Multiple sequence alignment - TraesCS2A01G152900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G152900 chr2A 100.000 3543 0 0 1 3543 100973024 100969482 0.000000e+00 6543.0
1 TraesCS2A01G152900 chr2A 95.869 1162 34 3 2395 3543 736258519 736259679 0.000000e+00 1868.0
2 TraesCS2A01G152900 chr2A 95.455 1166 35 6 2393 3543 3372872 3374034 0.000000e+00 1844.0
3 TraesCS2A01G152900 chr2A 94.668 1069 41 4 2490 3543 95256050 95254983 0.000000e+00 1644.0
4 TraesCS2A01G152900 chr2A 85.778 893 78 21 1354 2215 100826219 100825345 0.000000e+00 900.0
5 TraesCS2A01G152900 chr2A 91.586 309 26 0 1044 1352 100826602 100826294 9.090000e-116 427.0
6 TraesCS2A01G152900 chr2A 90.991 111 7 2 342 450 100827079 100826970 2.850000e-31 147.0
7 TraesCS2A01G152900 chr2D 95.773 1585 53 7 770 2349 101957325 101955750 0.000000e+00 2543.0
8 TraesCS2A01G152900 chr2D 90.470 724 49 11 1498 2215 101872865 101872156 0.000000e+00 937.0
9 TraesCS2A01G152900 chr2D 91.586 309 26 0 1044 1352 101873364 101873056 9.090000e-116 427.0
10 TraesCS2A01G152900 chr2D 90.717 237 20 2 265 501 101958213 101957979 7.380000e-82 315.0
11 TraesCS2A01G152900 chr2D 84.946 186 16 8 265 450 101873900 101873727 1.010000e-40 178.0
12 TraesCS2A01G152900 chr2D 98.246 57 1 0 453 509 101873695 101873639 2.250000e-17 100.0
13 TraesCS2A01G152900 chr3A 96.306 1164 28 4 2394 3543 14861267 14862429 0.000000e+00 1897.0
14 TraesCS2A01G152900 chr3A 95.529 1163 38 3 2394 3543 53013108 53011947 0.000000e+00 1847.0
15 TraesCS2A01G152900 chr4A 95.701 1163 35 3 2394 3543 133723508 133722348 0.000000e+00 1857.0
16 TraesCS2A01G152900 chr1A 95.408 1176 37 6 2384 3543 4159973 4161147 0.000000e+00 1857.0
17 TraesCS2A01G152900 chr1A 95.271 1163 39 4 2394 3543 562075756 562076915 0.000000e+00 1829.0
18 TraesCS2A01G152900 chr1A 95.189 1164 41 4 2394 3543 494071790 494072952 0.000000e+00 1825.0
19 TraesCS2A01G152900 chr1A 94.755 1163 43 6 2394 3543 95310087 95308930 0.000000e+00 1794.0
20 TraesCS2A01G152900 chr1A 93.658 1151 38 11 2394 3543 554579665 554580781 0.000000e+00 1688.0
21 TraesCS2A01G152900 chr1A 92.520 254 13 4 13 265 9254457 9254209 3.360000e-95 359.0
22 TraesCS2A01G152900 chr1A 90.187 214 18 3 54 266 516150002 516150213 3.480000e-70 276.0
23 TraesCS2A01G152900 chr7A 95.443 1163 40 2 2394 3543 69908237 69909399 0.000000e+00 1842.0
24 TraesCS2A01G152900 chr7A 79.245 106 19 3 1509 1611 167179936 167180041 1.760000e-08 71.3
