708 ATCGCCGCAATGTGGACTAT 59.893 50.000 18.19 3.16 34.74 2.12
5194 5692 0.747852 TCGCCGCAATGTGGACTATA 59.252 50.000 18.19 0.00 34.74 1.31
5195 5693 1.343142 TCGCCGCAATGTGGACTATAT 59.657 47.619 18.19 0.00 34.74 0.86
5196 5694 2.559231 TCGCCGCAATGTGGACTATATA 59.441 45.455 18.19 0.00 34.74 0.86
5197 5695 2.923655 CGCCGCAATGTGGACTATATAG 59.076 50.000 18.19 8.27 34.74 1.31
5198 5696 3.262420 GCCGCAATGTGGACTATATAGG 58.738 50.000 18.19 0.00 34.74 2.57
5199 5697 3.056107 GCCGCAATGTGGACTATATAGGA 60.056 47.826 18.19 0.00 34.74 2.94
5200 5698 4.748892 CCGCAATGTGGACTATATAGGAG 58.251 47.826 7.10 0.00 34.74 3.69
5201 5699 4.462834 CCGCAATGTGGACTATATAGGAGA 59.537 45.833 7.10 0.00 34.74 3.71
5202 5700 5.403246 CGCAATGTGGACTATATAGGAGAC 58.597 45.833 14.25 7.36 0.00 3.36
5203 5701 5.622460 CGCAATGTGGACTATATAGGAGACC 60.622 48.000 14.25 11.26 0.00 3.85
5204 5702 5.246203 GCAATGTGGACTATATAGGAGACCA 59.754 44.000 14.25 13.34 36.58 4.02
5205 5703 6.239600 GCAATGTGGACTATATAGGAGACCAA 60.240 42.308 14.25 8.74 39.83 3.67
5206 5704 7.689313 GCAATGTGGACTATATAGGAGACCAAA 60.689 40.741 14.25 12.04 39.83 3.28
5207 5705 6.726490 TGTGGACTATATAGGAGACCAAAC 57.274 41.667 14.25 7.56 39.83 2.93
5208 5706 6.199376 TGTGGACTATATAGGAGACCAAACA 58.801 40.000 14.25 9.50 39.83 2.83
5209 5707 6.670464 TGTGGACTATATAGGAGACCAAACAA 59.330 38.462 14.25 3.40 39.83 2.83
5210 5708 7.181305 TGTGGACTATATAGGAGACCAAACAAA 59.819 37.037 14.25 1.55 39.83 2.83
5211 5709 8.044908 GTGGACTATATAGGAGACCAAACAAAA 58.955 37.037 14.25 0.00 39.83 2.44
5212 5710 8.044908 TGGACTATATAGGAGACCAAACAAAAC 58.955 37.037 14.25 0.00 36.10 2.43
5213 5711 8.265764 GGACTATATAGGAGACCAAACAAAACT 58.734 37.037 14.25 0.00 0.00 2.66
5214 5712 9.668497 GACTATATAGGAGACCAAACAAAACTT 57.332 33.333 14.25 0.00 0.00 2.66
5215 5713 9.449719 ACTATATAGGAGACCAAACAAAACTTG 57.550 33.333 14.25 0.00 0.00 3.16
5216 5714 9.667107 CTATATAGGAGACCAAACAAAACTTGA 57.333 33.333 1.40 0.00 0.00 3.02
5217 5715 4.983671 AGGAGACCAAACAAAACTTGAC 57.016 40.909 0.00 0.00 0.00 3.18
5218 5716 4.340617 AGGAGACCAAACAAAACTTGACA 58.659 39.130 0.00 0.00 0.00 3.58
5219 5717 4.956075 AGGAGACCAAACAAAACTTGACAT 59.044 37.500 0.00 0.00 0.00 3.06
5220 5718 5.043248 GGAGACCAAACAAAACTTGACATG 58.957 41.667 0.00 0.00 0.00 3.21
5221 5719 5.394115 GGAGACCAAACAAAACTTGACATGT 60.394 40.000 0.00 0.00 0.00 3.21
5222 5720 6.036577 AGACCAAACAAAACTTGACATGTT 57.963 33.333 0.00 1.02 37.59 2.71
5223 5721 7.164230 AGACCAAACAAAACTTGACATGTTA 57.836 32.000 0.00 0.00 35.09 2.41
5224 5722 7.781056 AGACCAAACAAAACTTGACATGTTAT 58.219 30.769 0.00 0.00 35.09 1.89
5225 5723 8.908903 AGACCAAACAAAACTTGACATGTTATA 58.091 29.630 0.00 0.00 35.09 0.98
5226 5724 9.522804 GACCAAACAAAACTTGACATGTTATAA 57.477 29.630 0.00 0.00 35.09 0.98
5235 5733 9.979578 AAACTTGACATGTTATAATTTTGCTGA 57.020 25.926 0.00 0.00 0.00 4.26
5236 5734 9.979578 AACTTGACATGTTATAATTTTGCTGAA 57.020 25.926 0.00 0.00 0.00 3.02
5237 5735 9.630098 ACTTGACATGTTATAATTTTGCTGAAG 57.370 29.630 0.00 0.00 0.00 3.02
5238 5736 8.984891 TTGACATGTTATAATTTTGCTGAAGG 57.015 30.769 0.00 0.00 0.00 3.46
5239 5737 7.546358 TGACATGTTATAATTTTGCTGAAGGG 58.454 34.615 0.00 0.00 0.00 3.95
5240 5738 7.395772 TGACATGTTATAATTTTGCTGAAGGGA 59.604 33.333 0.00 0.00 0.00 4.20
5241 5739 7.547227 ACATGTTATAATTTTGCTGAAGGGAC 58.453 34.615 0.00 0.00 0.00 4.46
5242 5740 6.524101 TGTTATAATTTTGCTGAAGGGACC 57.476 37.500 0.00 0.00 0.00 4.46
5243 5741 6.013379 TGTTATAATTTTGCTGAAGGGACCA 58.987 36.000 0.00 0.00 0.00 4.02
5244 5742 6.495181 TGTTATAATTTTGCTGAAGGGACCAA 59.505 34.615 0.00 0.00 0.00 3.67
