Multiple sequence alignment - TraesCS2A01G153000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G153000 chr2A 100.000 5406 0 0 1 5406 101098716 101093311 0.000000e+00 9984.0
1 TraesCS2A01G153000 chr2A 82.748 313 38 9 216 517 715207589 715207282 1.150000e-66 265.0
2 TraesCS2A01G153000 chr2B 89.502 3534 224 53 1293 4739 153226975 153223502 0.000000e+00 4335.0
3 TraesCS2A01G153000 chr2B 85.530 698 51 25 557 1216 153227700 153227015 0.000000e+00 684.0
4 TraesCS2A01G153000 chr2B 88.521 453 23 12 4980 5406 153223171 153222722 6.200000e-144 521.0
5 TraesCS2A01G153000 chr2B 90.588 255 18 5 4742 4995 153223461 153223212 3.120000e-87 333.0
6 TraesCS2A01G153000 chr2B 97.143 35 1 0 482 516 68216520 68216554 5.850000e-05 60.2
7 TraesCS2A01G153000 chr2D 90.746 2172 122 23 2621 4739 102084186 102082041 0.000000e+00 2824.0
8 TraesCS2A01G153000 chr2D 90.596 1276 61 21 1346 2592 102085431 102084186 0.000000e+00 1637.0
9 TraesCS2A01G153000 chr2D 84.350 754 40 29 517 1215 102086240 102085510 0.000000e+00 667.0
10 TraesCS2A01G153000 chr2D 92.213 244 17 2 4980 5223 102044255 102044014 1.440000e-90 344.0
11 TraesCS2A01G153000 chr2D 91.414 198 7 2 4742 4939 102082000 102081813 4.150000e-66 263.0
12 TraesCS2A01G153000 chr2D 91.912 136 5 4 5271 5406 101999699 101999570 9.250000e-43 185.0
13 TraesCS2A01G153000 chr2D 78.696 230 17 12 2 207 102086454 102086233 2.040000e-24 124.0
14 TraesCS2A01G153000 chr2D 85.965 57 6 2 4939 4994 102044350 102044295 5.850000e-05 60.2
15 TraesCS2A01G153000 chr5D 86.774 310 34 4 208 516 217420672 217420369 6.710000e-89 339.0
16 TraesCS2A01G153000 chr1A 85.846 325 34 3 204 518 153268617 153268295 8.680000e-88 335.0
17 TraesCS2A01G153000 chr5B 85.016 307 34 3 220 516 11085475 11085779 8.800000e-78 302.0
18 TraesCS2A01G153000 chr5B 83.333 234 26 5 293 516 181486406 181486636 2.550000e-48 204.0
19 TraesCS2A01G153000 chr6D 83.692 325 40 4 207 520 34007006 34007328 1.470000e-75 294.0
20 TraesCS2A01G153000 chr6B 84.615 286 41 3 207 491 504217613 504217330 1.150000e-71 281.0
21 TraesCS2A01G153000 chr6B 82.464 211 22 10 318 518 633868154 633868359 2.590000e-38 171.0
22 TraesCS2A01G153000 chrUn 84.138 290 37 8 206 491 155017940 155018224 6.900000e-69 272.0
23 TraesCS2A01G153000 chrUn 84.138 290 37 8 206 491 399497205 399496921 6.900000e-69 272.0
24 TraesCS2A01G153000 chrUn 84.138 290 37 8 206 491 463429446 463429162 6.900000e-69 272.0
25 TraesCS2A01G153000 chr3B 84.138 290 37 8 206 491 792276579 792276295 6.900000e-69 272.0
26 TraesCS2A01G153000 chr3B 84.138 290 37 8 206 491 793467729 793468013 6.900000e-69 272.0
27 TraesCS2A01G153000 chr3B 83.793 290 38 8 206 491 792362974 792362690 3.210000e-67 267.0
28 TraesCS2A01G153000 chr3A 86.038 265 22 5 262 516 124928586 124928327 2.480000e-68 270.0
29 TraesCS2A01G153000 chr4D 81.308 321 44 11 208 516 487456852 487456536 4.180000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G153000 chr2A 101093311 101098716 5405 True 9984.00 9984 100.00000 1 5406 1 chr2A.!!$R1 5405
1 TraesCS2A01G153000 chr2B 153222722 153227700 4978 True 1468.25 4335 88.53525 557 5406 4 chr2B.!!$R1 4849
2 TraesCS2A01G153000 chr2D 102081813 102086454 4641 True 1103.00 2824 87.16040 2 4939 5 chr2D.!!$R3 4937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 129 0.107410 AATTTGCGCGTCCTCCCATA 60.107 50.0 8.43 0.0 0.00 2.74 F
126 132 0.107410 TTGCGCGTCCTCCCATAAAT 60.107 50.0 8.43 0.0 0.00 1.40 F
683 750 0.107848 CTTTGCCTCCCGACCGTAAT 60.108 55.0 0.00 0.0 0.00 1.89 F
1699 1816 0.032403 TGGCTGTGAATTGTGCAAGC 59.968 50.0 0.00 0.0 0.00 4.01 F
1780 1897 0.180406 AGCCGACAGAAACACCAAGT 59.820 50.0 0.00 0.0 0.00 3.16 F
1818 1935 0.249398 TGAAGTCTTCTTAGGGCGGC 59.751 55.0 13.67 0.0 33.64 6.53 F
3625 3806 0.317770 CGCAGAACGTGTTGCCAAAT 60.318 50.0 16.17 0.0 37.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1027 1138 1.003718 CCACCAAGGACCCGAGAAC 60.004 63.158 0.0 0.0 41.22 3.01 R
1344 1455 1.145598 CAGCAGAGACCCGCATCAT 59.854 57.895 0.0 0.0 0.00 2.45 R
2291 2425 1.168714 GTTGCCTCTCCATGTGGTTC 58.831 55.000 0.0 0.0 36.34 3.62 R
3664 3845 0.673333 TGATAAGCACCTGCCACACG 60.673 55.000 0.0 0.0 43.38 4.49 R
3766 3962 0.955919 CCGTTCTGGGAGCCAAACTC 60.956 60.000 0.0 0.0 45.45 3.01 R
3770 3966 3.249189 AGCCGTTCTGGGAGCCAA 61.249 61.111 0.0 0.0 38.63 4.52 R
4997 5253 0.395586 TGCACACTTTGTTCCAGGCT 60.396 50.000 0.0 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 44 3.627577 ACGTGTTGCATCTTCAAGAGTTT 59.372 39.130 0.00 0.00 0.00 2.66
41 45 4.214437 CGTGTTGCATCTTCAAGAGTTTC 58.786 43.478 0.00 0.00 0.00 2.78
53 59 3.514309 TCAAGAGTTTCAGTACTAGGCCC 59.486 47.826 0.00 0.00 0.00 5.80
54 60 3.185880 AGAGTTTCAGTACTAGGCCCA 57.814 47.619 0.00 0.00 0.00 5.36
55 61 3.725634 AGAGTTTCAGTACTAGGCCCAT 58.274 45.455 0.00 0.00 0.00 4.00
56 62 3.452627 AGAGTTTCAGTACTAGGCCCATG 59.547 47.826 0.00 0.00 0.00 3.66
57 63 3.182152 AGTTTCAGTACTAGGCCCATGT 58.818 45.455 0.00 0.00 0.00 3.21
58 64 3.587506 AGTTTCAGTACTAGGCCCATGTT 59.412 43.478 0.00 0.00 0.00 2.71
59 65 4.781087 AGTTTCAGTACTAGGCCCATGTTA 59.219 41.667 0.00 0.00 0.00 2.41
60 66 5.249852 AGTTTCAGTACTAGGCCCATGTTAA 59.750 40.000 0.00 0.00 0.00 2.01
75 81 6.312672 GCCCATGTTAAATGTGTGATTTTACC 59.687 38.462 0.00 0.00 0.00 2.85
97 103 1.234615 CGGAACATCCCAAACGCACT 61.235 55.000 0.00 0.00 31.13 4.40
105 111 0.882927 CCCAAACGCACTCTTCCGAA 60.883 55.000 0.00 0.00 0.00 4.30
123 129 0.107410 AATTTGCGCGTCCTCCCATA 60.107 50.000 8.43 0.00 0.00 2.74
126 132 0.107410 TTGCGCGTCCTCCCATAAAT 60.107 50.000 8.43 0.00 0.00 1.40
131 137 3.303791 GCGCGTCCTCCCATAAATAAAAG 60.304 47.826 8.43 0.00 0.00 2.27
133 139 4.573201 CGCGTCCTCCCATAAATAAAAGAA 59.427 41.667 0.00 0.00 0.00 2.52
134 140 5.065474 CGCGTCCTCCCATAAATAAAAGAAA 59.935 40.000 0.00 0.00 0.00 2.52
135 141 6.263344 GCGTCCTCCCATAAATAAAAGAAAC 58.737 40.000 0.00 0.00 0.00 2.78
136 142 6.095021 GCGTCCTCCCATAAATAAAAGAAACT 59.905 38.462 0.00 0.00 0.00 2.66
138 144 7.201705 CGTCCTCCCATAAATAAAAGAAACTCC 60.202 40.741 0.00 0.00 0.00 3.85
139 145 7.614192 GTCCTCCCATAAATAAAAGAAACTCCA 59.386 37.037 0.00 0.00 0.00 3.86
140 146 7.834181 TCCTCCCATAAATAAAAGAAACTCCAG 59.166 37.037 0.00 0.00 0.00 3.86
143 149 7.122650 TCCCATAAATAAAAGAAACTCCAGCTG 59.877 37.037 6.78 6.78 0.00 4.24
144 150 6.753744 CCATAAATAAAAGAAACTCCAGCTGC 59.246 38.462 8.66 0.00 0.00 5.25
146 152 1.332195 AAAAGAAACTCCAGCTGCCC 58.668 50.000 8.66 0.00 0.00 5.36
147 153 0.890996 AAAGAAACTCCAGCTGCCCG 60.891 55.000 8.66 0.54 0.00 6.13
148 154 2.747855 GAAACTCCAGCTGCCCGG 60.748 66.667 8.66 0.00 0.00 5.73
149 155 3.249189 AAACTCCAGCTGCCCGGA 61.249 61.111 8.66 8.02 0.00 5.14
151 157 2.826777 AAACTCCAGCTGCCCGGATG 62.827 60.000 8.66 6.33 0.00 3.51
230 255 4.288531 GGAACGTATCCTCTAACATCACG 58.711 47.826 8.87 0.00 45.56 4.35
231 256 4.036027 GGAACGTATCCTCTAACATCACGA 59.964 45.833 8.87 0.00 45.56 4.35
232 257 5.449588 GGAACGTATCCTCTAACATCACGAA 60.450 44.000 8.87 0.00 45.56 3.85
233 258 5.571784 ACGTATCCTCTAACATCACGAAA 57.428 39.130 0.00 0.00 0.00 3.46
234 259 5.579718 ACGTATCCTCTAACATCACGAAAG 58.420 41.667 0.00 0.00 0.00 2.62
235 260 4.976731 CGTATCCTCTAACATCACGAAAGG 59.023 45.833 0.00 0.00 0.00 3.11
236 261 5.220989 CGTATCCTCTAACATCACGAAAGGA 60.221 44.000 0.00 0.00 36.00 3.36
237 262 5.878406 ATCCTCTAACATCACGAAAGGAT 57.122 39.130 0.00 0.00 37.34 3.24
238 263 5.011090 TCCTCTAACATCACGAAAGGATG 57.989 43.478 0.00 0.00 45.93 3.51
246 271 5.524511 CATCACGAAAGGATGTTACGAAA 57.475 39.130 0.00 0.00 37.85 3.46