25 TraesCS2A01G152900 chr7A 91.304 46 4 0 1649 1694 653589921 653589966 2.950000e-06 63.9
26 TraesCS2A01G152900 chr5A 94.497 1163 47 5 2394 3543 31062995 31064153 0.000000e+00 1777.0
27 TraesCS2A01G152900 chr5A 90.588 255 15 7 13 264 364528384 364528136 2.640000e-86 329.0
28 TraesCS2A01G152900 chr2B 86.389 720 68 16 1354 2050 153126967 153126255 0.000000e+00 760.0
29 TraesCS2A01G152900 chr2B 88.528 462 37 8 1758 2215 152843900 152843451 2.410000e-151 545.0
30 TraesCS2A01G152900 chr2B 95.455 264 7 3 1104 1366 153127284 153127025 1.970000e-112 416.0
31 TraesCS2A01G152900 chr2B 85.024 414 38 12 1371 1764 152844478 152844069 1.980000e-107 399.0
32 TraesCS2A01G152900 chr2B 90.203 296 19 7 1044 1329 152844869 152844574 9.280000e-101 377.0
33 TraesCS2A01G152900 chr2B 91.429 245 16 5 21 264 728932684 728932444 7.330000e-87 331.0
34 TraesCS2A01G152900 chr2B 83.889 180 13 6 271 450 153127848 153127685 1.320000e-34 158.0
35 TraesCS2A01G152900 chr2B 83.333 180 14 6 271 450 152845389 152845226 6.130000e-33 152.0
36 TraesCS2A01G152900 chr2B 98.246 57 1 0 453 509 152845194 152845138 2.250000e-17 100.0
37 TraesCS2A01G152900 chr3B 92.683 246 14 3 15 258 379341182 379340939 5.630000e-93 351.0
38 TraesCS2A01G152900 chr3B 89.151 212 20 3 54 264 684503262 684503053 9.760000e-66 261.0
39 TraesCS2A01G152900 chr5B 91.200 250 16 5 13 261 710757917 710758161 5.670000e-88 335.0
40 TraesCS2A01G152900 chr6B 89.683 252 19 4 13 261 94140731 94140978 7.380000e-82 315.0
41 TraesCS2A01G152900 chr6D 91.346 208 15 2 54 261 319000074 319000278 7.490000e-72 281.0
42 TraesCS2A01G152900 chr4D 88.830 188 16 3 265 450 498413781 498413597 3.560000e-55 226.0
43 TraesCS2A01G152900 chr7B 80.189 106 18 3 1509 1611 128822328 128822433 3.790000e-10 76.8
44 TraesCS2A01G152900 chr7B 93.478 46 3 0 1649 1694 619592130 619592085 6.350000e-08 69.4
45 TraesCS2A01G152900 chr7D 79.245 106 19 3 1509 1611 165634967 165635072 1.760000e-08 71.3
46 TraesCS2A01G152900 chr7D 89.130 46 5 0 1649 1694 566990124 566990169 1.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G152900 chr2A 100969482 100973024 3542 True 6543.000000 6543 100.000000 1 3543 1 chr2A.!!$R2 3542
1 TraesCS2A01G152900 chr2A 736258519 736259679 1160 False 1868.000000 1868 95.869000 2395 3543 1 chr2A.!!$F2 1148
2 TraesCS2A01G152900 chr2A 3372872 3374034 1162 False 1844.000000 1844 95.455000 2393 3543 1 chr2A.!!$F1 1150
3 TraesCS2A01G152900 chr2A 95254983 95256050 1067 True 1644.000000 1644 94.668000 2490 3543 1 chr2A.!!$R1 1053