5245 5743 7.015682 TGTTATAATTTTGCTGAAGGGACCAAA 59.984 33.333 0.00 0.00 0.00 3.28
5252 5750 5.387113 TGCTGAAGGGACCAAATGTATAT 57.613 39.130 0.00 0.00 0.00 0.86
5303 5812 3.592059 TCTTAAAGGATTCCGGTCGTTG 58.408 45.455 0.00 0.00 0.00 4.10
5304 5813 2.389962 TAAAGGATTCCGGTCGTTGG 57.610 50.000 0.00 0.00 0.00 3.77
5310 5819 2.089201 GATTCCGGTCGTTGGGATTTT 58.911 47.619 0.00 0.00 31.11 1.82
5334 5843 6.658188 TTTTTCCTATTCGGGTTGTTTGAT 57.342 33.333 0.00 0.00 0.00 2.57
5337 5846 4.912586 TCCTATTCGGGTTGTTTGATTCA 58.087 39.130 0.00 0.00 0.00 2.57
5341 5850 6.542370 CCTATTCGGGTTGTTTGATTCATACT 59.458 38.462 8.42 0.00 0.00 2.12
5344 5853 7.931578 TTCGGGTTGTTTGATTCATACTATT 57.068 32.000 8.42 0.00 0.00 1.73
5392 5907 3.525199 AGTTCCATCCACTTCAGCCTAAT 59.475 43.478 0.00 0.00 0.00 1.73
5393 5908 3.565764 TCCATCCACTTCAGCCTAATG 57.434 47.619 0.00 0.00 0.00 1.90
5405 5920 6.151817 ACTTCAGCCTAATGTGAAAAATCCTC 59.848 38.462 0.00 0.00 32.36 3.71
5408 5923 4.400567 AGCCTAATGTGAAAAATCCTCTGC 59.599 41.667 0.00 0.00 0.00 4.26
5412 5927 7.381323 CCTAATGTGAAAAATCCTCTGCTTTT 58.619 34.615 0.00 0.00 0.00 2.27
5416 5931 7.765695 TGTGAAAAATCCTCTGCTTTTCTAT 57.234 32.000 7.72 0.00 39.00 1.98
5417 5932 8.181904 TGTGAAAAATCCTCTGCTTTTCTATT 57.818 30.769 7.72 0.00 39.00 1.73
5418 5933 9.295825 TGTGAAAAATCCTCTGCTTTTCTATTA 57.704 29.630 7.72 0.00 39.00 0.98
5425 5940 6.418101 TCCTCTGCTTTTCTATTAATGTGCT 58.582 36.000 0.00 0.00 0.00 4.40
5426 5941 6.886459 TCCTCTGCTTTTCTATTAATGTGCTT 59.114 34.615 0.00 0.00 0.00 3.91
5427 5942 7.394359 TCCTCTGCTTTTCTATTAATGTGCTTT 59.606 33.333 0.00 0.00 0.00 3.51
5428 5943 8.677300 CCTCTGCTTTTCTATTAATGTGCTTTA 58.323 33.333 0.00 0.00 0.00 1.85
5456 6043 1.428448 TCGTGTGAATCAAAGAGGCG 58.572 50.000 0.00 0.00 0.00 5.52
5457 6044 1.148310 CGTGTGAATCAAAGAGGCGT 58.852 50.000 0.00 0.00 0.00 5.68
5459 6046 1.464997 GTGTGAATCAAAGAGGCGTCC 59.535 52.381 2.06 0.00 0.00 4.79
5461 6048 2.224523 TGTGAATCAAAGAGGCGTCCTT 60.225 45.455 2.06 0.00 31.76 3.36
5462 6049 3.007506 TGTGAATCAAAGAGGCGTCCTTA 59.992 43.478 2.06 0.00 31.76 2.69
5472 6059 1.373748 GCGTCCTTACAAGCGTGGA 60.374 57.895 4.26 0.00 0.00 4.02
5492 6079 0.868406 GACCAAGTTCCAACAGCGAG 59.132 55.000 0.00 0.00 0.00 5.03
5501 6088 3.884774 AACAGCGAGGGGCCAACA 61.885 61.111 4.39 0.00 45.17 3.33
5503 6090 2.825836 CAGCGAGGGGCCAACATC 60.826 66.667 4.39 0.00 45.17 3.06
5504 6091 3.329889 AGCGAGGGGCCAACATCA 61.330 61.111 4.39 0.00 45.17 3.07
5507 6094 2.008268 GCGAGGGGCCAACATCATTG 62.008 60.000 4.39 0.00 34.80 2.82
5508 6095 0.680921 CGAGGGGCCAACATCATTGT 60.681 55.000 4.39 0.00 37.82 2.71
5510 6097 2.733956 GAGGGGCCAACATCATTGTTA 58.266 47.619 4.39 0.00 44.24 2.41
5511 6098 3.299503 GAGGGGCCAACATCATTGTTAT 58.700 45.455 4.39 0.00 44.24 1.89
5512 6099 3.706086 GAGGGGCCAACATCATTGTTATT 59.294 43.478 4.39 0.00 44.24 1.40
5513 6100 4.877773 AGGGGCCAACATCATTGTTATTA 58.122 39.130 4.39 0.00 44.24 0.98
5514 6101 5.466819 AGGGGCCAACATCATTGTTATTAT 58.533 37.500 4.39 0.00 44.24 1.28
5515 6102 5.539955 AGGGGCCAACATCATTGTTATTATC 59.460 40.000 4.39 0.00 44.24 1.75
5551 6138 6.948589 TGGTAAACATATGTGGCTACAAGTA 58.051 36.000 9.63 0.00 40.84 2.24
5558 6145 7.109501 ACATATGTGGCTACAAGTATTTCACA 58.890 34.615 7.10 0.00 40.84 3.58
5586 6173 3.463944 TCCAACGAAAAGACAGGTTCTC 58.536 45.455 0.00 0.00 31.02 2.87
5588 6175 2.545537 ACGAAAAGACAGGTTCTCCC 57.454 50.000 0.00 0.00 31.02 4.30
5590 6177 2.037381 ACGAAAAGACAGGTTCTCCCTC 59.963 50.000 0.00 0.00 43.86 4.30
5591 6178 2.037251 CGAAAAGACAGGTTCTCCCTCA 59.963 50.000 0.00 0.00 43.86 3.86
5592 6179 3.669536 GAAAAGACAGGTTCTCCCTCAG 58.330 50.000 0.00 0.00 43.86 3.35