247 272 4.977741 TCACGAAAGGATGTTACGAAAC 57.022 40.909 0.00 0.00 36.07 2.78
248 273 4.624015 TCACGAAAGGATGTTACGAAACT 58.376 39.130 0.00 0.00 36.51 2.66
249 274 5.771469 TCACGAAAGGATGTTACGAAACTA 58.229 37.500 0.00 0.00 36.51 2.24
250 275 5.630680 TCACGAAAGGATGTTACGAAACTAC 59.369 40.000 0.00 0.00 36.51 2.73
251 276 5.403166 CACGAAAGGATGTTACGAAACTACA 59.597 40.000 0.00 0.00 36.51 2.74
252 277 5.632347 ACGAAAGGATGTTACGAAACTACAG 59.368 40.000 0.00 0.00 36.51 2.74
253 278 5.632347 CGAAAGGATGTTACGAAACTACAGT 59.368 40.000 0.00 0.00 36.51 3.55
254 279 6.399669 CGAAAGGATGTTACGAAACTACAGTG 60.400 42.308 0.00 0.00 36.51 3.66
255 280 5.464030 AGGATGTTACGAAACTACAGTGT 57.536 39.130 0.00 0.00 36.51 3.55
256 281 6.579666 AGGATGTTACGAAACTACAGTGTA 57.420 37.500 2.36 2.36 36.51 2.90
257 282 6.985117 AGGATGTTACGAAACTACAGTGTAA 58.015 36.000 4.21 0.00 36.51 2.41
258 283 7.436118 AGGATGTTACGAAACTACAGTGTAAA 58.564 34.615 4.21 0.00 36.51 2.01
259 284 8.092687 AGGATGTTACGAAACTACAGTGTAAAT 58.907 33.333 4.21 0.00 36.51 1.40
260 285 8.715088 GGATGTTACGAAACTACAGTGTAAATT 58.285 33.333 4.21 2.39 36.51 1.82
261 286 9.737025 GATGTTACGAAACTACAGTGTAAATTC 57.263 33.333 4.21 10.26 36.51 2.17
262 287 8.645730 TGTTACGAAACTACAGTGTAAATTCA 57.354 30.769 19.72 6.27 36.51 2.57
263 288 8.757789 TGTTACGAAACTACAGTGTAAATTCAG 58.242 33.333 19.72 15.88 36.51 3.02
264 289 8.758715 GTTACGAAACTACAGTGTAAATTCAGT 58.241 33.333 19.72 18.79 32.54 3.41
265 290 7.173863 ACGAAACTACAGTGTAAATTCAGTG 57.826 36.000 19.72 11.06 42.45 3.66
266 291 6.071463 CGAAACTACAGTGTAAATTCAGTGC 58.929 40.000 19.72 6.60 41.01 4.40
267 292 6.292649 CGAAACTACAGTGTAAATTCAGTGCA 60.293 38.462 19.72 0.00 41.01 4.57
268 293 6.935741 AACTACAGTGTAAATTCAGTGCAA 57.064 33.333 4.21 0.00 41.01 4.08
269 294 6.935741 ACTACAGTGTAAATTCAGTGCAAA 57.064 33.333 4.21 0.00 41.01 3.68
270 295 7.328277 ACTACAGTGTAAATTCAGTGCAAAA 57.672 32.000 4.21 0.00 41.01 2.44
271 296 7.767261 ACTACAGTGTAAATTCAGTGCAAAAA 58.233 30.769 4.21 0.00 41.01 1.94
294 319 8.697507 AAAAGAAAAGAGATGTCATGGTTACT 57.302 30.769 0.00 0.00 0.00 2.24
295 320 7.678947 AAGAAAAGAGATGTCATGGTTACTG 57.321 36.000 0.00 0.00 0.00 2.74
296 321 6.773638 AGAAAAGAGATGTCATGGTTACTGT 58.226 36.000 0.00 0.00 0.00 3.55
297 322 7.907389 AGAAAAGAGATGTCATGGTTACTGTA 58.093 34.615 0.00 0.00 0.00 2.74
298 323 8.037758 AGAAAAGAGATGTCATGGTTACTGTAG 58.962 37.037 0.00 0.00 0.00 2.74
299 324 5.269505 AGAGATGTCATGGTTACTGTAGC 57.730 43.478 0.00 0.00 0.00 3.58
300 325 4.711846 AGAGATGTCATGGTTACTGTAGCA 59.288 41.667 4.08 0.00 0.00 3.49
301 326 5.187772 AGAGATGTCATGGTTACTGTAGCAA 59.812 40.000 4.08 0.00 0.00 3.91
302 327 5.994250 AGATGTCATGGTTACTGTAGCAAT 58.006 37.500 4.08 0.00 0.00 3.56
303 328 7.069950 AGAGATGTCATGGTTACTGTAGCAATA 59.930 37.037 4.08 0.00 0.00 1.90
304 329 7.739825 AGATGTCATGGTTACTGTAGCAATAT 58.260 34.615 4.08 0.00 0.00 1.28
305 330 7.658982 AGATGTCATGGTTACTGTAGCAATATG 59.341 37.037 4.08 5.54 0.00 1.78
306 331 6.649155 TGTCATGGTTACTGTAGCAATATGT 58.351 36.000 4.08 0.00 0.00 2.29
307 332 7.787028 TGTCATGGTTACTGTAGCAATATGTA 58.213 34.615 4.08 0.00 0.00 2.29
308 333 7.709182 TGTCATGGTTACTGTAGCAATATGTAC 59.291 37.037 4.08 0.00 0.00 2.90
309 334 7.926555 GTCATGGTTACTGTAGCAATATGTACT 59.073 37.037 4.08 0.00 0.00 2.73
310 335 7.926018 TCATGGTTACTGTAGCAATATGTACTG 59.074 37.037 4.08 0.00 0.00 2.74
311 336 7.177832 TGGTTACTGTAGCAATATGTACTGT 57.822 36.000 4.08 0.00 35.96 3.55
312 337 8.296211 TGGTTACTGTAGCAATATGTACTGTA 57.704 34.615 4.08 0.00 34.37 2.74
313 338 8.410912 TGGTTACTGTAGCAATATGTACTGTAG 58.589 37.037 4.08 0.00 35.94 2.74
314 339 8.627403 GGTTACTGTAGCAATATGTACTGTAGA 58.373 37.037 4.08 0.00 35.94 2.59
318 343 8.750298 ACTGTAGCAATATGTACTGTAGAAAGT 58.250 33.333 0.00 0.00 31.69 2.66
319 344 9.587772 CTGTAGCAATATGTACTGTAGAAAGTT 57.412 33.333 0.00 0.00 0.00 2.66
323 348 9.587772 AGCAATATGTACTGTAGAAAGTTACTG 57.412 33.333 0.00 0.00 0.00 2.74
324 349 9.367444 GCAATATGTACTGTAGAAAGTTACTGT 57.633 33.333 0.00 2.20 38.64 3.55
363 388 8.856490 AAATATGAGTTCGATTTTATTGCACC 57.144 30.769 0.00 0.00 0.00 5.01
364 389 4.335082 TGAGTTCGATTTTATTGCACCG 57.665 40.909 0.00 0.00 0.00 4.94
365 390 3.098636 GAGTTCGATTTTATTGCACCGC 58.901 45.455 0.00 0.00 0.00 5.68
366 391 2.486203 AGTTCGATTTTATTGCACCGCA 59.514 40.909 0.00 0.00 36.47 5.69
377 402 2.015736 TGCACCGCAATTTTGTTTGT 57.984 40.000 0.00 0.00 34.76 2.83
378 403 3.165058 TGCACCGCAATTTTGTTTGTA 57.835 38.095 0.00 0.00 34.76 2.41
379 404 3.722147 TGCACCGCAATTTTGTTTGTAT 58.278 36.364 0.00 0.00 34.76 2.29
380 405 3.492383 TGCACCGCAATTTTGTTTGTATG 59.508 39.130 0.00 0.00 34.76 2.39
381 406 3.492756 GCACCGCAATTTTGTTTGTATGT 59.507 39.130 0.00 0.00 0.00 2.29
382 407 4.681942 GCACCGCAATTTTGTTTGTATGTA 59.318 37.500 0.00 0.00 0.00 2.29
383 408 5.175856 GCACCGCAATTTTGTTTGTATGTAA 59.824 36.000 0.00 0.00 0.00 2.41
384 409 6.128688 GCACCGCAATTTTGTTTGTATGTAAT 60.129 34.615 0.00 0.00 0.00 1.89
385 410 7.570324 GCACCGCAATTTTGTTTGTATGTAATT 60.570 33.333 0.00 0.00 0.00 1.40
386 411 8.279103 CACCGCAATTTTGTTTGTATGTAATTT 58.721 29.630 0.00 0.00 0.00 1.82
387 412 8.831550 ACCGCAATTTTGTTTGTATGTAATTTT 58.168 25.926 0.00 0.00 0.00 1.82
388 413 9.657121 CCGCAATTTTGTTTGTATGTAATTTTT 57.343 25.926 0.00 0.00 0.00 1.94
473 498 8.883302 TCATATGAATATGAAGAAGGGATGTCA 58.117 33.333 1.98 0.00 44.36 3.58
474 499 9.163899 CATATGAATATGAAGAAGGGATGTCAG 57.836 37.037 0.00 0.00 42.05 3.51
475 500 5.933617 TGAATATGAAGAAGGGATGTCAGG 58.066 41.667 0.00 0.00 0.00 3.86
476 501 5.429762 TGAATATGAAGAAGGGATGTCAGGT 59.570 40.000 0.00 0.00 0.00 4.00
477 502 6.615316 TGAATATGAAGAAGGGATGTCAGGTA 59.385 38.462 0.00 0.00 0.00 3.08
478 503 4.762289 ATGAAGAAGGGATGTCAGGTAC 57.238 45.455 0.00 0.00 0.00 3.34
479 504 3.791320 TGAAGAAGGGATGTCAGGTACT 58.209 45.455 0.00 0.00 43.88 2.73
494 519 3.504375 AGGTACTGTAACTTCCCTTCGT 58.496 45.455 0.00 0.00 37.18 3.85
495 520 3.257624 AGGTACTGTAACTTCCCTTCGTG 59.742 47.826 0.00 0.00 37.18 4.35
496 521 3.256631 GGTACTGTAACTTCCCTTCGTGA 59.743 47.826 0.00 0.00 0.00 4.35
497 522 4.081807 GGTACTGTAACTTCCCTTCGTGAT 60.082 45.833 0.00 0.00 0.00 3.06
498 523 3.926616 ACTGTAACTTCCCTTCGTGATG 58.073 45.455 0.00 0.00 0.00 3.07
499 524 3.323979 ACTGTAACTTCCCTTCGTGATGT 59.676 43.478 0.00 0.00 0.00 3.06
500 525 4.202326 ACTGTAACTTCCCTTCGTGATGTT 60.202 41.667 0.00 0.00 35.22 2.71
501 526 5.011329 ACTGTAACTTCCCTTCGTGATGTTA 59.989 40.000 0.00 0.00 33.65 2.41
502 527 5.475719 TGTAACTTCCCTTCGTGATGTTAG 58.524 41.667 0.00 0.00 34.79 2.34
503 528 4.884668 AACTTCCCTTCGTGATGTTAGA 57.115 40.909 0.00 0.00 30.88 2.10
504 529 4.457834 ACTTCCCTTCGTGATGTTAGAG 57.542 45.455 0.00 0.00 0.00 2.43
505 530 3.195825 ACTTCCCTTCGTGATGTTAGAGG 59.804 47.826 0.00 0.00 0.00 3.69
506 531 3.095912 TCCCTTCGTGATGTTAGAGGA 57.904 47.619 0.00 0.00 0.00 3.71
507 532 3.643237 TCCCTTCGTGATGTTAGAGGAT 58.357 45.455 0.00 0.00 0.00 3.24
508 533 3.637229 TCCCTTCGTGATGTTAGAGGATC 59.363 47.826 0.00 0.00 0.00 3.36
519 544 3.207354 GAGGATCTCGTTCCGCCA 58.793 61.111 0.00 0.00 40.94 5.69
520 545 1.515954 GAGGATCTCGTTCCGCCAA 59.484 57.895 0.00 0.00 40.94 4.52
521 546 0.108329 GAGGATCTCGTTCCGCCAAA 60.108 55.000 0.00 0.00 40.94 3.28
522 547 0.108138 AGGATCTCGTTCCGCCAAAG 60.108 55.000 0.00 0.00 40.94 2.77
523 548 1.090052 GGATCTCGTTCCGCCAAAGG 61.090 60.000 0.00 0.00 0.00 3.11
524 549 1.706287 GATCTCGTTCCGCCAAAGGC 61.706 60.000 0.00 0.00 46.75 4.35
637 684 4.464947 CACACCTTTTTCTTCTTCCTCCT 58.535 43.478 0.00 0.00 0.00 3.69