4 TraesCS2A01G152900 chr2A 100825345 100827079 1734 True 491.333333 900 89.451667 342 2215 3 chr2A.!!$R3 1873
5 TraesCS2A01G152900 chr2D 101955750 101958213 2463 True 1429.000000 2543 93.245000 265 2349 2 chr2D.!!$R2 2084
6 TraesCS2A01G152900 chr2D 101872156 101873900 1744 True 410.500000 937 91.312000 265 2215 4 chr2D.!!$R1 1950
7 TraesCS2A01G152900 chr3A 14861267 14862429 1162 False 1897.000000 1897 96.306000 2394 3543 1 chr3A.!!$F1 1149
8 TraesCS2A01G152900 chr3A 53011947 53013108 1161 True 1847.000000 1847 95.529000 2394 3543 1 chr3A.!!$R1 1149
9 TraesCS2A01G152900 chr4A 133722348 133723508 1160 True 1857.000000 1857 95.701000 2394 3543 1 chr4A.!!$R1 1149
10 TraesCS2A01G152900 chr1A 4159973 4161147 1174 False 1857.000000 1857 95.408000 2384 3543 1 chr1A.!!$F1 1159
11 TraesCS2A01G152900 chr1A 562075756 562076915 1159 False 1829.000000 1829 95.271000 2394 3543 1 chr1A.!!$F5 1149
12 TraesCS2A01G152900 chr1A 494071790 494072952 1162 False 1825.000000 1825 95.189000 2394 3543 1 chr1A.!!$F2 1149
13 TraesCS2A01G152900 chr1A 95308930 95310087 1157 True 1794.000000 1794 94.755000 2394 3543 1 chr1A.!!$R2 1149
14 TraesCS2A01G152900 chr1A 554579665 554580781 1116 False 1688.000000 1688 93.658000 2394 3543 1 chr1A.!!$F4 1149
15 TraesCS2A01G152900 chr7A 69908237 69909399 1162 False 1842.000000 1842 95.443000 2394 3543 1 chr7A.!!$F1 1149
16 TraesCS2A01G152900 chr5A 31062995 31064153 1158 False 1777.000000 1777 94.497000 2394 3543 1 chr5A.!!$F1 1149
17 TraesCS2A01G152900 chr2B 153126255 153127848 1593 True 444.666667 760 88.577667 271 2050 3 chr2B.!!$R3 1779
18 TraesCS2A01G152900 chr2B 152843451 152845389 1938 True 314.600000 545 89.066800 271 2215 5 chr2B.!!$R2 1944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 555 0.033504 AGCCCACACACACGACTAAG 59.966 55.0 0.00 0.0 0.00 2.18 F
2145 3025 0.101040 GAGCTGTGCTGCAACAACAA 59.899 50.0 2.77 0.0 39.88 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2368 3248 0.036388 GCTGACCAGACCCGAATGAA 60.036 55.0 0.47 0.0 0.00 2.57 R
3007 3904 0.298707 CGAGGAAATGCACGATCACG 59.701 55.0 0.00 0.0 45.75 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.962569 TCACAGAGAACTCCGGCG 59.037 61.111 0.00 0.00 0.00 6.46
18 19 2.811317 CACAGAGAACTCCGGCGC 60.811 66.667 0.00 0.00 0.00 6.53
19 20 4.070552 ACAGAGAACTCCGGCGCC 62.071 66.667 19.07 19.07 0.00 6.53
20 21 4.069232 CAGAGAACTCCGGCGCCA 62.069 66.667 28.98 6.80 0.00 5.69
21 22 3.764466 AGAGAACTCCGGCGCCAG 61.764 66.667 28.98 20.01 0.00 4.85