5646 6253 1.120530 TTCTTCTATGGCCCGAGGAC 58.879 55.000 0.00 0.00 0.00 3.85
5675 6282 0.455815 CTCCATCGTCCATCGTCACA 59.544 55.000 0.00 0.00 40.80 3.58
5691 6298 2.357517 CACTCACTCGGTGGCCAC 60.358 66.667 28.57 28.57 33.87 5.01
5692 6299 3.991051 ACTCACTCGGTGGCCACG 61.991 66.667 29.08 22.97 33.87 4.94
5693 6300 3.991051 CTCACTCGGTGGCCACGT 61.991 66.667 29.08 18.77 33.87 4.49
5694 6301 3.916392 CTCACTCGGTGGCCACGTC 62.916 68.421 29.08 15.62 33.87 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.913573 CCACGCGCACTACATCGC 61.914 66.667 5.73 0.00 46.98 4.58
47 48 4.845580 CTGGGCTGCCGCGAGATT 62.846 66.667 8.23 0.00 36.88 2.40
99 100 2.868583 TCGACGAGTAAGGAGGAATACG 59.131 50.000 0.00 0.00 0.00 3.06
102 103 2.099427 GCTTCGACGAGTAAGGAGGAAT 59.901 50.000 0.00 0.00 0.00 3.01
111 112 0.731417 GGCTACTGCTTCGACGAGTA 59.269 55.000 0.00 0.00 39.59 2.59
235 236 1.739466 GTTTCAATGGAGCATCGCTGA 59.261 47.619 0.00 0.00 39.88 4.26
237 238 1.470098 GTGTTTCAATGGAGCATCGCT 59.530 47.619 0.00 0.00 43.88 4.93
238 239 1.468054 GGTGTTTCAATGGAGCATCGC 60.468 52.381 0.00 0.00 34.37 4.58
260 261 4.290155 GCAACAAAACATCATCAAGTCGT 58.710 39.130 0.00 0.00 0.00 4.34
263 264 4.202000 TGTCGCAACAAAACATCATCAAGT 60.202 37.500 0.00 0.00 30.70 3.16
273 274 0.863957 CACCGGTGTCGCAACAAAAC 60.864 55.000 26.95 0.00 37.08 2.43
275 276 2.473760 CCACCGGTGTCGCAACAAA 61.474 57.895 31.80 0.00 37.08 2.83
276 277 2.897846 CCACCGGTGTCGCAACAA 60.898 61.111 31.80 0.00 37.08 2.83
321 322 2.277969 CGAAGCATCATCTGAGCTGTT 58.722 47.619 0.00 0.00 38.86 3.16
362 485 0.963355 GGTGCTTCAATGGGGCGTTA 60.963 55.000 0.00 0.00 0.00 3.18
368 491 1.234615 AACGTCGGTGCTTCAATGGG 61.235 55.000 0.00 0.00 0.00 4.00
503 626 1.342674 ACGACTATACTGCAAGGGGGA 60.343 52.381 0.00 0.00 39.30 4.81
505 628 1.754803 TGACGACTATACTGCAAGGGG 59.245 52.381 0.00 0.00 39.30 4.79
508 631 5.460419 GGAGAATTGACGACTATACTGCAAG 59.540 44.000 0.00 0.00 42.29 4.01
529 652 1.202976 CCATGGCTAAGATTGGGGGAG 60.203 57.143 0.00 0.00 0.00 4.30
541 664 1.324383 CAATGCAGCATCCATGGCTA 58.676 50.000 8.77 0.00 40.23 3.93
623 746 0.817634 CGCAACCAGAACCAGAACCA 60.818 55.000 0.00 0.00 0.00 3.67
624 747 1.949257 CGCAACCAGAACCAGAACC 59.051 57.895 0.00 0.00 0.00 3.62
625 748 1.282875 GCGCAACCAGAACCAGAAC 59.717 57.895 0.30 0.00 0.00 3.01
626 749 1.153066 TGCGCAACCAGAACCAGAA 60.153 52.632 8.16 0.00 0.00 3.02
627 750 1.597854 CTGCGCAACCAGAACCAGA 60.598 57.895 13.05 0.00 34.77 3.86
628 751 0.602638 TACTGCGCAACCAGAACCAG 60.603 55.000 13.05 0.00 36.67 4.00
629 752 0.602638 CTACTGCGCAACCAGAACCA 60.603 55.000 13.05 0.00 36.67 3.67
665 788 5.368989 TCTCTCTTATCTGTACGAGATGCA 58.631 41.667 14.40 0.00 41.86 3.96
680 803 3.366396 AGCTCATCCCGTTTCTCTCTTA 58.634 45.455 0.00 0.00 0.00 2.10
692 815 2.158900 TCTTCCAAATCGAGCTCATCCC 60.159 50.000 15.40 0.00 0.00 3.85
760 883 1.439679 GAAAATCAGTCGGGTCGCTT 58.560 50.000 0.00 0.00 0.00 4.68
793 916 3.447586 TGGAAAACGTTTGGATTCAACCA 59.552 39.130 15.46 10.79 38.24 3.67
803 926 6.238239 CCCCACTAAAATTTGGAAAACGTTTG 60.238 38.462 15.46 0.00 34.46 2.93
877 1000 3.634448 CACGGTATTTATCCCATTTGGCA 59.366 43.478 0.00 0.00 0.00 4.92
878 1001 3.634910 ACACGGTATTTATCCCATTTGGC 59.365 43.478 0.00 0.00 0.00 4.52
930 1054 3.924073 GGCACATATTTCGTTTTTCACCC 59.076 43.478 0.00 0.00 0.00 4.61
1093 1232 2.445654 GAGGGAGGAGGAGGGCAG 60.446 72.222 0.00 0.00 0.00 4.85
1166 1307 0.179189 GTTCGCCTCAGCCATTTTCG 60.179 55.000 0.00 0.00 34.57 3.46
1179 1320 1.062206 CTCCTCGTACGAGTTCGCC 59.938 63.158 35.85 0.00 44.43 5.54