675 742 2.176273 CGAGATGCTTTGCCTCCCG 61.176 63.158 0.00 0.00 0.00 5.14
683 750 0.107848 CTTTGCCTCCCGACCGTAAT 60.108 55.000 0.00 0.00 0.00 1.89
706 791 1.387756 CTCCGCGTTTACACTAAACCG 59.612 52.381 4.92 4.78 43.85 4.44
709 794 0.166597 GCGTTTACACTAAACCGGCC 59.833 55.000 0.00 0.00 43.85 6.13
716 801 1.270465 ACACTAAACCGGCCACAGTAC 60.270 52.381 0.00 0.00 0.00 2.73
717 802 1.050204 ACTAAACCGGCCACAGTACA 58.950 50.000 0.00 0.00 0.00 2.90
718 803 1.001633 ACTAAACCGGCCACAGTACAG 59.998 52.381 0.00 0.50 0.00 2.74
719 804 0.320946 TAAACCGGCCACAGTACAGC 60.321 55.000 0.00 0.00 0.00 4.40
720 805 2.332312 AAACCGGCCACAGTACAGCA 62.332 55.000 0.00 0.00 0.00 4.41
841 940 3.667282 CCAGCTGCGCTTGCACTT 61.667 61.111 23.22 4.91 45.56 3.16
849 948 4.748679 GCTTGCACTTGCGCTCGG 62.749 66.667 9.73 0.61 45.83 4.63
919 1018 1.490574 CACGATCCCTTCTCCCTCTT 58.509 55.000 0.00 0.00 0.00 2.85
983 1094 1.513622 GTTGGGACGGAGAGAGCTC 59.486 63.158 5.27 5.27 40.54 4.09
1023 1134 0.402121 GTTCCTGGGTCCTTCTTGCT 59.598 55.000 0.00 0.00 0.00 3.91
1027 1138 0.607489 CTGGGTCCTTCTTGCTGTGG 60.607 60.000 0.00 0.00 0.00 4.17
1029 1140 0.178990 GGGTCCTTCTTGCTGTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
1037 1148 0.951040 CTTGCTGTGGTTCTCGGGTC 60.951 60.000 0.00 0.00 0.00 4.46
1043 1154 1.460689 TGGTTCTCGGGTCCTTGGT 60.461 57.895 0.00 0.00 0.00 3.67
1146 1257 4.070552 GCCTTCGTCGCCCTCACT 62.071 66.667 0.00 0.00 0.00 3.41
1191 1302 4.774124 AGGGAGCCGGTAACTAATTAAAC 58.226 43.478 1.90 0.00 0.00 2.01
1216 1327 2.092699 CCTCTCCCAGAATTGTTCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
1218 1329 1.279271 CTCCCAGAATTGTTCCTCCGT 59.721 52.381 0.00 0.00 0.00 4.69
1219 1330 2.500098 CTCCCAGAATTGTTCCTCCGTA 59.500 50.000 0.00 0.00 0.00 4.02
1220 1331 3.112263 TCCCAGAATTGTTCCTCCGTAT 58.888 45.455 0.00 0.00 0.00 3.06
1221 1332 3.118408 TCCCAGAATTGTTCCTCCGTATG 60.118 47.826 0.00 0.00 0.00 2.39
1222 1333 2.614057 CCAGAATTGTTCCTCCGTATGC 59.386 50.000 0.00 0.00 0.00 3.14
1223 1334 3.535561 CAGAATTGTTCCTCCGTATGCT 58.464 45.455 0.00 0.00 0.00 3.79
1224 1335 4.442893 CCAGAATTGTTCCTCCGTATGCTA 60.443 45.833 0.00 0.00 0.00 3.49
1225 1336 4.747108 CAGAATTGTTCCTCCGTATGCTAG 59.253 45.833 0.00 0.00 0.00 3.42
1226 1337 4.406003 AGAATTGTTCCTCCGTATGCTAGT 59.594 41.667 0.00 0.00 0.00 2.57
1227 1338 5.597182 AGAATTGTTCCTCCGTATGCTAGTA 59.403 40.000 0.00 0.00 0.00 1.82
1228 1339 4.913335 TTGTTCCTCCGTATGCTAGTAG 57.087 45.455 0.00 0.00 0.00 2.57
1229 1340 4.160642 TGTTCCTCCGTATGCTAGTAGA 57.839 45.455 0.00 0.00 0.00 2.59
1230 1341 4.135306 TGTTCCTCCGTATGCTAGTAGAG 58.865 47.826 0.00 0.00 0.00 2.43
1231 1342 4.136051 GTTCCTCCGTATGCTAGTAGAGT 58.864 47.826 0.00 0.00 0.00 3.24
1232 1343 5.163269 TGTTCCTCCGTATGCTAGTAGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
1233 1344 5.149973 TCCTCCGTATGCTAGTAGAGTAG 57.850 47.826 0.00 0.00 0.00 2.57
1234 1345 4.592351 TCCTCCGTATGCTAGTAGAGTAGT 59.408 45.833 0.00 0.00 0.00 2.73
1235 1346 5.777223 TCCTCCGTATGCTAGTAGAGTAGTA 59.223 44.000 0.00 0.00 0.00 1.82
1236 1347 5.868801 CCTCCGTATGCTAGTAGAGTAGTAC 59.131 48.000 0.00 0.00 0.00 2.73
1237 1348 6.295236 CCTCCGTATGCTAGTAGAGTAGTACT 60.295 46.154 1.37 1.37 37.09 2.73
1238 1349 6.453943 TCCGTATGCTAGTAGAGTAGTACTG 58.546 44.000 7.76 0.00 34.91 2.74
1239 1350 6.041409 TCCGTATGCTAGTAGAGTAGTACTGT 59.959 42.308 7.76 6.34 34.91 3.55
1240 1351 7.231519 TCCGTATGCTAGTAGAGTAGTACTGTA 59.768 40.741 7.76 5.18 34.91 2.74
1241 1352 7.869937 CCGTATGCTAGTAGAGTAGTACTGTAA 59.130 40.741 7.76 0.00 34.91 2.41
1242 1353 9.421806 CGTATGCTAGTAGAGTAGTACTGTAAT 57.578 37.037 7.76 10.04 34.91 1.89
1276 1387 7.548196 TTGCCGGTAGTAATATTCTTTCTTG 57.452 36.000 1.90 0.00 0.00 3.02
1290 1401 7.704789 ATTCTTTCTTGTTGTTGCAAAGATC 57.295 32.000 0.00 0.00 34.03 2.75
1291 1402 5.273170 TCTTTCTTGTTGTTGCAAAGATCG 58.727 37.500 0.00 0.00 29.99 3.69
1329 1440 2.009051 TCACATGCTTGCCGTAGATTG 58.991 47.619 0.00 0.00 0.00 2.67
1340 1451 0.811616 CGTAGATTGGCCCAGTGAGC 60.812 60.000 0.00 0.00 0.00 4.26
1366 1477 2.433318 GCGGGTCTCTGCTGTGTC 60.433 66.667 0.00 0.00 41.88 3.67
1389 1503 0.531200 CCTGGTCGGTCAGAGTAACC 59.469 60.000 7.36 0.00 36.93 2.85
1432 1546 3.497103 TGCCATAGAGGGATTGTGATG 57.503 47.619 0.00 0.00 38.09 3.07
1445 1559 4.274459 GGATTGTGATGGCTCATGTTCTAC 59.726 45.833 0.00 0.00 32.98 2.59
1446 1560 4.558226 TTGTGATGGCTCATGTTCTACT 57.442 40.909 0.00 0.00 32.98 2.57
1447 1561 5.675684 TTGTGATGGCTCATGTTCTACTA 57.324 39.130 0.00 0.00 32.98 1.82
1448 1562 5.876651 TGTGATGGCTCATGTTCTACTAT 57.123 39.130 0.00 0.00 32.98 2.12
1449 1563 6.239217 TGTGATGGCTCATGTTCTACTATT 57.761 37.500 0.00 0.00 32.98 1.73
1450 1564 6.653020 TGTGATGGCTCATGTTCTACTATTT 58.347 36.000 0.00 0.00 32.98 1.40
1451 1565 7.112122 TGTGATGGCTCATGTTCTACTATTTT 58.888 34.615 0.00 0.00 32.98 1.82
1452 1566 7.611467 TGTGATGGCTCATGTTCTACTATTTTT 59.389 33.333 0.00 0.00 32.98 1.94
1475 1589 4.890581 TCTCCTCTTCAGTATCCACTTAGC 59.109 45.833 0.00 0.00 30.46 3.09
1476 1590 3.961408 TCCTCTTCAGTATCCACTTAGCC 59.039 47.826 0.00 0.00 30.46 3.93
1477 1591 3.706594 CCTCTTCAGTATCCACTTAGCCA 59.293 47.826 0.00 0.00 30.46 4.75
1478 1592 4.442192 CCTCTTCAGTATCCACTTAGCCAC 60.442 50.000 0.00 0.00 30.46 5.01
1479 1593 4.353777 TCTTCAGTATCCACTTAGCCACT 58.646 43.478 0.00 0.00 30.46 4.00
1480 1594 4.777896 TCTTCAGTATCCACTTAGCCACTT 59.222 41.667 0.00 0.00 30.46 3.16
1481 1595 5.955959 TCTTCAGTATCCACTTAGCCACTTA 59.044 40.000 0.00 0.00 30.46 2.24
1482 1596 5.854010 TCAGTATCCACTTAGCCACTTAG 57.146 43.478 0.00 0.00 30.46 2.18
1483 1597 4.649674 TCAGTATCCACTTAGCCACTTAGG 59.350 45.833 0.00 0.00 34.42 2.69
1484 1598 4.649674 CAGTATCCACTTAGCCACTTAGGA 59.350 45.833 0.00 0.00 33.42 2.94
1488 1602 3.031736 CCACTTAGCCACTTAGGAGCTA 58.968 50.000 2.07 2.07 41.22 3.32
1497 1611 4.274459 GCCACTTAGGAGCTATGTTGATTG 59.726 45.833 0.00 0.00 41.22 2.67
1528 1645 5.244785 TGCAGTCTTATCCTTGTAGTACG 57.755 43.478 0.00 0.00 0.00 3.67
1538 1655 3.998341 TCCTTGTAGTACGATTGTTTGGC 59.002 43.478 0.00 0.00 0.00 4.52
1561 1678 1.033746 AGTAGCATGTGCCATGTGCC 61.034 55.000 14.21 5.18 43.38 5.01
1562 1679 1.001145 TAGCATGTGCCATGTGCCA 60.001 52.632 14.21 1.91 43.38 4.92
1563 1680 0.396001 TAGCATGTGCCATGTGCCAT 60.396 50.000 14.21 3.83 43.38 4.40
1564 1681 1.520564 GCATGTGCCATGTGCCATG 60.521 57.895 20.37 20.37 44.62 3.66
1565 1682 1.894512 CATGTGCCATGTGCCATGT 59.105 52.632 18.46 0.00 40.66 3.21
1566 1683 0.459411 CATGTGCCATGTGCCATGTG 60.459 55.000 18.46 6.78 40.66 3.21
1567 1684 2.125832 GTGCCATGTGCCATGTGC 60.126 61.111 12.36 13.96 40.16 4.57
1633 1750 1.000521 CTGGTGGTGCCCATGATGT 60.001 57.895 0.00 0.00 35.28 3.06
1651 1768 7.605691 CCATGATGTATTCTCCTCACCTAATTC 59.394 40.741 0.00 0.00 0.00 2.17
1699 1816 0.032403 TGGCTGTGAATTGTGCAAGC 59.968 50.000 0.00 0.00 0.00 4.01
1704 1821 3.568538 CTGTGAATTGTGCAAGCTAACC 58.431 45.455 0.00 0.00 0.00 2.85
1715 1832 2.415893 GCAAGCTAACCGTGCATGATTT 60.416 45.455 7.72 2.71 46.38 2.17
1730 1847 4.678840 GCATGATTTCTTGGTCACCATTCC 60.679 45.833 0.00 0.00 31.53 3.01
1780 1897 0.180406 AGCCGACAGAAACACCAAGT 59.820 50.000 0.00 0.00 0.00 3.16
1818 1935 0.249398 TGAAGTCTTCTTAGGGCGGC 59.751 55.000 13.67 0.00 33.64 6.53
1819 1936 0.537653 GAAGTCTTCTTAGGGCGGCT 59.462 55.000 9.56 0.00 33.64 5.52
1823 1948 1.522580 CTTCTTAGGGCGGCTCTGC 60.523 63.158 13.84 0.00 0.00 4.26
1845 1970 8.022550 TCTGCTTTATAAATGTGTGTTGTGATG 58.977 33.333 0.00 0.00 0.00 3.07
1890 2016 4.323257 CCAAATAAGACTCTGGTTACCGGT 60.323 45.833 13.98 13.98 0.00 5.28