22 23 3.760035 GAGAACTCCGGCGCCAGA 61.760 66.667 28.98 20.94 0.00 3.86
23 24 3.296709 GAGAACTCCGGCGCCAGAA 62.297 63.158 28.98 9.92 0.00 3.02
24 25 2.815647 GAACTCCGGCGCCAGAAG 60.816 66.667 28.98 21.48 0.00 2.85
25 26 3.296709 GAACTCCGGCGCCAGAAGA 62.297 63.158 28.98 15.85 0.00 2.87
26 27 3.302347 AACTCCGGCGCCAGAAGAG 62.302 63.158 28.98 25.73 0.00 2.85
27 28 3.452786 CTCCGGCGCCAGAAGAGA 61.453 66.667 28.98 11.38 0.00 3.10
28 29 3.423162 CTCCGGCGCCAGAAGAGAG 62.423 68.421 28.98 16.91 0.00 3.20
29 30 4.521062 CCGGCGCCAGAAGAGAGG 62.521 72.222 28.98 13.15 0.00 3.69
30 31 3.452786 CGGCGCCAGAAGAGAGGA 61.453 66.667 28.98 0.00 0.00 3.71
31 32 2.498726 GGCGCCAGAAGAGAGGAG 59.501 66.667 24.80 0.00 0.00 3.69
32 33 2.055042 GGCGCCAGAAGAGAGGAGA 61.055 63.158 24.80 0.00 0.00 3.71
33 34 1.437160 GCGCCAGAAGAGAGGAGAG 59.563 63.158 0.00 0.00 0.00 3.20
34 35 1.034838 GCGCCAGAAGAGAGGAGAGA 61.035 60.000 0.00 0.00 0.00 3.10
35 36 1.024271 CGCCAGAAGAGAGGAGAGAG 58.976 60.000 0.00 0.00 0.00 3.20
36 37 1.408127 CGCCAGAAGAGAGGAGAGAGA 60.408 57.143 0.00 0.00 0.00 3.10
37 38 2.301346 GCCAGAAGAGAGGAGAGAGAG 58.699 57.143 0.00 0.00 0.00 3.20
38 39 2.092429 GCCAGAAGAGAGGAGAGAGAGA 60.092 54.545 0.00 0.00 0.00 3.10
39 40 3.813443 CCAGAAGAGAGGAGAGAGAGAG 58.187 54.545 0.00 0.00 0.00 3.20
40 41 3.434167 CCAGAAGAGAGGAGAGAGAGAGG 60.434 56.522 0.00 0.00 0.00 3.69
41 42 3.455910 CAGAAGAGAGGAGAGAGAGAGGA 59.544 52.174 0.00 0.00 0.00 3.71
42 43 3.713764 AGAAGAGAGGAGAGAGAGAGGAG 59.286 52.174 0.00 0.00 0.00 3.69
43 44 3.421394 AGAGAGGAGAGAGAGAGGAGA 57.579 52.381 0.00 0.00 0.00 3.71
44 45 3.736094 AGAGAGGAGAGAGAGAGGAGAA 58.264 50.000 0.00 0.00 0.00 2.87
45 46 4.111577 AGAGAGGAGAGAGAGAGGAGAAA 58.888 47.826 0.00 0.00 0.00 2.52
46 47 4.164988 AGAGAGGAGAGAGAGAGGAGAAAG 59.835 50.000 0.00 0.00 0.00 2.62
47 48 4.111577 AGAGGAGAGAGAGAGGAGAAAGA 58.888 47.826 0.00 0.00 0.00 2.52
48 49 4.164988 AGAGGAGAGAGAGAGGAGAAAGAG 59.835 50.000 0.00 0.00 0.00 2.85
49 50 4.111577 AGGAGAGAGAGAGGAGAAAGAGA 58.888 47.826 0.00 0.00 0.00 3.10
50 51 4.080299 AGGAGAGAGAGAGGAGAAAGAGAC 60.080 50.000 0.00 0.00 0.00 3.36
51 52 4.080299 GGAGAGAGAGAGGAGAAAGAGACT 60.080 50.000 0.00 0.00 0.00 3.24
52 53 5.130477 GGAGAGAGAGAGGAGAAAGAGACTA 59.870 48.000 0.00 0.00 0.00 2.59
53 54 6.240549 AGAGAGAGAGGAGAAAGAGACTAG 57.759 45.833 0.00 0.00 0.00 2.57
54 55 5.726793 AGAGAGAGAGGAGAAAGAGACTAGT 59.273 44.000 0.00 0.00 0.00 2.57
55 56 5.990668 AGAGAGAGGAGAAAGAGACTAGTC 58.009 45.833 15.41 15.41 0.00 2.59