1295 1436 2.418910 CGGATCTGACGGACCAGCT 61.419 63.158 0.00 0.00 34.28 4.24
1357 1498 0.586802 GCCAAACGAGACCACTCAAC 59.413 55.000 0.00 0.00 42.72 3.18
1364 1505 1.227853 ACACCAGCCAAACGAGACC 60.228 57.895 0.00 0.00 0.00 3.85
1538 1679 2.289592 ACGGCGGGAGTATTAGATCT 57.710 50.000 13.24 0.00 0.00 2.75
1539 1680 3.005578 AGAAACGGCGGGAGTATTAGATC 59.994 47.826 13.24 0.00 0.00 2.75
1541 1682 2.381911 AGAAACGGCGGGAGTATTAGA 58.618 47.619 13.24 0.00 0.00 2.10
1542 1683 2.884894 AGAAACGGCGGGAGTATTAG 57.115 50.000 13.24 0.00 0.00 1.73
1543 1684 3.615224 AAAGAAACGGCGGGAGTATTA 57.385 42.857 13.24 0.00 0.00 0.98
1544 1685 2.484742 AAAGAAACGGCGGGAGTATT 57.515 45.000 13.24 0.00 0.00 1.89
1614 1761 9.168451 TGTTGTGACTGTTGATTTCTTTTACTA 57.832 29.630 0.00 0.00 0.00 1.82
1615 1762 7.968405 GTGTTGTGACTGTTGATTTCTTTTACT 59.032 33.333 0.00 0.00 0.00 2.24
1616 1763 7.220108 GGTGTTGTGACTGTTGATTTCTTTTAC 59.780 37.037 0.00 0.00 0.00 2.01
1798 2045 5.253096 AGTTACAACATACCCCATCCTTTCT 59.747 40.000 0.00 0.00 0.00 2.52
1799 2046 5.357032 CAGTTACAACATACCCCATCCTTTC 59.643 44.000 0.00 0.00 0.00 2.62
1802 2049 4.108570 TCAGTTACAACATACCCCATCCT 58.891 43.478 0.00 0.00 0.00 3.24
1883 2131 2.044793 TGGGAGAACCACCTCTTGAT 57.955 50.000 0.00 0.00 46.80 2.57
1939 2187 2.026641 GCCCAGCTTTGCATGAGAATA 58.973 47.619 0.00 0.00 0.00 1.75
1949 2197 4.659172 TCCCGGTGCCCAGCTTTG 62.659 66.667 0.00 0.00 0.00 2.77
2058 2306 1.000843 GGCATGGGTTTGACAAAGGTC 59.999 52.381 0.00 0.00 44.57 3.85
2079 2327 1.178276 CCAGCGAGGTAAGAGACTGT 58.822 55.000 0.00 0.00 0.00 3.55
2217 2475 3.583966 ACCAAAACCATTCTCATGCCATT 59.416 39.130 0.00 0.00 0.00 3.16
2268 2526 1.405821 GCTACTGTGTGGACGATAGCT 59.594 52.381 0.00 0.00 42.67 3.32
2319 2577 4.081420 ACCTTCAACTAGCTCATTGTCGAT 60.081 41.667 9.13 0.00 0.00 3.59
2398 2656 8.834465 CAGAAATTCAATACCATAGAAGACCAG 58.166 37.037 0.00 0.00 0.00 4.00
2507 2766 5.300752 CATCTAGATACGTGCTTGGGAAAT 58.699 41.667 4.54 0.00 0.00 2.17
2508 2767 4.693283 CATCTAGATACGTGCTTGGGAAA 58.307 43.478 4.54 0.00 0.00 3.13
2509 2768 3.492656 GCATCTAGATACGTGCTTGGGAA 60.493 47.826 4.54 0.00 34.85 3.97
2512 2771 2.054363 CGCATCTAGATACGTGCTTGG 58.946 52.381 15.86 0.00 35.52 3.61
2546 2810 1.826385 CCTTTTCGGTGCCTTCATCT 58.174 50.000 0.00 0.00 0.00 2.90
2549 2813 2.258013 CGCCTTTTCGGTGCCTTCA 61.258 57.895 0.00 0.00 36.29 3.02
2591 2855 9.013229 TCTTTTCAATACATGATACACAAGCTT 57.987 29.630 0.00 0.00 38.03 3.74
2627 2891 6.074648 TGACCTCATCTTTGGGTTTGTAATT 58.925 36.000 0.00 0.00 33.01 1.40
2805 3072 4.537135 TGTTTTGTTTTGTAGGTTGCCA 57.463 36.364 0.00 0.00 0.00 4.92
2861 3129 8.894731 TGTTTGATCTAGACAGTGTAGAGTATC 58.105 37.037 12.69 6.71 30.04 2.24
2862 3130 8.809468 TGTTTGATCTAGACAGTGTAGAGTAT 57.191 34.615 12.69 0.00 30.04 2.12
2959 3230 1.640670 ACCAATAGCAGTCCCCAACAT 59.359 47.619 0.00 0.00 0.00 2.71
2969 3240 7.849804 ACATGAAAAGTACTACCAATAGCAG 57.150 36.000 0.00 0.00 30.75 4.24
3045 3316 2.292267 GCACCAAGGATCATCACGATT 58.708 47.619 0.00 0.00 33.17 3.34
3060 3331 2.203139 CCCGTGTCAGTTGCACCA 60.203 61.111 0.00 0.00 33.61 4.17
3063 3334 1.106351 ATTTGCCCGTGTCAGTTGCA 61.106 50.000 0.00 0.00 0.00 4.08
3064 3335 0.387239 GATTTGCCCGTGTCAGTTGC 60.387 55.000 0.00 0.00 0.00 4.17
3280 3670 1.428912 TGCTTGGGATGGAGGACTTTT 59.571 47.619 0.00 0.00 0.00 2.27
3284 3674 0.842635 ATCTGCTTGGGATGGAGGAC 59.157 55.000 0.00 0.00 0.00 3.85
3568 3961 7.111041 ACTCGTTTTTGTTAAACATCGAATTCG 59.889 33.333 21.78 21.78 41.45 3.34
3609 4002 3.620488 ACTTGGCCCATACATTACACAG 58.380 45.455 0.00 0.00 0.00 3.66
3617 4011 2.969821 AAGTGAACTTGGCCCATACA 57.030 45.000 0.00 0.00 34.38 2.29