1918 2044 6.855836 TGCTTTGGATTTTAGAAGCAGTATG 58.144 36.000 5.60 0.00 46.65 2.39
2052 2186 5.431765 CTTACAGTATGCTTGGATGGAAGT 58.568 41.667 0.00 0.00 42.53 3.01
2172 2306 5.122396 GTGGACTGAGCGATAAGTTTGAATT 59.878 40.000 0.00 0.00 0.00 2.17
2177 2311 4.455533 TGAGCGATAAGTTTGAATTGCACT 59.544 37.500 0.00 0.00 35.33 4.40
2209 2343 3.589951 ATGCCTTAGCTGATGGTGATT 57.410 42.857 0.00 0.00 40.80 2.57
2258 2392 4.039004 TGGTGCAATGATGTTAAAAGCTGT 59.961 37.500 0.00 0.00 0.00 4.40
2291 2425 4.129737 AGTCGGCGTGGGTCATCG 62.130 66.667 6.85 0.00 0.00 3.84
2339 2473 6.823689 AGTTTACAGGCATAATGAGTAACAGG 59.176 38.462 0.00 0.00 0.00 4.00
2361 2495 4.339530 GGCCTGAAGAAAATCCTGGTATTC 59.660 45.833 0.00 0.00 0.00 1.75
2371 2505 9.454859 AGAAAATCCTGGTATTCTTCTAAACAG 57.545 33.333 0.00 0.00 0.00 3.16
2377 2515 6.934645 CCTGGTATTCTTCTAAACAGTTGTCA 59.065 38.462 0.00 0.00 0.00 3.58
2378 2516 7.607991 CCTGGTATTCTTCTAAACAGTTGTCAT 59.392 37.037 0.00 0.00 0.00 3.06
2388 2526 7.047891 TCTAAACAGTTGTCATGAACTTGTCT 58.952 34.615 0.00 0.00 33.75 3.41
2398 2536 6.597672 TGTCATGAACTTGTCTTGTGTAGTTT 59.402 34.615 0.00 0.00 33.95 2.66
2399 2537 7.766738 TGTCATGAACTTGTCTTGTGTAGTTTA 59.233 33.333 0.00 0.00 33.95 2.01
2413 2551 9.978044 CTTGTGTAGTTTAGTAGTACTCCTTTT 57.022 33.333 5.96 0.00 34.35 2.27
2442 2580 8.451748 GTCCAAAAGAGGAATATAACTGTTGAC 58.548 37.037 2.69 0.00 39.92 3.18
2443 2581 8.160765 TCCAAAAGAGGAATATAACTGTTGACA 58.839 33.333 2.69 0.00 33.93 3.58
2449 2596 6.109359 AGGAATATAACTGTTGACACTCTGC 58.891 40.000 2.69 0.00 0.00 4.26
2451 2598 6.256757 GGAATATAACTGTTGACACTCTGCTC 59.743 42.308 2.69 0.00 0.00 4.26
2459 2606 3.895232 TGACACTCTGCTCCTATTTCC 57.105 47.619 0.00 0.00 0.00 3.13
2611 2759 5.437289 TCTGCATTTTACTTCACAAGTGG 57.563 39.130 0.00 0.00 42.84 4.00
2647 2795 8.655651 TTCATTTGAACAGTTCCCAAATAAAC 57.344 30.769 10.93 0.00 38.13 2.01
2664 2812 9.567848 CCAAATAAACATGTACACTGGTTATTC 57.432 33.333 25.12 0.00 42.68 1.75
2665 2813 9.567848 CAAATAAACATGTACACTGGTTATTCC 57.432 33.333 25.12 0.00 42.68 3.01
2719 2868 8.857098 TGTACATAACAGATACTCCATTCTACC 58.143 37.037 0.00 0.00 33.01 3.18
2774 2923 5.984233 TTTTACTGATCCAATTCGATCCG 57.016 39.130 10.13 6.74 38.32 4.18
2894 3043 1.209504 TGCTAGTCAGGTATTGGTGCC 59.790 52.381 0.00 0.00 0.00 5.01
2907 3056 5.889289 GGTATTGGTGCCTCCATAGTTAAAA 59.111 40.000 0.00 0.00 46.60 1.52
2908 3057 6.549736 GGTATTGGTGCCTCCATAGTTAAAAT 59.450 38.462 0.00 0.00 46.60 1.82
3249 3399 6.494893 TCTATTACCATTTGCAGTGTTGAC 57.505 37.500 0.00 0.00 0.00 3.18
3276 3426 2.359531 GGGTCGTCGAGAAATGAGAGAT 59.640 50.000 0.00 0.00 0.00 2.75
3279 3429 4.266502 GGTCGTCGAGAAATGAGAGATTTG 59.733 45.833 0.00 0.00 0.00 2.32
3396 3549 3.495100 CCTGTAGCACTGGTTCTGACTTT 60.495 47.826 0.00 0.00 33.14 2.66
3397 3550 4.130118 CTGTAGCACTGGTTCTGACTTTT 58.870 43.478 0.00 0.00 0.00 2.27
3406 3559 7.064016 GCACTGGTTCTGACTTTTATCTTAGAG 59.936 40.741 0.00 0.00 0.00 2.43
3422 3575 5.428253 TCTTAGAGTATTCATGTGCCAACC 58.572 41.667 0.00 0.00 0.00 3.77
3552 3732 5.012664 ACAACCATCCTACTACATGTGACAA 59.987 40.000 9.11 0.00 0.00 3.18
3625 3806 0.317770 CGCAGAACGTGTTGCCAAAT 60.318 50.000 16.17 0.00 37.00 2.32
3661 3842 7.010023 CGACTTTTATCTTGAACACTGCTTAC 58.990 38.462 0.00 0.00 0.00 2.34
3664 3845 6.462073 TTTATCTTGAACACTGCTTACGAC 57.538 37.500 0.00 0.00 0.00 4.34
3698 3879 5.979517 GTGCTTATCATGCATTTTAACCCTC 59.020 40.000 0.00 0.00 42.69 4.30
3716 3897 6.642707 ACCCTCTGATTTAAGAGATACGAG 57.357 41.667 2.79 0.00 45.59 4.18
3728 3909 4.448210 AGAGATACGAGACTGAGAGGAAC 58.552 47.826 0.00 0.00 0.00 3.62
3742 3938 7.484140 ACTGAGAGGAACTGAAACAAATTTTC 58.516 34.615 0.00 0.00 41.55 2.29
3766 3962 6.207417 TCCTTGTATTTTTCCAGCTTCAAGAG 59.793 38.462 0.00 0.00 34.79 2.85
3770 3966 6.772716 TGTATTTTTCCAGCTTCAAGAGAGTT 59.227 34.615 0.00 0.00 0.00 3.01
3865 4061 6.424812 GCAATCAGCTTCAGTTTTTAAATGGT 59.575 34.615 0.00 0.00 41.15 3.55
3866 4062 7.598493 GCAATCAGCTTCAGTTTTTAAATGGTA 59.402 33.333 0.00 0.00 41.15 3.25
3873 4069 9.274065 GCTTCAGTTTTTAAATGGTATACTTCG 57.726 33.333 2.25 0.00 0.00 3.79
3878 4074 5.744666 TTTAAATGGTATACTTCGCTGCC 57.255 39.130 2.25 0.00 0.00 4.85
3905 4101 4.582701 AGATCTTCTGAGCCGTAATCTG 57.417 45.455 0.00 0.00 0.00 2.90
3909 4105 3.129462 TCTTCTGAGCCGTAATCTGTCAG 59.871 47.826 0.00 0.00 36.73 3.51
3911 4107 0.179137 TGAGCCGTAATCTGTCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
3912 4108 0.100682 GAGCCGTAATCTGTCAGCGA 59.899 55.000 0.00 0.00 0.00 4.93
3925 4121 4.459337 TCTGTCAGCGAAAGAGTAGATTGA 59.541 41.667 0.00 0.00 0.00 2.57
3926 4122 5.048013 TCTGTCAGCGAAAGAGTAGATTGAA 60.048 40.000 0.00 0.00 0.00 2.69
3954 4154 5.046304 TCTCCCTATGTATAATGCAGGCTTC 60.046 44.000 0.00 0.00 0.00 3.86
3990 4190 0.759346 ACGCTGTGAAGGGTTTCTCT 59.241 50.000 0.00 0.00 34.31 3.10
4011 4211 1.379044 GTCAGGGCAGAATGGGGTG 60.379 63.158 0.00 0.00 35.86 4.61
4032 4232 4.909880 GTGTTTATCAACTCTTGTTTCGCC 59.090 41.667 0.00 0.00 33.52 5.54
4035 4235 1.305201 TCAACTCTTGTTTCGCCCAC 58.695 50.000 0.00 0.00 33.52 4.61
4068 4268 5.130705 AGAGACAGGATACATGGTACTCA 57.869 43.478 0.00 0.00 41.41 3.41
4074 4274 4.813161 CAGGATACATGGTACTCAAGCAAG 59.187 45.833 0.00 0.00 39.48 4.01
4217 4419 6.949352 ACATGCCAGACTATTTATTCCTTG 57.051 37.500 0.00 0.00 0.00 3.61
4230 4432 9.806203 CTATTTATTCCTTGTCAATTGCATGAA 57.194 29.630 0.00 8.62 0.00 2.57
4360 4565 2.048503 GACTGCGCGTACCCTTGT 60.049 61.111 8.43 0.00 0.00 3.16
4390 4595 2.100584 GTGCCATCACCTTGTGTTCAAA 59.899 45.455 0.00 0.00 37.24 2.69
4469 4674 1.904865 AGCGAGTGGGTACAACCGA 60.905 57.895 0.00 0.00 39.83 4.69
4470 4675 1.005867 GCGAGTGGGTACAACCGAA 60.006 57.895 0.00 0.00 39.83 4.30
4570 4782 2.502510 GCCTCACATGCAAACGCG 60.503 61.111 3.53 3.53 0.00 6.01
4572 4784 1.796151 CCTCACATGCAAACGCGAT 59.204 52.632 15.93 0.00 0.00 4.58
4577 4789 0.955428 ACATGCAAACGCGATGAGGT 60.955 50.000 15.93 7.68 0.00 3.85
4600 4812 6.093633 GGTCCTCTGCGTTATTTTAGTTTCAT 59.906 38.462 0.00 0.00 0.00 2.57
4633 4846 4.454728 TCTTTCCATTGCCAATTGCTAC 57.545 40.909 0.00 0.00 42.00 3.58
4636 4849 2.378038 TCCATTGCCAATTGCTACTCC 58.622 47.619 0.00 0.00 42.00 3.85
4658 4871 7.233553 ACTCCCTCGATGTATCTGAATATTTGA 59.766 37.037 0.00 0.00 0.00 2.69
4702 4915 7.916977 CCTTACATGTTCATGTATTGAATGTGG 59.083 37.037 21.20 11.96 45.77 4.17
4740 4953 7.834068 TGAATAATGTGCTTAGTTCAGAGAC 57.166 36.000 0.00 0.00 0.00 3.36
4741 4954 7.386059 TGAATAATGTGCTTAGTTCAGAGACA 58.614 34.615 0.00 0.00 0.00 3.41
4742 4955 8.043113 TGAATAATGTGCTTAGTTCAGAGACAT 58.957 33.333 0.00 0.00 0.00 3.06
4743 4956 9.534565 GAATAATGTGCTTAGTTCAGAGACATA 57.465 33.333 0.00 0.00 0.00 2.29
4752 5002 3.199508 AGTTCAGAGACATATTGGCTGCT 59.800 43.478 0.00 0.00 34.53 4.24
4754 5004 2.133553 CAGAGACATATTGGCTGCTCG 58.866 52.381 0.00 0.00 34.53 5.03
4819 5074 6.432783 ACTGCAACCATGTTGCTTAAGTAATA 59.567 34.615 26.51 7.23 45.13 0.98
4820 5075 6.851609 TGCAACCATGTTGCTTAAGTAATAG 58.148 36.000 26.51 3.07 45.13 1.73
4821 5076 6.432783 TGCAACCATGTTGCTTAAGTAATAGT 59.567 34.615 26.51 0.00 45.13 2.12
4822 5077 7.608376 TGCAACCATGTTGCTTAAGTAATAGTA 59.392 33.333 26.51 4.97 45.13 1.82
4823 5078 7.908601 GCAACCATGTTGCTTAAGTAATAGTAC 59.091 37.037 21.26 0.00 41.87 2.73
4824 5079 9.162764 CAACCATGTTGCTTAAGTAATAGTACT 57.837 33.333 9.31 0.00 42.66 2.73
4826 5081 9.813446 ACCATGTTGCTTAAGTAATAGTACTAC 57.187 33.333 9.31 0.00 39.79 2.73
4842 5097 8.754991 ATAGTACTACTACAATGCTCTTGAGT 57.245 34.615 4.31 7.74 32.84 3.41
4932 5187 3.669251 ACTGGAGTAACAGCTCAACTC 57.331 47.619 10.00 10.00 42.21 3.01