56 57 5.487488 AGAGAGAGGAGAAAGAGACTAGTCA 59.513 44.000 24.44 0.00 0.00 3.41
57 58 6.012858 AGAGAGAGGAGAAAGAGACTAGTCAA 60.013 42.308 24.44 0.00 0.00 3.18
58 59 5.944007 AGAGAGGAGAAAGAGACTAGTCAAC 59.056 44.000 24.44 16.88 0.00 3.18
59 60 5.014202 AGAGGAGAAAGAGACTAGTCAACC 58.986 45.833 24.44 12.75 0.00 3.77
60 61 5.005628 AGGAGAAAGAGACTAGTCAACCT 57.994 43.478 24.44 14.68 0.00 3.50
61 62 4.770010 AGGAGAAAGAGACTAGTCAACCTG 59.230 45.833 24.44 0.00 0.00 4.00
62 63 4.490743 GAGAAAGAGACTAGTCAACCTGC 58.509 47.826 24.44 12.93 0.00 4.85
63 64 3.259625 AGAAAGAGACTAGTCAACCTGCC 59.740 47.826 24.44 12.43 0.00 4.85
64 65 1.562783 AGAGACTAGTCAACCTGCCC 58.437 55.000 24.44 3.64 0.00 5.36
65 66 1.203187 AGAGACTAGTCAACCTGCCCA 60.203 52.381 24.44 0.00 0.00 5.36
66 67 0.977395 AGACTAGTCAACCTGCCCAC 59.023 55.000 24.44 0.00 0.00 4.61
67 68 0.389948 GACTAGTCAACCTGCCCACG 60.390 60.000 18.20 0.00 0.00 4.94
68 69 1.119574 ACTAGTCAACCTGCCCACGT 61.120 55.000 0.00 0.00 0.00 4.49
69 70 0.670546 CTAGTCAACCTGCCCACGTG 60.671 60.000 9.08 9.08 0.00 4.49
70 71 2.107041 TAGTCAACCTGCCCACGTGG 62.107 60.000 28.26 28.26 37.09 4.94
71 72 3.164977 TCAACCTGCCCACGTGGA 61.165 61.111 36.07 16.25 37.39 4.02
72 73 2.034066 CAACCTGCCCACGTGGAT 59.966 61.111 36.07 12.47 37.39 3.41
73 74 1.603455 CAACCTGCCCACGTGGATT 60.603 57.895 36.07 17.49 37.39 3.01
74 75 1.152830 AACCTGCCCACGTGGATTT 59.847 52.632 36.07 16.76 37.39 2.17
75 76 0.469144 AACCTGCCCACGTGGATTTT 60.469 50.000 36.07 17.11 37.39 1.82
76 77 0.469144 ACCTGCCCACGTGGATTTTT 60.469 50.000 36.07 13.87 37.39 1.94
95 96 3.940209 TTTTTGCCACATCATCCTGAC 57.060 42.857 0.00 0.00 0.00 3.51
96 97 2.583024 TTTGCCACATCATCCTGACA 57.417 45.000 0.00 0.00 0.00 3.58
97 98 2.118313 TTGCCACATCATCCTGACAG 57.882 50.000 0.00 0.00 0.00 3.51
98 99 0.253894 TGCCACATCATCCTGACAGG 59.746 55.000 15.99 15.99 36.46 4.00
99 100 1.099879 GCCACATCATCCTGACAGGC 61.100 60.000 17.33 0.00 35.04 4.85
100 101 0.253894 CCACATCATCCTGACAGGCA 59.746 55.000 17.33 6.37 34.61 4.75
101 102 1.340308 CCACATCATCCTGACAGGCAA 60.340 52.381 17.33 0.31 34.61 4.52
102 103 2.014857 CACATCATCCTGACAGGCAAG 58.985 52.381 17.33 8.78 34.61 4.01
103 104 1.022735 CATCATCCTGACAGGCAAGC 58.977 55.000 17.33 0.00 34.61 4.01
104 105 0.106819 ATCATCCTGACAGGCAAGCC 60.107 55.000 17.33 2.02 34.61 4.35
105 106 1.751927 CATCCTGACAGGCAAGCCC 60.752 63.158 17.33 0.00 34.61 5.19
106 107 2.988839 ATCCTGACAGGCAAGCCCC 61.989 63.158 17.33 0.00 34.61 5.80