3739 4149 4.702131 AGTGCAGTTATTTTCCATCTCCAC 59.298 41.667 0.00 0.00 0.00 4.02
3853 4264 5.049680 TCCGATTTCACAAAGTTAGCAGAAC 60.050 40.000 0.00 0.00 0.00 3.01
3859 4270 5.551760 ATGCTCCGATTTCACAAAGTTAG 57.448 39.130 0.00 0.00 0.00 2.34
3874 4285 1.331447 TGAATGAAATGCGATGCTCCG 59.669 47.619 0.00 0.00 0.00 4.63
3879 4290 5.877031 ACTTTCTCTGAATGAAATGCGATG 58.123 37.500 0.00 0.00 33.65 3.84
3881 4292 5.947228 AACTTTCTCTGAATGAAATGCGA 57.053 34.783 0.00 0.00 33.65 5.10
3973 4385 2.009774 ACACAAATCTATCAGTGCCGC 58.990 47.619 0.00 0.00 35.47 6.53
3977 4389 6.147656 TGTTGCTACACACAAATCTATCAGTG 59.852 38.462 0.00 0.00 37.95 3.66
4038 4450 1.613630 GTCTCAGGAAGGGCCCAGA 60.614 63.158 27.56 14.44 37.37 3.86
4180 4615 6.515832 AGTTTTTCCAACATCAGCCTTTTAG 58.484 36.000 0.00 0.00 0.00 1.85
4182 4617 5.357742 AGTTTTTCCAACATCAGCCTTTT 57.642 34.783 0.00 0.00 0.00 2.27
4286 4747 1.237533 TGTTGCGTGCATTCACTCAT 58.762 45.000 0.00 0.00 37.71 2.90
4300 4761 4.032786 GGTCACACTCAAACAATTTGTTGC 59.967 41.667 15.17 0.00 40.14 4.17
4427 4924 1.902508 TGCAAACTTGTTGGGGTTTCA 59.097 42.857 0.00 0.00 34.01 2.69
4431 4928 2.421248 CCATTTGCAAACTTGTTGGGGT 60.421 45.455 15.41 0.00 0.00 4.95
4436 4933 5.367302 ACATTAGCCATTTGCAAACTTGTT 58.633 33.333 15.41 6.52 44.83 2.83
4442 4939 5.465532 TCAGAACATTAGCCATTTGCAAA 57.534 34.783 15.44 15.44 44.83 3.68
4445 4942 6.335777 AGAATTCAGAACATTAGCCATTTGC 58.664 36.000 8.44 0.00 41.71 3.68
4463 4960 3.118445 AGGAGCCTGCAGAGTTAGAATTC 60.118 47.826 17.39 0.00 0.00 2.17
4465 4962 2.170187 CAGGAGCCTGCAGAGTTAGAAT 59.830 50.000 17.39 0.00 37.24 2.40
4468 4965 0.177604 CCAGGAGCCTGCAGAGTTAG 59.822 60.000 17.39 0.00 42.35 2.34
4474 4972 3.060615 GCAACCAGGAGCCTGCAG 61.061 66.667 6.78 6.78 42.35 4.41
4515 5013 2.551459 GTGCAGATTTCTGAACTGTGCT 59.449 45.455 23.52 2.33 46.68 4.40
4516 5014 2.926165 GTGCAGATTTCTGAACTGTGC 58.074 47.619 18.78 18.78 46.68 4.57
4540 5038 6.586463 CCATACATACATAACTAACCGCTGAG 59.414 42.308 0.00 0.00 0.00 3.35
4545 5043 7.541091 CAGTAGCCATACATACATAACTAACCG 59.459 40.741 0.00 0.00 34.07 4.44
4567 5065 8.484214 AGAGATTCTAATAATGCCTGACAGTA 57.516 34.615 0.93 0.00 32.53 2.74
4621 5119 4.130857 TGACAAACTTTACAAGATGCCGA 58.869 39.130 0.00 0.00 0.00 5.54
4646 5144 0.655733 AAGTTTCACACTTGCCGTCG 59.344 50.000 0.00 0.00 44.70 5.12
4658 5156 4.979335 TGGGTATCACATGTCAAGTTTCA 58.021 39.130 0.00 0.00 0.00 2.69
5051 5549 1.199097 CTTACACATTTGGACACCCGC 59.801 52.381 0.00 0.00 34.29 6.13
5053 5551 2.871453 ACCTTACACATTTGGACACCC 58.129 47.619 0.00 0.00 0.00 4.61
5055 5553 6.364976 GCATAAAACCTTACACATTTGGACAC 59.635 38.462 0.00 0.00 0.00 3.67
5056 5554 6.451393 GCATAAAACCTTACACATTTGGACA 58.549 36.000 0.00 0.00 0.00 4.02
5057 5555 5.867174 GGCATAAAACCTTACACATTTGGAC 59.133 40.000 0.00 0.00 0.00 4.02
5059 5557 4.862018 CGGCATAAAACCTTACACATTTGG 59.138 41.667 0.00 0.00 0.00 3.28
5060 5558 4.862018 CCGGCATAAAACCTTACACATTTG 59.138 41.667 0.00 0.00 0.00 2.32
5061 5559 4.525100 ACCGGCATAAAACCTTACACATTT 59.475 37.500 0.00 0.00 0.00 2.32
5062 5560 4.083565 ACCGGCATAAAACCTTACACATT 58.916 39.130 0.00 0.00 0.00 2.71
5063 5561 3.692690 ACCGGCATAAAACCTTACACAT 58.307 40.909 0.00 0.00 0.00 3.21
5064 5562 3.143211 ACCGGCATAAAACCTTACACA 57.857 42.857 0.00 0.00 0.00 3.72
5065 5563 4.231439 CAAACCGGCATAAAACCTTACAC 58.769 43.478 0.00 0.00 0.00 2.90
5066 5564 3.305471 GCAAACCGGCATAAAACCTTACA 60.305 43.478 0.00 0.00 0.00 2.41
5067 5565 3.247442 GCAAACCGGCATAAAACCTTAC 58.753 45.455 0.00 0.00 0.00 2.34
5068 5566 2.095161 CGCAAACCGGCATAAAACCTTA 60.095 45.455 0.00 0.00 0.00 2.69