5000 5256 3.248043 TGGCACAACACTCATAGCC 57.752 52.632 0.00 0.00 42.32 3.93
5002 5258 1.089920 GGCACAACACTCATAGCCTG 58.910 55.000 0.00 0.00 39.02 4.85
5019 5330 2.539476 CCTGGAACAAAGTGTGCAAAC 58.461 47.619 0.00 0.00 38.70 2.93
5022 5333 2.300152 TGGAACAAAGTGTGCAAACCAA 59.700 40.909 2.53 0.00 31.92 3.67
5031 5342 2.481952 GTGTGCAAACCAAAACAGCAAA 59.518 40.909 0.00 0.00 36.91 3.68
5034 5345 2.740981 TGCAAACCAAAACAGCAAAGTG 59.259 40.909 0.00 0.00 31.42 3.16
5035 5346 2.095692 GCAAACCAAAACAGCAAAGTGG 59.904 45.455 0.00 0.00 35.39 4.00
5041 5352 3.119173 CCAAAACAGCAAAGTGGTCTTGA 60.119 43.478 0.00 0.00 33.79 3.02
5084 5395 5.352846 TCACGACAACTCTGTTGATGAAAAA 59.647 36.000 16.04 0.00 39.06 1.94
5153 5468 1.072505 GAAACTGGAAGGCGGTGGA 59.927 57.895 0.00 0.00 39.30 4.02
5197 5512 4.142293 CCTGAATTTAAAGAAGCCAGCTCC 60.142 45.833 0.00 0.00 0.00 4.70
5208 5523 1.298993 CCAGCTCCTGCACTGTGAT 59.701 57.895 12.86 0.00 42.74 3.06
5209 5524 0.743701 CCAGCTCCTGCACTGTGATC 60.744 60.000 12.86 0.00 42.74 2.92
5211 5526 0.036577 AGCTCCTGCACTGTGATCAC 60.037 55.000 19.27 19.27 42.74 3.06
5212 5527 0.036577 GCTCCTGCACTGTGATCACT 60.037 55.000 25.55 4.51 39.41 3.41
5213 5528 1.723220 CTCCTGCACTGTGATCACTG 58.277 55.000 25.93 25.93 36.50 3.66
5214 5529 0.322648 TCCTGCACTGTGATCACTGG 59.677 55.000 29.34 21.89 35.00 4.00
5215 5530 0.322648 CCTGCACTGTGATCACTGGA 59.677 55.000 29.34 19.50 35.00 3.86
5216 5531 1.436600 CTGCACTGTGATCACTGGAC 58.563 55.000 29.34 22.20 35.00 4.02
5217 5532 0.758123 TGCACTGTGATCACTGGACA 59.242 50.000 29.34 23.99 35.00 4.02
5218 5533 1.140652 TGCACTGTGATCACTGGACAA 59.859 47.619 29.34 13.97 35.00 3.18
5219 5534 2.221169 GCACTGTGATCACTGGACAAA 58.779 47.619 29.34 8.37 35.00 2.83
5221 5536 2.549754 CACTGTGATCACTGGACAAACC 59.450 50.000 29.34 2.15 39.54 3.27
5233 5570 4.365514 TGGACAAACCAGAGCATTCTTA 57.634 40.909 0.00 0.00 44.64 2.10
5261 5598 7.101700 CCATTGATGATTCTCTATCCATCGAA 58.898 38.462 0.00 0.00 31.87 3.71
5285 5622 5.962433 AGATTTTGTGCTTCTGATGATTGG 58.038 37.500 0.00 0.00 0.00 3.16
5304 5641 5.627499 TTGGACTGAACACTTTCATATGC 57.373 39.130 0.00 0.00 41.05 3.14
5307 5644 3.356290 ACTGAACACTTTCATATGCCCC 58.644 45.455 0.00 0.00 41.05 5.80
5308 5645 2.689983 CTGAACACTTTCATATGCCCCC 59.310 50.000 0.00 0.00 41.05 5.40
5348 5685 5.126545 TCAATCAATTCATTCAGCTTGGGAG 59.873 40.000 0.00 0.00 0.00 4.30
5366 5703 3.306641 GGGAGCATCATACCAGAGCTAAG 60.307 52.174 0.00 0.00 36.25 2.18
5368 5705 4.305769 GAGCATCATACCAGAGCTAAGTG 58.694 47.826 0.00 0.00 35.36 3.16
5390 5727 4.462483 TGACAGTGGAAAAGATAAATGGGC 59.538 41.667 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.754618 ACACGTACAGAAATGAAAGCATGA 59.245 37.500 0.00 0.00 34.26 3.07
9 10 4.668576 AGATGCAACACGTACAGAAATG 57.331 40.909 0.00 0.00 0.00 2.32
40 44 5.190925 ACATTTAACATGGGCCTAGTACTGA 59.809 40.000 5.39 0.00 0.00 3.41
41 45 5.296780 CACATTTAACATGGGCCTAGTACTG 59.703 44.000 5.39 0.00 0.00 2.74
53 59 7.201342 CGCTGGTAAAATCACACATTTAACATG 60.201 37.037 0.00 0.00 37.87 3.21
54 60 6.806249 CGCTGGTAAAATCACACATTTAACAT 59.194 34.615 0.00 0.00 37.87 2.71
55 61 6.146216 CGCTGGTAAAATCACACATTTAACA 58.854 36.000 0.00 0.00 36.60 2.41
56 62 5.571357 CCGCTGGTAAAATCACACATTTAAC 59.429 40.000 0.00 0.00 30.99 2.01
57 63 5.473846 TCCGCTGGTAAAATCACACATTTAA 59.526 36.000 0.00 0.00 0.00 1.52
58 64 5.004448 TCCGCTGGTAAAATCACACATTTA 58.996 37.500 0.00 0.00 0.00 1.40
59 65 3.823873 TCCGCTGGTAAAATCACACATTT 59.176 39.130 0.00 0.00 0.00 2.32
60 66 3.417101 TCCGCTGGTAAAATCACACATT 58.583 40.909 0.00 0.00 0.00 2.71
75 81 1.501741 CGTTTGGGATGTTCCGCTG 59.498 57.895 0.00 0.00 37.43 5.18
97 103 1.632046 GGACGCGCAAATTCGGAAGA 61.632 55.000 5.73 0.00 39.20 2.87
105 111 0.107410 TTATGGGAGGACGCGCAAAT 60.107 50.000 5.73 0.00 34.27 2.32
123 129 4.021104 GGGCAGCTGGAGTTTCTTTTATTT 60.021 41.667 17.12 0.00 0.00 1.40
126 132 2.514803 GGGCAGCTGGAGTTTCTTTTA 58.485 47.619 17.12 0.00 0.00 1.52
131 137 2.543067 ATCCGGGCAGCTGGAGTTTC 62.543 60.000 17.12 0.00 37.76 2.78
133 139 3.011517 ATCCGGGCAGCTGGAGTT 61.012 61.111 17.12 0.00 37.76 3.01
134 140 3.790437 CATCCGGGCAGCTGGAGT 61.790 66.667 17.12 0.00 37.76 3.85
203 228 0.184451 TAGAGGATACGTTCCCGCCT 59.816 55.000 11.61 9.71 46.81 5.52
205 230 1.406539 TGTTAGAGGATACGTTCCCGC 59.593 52.381 11.61 7.20 46.81 6.13
206 231 3.317149 TGATGTTAGAGGATACGTTCCCG 59.683 47.826 11.61 0.00 46.81 5.14
207 232 4.618965 GTGATGTTAGAGGATACGTTCCC 58.381 47.826 11.61 5.65 46.81 3.97
209 234 5.165911 TCGTGATGTTAGAGGATACGTTC 57.834 43.478 0.00 0.00 46.39 3.95
210 235 5.571784 TTCGTGATGTTAGAGGATACGTT 57.428 39.130 0.00 0.00 46.39 3.99
211 236 5.450137 CCTTTCGTGATGTTAGAGGATACGT 60.450 44.000 0.00 0.00 46.39 3.57
212 237 4.976731 CCTTTCGTGATGTTAGAGGATACG 59.023 45.833 0.00 0.00 46.39 3.06
213 238 6.145338 TCCTTTCGTGATGTTAGAGGATAC 57.855 41.667 0.00 0.00 0.00 2.24
214 239 6.749139 CATCCTTTCGTGATGTTAGAGGATA 58.251 40.000 0.00 0.00 39.77 2.59
215 240 5.605534 CATCCTTTCGTGATGTTAGAGGAT 58.394 41.667 0.00 0.00 41.82 3.24
216 241 5.011090 CATCCTTTCGTGATGTTAGAGGA 57.989 43.478 0.00 0.00 35.86 3.71
224 249 5.120208 AGTTTCGTAACATCCTTTCGTGATG 59.880 40.000 7.69 0.00 44.13 3.07
225 250 5.235516 AGTTTCGTAACATCCTTTCGTGAT 58.764 37.500 7.69 0.00 36.70 3.06
226 251 4.624015 AGTTTCGTAACATCCTTTCGTGA 58.376 39.130 7.69 0.00 36.70 4.35
227 252 4.985044 AGTTTCGTAACATCCTTTCGTG 57.015 40.909 7.69 0.00 36.70 4.35
228 253 5.531634 TGTAGTTTCGTAACATCCTTTCGT 58.468 37.500 7.69 0.00 36.70 3.85
229 254 5.632347 ACTGTAGTTTCGTAACATCCTTTCG 59.368 40.000 7.69 0.00 36.70 3.46
230 255 6.423001 ACACTGTAGTTTCGTAACATCCTTTC 59.577 38.462 7.69 0.00 36.70 2.62
231 256 6.285990 ACACTGTAGTTTCGTAACATCCTTT 58.714 36.000 7.69 0.00 36.70 3.11
232 257 5.850614 ACACTGTAGTTTCGTAACATCCTT 58.149 37.500 7.69 0.00 36.70 3.36
233 258 5.464030 ACACTGTAGTTTCGTAACATCCT 57.536 39.130 7.69 0.00 36.70 3.24
234 259 7.642071 TTTACACTGTAGTTTCGTAACATCC 57.358 36.000 7.69 0.00 36.70 3.51
235 260 9.737025 GAATTTACACTGTAGTTTCGTAACATC 57.263 33.333 7.69 0.82 36.70 3.06
236 261 9.263538 TGAATTTACACTGTAGTTTCGTAACAT 57.736 29.630 7.69 0.00 36.70 2.71
237 262 8.645730 TGAATTTACACTGTAGTTTCGTAACA 57.354 30.769 7.69 0.00 36.70 2.41
238 263 8.758715 ACTGAATTTACACTGTAGTTTCGTAAC 58.241 33.333 0.00 0.00 34.36 2.50
239 264 8.757789 CACTGAATTTACACTGTAGTTTCGTAA 58.242 33.333 7.90 0.00 0.00 3.18
240 265 7.095940 GCACTGAATTTACACTGTAGTTTCGTA 60.096 37.037 7.90 0.00 0.00 3.43
241 266 6.292703 GCACTGAATTTACACTGTAGTTTCGT 60.293 38.462 7.90 6.71 0.00 3.85
242 267 6.071463 GCACTGAATTTACACTGTAGTTTCG 58.929 40.000 7.90 0.00 0.00 3.46
243 268 6.954944 TGCACTGAATTTACACTGTAGTTTC 58.045 36.000 0.00 6.37 0.00 2.78
244 269 6.935741 TGCACTGAATTTACACTGTAGTTT 57.064 33.333 0.00 0.00 0.00 2.66
245 270 6.935741 TTGCACTGAATTTACACTGTAGTT 57.064 33.333 0.00 0.00 0.00 2.24
246 271 6.935741 TTTGCACTGAATTTACACTGTAGT 57.064 33.333 0.00 0.00 0.00 2.73
268 293 9.136323 AGTAACCATGACATCTCTTTTCTTTTT 57.864 29.630 0.00 0.00 0.00 1.94
269 294 8.571336 CAGTAACCATGACATCTCTTTTCTTTT 58.429 33.333 0.00 0.00 0.00 2.27
270 295 7.721399 ACAGTAACCATGACATCTCTTTTCTTT 59.279 33.333 0.00 0.00 0.00 2.52
271 296 7.227156 ACAGTAACCATGACATCTCTTTTCTT 58.773 34.615 0.00 0.00 0.00 2.52
272 297 6.773638 ACAGTAACCATGACATCTCTTTTCT 58.226 36.000 0.00 0.00 0.00 2.52
273 298 7.201565 GCTACAGTAACCATGACATCTCTTTTC 60.202 40.741 0.00 0.00 0.00 2.29
274 299 6.595716 GCTACAGTAACCATGACATCTCTTTT 59.404 38.462 0.00 0.00 0.00 2.27