116 117 4.473520 CAAGCCCCGCCTGTCGAT 62.474 66.667 0.00 0.00 41.67 3.59
117 118 3.717294 AAGCCCCGCCTGTCGATT 61.717 61.111 0.00 0.00 41.67 3.34
118 119 3.268103 AAGCCCCGCCTGTCGATTT 62.268 57.895 0.00 0.00 41.67 2.17
119 120 3.202706 GCCCCGCCTGTCGATTTC 61.203 66.667 0.00 0.00 41.67 2.17
120 121 2.890474 CCCCGCCTGTCGATTTCG 60.890 66.667 0.00 0.00 41.67 3.46
121 122 3.564027 CCCGCCTGTCGATTTCGC 61.564 66.667 0.00 0.00 41.67 4.70
122 123 2.509336 CCGCCTGTCGATTTCGCT 60.509 61.111 0.00 0.00 41.67 4.93
123 124 1.226859 CCGCCTGTCGATTTCGCTA 60.227 57.895 0.00 0.00 41.67 4.26
124 125 0.597637 CCGCCTGTCGATTTCGCTAT 60.598 55.000 0.00 0.00 41.67 2.97
125 126 1.209128 CGCCTGTCGATTTCGCTATT 58.791 50.000 0.00 0.00 41.67 1.73
126 127 1.593006 CGCCTGTCGATTTCGCTATTT 59.407 47.619 0.00 0.00 41.67 1.40
127 128 2.030457 CGCCTGTCGATTTCGCTATTTT 59.970 45.455 0.00 0.00 41.67 1.82
128 129 3.608456 GCCTGTCGATTTCGCTATTTTC 58.392 45.455 0.00 0.00 39.60 2.29
129 130 3.309954 GCCTGTCGATTTCGCTATTTTCT 59.690 43.478 0.00 0.00 39.60 2.52
130 131 4.783450 GCCTGTCGATTTCGCTATTTTCTG 60.783 45.833 0.00 0.00 39.60 3.02
131 132 4.260375 CCTGTCGATTTCGCTATTTTCTGG 60.260 45.833 0.00 0.00 39.60 3.86
132 133 3.621268 TGTCGATTTCGCTATTTTCTGGG 59.379 43.478 0.00 0.00 39.60 4.45
133 134 2.612212 TCGATTTCGCTATTTTCTGGGC 59.388 45.455 0.00 0.00 39.60 5.36
134 135 2.614057 CGATTTCGCTATTTTCTGGGCT 59.386 45.455 0.00 0.00 0.00 5.19
135 136 3.807622 CGATTTCGCTATTTTCTGGGCTA 59.192 43.478 0.00 0.00 0.00 3.93
136 137 4.272504 CGATTTCGCTATTTTCTGGGCTAA 59.727 41.667 0.00 0.00 0.00 3.09
137 138 5.220777 CGATTTCGCTATTTTCTGGGCTAAA 60.221 40.000 0.00 0.00 0.00 1.85
138 139 5.968528 TTTCGCTATTTTCTGGGCTAAAA 57.031 34.783 0.00 0.00 0.00 1.52
139 140 4.957759 TCGCTATTTTCTGGGCTAAAAC 57.042 40.909 0.00 0.00 0.00 2.43
140 141 3.372822 TCGCTATTTTCTGGGCTAAAACG 59.627 43.478 0.00 0.00 0.00 3.60
141 142 3.435566 GCTATTTTCTGGGCTAAAACGC 58.564 45.455 0.00 0.00 0.00 4.84
142 143 3.119637 GCTATTTTCTGGGCTAAAACGCA 60.120 43.478 0.00 0.00 31.30 5.24
144 145 0.596082 TTTCTGGGCTAAAACGCAGC 59.404 50.000 3.93 0.00 46.92 5.25
145 146 1.573829 TTCTGGGCTAAAACGCAGCG 61.574 55.000 14.82 14.82 46.92 5.18
146 147 2.281208 TGGGCTAAAACGCAGCGT 60.281 55.556 16.61 16.61 43.97 5.07
147 148 2.240612 CTGGGCTAAAACGCAGCGTC 62.241 60.000 23.22 8.08 42.68 5.19
148 149 2.322081 GGGCTAAAACGCAGCGTCA 61.322 57.895 23.22 8.79 39.99 4.35
149 150 1.132640 GGCTAAAACGCAGCGTCAG 59.867 57.895 23.22 18.81 39.99 3.51