5069 5567 1.336424 CGCAAACCGGCATAAAACCTT 60.336 47.619 0.00 0.00 0.00 3.50
5071 5569 2.731875 CGCAAACCGGCATAAAACC 58.268 52.632 0.00 0.00 0.00 3.27
5081 5579 4.948576 GGTTTTACCCGCAAACCG 57.051 55.556 0.37 0.00 42.88 4.44
5085 5583 2.054232 TCAAGTGGTTTTACCCGCAA 57.946 45.000 0.00 0.00 37.50 4.85
5087 5585 1.471287 GGATCAAGTGGTTTTACCCGC 59.529 52.381 0.00 0.00 37.50 6.13
5088 5586 2.785562 TGGATCAAGTGGTTTTACCCG 58.214 47.619 0.00 0.00 37.50 5.28
5089 5587 3.509967 CCTTGGATCAAGTGGTTTTACCC 59.490 47.826 6.86 0.00 39.58 3.69
5090 5588 3.509967 CCCTTGGATCAAGTGGTTTTACC 59.490 47.826 6.86 0.00 39.58 2.85
5091 5589 4.022329 CACCCTTGGATCAAGTGGTTTTAC 60.022 45.833 13.98 0.00 40.41 2.01
5092 5590 4.141135 TCACCCTTGGATCAAGTGGTTTTA 60.141 41.667 13.98 5.25 40.41 1.52
5093 5591 2.965147 CACCCTTGGATCAAGTGGTTTT 59.035 45.455 13.98 0.00 40.41 2.43
5094 5592 2.176798 TCACCCTTGGATCAAGTGGTTT 59.823 45.455 13.98 0.00 40.41 3.27
5096 5594 1.444933 TCACCCTTGGATCAAGTGGT 58.555 50.000 12.03 12.03 41.85 4.16
5097 5595 2.584835 TTCACCCTTGGATCAAGTGG 57.415 50.000 6.86 9.30 39.58 4.00
5098 5596 9.224267 CTTATATATTCACCCTTGGATCAAGTG 57.776 37.037 6.86 0.00 39.58 3.16
5099 5597 8.386264 CCTTATATATTCACCCTTGGATCAAGT 58.614 37.037 6.86 0.00 39.58 3.16
5100 5598 8.386264 ACCTTATATATTCACCCTTGGATCAAG 58.614 37.037 0.00 1.00 40.75 3.02
5101 5599 8.287904 ACCTTATATATTCACCCTTGGATCAA 57.712 34.615 0.00 0.00 0.00 2.57
5103 5601 9.588096 AAAACCTTATATATTCACCCTTGGATC 57.412 33.333 0.00 0.00 0.00 3.36
5104 5602 9.951866 AAAAACCTTATATATTCACCCTTGGAT 57.048 29.630 0.00 0.00 0.00 3.41
5109 5607 9.822727 CCCATAAAAACCTTATATATTCACCCT 57.177 33.333 0.00 0.00 0.00 4.34
5110 5608 9.596308 ACCCATAAAAACCTTATATATTCACCC 57.404 33.333 0.00 0.00 0.00 4.61
5119 5617 9.287818 AGTCTCCTAACCCATAAAAACCTTATA 57.712 33.333 0.00 0.00 0.00 0.98
5121 5619 7.578458 AGTCTCCTAACCCATAAAAACCTTA 57.422 36.000 0.00 0.00 0.00 2.69
5122 5620 6.464530 AGTCTCCTAACCCATAAAAACCTT 57.535 37.500 0.00 0.00 0.00 3.50
5123 5621 6.464530 AAGTCTCCTAACCCATAAAAACCT 57.535 37.500 0.00 0.00 0.00 3.50
5124 5622 7.400439 ACTAAGTCTCCTAACCCATAAAAACC 58.600 38.462 0.00 0.00 0.00 3.27
5125 5623 8.859236 AACTAAGTCTCCTAACCCATAAAAAC 57.141 34.615 0.00 0.00 0.00 2.43
5131 5629 7.452189 GCTCTATAACTAAGTCTCCTAACCCAT 59.548 40.741 0.00 0.00 0.00 4.00
5133 5631 7.005902 AGCTCTATAACTAAGTCTCCTAACCC 58.994 42.308 0.00 0.00 0.00 4.11
5135 5633 8.680039 TCAGCTCTATAACTAAGTCTCCTAAC 57.320 38.462 0.00 0.00 0.00 2.34
5136 5634 9.344772 CTTCAGCTCTATAACTAAGTCTCCTAA 57.655 37.037 0.00 0.00 0.00 2.69
5138 5636 6.775629 CCTTCAGCTCTATAACTAAGTCTCCT 59.224 42.308 0.00 0.00 0.00 3.69
5139 5637 6.773685 TCCTTCAGCTCTATAACTAAGTCTCC 59.226 42.308 0.00 0.00 0.00 3.71
5140 5638 7.519328 CGTCCTTCAGCTCTATAACTAAGTCTC 60.519 44.444 0.00 0.00 0.00 3.36
5145 5643 5.443283 TCCGTCCTTCAGCTCTATAACTAA 58.557 41.667 0.00 0.00 0.00 2.24
5146 5644 5.045012 TCCGTCCTTCAGCTCTATAACTA 57.955 43.478 0.00 0.00 0.00 2.24
5147 5645 3.899726 TCCGTCCTTCAGCTCTATAACT 58.100 45.455 0.00 0.00 0.00 2.24
5149 5647 4.021229 TGTTCCGTCCTTCAGCTCTATAA 58.979 43.478 0.00 0.00 0.00 0.98
5151 5649 2.457598 TGTTCCGTCCTTCAGCTCTAT 58.542 47.619 0.00 0.00 0.00 1.98
5152 5650 1.919240 TGTTCCGTCCTTCAGCTCTA 58.081 50.000 0.00 0.00 0.00 2.43
5153 5651 1.001406 CTTGTTCCGTCCTTCAGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
5155 5653 1.048601 TCTTGTTCCGTCCTTCAGCT 58.951 50.000 0.00 0.00 0.00 4.24
5156 5654 2.003301 GATCTTGTTCCGTCCTTCAGC 58.997 52.381 0.00 0.00 0.00 4.26
5157 5655 2.263077 CGATCTTGTTCCGTCCTTCAG 58.737 52.381 0.00 0.00 0.00 3.02