275 300 6.109359 GCTACAGTAACCATGACATCTCTTT 58.891 40.000 0.00 0.00 0.00 2.52
276 301 5.187772 TGCTACAGTAACCATGACATCTCTT 59.812 40.000 0.00 0.00 0.00 2.85
277 302 4.711846 TGCTACAGTAACCATGACATCTCT 59.288 41.667 0.00 0.00 0.00 3.10
278 303 5.011090 TGCTACAGTAACCATGACATCTC 57.989 43.478 0.00 0.00 0.00 2.75
279 304 5.420725 TTGCTACAGTAACCATGACATCT 57.579 39.130 0.00 0.00 0.00 2.90
280 305 7.442364 ACATATTGCTACAGTAACCATGACATC 59.558 37.037 0.00 0.00 0.00 3.06
281 306 7.282585 ACATATTGCTACAGTAACCATGACAT 58.717 34.615 0.00 0.00 0.00 3.06
282 307 6.649155 ACATATTGCTACAGTAACCATGACA 58.351 36.000 0.00 0.00 0.00 3.58
283 308 7.926555 AGTACATATTGCTACAGTAACCATGAC 59.073 37.037 0.00 0.00 0.00 3.06
284 309 7.926018 CAGTACATATTGCTACAGTAACCATGA 59.074 37.037 0.00 0.00 0.00 3.07
285 310 7.710907 ACAGTACATATTGCTACAGTAACCATG 59.289 37.037 0.00 0.00 0.00 3.66
286 311 7.792032 ACAGTACATATTGCTACAGTAACCAT 58.208 34.615 0.00 0.00 0.00 3.55
287 312 7.177832 ACAGTACATATTGCTACAGTAACCA 57.822 36.000 0.00 0.00 0.00 3.67
288 313 8.627403 TCTACAGTACATATTGCTACAGTAACC 58.373 37.037 0.00 0.00 0.00 2.85
292 317 8.750298 ACTTTCTACAGTACATATTGCTACAGT 58.250 33.333 0.00 0.00 0.00 3.55
293 318 9.587772 AACTTTCTACAGTACATATTGCTACAG 57.412 33.333 0.00 0.00 0.00 2.74
297 322 9.587772 CAGTAACTTTCTACAGTACATATTGCT 57.412 33.333 0.00 0.00 0.00 3.91
298 323 9.367444 ACAGTAACTTTCTACAGTACATATTGC 57.633 33.333 0.00 0.00 0.00 3.56
337 362 9.944663 GGTGCAATAAAATCGAACTCATATTTA 57.055 29.630 0.00 0.00 0.00 1.40
338 363 7.643764 CGGTGCAATAAAATCGAACTCATATTT 59.356 33.333 0.00 0.00 0.00 1.40
339 364 7.132213 CGGTGCAATAAAATCGAACTCATATT 58.868 34.615 0.00 0.00 0.00 1.28
340 365 6.658831 CGGTGCAATAAAATCGAACTCATAT 58.341 36.000 0.00 0.00 0.00 1.78
341 366 5.503357 GCGGTGCAATAAAATCGAACTCATA 60.503 40.000 0.00 0.00 0.00 2.15
342 367 4.730613 GCGGTGCAATAAAATCGAACTCAT 60.731 41.667 0.00 0.00 0.00 2.90
343 368 3.425625 GCGGTGCAATAAAATCGAACTCA 60.426 43.478 0.00 0.00 0.00 3.41
344 369 3.098636 GCGGTGCAATAAAATCGAACTC 58.901 45.455 0.00 0.00 0.00 3.01
345 370 2.486203 TGCGGTGCAATAAAATCGAACT 59.514 40.909 0.00 0.00 34.76 3.01
346 371 2.857618 TGCGGTGCAATAAAATCGAAC 58.142 42.857 0.00 0.00 34.76 3.95
347 372 3.560902 TTGCGGTGCAATAAAATCGAA 57.439 38.095 0.00 0.00 43.99 3.71
358 383 2.015736 ACAAACAAAATTGCGGTGCA 57.984 40.000 0.00 0.00 36.47 4.57
359 384 3.492756 ACATACAAACAAAATTGCGGTGC 59.507 39.130 0.00 0.00 33.52 5.01
360 385 6.755461 TTACATACAAACAAAATTGCGGTG 57.245 33.333 0.00 0.00 33.52 4.94
361 386 7.954788 AATTACATACAAACAAAATTGCGGT 57.045 28.000 0.00 0.00 33.52 5.68
362 387 9.657121 AAAAATTACATACAAACAAAATTGCGG 57.343 25.926 0.00 0.00 33.52 5.69
439 464 9.376075 CTTCTTCATATTCATATGATTACGGCT 57.624 33.333 6.17 0.00 45.99 5.52
440 465 8.607459 CCTTCTTCATATTCATATGATTACGGC 58.393 37.037 6.17 0.00 45.99 5.68
441 466 9.102757 CCCTTCTTCATATTCATATGATTACGG 57.897 37.037 6.17 8.19 45.99 4.02
442 467 9.875691 TCCCTTCTTCATATTCATATGATTACG 57.124 33.333 6.17 0.29 45.99 3.18
446 471 9.902684 GACATCCCTTCTTCATATTCATATGAT 57.097 33.333 6.17 0.00 45.99 2.45
447 472 8.883302 TGACATCCCTTCTTCATATTCATATGA 58.117 33.333 0.00 0.00 45.31 2.15
448 473 9.163899 CTGACATCCCTTCTTCATATTCATATG 57.836 37.037 0.00 0.00 41.10 1.78
449 474 8.327271 CCTGACATCCCTTCTTCATATTCATAT 58.673 37.037 0.00 0.00 0.00 1.78
450 475 7.293299 ACCTGACATCCCTTCTTCATATTCATA 59.707 37.037 0.00 0.00 0.00 2.15
451 476 6.102321 ACCTGACATCCCTTCTTCATATTCAT 59.898 38.462 0.00 0.00 0.00 2.57
452 477 5.429762 ACCTGACATCCCTTCTTCATATTCA 59.570 40.000 0.00 0.00 0.00 2.57
453 478 5.934781 ACCTGACATCCCTTCTTCATATTC 58.065 41.667 0.00 0.00 0.00 1.75
454 479 5.983333 ACCTGACATCCCTTCTTCATATT 57.017 39.130 0.00 0.00 0.00 1.28
455 480 6.042552 CAGTACCTGACATCCCTTCTTCATAT 59.957 42.308 0.00 0.00 32.44 1.78
456 481 5.363868 CAGTACCTGACATCCCTTCTTCATA 59.636 44.000 0.00 0.00 32.44 2.15
457 482 4.163078 CAGTACCTGACATCCCTTCTTCAT 59.837 45.833 0.00 0.00 32.44 2.57
458 483 3.515502 CAGTACCTGACATCCCTTCTTCA 59.484 47.826 0.00 0.00 32.44 3.02
459 484 3.515901 ACAGTACCTGACATCCCTTCTTC 59.484 47.826 0.00 0.00 35.18 2.87
460 485 3.521727 ACAGTACCTGACATCCCTTCTT 58.478 45.455 0.00 0.00 35.18 2.52
461 486 3.191888 ACAGTACCTGACATCCCTTCT 57.808 47.619 0.00 0.00 35.18 2.85
462 487 4.466726 AGTTACAGTACCTGACATCCCTTC 59.533 45.833 0.00 0.00 35.18 3.46
463 488 4.426704 AGTTACAGTACCTGACATCCCTT 58.573 43.478 0.00 0.00 35.18 3.95
464 489 4.062490 AGTTACAGTACCTGACATCCCT 57.938 45.455 0.00 0.00 35.18 4.20
465 490 4.382793 GGAAGTTACAGTACCTGACATCCC 60.383 50.000 0.00 0.00 35.18 3.85
466 491 4.382793 GGGAAGTTACAGTACCTGACATCC 60.383 50.000 0.00 0.00 35.18 3.51
467 492 4.466726 AGGGAAGTTACAGTACCTGACATC 59.533 45.833 0.00 0.00 35.18 3.06
468 493 4.426704 AGGGAAGTTACAGTACCTGACAT 58.573 43.478 0.00 0.00 35.18 3.06
469 494 3.853207 AGGGAAGTTACAGTACCTGACA 58.147 45.455 0.00 0.00 35.18 3.58
470 495 4.617762 CGAAGGGAAGTTACAGTACCTGAC 60.618 50.000 0.00 0.00 35.18 3.51
471 496 3.508793 CGAAGGGAAGTTACAGTACCTGA 59.491 47.826 0.00 0.00 35.18 3.86
472 497 3.257624 ACGAAGGGAAGTTACAGTACCTG 59.742 47.826 0.00 0.00 37.52 4.00
473 498 3.257624 CACGAAGGGAAGTTACAGTACCT 59.742 47.826 0.00 0.00 0.00 3.08
474 499 3.256631 TCACGAAGGGAAGTTACAGTACC 59.743 47.826 0.00 0.00 0.00 3.34
475 500 4.510038 TCACGAAGGGAAGTTACAGTAC 57.490 45.455 0.00 0.00 0.00 2.73
476 501 4.525487 ACATCACGAAGGGAAGTTACAGTA 59.475 41.667 0.00 0.00 0.00 2.74
477 502 3.323979 ACATCACGAAGGGAAGTTACAGT 59.676 43.478 0.00 0.00 0.00 3.55
478 503 3.926616 ACATCACGAAGGGAAGTTACAG 58.073 45.455 0.00 0.00 0.00 2.74
479 504 4.345859 AACATCACGAAGGGAAGTTACA 57.654 40.909 0.00 0.00 0.00 2.41
480 505 5.717119 TCTAACATCACGAAGGGAAGTTAC 58.283 41.667 0.00 0.00 29.98 2.50
481 506 5.105473 CCTCTAACATCACGAAGGGAAGTTA 60.105 44.000 0.00 1.13 29.98 2.24
482 507 4.322801 CCTCTAACATCACGAAGGGAAGTT 60.323 45.833 0.00 0.00 31.86 2.66
483 508 3.195825 CCTCTAACATCACGAAGGGAAGT 59.804 47.826 0.00 0.00 0.00 3.01
484 509 3.447586 TCCTCTAACATCACGAAGGGAAG 59.552 47.826 0.00 0.00 0.00 3.46
485 510 3.437213 TCCTCTAACATCACGAAGGGAA 58.563 45.455 0.00 0.00 0.00 3.97
486 511 3.095912 TCCTCTAACATCACGAAGGGA 57.904 47.619 0.00 0.00 0.00 4.20
487 512 3.639094 AGATCCTCTAACATCACGAAGGG 59.361 47.826 0.00 0.00 0.00 3.95
488 513 4.555708 CGAGATCCTCTAACATCACGAAGG 60.556 50.000 0.00 0.00 35.79 3.46
489 514 4.035792 ACGAGATCCTCTAACATCACGAAG 59.964 45.833 5.88 0.00 36.82 3.79
490 515 3.945921 ACGAGATCCTCTAACATCACGAA 59.054 43.478 5.88 0.00 36.82 3.85
491 516 3.542648 ACGAGATCCTCTAACATCACGA 58.457 45.455 5.88 0.00 36.82 4.35
492 517 3.972950 ACGAGATCCTCTAACATCACG 57.027 47.619 0.00 0.00 38.56 4.35
493 518 4.612943 GGAACGAGATCCTCTAACATCAC 58.387 47.826 0.00 0.00 36.50 3.06
494 519 4.920640 GGAACGAGATCCTCTAACATCA 57.079 45.455 0.00 0.00 36.50 3.07
523 548 4.020617 GGCTTTTGGGGCCCTTGC 62.021 66.667 25.93 20.52 43.49 4.01
529 554 2.919328 ACTGCTGGCTTTTGGGGC 60.919 61.111 0.00 0.00 0.00 5.80
646 693 3.344215 CATCTCGGATGCTGCGGC 61.344 66.667 11.65 11.65 39.26 6.53
647 694 3.344215 GCATCTCGGATGCTGCGG 61.344 66.667 23.41 0.00 41.52 5.69
652 699 1.099879 AGGCAAAGCATCTCGGATGC 61.100 55.000 23.31 23.31 44.85 3.91
675 742 0.101219 AACGCGGAGGTATTACGGTC 59.899 55.000 12.47 0.00 0.00 4.79
683 750 3.574614 GTTTAGTGTAAACGCGGAGGTA 58.425 45.455 12.47 0.00 38.69 3.08
706 791 2.032528 TGCTGCTGTACTGTGGCC 59.967 61.111 0.00 0.00 0.00 5.36