150 151 1.566018 GGCTAAAACGCAGCGTCAGT 61.566 55.000 23.22 11.92 39.99 3.41
151 152 0.451135 GCTAAAACGCAGCGTCAGTG 60.451 55.000 23.22 13.17 39.99 3.66
152 153 0.451135 CTAAAACGCAGCGTCAGTGC 60.451 55.000 23.22 0.00 39.99 4.40
154 155 2.105960 AAAACGCAGCGTCAGTGCTC 62.106 55.000 23.22 0.00 45.23 4.26
161 162 2.126618 CGTCAGTGCTCCGCGTTA 60.127 61.111 4.92 0.00 0.00 3.18
162 163 2.434134 CGTCAGTGCTCCGCGTTAC 61.434 63.158 4.92 0.00 0.00 2.50
163 164 1.372499 GTCAGTGCTCCGCGTTACA 60.372 57.895 4.92 0.00 0.00 2.41
164 165 1.080772 TCAGTGCTCCGCGTTACAG 60.081 57.895 4.92 0.00 0.00 2.74
165 166 1.080772 CAGTGCTCCGCGTTACAGA 60.081 57.895 4.92 0.00 0.00 3.41
166 167 0.458543 CAGTGCTCCGCGTTACAGAT 60.459 55.000 4.92 0.00 0.00 2.90
167 168 0.246635 AGTGCTCCGCGTTACAGATT 59.753 50.000 4.92 0.00 0.00 2.40
168 169 1.475280 AGTGCTCCGCGTTACAGATTA 59.525 47.619 4.92 0.00 0.00 1.75
169 170 1.852895 GTGCTCCGCGTTACAGATTAG 59.147 52.381 4.92 0.00 0.00 1.73
170 171 0.853419 GCTCCGCGTTACAGATTAGC 59.147 55.000 4.92 0.00 0.00 3.09
171 172 1.488527 CTCCGCGTTACAGATTAGCC 58.511 55.000 4.92 0.00 0.00 3.93
172 173 0.103572 TCCGCGTTACAGATTAGCCC 59.896 55.000 4.92 0.00 0.00 5.19
173 174 0.104304 CCGCGTTACAGATTAGCCCT 59.896 55.000 4.92 0.00 0.00 5.19
174 175 1.338973 CCGCGTTACAGATTAGCCCTA 59.661 52.381 4.92 0.00 0.00 3.53
175 176 2.029290 CCGCGTTACAGATTAGCCCTAT 60.029 50.000 4.92 0.00 0.00 2.57
176 177 3.554337 CCGCGTTACAGATTAGCCCTATT 60.554 47.826 4.92 0.00 0.00 1.73
177 178 3.428870 CGCGTTACAGATTAGCCCTATTG 59.571 47.826 0.00 0.00 0.00 1.90
178 179 4.377897 GCGTTACAGATTAGCCCTATTGT 58.622 43.478 0.00 0.00 0.00 2.71
179 180 4.814771 GCGTTACAGATTAGCCCTATTGTT 59.185 41.667 0.00 0.00 0.00 2.83
180 181 5.277345 GCGTTACAGATTAGCCCTATTGTTG 60.277 44.000 0.00 0.00 0.00 3.33
181 182 5.236478 CGTTACAGATTAGCCCTATTGTTGG 59.764 44.000 0.00 0.00 0.00 3.77
182 183 4.862641 ACAGATTAGCCCTATTGTTGGT 57.137 40.909 0.00 0.00 0.00 3.67
183 184 4.526970 ACAGATTAGCCCTATTGTTGGTG 58.473 43.478 0.00 0.00 0.00 4.17
184 185 3.885297 CAGATTAGCCCTATTGTTGGTGG 59.115 47.826 0.00 0.00 0.00 4.61
185 186 3.527665 AGATTAGCCCTATTGTTGGTGGT 59.472 43.478 0.00 0.00 0.00 4.16
186 187 3.818295 TTAGCCCTATTGTTGGTGGTT 57.182 42.857 0.00 0.00 0.00 3.67
187 188 2.694616 AGCCCTATTGTTGGTGGTTT 57.305 45.000 0.00 0.00 0.00 3.27
188 189 2.970987 AGCCCTATTGTTGGTGGTTTT 58.029 42.857 0.00 0.00 0.00 2.43
189 190 3.313791 AGCCCTATTGTTGGTGGTTTTT 58.686 40.909 0.00 0.00 0.00 1.94