5159 5657 1.000145 GCGATCTTGTTCCGTCCTTC 59.000 55.000 0.00 0.00 0.00 3.46
5162 5660 2.165301 CGGCGATCTTGTTCCGTCC 61.165 63.158 0.00 0.00 37.33 4.79
5163 5661 2.799540 GCGGCGATCTTGTTCCGTC 61.800 63.158 12.98 0.00 43.45 4.79
5164 5662 2.813908 GCGGCGATCTTGTTCCGT 60.814 61.111 12.98 0.00 43.45 4.69
5165 5663 1.705337 ATTGCGGCGATCTTGTTCCG 61.705 55.000 12.98 0.00 44.29 4.30
5166 5664 0.248215 CATTGCGGCGATCTTGTTCC 60.248 55.000 12.98 0.00 0.00 3.62
5167 5665 0.447801 ACATTGCGGCGATCTTGTTC 59.552 50.000 12.98 0.00 0.00 3.18
5168 5666 0.168788 CACATTGCGGCGATCTTGTT 59.831 50.000 12.98 0.00 0.00 2.83
5169 5667 1.647545 CCACATTGCGGCGATCTTGT 61.648 55.000 12.98 5.14 0.00 3.16
5171 5669 1.078497 TCCACATTGCGGCGATCTT 60.078 52.632 12.98 0.00 0.00 2.40
5173 5671 0.529773 TAGTCCACATTGCGGCGATC 60.530 55.000 12.98 0.00 0.00 3.69
5174 5672 0.106708 ATAGTCCACATTGCGGCGAT 59.893 50.000 12.98 0.00 0.00 4.58
5176 5674 1.795768 ATATAGTCCACATTGCGGCG 58.204 50.000 0.51 0.51 0.00 6.46
5177 5675 3.056107 TCCTATATAGTCCACATTGCGGC 60.056 47.826 8.92 0.00 0.00 6.53
5178 5676 4.462834 TCTCCTATATAGTCCACATTGCGG 59.537 45.833 8.92 0.00 0.00 5.69
5179 5677 5.403246 GTCTCCTATATAGTCCACATTGCG 58.597 45.833 8.92 0.00 0.00 4.85
5180 5678 5.246203 TGGTCTCCTATATAGTCCACATTGC 59.754 44.000 8.92 0.00 28.93 3.56
5182 5680 7.347222 TGTTTGGTCTCCTATATAGTCCACATT 59.653 37.037 8.92 0.00 32.88 2.71
5187 5685 8.265764 AGTTTTGTTTGGTCTCCTATATAGTCC 58.734 37.037 8.92 6.35 0.00 3.85
5188 5686 9.668497 AAGTTTTGTTTGGTCTCCTATATAGTC 57.332 33.333 8.92 0.00 0.00 2.59
5189 5687 9.449719 CAAGTTTTGTTTGGTCTCCTATATAGT 57.550 33.333 8.92 0.00 0.00 2.12
5190 5688 9.667107 TCAAGTTTTGTTTGGTCTCCTATATAG 57.333 33.333 2.46 2.46 0.00 1.31
5191 5689 9.444600 GTCAAGTTTTGTTTGGTCTCCTATATA 57.555 33.333 0.00 0.00 0.00 0.86
5192 5690 7.942341 TGTCAAGTTTTGTTTGGTCTCCTATAT 59.058 33.333 0.00 0.00 0.00 0.86
5193 5691 7.284074 TGTCAAGTTTTGTTTGGTCTCCTATA 58.716 34.615 0.00 0.00 0.00 1.31
5194 5692 6.126409 TGTCAAGTTTTGTTTGGTCTCCTAT 58.874 36.000 0.00 0.00 0.00 2.57
5195 5693 5.502079 TGTCAAGTTTTGTTTGGTCTCCTA 58.498 37.500 0.00 0.00 0.00 2.94
5196 5694 4.340617 TGTCAAGTTTTGTTTGGTCTCCT 58.659 39.130 0.00 0.00 0.00 3.69
5197 5695 4.712122 TGTCAAGTTTTGTTTGGTCTCC 57.288 40.909 0.00 0.00 0.00 3.71
5198 5696 5.650543 ACATGTCAAGTTTTGTTTGGTCTC 58.349 37.500 0.00 0.00 0.00 3.36
5199 5697 5.659440 ACATGTCAAGTTTTGTTTGGTCT 57.341 34.783 0.00 0.00 0.00 3.85
5200 5698 9.522804 TTATAACATGTCAAGTTTTGTTTGGTC 57.477 29.630 0.00 0.00 34.39 4.02
5209 5707 9.979578 TCAGCAAAATTATAACATGTCAAGTTT 57.020 25.926 0.00 3.30 0.00 2.66
5210 5708 9.979578 TTCAGCAAAATTATAACATGTCAAGTT 57.020 25.926 0.00 0.00 0.00 2.66
5211 5709 9.630098 CTTCAGCAAAATTATAACATGTCAAGT 57.370 29.630 0.00 0.00 0.00 3.16
5212 5710 9.079833 CCTTCAGCAAAATTATAACATGTCAAG 57.920 33.333 0.00 0.00 0.00 3.02
5213 5711 8.034215 CCCTTCAGCAAAATTATAACATGTCAA 58.966 33.333 0.00 0.00 0.00 3.18
5214 5712 7.395772 TCCCTTCAGCAAAATTATAACATGTCA 59.604 33.333 0.00 0.00 0.00 3.58
5215 5713 7.702348 GTCCCTTCAGCAAAATTATAACATGTC 59.298 37.037 0.00 0.00 0.00 3.06
5216 5714 7.363793 GGTCCCTTCAGCAAAATTATAACATGT 60.364 37.037 0.00 0.00 0.00 3.21
5217 5715 6.980397 GGTCCCTTCAGCAAAATTATAACATG 59.020 38.462 0.00 0.00 0.00 3.21
5218 5716 6.667414 TGGTCCCTTCAGCAAAATTATAACAT 59.333 34.615 0.00 0.00 0.00 2.71
5219 5717 6.013379 TGGTCCCTTCAGCAAAATTATAACA 58.987 36.000 0.00 0.00 0.00 2.41
5220 5718 6.524101 TGGTCCCTTCAGCAAAATTATAAC 57.476 37.500 0.00 0.00 0.00 1.89
5221 5719 7.546250 TTTGGTCCCTTCAGCAAAATTATAA 57.454 32.000 0.00 0.00 40.04 0.98