709 794 0.881600 TGTGCTGCTGCTGTACTGTG 60.882 55.000 23.26 0.00 40.48 3.66
716 801 2.648320 GATGCGATGTGCTGCTGCTG 62.648 60.000 17.00 0.77 46.63 4.41
717 802 2.437895 ATGCGATGTGCTGCTGCT 60.438 55.556 17.00 0.00 46.63 4.24
718 803 2.024305 GATGCGATGTGCTGCTGC 59.976 61.111 8.89 8.89 46.63 5.25
719 804 2.323447 CGATGCGATGTGCTGCTG 59.677 61.111 0.00 0.00 46.63 4.41
720 805 3.570638 GCGATGCGATGTGCTGCT 61.571 61.111 0.00 0.00 46.63 4.24
793 892 3.303406 GCTGCTGCTGACAAAACTAAAG 58.697 45.455 10.92 0.00 36.03 1.85
794 893 2.034558 GGCTGCTGCTGACAAAACTAAA 59.965 45.455 15.64 0.00 39.59 1.85
796 895 1.238439 GGCTGCTGCTGACAAAACTA 58.762 50.000 15.64 0.00 39.59 2.24
797 896 0.752743 TGGCTGCTGCTGACAAAACT 60.753 50.000 13.01 0.00 39.59 2.66
798 897 0.316204 ATGGCTGCTGCTGACAAAAC 59.684 50.000 19.16 0.00 39.59 2.43
799 898 1.042229 AATGGCTGCTGCTGACAAAA 58.958 45.000 19.16 0.00 39.59 2.44
800 899 0.315886 CAATGGCTGCTGCTGACAAA 59.684 50.000 19.16 0.00 39.59 2.83
801 900 1.961378 CAATGGCTGCTGCTGACAA 59.039 52.632 19.16 3.23 39.59 3.18
802 901 3.676216 CAATGGCTGCTGCTGACA 58.324 55.556 17.63 17.63 39.59 3.58
919 1018 1.294986 TGGGAGAGGAATGGATCTGGA 59.705 52.381 0.00 0.00 0.00 3.86
978 1089 4.168291 CCCTGCCCTTCCGAGCTC 62.168 72.222 2.73 2.73 0.00 4.09
1023 1134 1.752198 CAAGGACCCGAGAACCACA 59.248 57.895 0.00 0.00 0.00 4.17
1027 1138 1.003718 CCACCAAGGACCCGAGAAC 60.004 63.158 0.00 0.00 41.22 3.01
1029 1140 2.606519 CCCACCAAGGACCCGAGA 60.607 66.667 0.00 0.00 41.22 4.04
1146 1257 3.838271 GCCGCGGACTGGATGAGA 61.838 66.667 33.48 0.00 0.00 3.27
1216 1327 8.809159 TTACAGTACTACTCTACTAGCATACG 57.191 38.462 0.00 0.00 0.00 3.06
1249 1360 8.570068 AGAAAGAATATTACTACCGGCAAAAA 57.430 30.769 0.00 0.00 0.00 1.94
1251 1362 7.608761 ACAAGAAAGAATATTACTACCGGCAAA 59.391 33.333 0.00 0.00 0.00 3.68
1252 1363 7.107542 ACAAGAAAGAATATTACTACCGGCAA 58.892 34.615 0.00 0.00 0.00 4.52
1254 1365 7.065443 ACAACAAGAAAGAATATTACTACCGGC 59.935 37.037 0.00 0.00 0.00 6.13
1255 1366 8.488651 ACAACAAGAAAGAATATTACTACCGG 57.511 34.615 0.00 0.00 0.00 5.28
1264 1375 9.415544 GATCTTTGCAACAACAAGAAAGAATAT 57.584 29.630 0.00 0.00 36.51 1.28
1266 1377 6.418819 CGATCTTTGCAACAACAAGAAAGAAT 59.581 34.615 0.00 0.00 36.51 2.40
1303 1414 1.307355 CGGCAAGCATGTGACATGGA 61.307 55.000 25.22 0.00 0.00 3.41
1332 1443 2.831366 GCATCATGCGGCTCACTGG 61.831 63.158 0.00 0.00 31.71 4.00
1344 1455 1.145598 CAGCAGAGACCCGCATCAT 59.854 57.895 0.00 0.00 0.00 2.45
1356 1467 2.574018 CCAGGGTCGACACAGCAGA 61.574 63.158 22.01 0.00 0.00 4.26
1389 1503 7.169308 GGCAATAGCAATCAGATCAGAAAAATG 59.831 37.037 0.00 0.00 44.61 2.32
1432 1546 7.051000 AGGAGAAAAATAGTAGAACATGAGCC 58.949 38.462 0.00 0.00 0.00 4.70
1445 1559 8.482128 AGTGGATACTGAAGAGGAGAAAAATAG 58.518 37.037 0.00 0.00 35.34 1.73
1446 1560 8.380742 AGTGGATACTGAAGAGGAGAAAAATA 57.619 34.615 0.00 0.00 35.34 1.40
1447 1561 7.264294 AGTGGATACTGAAGAGGAGAAAAAT 57.736 36.000 0.00 0.00 35.34 1.82
1448 1562 6.688073 AGTGGATACTGAAGAGGAGAAAAA 57.312 37.500 0.00 0.00 35.34 1.94
1449 1563 6.688073 AAGTGGATACTGAAGAGGAGAAAA 57.312 37.500 0.00 0.00 37.19 2.29
1450 1564 6.127310 GCTAAGTGGATACTGAAGAGGAGAAA 60.127 42.308 0.00 0.00 37.19 2.52
1451 1565 5.361285 GCTAAGTGGATACTGAAGAGGAGAA 59.639 44.000 0.00 0.00 37.19 2.87
1452 1566 4.890581 GCTAAGTGGATACTGAAGAGGAGA 59.109 45.833 0.00 0.00 37.19 3.71
1475 1589 5.674525 TCAATCAACATAGCTCCTAAGTGG 58.325 41.667 0.00 0.00 37.10 4.00
1476 1590 6.257411 CACTCAATCAACATAGCTCCTAAGTG 59.743 42.308 0.00 0.00 0.00 3.16
1477 1591 6.155221 TCACTCAATCAACATAGCTCCTAAGT 59.845 38.462 0.00 0.00 0.00 2.24
1478 1592 6.577103 TCACTCAATCAACATAGCTCCTAAG 58.423 40.000 0.00 0.00 0.00 2.18
1479 1593 6.544928 TCACTCAATCAACATAGCTCCTAA 57.455 37.500 0.00 0.00 0.00 2.69
1480 1594 6.324770 TGATCACTCAATCAACATAGCTCCTA 59.675 38.462 0.00 0.00 32.80 2.94
1481 1595 5.129980 TGATCACTCAATCAACATAGCTCCT 59.870 40.000 0.00 0.00 32.80 3.69
1482 1596 5.363101 TGATCACTCAATCAACATAGCTCC 58.637 41.667 0.00 0.00 32.80 4.70
1483 1597 6.566187 GCATGATCACTCAATCAACATAGCTC 60.566 42.308 0.00 0.00 39.04 4.09
1484 1598 5.238868 GCATGATCACTCAATCAACATAGCT 59.761 40.000 0.00 0.00 39.04 3.32
1488 1602 4.948004 ACTGCATGATCACTCAATCAACAT 59.052 37.500 0.00 0.00 39.04 2.71
1497 1611 5.212532 AGGATAAGACTGCATGATCACTC 57.787 43.478 0.00 0.00 0.00 3.51
1528 1645 5.745294 CACATGCTACTTATGCCAAACAATC 59.255 40.000 0.00 0.00 0.00 2.67
1561 1678 8.706936 GCATATATTTATCTAGATCCGCACATG 58.293 37.037 8.95 8.78 0.00 3.21
1562 1679 8.424133 TGCATATATTTATCTAGATCCGCACAT 58.576 33.333 8.95 0.00 0.00 3.21
1563 1680 7.781056 TGCATATATTTATCTAGATCCGCACA 58.219 34.615 8.95 0.00 0.00 4.57
1564 1681 8.706936 CATGCATATATTTATCTAGATCCGCAC 58.293 37.037 8.95 0.00 0.00 5.34
1565 1682 8.424133 ACATGCATATATTTATCTAGATCCGCA 58.576 33.333 8.95 7.91 0.00 5.69
1566 1683 8.706936 CACATGCATATATTTATCTAGATCCGC 58.293 37.037 8.95 2.60 0.00 5.54
1567 1684 9.201127 CCACATGCATATATTTATCTAGATCCG 57.799 37.037 8.95 0.00 0.00 4.18
1633 1750 3.901844 CCCCGAATTAGGTGAGGAGAATA 59.098 47.826 3.75 0.00 0.00 1.75
1699 1816 3.440173 ACCAAGAAATCATGCACGGTTAG 59.560 43.478 0.00 0.00 0.00 2.34
1704 1821 2.414559 GGTGACCAAGAAATCATGCACG 60.415 50.000 0.00 0.00 0.00 5.34
1715 1832 7.581814 TGATATATTTGGAATGGTGACCAAGA 58.418 34.615 9.06 0.00 45.08 3.02
1780 1897 7.667219 AGACTTCAAATCTTGAGCAATTTCCTA 59.333 33.333 0.00 0.00 41.38 2.94
1818 1935 7.584108 TCACAACACACATTTATAAAGCAGAG 58.416 34.615 3.94 0.00 0.00 3.35
1819 1936 7.503521 TCACAACACACATTTATAAAGCAGA 57.496 32.000 3.94 0.00 0.00 4.26
1890 2016 6.892658 TGCTTCTAAAATCCAAAGCAGTTA 57.107 33.333 4.64 0.00 46.61 2.24
1914 2040 8.532977 AGCACAAAATATTTCAACAACCATAC 57.467 30.769 0.10 0.00 0.00 2.39
1918 2044 7.307337 CCTGAAGCACAAAATATTTCAACAACC 60.307 37.037 0.10 0.00 0.00 3.77
2172 2306 2.680841 GGCATTTACAATCCGTAGTGCA 59.319 45.455 11.31 0.00 41.59 4.57
2177 2311 4.814234 CAGCTAAGGCATTTACAATCCGTA 59.186 41.667 0.00 0.00 41.70 4.02
2209 2343 2.620367 CCACCCTGGAATTCGATTTGGA 60.620 50.000 0.00 0.00 40.96 3.53
2291 2425 1.168714 GTTGCCTCTCCATGTGGTTC 58.831 55.000 0.00 0.00 36.34 3.62
2339 2473 5.196695 AGAATACCAGGATTTTCTTCAGGC 58.803 41.667 0.00 0.00 0.00 4.85
2361 2495 7.697691 ACAAGTTCATGACAACTGTTTAGAAG 58.302 34.615 0.00 0.00 36.69 2.85
2368 2502 4.943705 ACAAGACAAGTTCATGACAACTGT 59.056 37.500 0.00 0.00 36.69 3.55
2371 2505 5.235305 ACACAAGACAAGTTCATGACAAC 57.765 39.130 0.00 0.00 0.00 3.32
2377 2515 9.477484 CTACTAAACTACACAAGACAAGTTCAT 57.523 33.333 0.00 0.00 31.15 2.57
2378 2516 8.472413 ACTACTAAACTACACAAGACAAGTTCA 58.528 33.333 0.00 0.00 31.15 3.18
2413 2551 8.934023 ACAGTTATATTCCTCTTTTGGACAAA 57.066 30.769 0.00 0.00 35.58 2.83
2424 2562 6.256757 GCAGAGTGTCAACAGTTATATTCCTC 59.743 42.308 0.00 0.00 0.00 3.71
2442 2580 2.969628 ACGGAAATAGGAGCAGAGTG 57.030 50.000 0.00 0.00 0.00 3.51
2443 2581 3.260884 TCAAACGGAAATAGGAGCAGAGT 59.739 43.478 0.00 0.00 0.00 3.24
2449 2596 5.648092 ACAATTCCTCAAACGGAAATAGGAG 59.352 40.000 0.00 0.00 45.53 3.69
2451 2598 5.897377 ACAATTCCTCAAACGGAAATAGG 57.103 39.130 0.00 0.00 45.53 2.57
2459 2606 5.046910 ACAGCATTACAATTCCTCAAACG 57.953 39.130 0.00 0.00 0.00 3.60
2611 2759 5.017294 TGTTCAAATGAAAAAGGGTCCAC 57.983 39.130 0.00 0.00 35.58 4.02
2617 2765 5.669477 TGGGAACTGTTCAAATGAAAAAGG 58.331 37.500 21.01 0.00 35.58 3.11
2761 2910 3.603158 TCAGAAACGGATCGAATTGGA 57.397 42.857 0.00 0.00 0.00 3.53
2763 2912 7.023575 AGAAAATTCAGAAACGGATCGAATTG 58.976 34.615 15.62 0.00 35.17 2.32