5222 5720 7.180051 ACATTTGGTCCCTTCAGCAAAATTATA 59.820 33.333 2.27 0.00 44.59 0.98
5223 5721 6.013466 ACATTTGGTCCCTTCAGCAAAATTAT 60.013 34.615 2.27 0.00 44.59 1.28
5224 5722 5.306678 ACATTTGGTCCCTTCAGCAAAATTA 59.693 36.000 2.27 0.00 44.59 1.40
5225 5723 4.102996 ACATTTGGTCCCTTCAGCAAAATT 59.897 37.500 2.27 0.00 44.59 1.82
5226 5724 3.647590 ACATTTGGTCCCTTCAGCAAAAT 59.352 39.130 2.27 0.00 44.59 1.82
5227 5725 3.037549 ACATTTGGTCCCTTCAGCAAAA 58.962 40.909 2.27 0.00 44.59 2.44
5228 5726 2.676748 ACATTTGGTCCCTTCAGCAAA 58.323 42.857 0.71 0.71 45.28 3.68
5229 5727 2.380064 ACATTTGGTCCCTTCAGCAA 57.620 45.000 0.00 0.00 31.94 3.91
5230 5728 3.737559 ATACATTTGGTCCCTTCAGCA 57.262 42.857 0.00 0.00 0.00 4.41
5231 5729 4.520492 CCATATACATTTGGTCCCTTCAGC 59.480 45.833 0.00 0.00 0.00 4.26
5232 5730 5.694995 ACCATATACATTTGGTCCCTTCAG 58.305 41.667 0.00 0.00 42.61 3.02
5233 5731 5.725551 ACCATATACATTTGGTCCCTTCA 57.274 39.130 0.00 0.00 42.61 3.02
5234 5732 7.418337 AAAACCATATACATTTGGTCCCTTC 57.582 36.000 5.02 0.00 45.44 3.46
5235 5733 7.563556 CCTAAAACCATATACATTTGGTCCCTT 59.436 37.037 5.02 3.24 45.44 3.95
5236 5734 7.066781 CCTAAAACCATATACATTTGGTCCCT 58.933 38.462 5.02 0.00 45.44 4.20
5237 5735 6.837048 ACCTAAAACCATATACATTTGGTCCC 59.163 38.462 5.02 0.00 45.44 4.46
5238 5736 7.891498 ACCTAAAACCATATACATTTGGTCC 57.109 36.000 5.02 0.00 45.44 4.46
5239 5737 9.623000 AGTACCTAAAACCATATACATTTGGTC 57.377 33.333 5.02 0.00 45.44 4.02
5241 5739 9.847224 AGAGTACCTAAAACCATATACATTTGG 57.153 33.333 0.00 0.00 39.02 3.28
5252 5750 8.754991 TTTGAATCAAAGAGTACCTAAAACCA 57.245 30.769 4.03 0.00 0.00 3.67
5281 5779 4.189231 CAACGACCGGAATCCTTTAAGAT 58.811 43.478 9.46 0.00 0.00 2.40
5316 5825 5.835113 ATGAATCAAACAACCCGAATAGG 57.165 39.130 0.00 0.00 40.63 2.57
5322 5831 7.315247 TGAATAGTATGAATCAAACAACCCG 57.685 36.000 0.00 0.00 0.00 5.28
5386 5901 4.400567 AGCAGAGGATTTTTCACATTAGGC 59.599 41.667 0.00 0.00 0.00 3.93
5392 5907 7.765695 ATAGAAAAGCAGAGGATTTTTCACA 57.234 32.000 10.43 0.73 42.25 3.58
5416 5931 9.900710 ACACGATTTGTAAATAAAGCACATTAA 57.099 25.926 0.00 0.00 36.32 1.40
5417 5932 9.335891 CACACGATTTGTAAATAAAGCACATTA 57.664 29.630 0.00 0.00 35.67 1.90
5418 5933 8.079203 TCACACGATTTGTAAATAAAGCACATT 58.921 29.630 0.00 0.00 35.67 2.71
5420 5935 6.960468 TCACACGATTTGTAAATAAAGCACA 58.040 32.000 0.00 0.00 35.67 4.57
5421 5936 7.845617 TTCACACGATTTGTAAATAAAGCAC 57.154 32.000 0.00 0.00 35.67 4.40
5422 5937 8.293157 TGATTCACACGATTTGTAAATAAAGCA 58.707 29.630 0.00 0.00 35.67 3.91
5423 5938 8.667987 TGATTCACACGATTTGTAAATAAAGC 57.332 30.769 0.00 0.00 35.67 3.51
5428 5943 8.023128 CCTCTTTGATTCACACGATTTGTAAAT 58.977 33.333 0.00 0.00 35.67 1.40
5456 6043 1.672145 GGTCTCCACGCTTGTAAGGAC 60.672 57.143 0.00 0.00 0.00 3.85
5457 6044 0.606604 GGTCTCCACGCTTGTAAGGA 59.393 55.000 0.00 0.00 0.00 3.36
5459 6046 2.069273 CTTGGTCTCCACGCTTGTAAG 58.931 52.381 0.00 0.00 30.78 2.34
5461 6048 1.045407 ACTTGGTCTCCACGCTTGTA 58.955 50.000 0.00 0.00 30.78 2.41
5462 6049 0.180406 AACTTGGTCTCCACGCTTGT 59.820 50.000 0.00 0.00 30.78 3.16
5472 6059 0.468226 TCGCTGTTGGAACTTGGTCT 59.532 50.000 0.00 0.00 0.00 3.85
5536 6123 5.878116 GGTGTGAAATACTTGTAGCCACATA 59.122 40.000 0.00 0.00 35.83 2.29
5627 6234 1.120530 GTCCTCGGGCCATAGAAGAA 58.879 55.000 4.39 0.00 0.00 2.52
5629 6236 1.048724 TGGTCCTCGGGCCATAGAAG 61.049 60.000 4.89 0.00 0.00 2.85
5646 6253 5.655488 GATGGACGATGGAGTTCTATATGG 58.345 45.833 0.00 0.00 0.00 2.74
5675 6282 3.991051 CGTGGCCACCGAGTGAGT 61.991 66.667 29.95 0.00 35.23 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.