2768 2917 6.603095 AGAAAGAAAATTCAGAAACGGATCG 58.397 36.000 0.00 0.00 0.00 3.69
2907 3056 8.845413 TGCCAAAAGCTAATTACAAAAATGAT 57.155 26.923 0.00 0.00 44.23 2.45
2908 3057 8.668510 TTGCCAAAAGCTAATTACAAAAATGA 57.331 26.923 0.00 0.00 44.23 2.57
3194 3344 3.763360 CCTTAACATGCCATTGAAGTGGA 59.237 43.478 0.00 0.00 42.02 4.02
3229 3379 5.726980 ATGTCAACACTGCAAATGGTAAT 57.273 34.783 2.90 0.00 0.00 1.89
3249 3399 1.011968 TTTCTCGACGACCCGCAATG 61.012 55.000 0.00 0.00 0.00 2.82
3255 3405 1.743958 TCTCTCATTTCTCGACGACCC 59.256 52.381 0.00 0.00 0.00 4.46
3276 3426 4.933505 TCTCACAATGCCATTGAACAAA 57.066 36.364 23.56 2.80 42.83 2.83
3279 3429 3.615496 GCAATCTCACAATGCCATTGAAC 59.385 43.478 23.56 0.77 42.83 3.18
3396 3549 7.715249 GGTTGGCACATGAATACTCTAAGATAA 59.285 37.037 0.00 0.00 39.30 1.75
3397 3550 7.147567 TGGTTGGCACATGAATACTCTAAGATA 60.148 37.037 0.00 0.00 39.30 1.98
3406 3559 3.932545 TTGTGGTTGGCACATGAATAC 57.067 42.857 0.00 0.00 39.30 1.89
3422 3575 8.592155 CAACATCAGCAAAATGAAGATATTGTG 58.408 33.333 0.65 0.00 31.76 3.33
3625 3806 9.496873 TTCAAGATAAAAGTCGGAGTTTGAATA 57.503 29.630 11.35 1.77 29.93 1.75
3661 3842 4.969196 AGCACCTGCCACACGTCG 62.969 66.667 0.00 0.00 43.38 5.12
3664 3845 0.673333 TGATAAGCACCTGCCACACG 60.673 55.000 0.00 0.00 43.38 4.49
3698 3879 8.148807 TCTCAGTCTCGTATCTCTTAAATCAG 57.851 38.462 0.00 0.00 0.00 2.90
3716 3897 6.625873 AATTTGTTTCAGTTCCTCTCAGTC 57.374 37.500 0.00 0.00 0.00 3.51
3742 3938 6.207417 TCTCTTGAAGCTGGAAAAATACAAGG 59.793 38.462 0.00 0.00 35.64 3.61
3766 3962 0.955919 CCGTTCTGGGAGCCAAACTC 60.956 60.000 0.00 0.00 45.45 3.01
3770 3966 3.249189 AGCCGTTCTGGGAGCCAA 61.249 61.111 0.00 0.00 38.63 4.52
3847 4043 9.274065 CGAAGTATACCATTTAAAAACTGAAGC 57.726 33.333 0.00 0.00 0.00 3.86
3865 4061 2.758423 TCTGACAAGGCAGCGAAGTATA 59.242 45.455 0.00 0.00 35.86 1.47
3866 4062 1.550524 TCTGACAAGGCAGCGAAGTAT 59.449 47.619 0.00 0.00 35.86 2.12
3873 4069 2.399916 AGAAGATCTGACAAGGCAGC 57.600 50.000 0.00 0.00 35.86 5.25
3902 4098 4.459337 TCAATCTACTCTTTCGCTGACAGA 59.541 41.667 6.65 0.00 0.00 3.41
3905 4101 5.807520 TCATTCAATCTACTCTTTCGCTGAC 59.192 40.000 0.00 0.00 0.00 3.51
3909 4105 6.145371 GGAGATCATTCAATCTACTCTTTCGC 59.855 42.308 0.00 0.00 36.13 4.70
3911 4107 7.734942 AGGGAGATCATTCAATCTACTCTTTC 58.265 38.462 0.00 0.00 36.90 2.62
3912 4108 7.688918 AGGGAGATCATTCAATCTACTCTTT 57.311 36.000 0.00 0.00 36.90 2.52
3925 4121 7.571919 CCTGCATTATACATAGGGAGATCATT 58.428 38.462 0.00 0.00 0.00 2.57
3926 4122 6.409005 GCCTGCATTATACATAGGGAGATCAT 60.409 42.308 0.00 0.00 0.00 2.45
3990 4190 2.615465 CCCATTCTGCCCTGACCCA 61.615 63.158 0.00 0.00 0.00 4.51
4011 4211 4.023536 TGGGCGAAACAAGAGTTGATAAAC 60.024 41.667 0.00 0.00 38.17 2.01
4032 4232 2.183811 CTCTCGCTCTGGCAGTGG 59.816 66.667 15.27 9.88 38.60 4.00
4035 4235 1.139308 CTGTCTCTCGCTCTGGCAG 59.861 63.158 8.58 8.58 38.60 4.85
4068 4268 1.001406 CCAAGACGAGGAGACTTGCTT 59.999 52.381 0.00 0.00 46.30 3.91
4074 4274 0.033504 TGTTGCCAAGACGAGGAGAC 59.966 55.000 0.00 0.00 0.00 3.36
4217 4419 4.384846 CAGCTGACTTTTCATGCAATTGAC 59.615 41.667 8.42 1.02 31.79 3.18
4230 4432 1.545651 GGCTAACCACCAGCTGACTTT 60.546 52.381 17.39 5.20 39.09 2.66
4390 4595 3.527507 TCGTATTAGAGATGCCTCCCT 57.472 47.619 0.00 0.00 40.30 4.20
4453 4658 1.868469 TTTTCGGTTGTACCCACTCG 58.132 50.000 0.00 0.00 33.75 4.18
4535 4742 1.211457 GGCCCTGCCCTATCATATCTG 59.789 57.143 0.00 0.00 44.06 2.90
4558 4770 0.955428 ACCTCATCGCGTTTGCATGT 60.955 50.000 5.77 1.05 42.97 3.21
4570 4782 3.460857 AATAACGCAGAGGACCTCATC 57.539 47.619 23.60 12.79 32.06 2.92
4572 4784 3.695830 AAAATAACGCAGAGGACCTCA 57.304 42.857 23.60 1.60 32.06 3.86
4577 4789 8.958119 ATATGAAACTAAAATAACGCAGAGGA 57.042 30.769 0.00 0.00 0.00 3.71
4600 4812 5.637810 GGCAATGGAAAGAATCGACGATATA 59.362 40.000 11.42 0.00 0.00 0.86
4633 4846 7.606349 TCAAATATTCAGATACATCGAGGGAG 58.394 38.462 0.69 0.00 0.00 4.30
4636 4849 7.657354 TGGTTCAAATATTCAGATACATCGAGG 59.343 37.037 0.00 0.00 0.00 4.63
4739 4952 2.009774 GTTCACGAGCAGCCAATATGT 58.990 47.619 0.00 0.00 0.00 2.29
4740 4953 2.031314 CAGTTCACGAGCAGCCAATATG 59.969 50.000 0.00 0.00 0.00 1.78
4741 4954 2.283298 CAGTTCACGAGCAGCCAATAT 58.717 47.619 0.00 0.00 0.00 1.28
4742 4955 1.725641 CAGTTCACGAGCAGCCAATA 58.274 50.000 0.00 0.00 0.00 1.90
4743 4956 1.580845 GCAGTTCACGAGCAGCCAAT 61.581 55.000 0.00 0.00 0.00 3.16
4752 5002 1.330521 GCAGTTTTCAGCAGTTCACGA 59.669 47.619 0.00 0.00 32.46 4.35
4754 5004 2.849880 TGCAGTTTTCAGCAGTTCAC 57.150 45.000 0.00 0.00 37.41 3.18
4819 5074 6.887545 AGACTCAAGAGCATTGTAGTAGTACT 59.112 38.462 8.14 8.14 0.00 2.73
4820 5075 7.090953 AGACTCAAGAGCATTGTAGTAGTAC 57.909 40.000 0.37 0.37 0.00 2.73
4821 5076 8.803397 TTAGACTCAAGAGCATTGTAGTAGTA 57.197 34.615 0.00 0.00 0.00 1.82
4822 5077 7.704578 TTAGACTCAAGAGCATTGTAGTAGT 57.295 36.000 0.00 0.00 0.00 2.73
4823 5078 8.988064 TTTTAGACTCAAGAGCATTGTAGTAG 57.012 34.615 0.00 0.00 0.00 2.57
4958 5213 7.415541 CCATTGTCTTCCATACCATAGTTTGTG 60.416 40.741 0.00 0.00 0.00 3.33
4959 5214 6.603201 CCATTGTCTTCCATACCATAGTTTGT 59.397 38.462 0.00 0.00 0.00 2.83
4960 5215 6.460123 GCCATTGTCTTCCATACCATAGTTTG 60.460 42.308 0.00 0.00 0.00 2.93
4964 5220 4.516698 GTGCCATTGTCTTCCATACCATAG 59.483 45.833 0.00 0.00 0.00 2.23
4969 5225 3.505680 TGTTGTGCCATTGTCTTCCATAC 59.494 43.478 0.00 0.00 0.00 2.39
4988 5244 3.788227 TTGTTCCAGGCTATGAGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
4995 5251 2.162681 GCACACTTTGTTCCAGGCTAT 58.837 47.619 0.00 0.00 0.00 2.97
4997 5253 0.395586 TGCACACTTTGTTCCAGGCT 60.396 50.000 0.00 0.00 0.00 4.58
4998 5254 0.459489 TTGCACACTTTGTTCCAGGC 59.541 50.000 0.00 0.00 0.00 4.85
4999 5255 2.539476 GTTTGCACACTTTGTTCCAGG 58.461 47.619 0.00 0.00 0.00 4.45
5000 5256 2.094286 TGGTTTGCACACTTTGTTCCAG 60.094 45.455 2.52 0.00 0.00 3.86
5002 5258 2.663826 TGGTTTGCACACTTTGTTCC 57.336 45.000 2.52 0.00 0.00 3.62
5019 5330 3.119173 TCAAGACCACTTTGCTGTTTTGG 60.119 43.478 0.00 0.00 33.70 3.28
5022 5333 3.088532 TGTCAAGACCACTTTGCTGTTT 58.911 40.909 0.00 0.00 33.70 2.83
5031 5342 2.030027 TCCAGGATGTCAAGACCACT 57.970 50.000 0.00 0.00 0.00 4.00
5034 5345 6.378280 ACAAAAATATCCAGGATGTCAAGACC 59.622 38.462 12.80 0.00 0.00 3.85
5035 5346 7.396540 ACAAAAATATCCAGGATGTCAAGAC 57.603 36.000 12.80 0.00 0.00 3.01
5041 5352 5.943416 TCGTGAACAAAAATATCCAGGATGT 59.057 36.000 12.80 1.82 0.00 3.06
5197 5512 1.270465 TGTCCAGTGATCACAGTGCAG 60.270 52.381 27.02 7.20 43.70 4.41
5212 5527 2.957402 AGAATGCTCTGGTTTGTCCA 57.043 45.000 0.00 0.00 45.01 4.02
5213 5528 5.240713 CATAAGAATGCTCTGGTTTGTCC 57.759 43.478 0.00 0.00 30.03 4.02
5224 5539 7.309255 GAGAATCATCAATGGCATAAGAATGCT 60.309 37.037 0.00 0.00 46.45 3.79
5233 5570 6.135819 TGGATAGAGAATCATCAATGGCAT 57.864 37.500 0.00 0.00 37.82 4.40
5261 5598 6.209986 TCCAATCATCAGAAGCACAAAATCTT 59.790 34.615 0.00 0.00 0.00 2.40
5272 5609 5.243981 AGTGTTCAGTCCAATCATCAGAAG 58.756 41.667 0.00 0.00 0.00 2.85
5285 5622 3.378427 GGGGCATATGAAAGTGTTCAGTC 59.622 47.826 6.97 0.00 46.75 3.51
5304 5641 3.282885 GAATGCTTGAGTAGAAAGGGGG 58.717 50.000 0.00 0.00 0.00 5.40
5307 5644 6.748333 TGATTGAATGCTTGAGTAGAAAGG 57.252 37.500 0.00 0.00 0.00 3.11
5308 5645 9.286946 GAATTGATTGAATGCTTGAGTAGAAAG 57.713 33.333 0.00 0.00 0.00 2.62
5348 5685 4.054671 GTCACTTAGCTCTGGTATGATGC 58.945 47.826 0.00 0.00 0.00 3.91
5366 5703 5.622233 GCCCATTTATCTTTTCCACTGTCAC 60.622 44.000 0.00 0.00 0.00 3.67
5368 5705 4.142160 GGCCCATTTATCTTTTCCACTGTC 60.142 45.833 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.