207 208 4.879104 TTTTTGTGCTTTGCCTCAAATG 57.121 36.364 9.38 0.00 33.99 2.32
208 209 3.540314 TTTGTGCTTTGCCTCAAATGT 57.460 38.095 0.00 0.00 32.70 2.71
209 210 2.512485 TGTGCTTTGCCTCAAATGTG 57.488 45.000 0.00 0.00 32.70 3.21
210 211 1.068895 TGTGCTTTGCCTCAAATGTGG 59.931 47.619 0.00 0.00 32.70 4.17
211 212 1.069049 GTGCTTTGCCTCAAATGTGGT 59.931 47.619 3.69 0.00 32.70 4.16
212 213 2.295909 GTGCTTTGCCTCAAATGTGGTA 59.704 45.455 3.69 0.00 32.70 3.25
213 214 2.295909 TGCTTTGCCTCAAATGTGGTAC 59.704 45.455 3.69 0.00 32.70 3.34
214 215 2.558359 GCTTTGCCTCAAATGTGGTACT 59.442 45.455 3.69 0.00 32.70 2.73
215 216 3.612479 GCTTTGCCTCAAATGTGGTACTG 60.612 47.826 3.69 0.00 32.70 2.74
216 217 3.500448 TTGCCTCAAATGTGGTACTGA 57.500 42.857 3.69 0.00 0.00 3.41
217 218 3.719268 TGCCTCAAATGTGGTACTGAT 57.281 42.857 3.69 0.00 0.00 2.90
218 219 3.609853 TGCCTCAAATGTGGTACTGATC 58.390 45.455 3.69 0.00 0.00 2.92
219 220 3.264193 TGCCTCAAATGTGGTACTGATCT 59.736 43.478 3.69 0.00 0.00 2.75
220 221 3.624861 GCCTCAAATGTGGTACTGATCTG 59.375 47.826 3.69 0.00 0.00 2.90
221 222 4.836825 CCTCAAATGTGGTACTGATCTGT 58.163 43.478 10.33 10.33 0.00 3.41
222 223 5.248640 CCTCAAATGTGGTACTGATCTGTT 58.751 41.667 10.76 0.00 0.00 3.16
223 224 6.406370 CCTCAAATGTGGTACTGATCTGTTA 58.594 40.000 10.76 0.00 0.00 2.41
224 225 6.313905 CCTCAAATGTGGTACTGATCTGTTAC 59.686 42.308 10.76 8.57 0.00 2.50
225 226 6.170506 TCAAATGTGGTACTGATCTGTTACC 58.829 40.000 10.76 14.78 0.00 2.85
226 227 4.755266 ATGTGGTACTGATCTGTTACCC 57.245 45.455 10.76 9.15 0.00 3.69
227 228 3.786553 TGTGGTACTGATCTGTTACCCT 58.213 45.455 10.76 0.00 0.00 4.34
228 229 4.938028 TGTGGTACTGATCTGTTACCCTA 58.062 43.478 10.76 5.85 0.00 3.53
229 230 4.954202 TGTGGTACTGATCTGTTACCCTAG 59.046 45.833 10.76 0.00 0.00 3.02
230 231 4.954826 GTGGTACTGATCTGTTACCCTAGT 59.045 45.833 10.76 0.00 0.00 2.57
231 232 5.067544 GTGGTACTGATCTGTTACCCTAGTC 59.932 48.000 10.76 2.95 0.00 2.59
232 233 4.583907 GGTACTGATCTGTTACCCTAGTCC 59.416 50.000 10.76 0.00 0.00 3.85
233 234 4.332683 ACTGATCTGTTACCCTAGTCCA 57.667 45.455 0.00 0.00 0.00 4.02
234 235 4.884961 ACTGATCTGTTACCCTAGTCCAT 58.115 43.478 0.00 0.00 0.00 3.41
235 236 6.027025 ACTGATCTGTTACCCTAGTCCATA 57.973 41.667 0.00 0.00 0.00 2.74
236 237 6.441222 ACTGATCTGTTACCCTAGTCCATAA 58.559 40.000 0.00 0.00 0.00 1.90
237 238 7.076446 ACTGATCTGTTACCCTAGTCCATAAT 58.924 38.462 0.00 0.00 0.00 1.28
238 239 7.015682 ACTGATCTGTTACCCTAGTCCATAATG 59.984 40.741 0.00 0.00 0.00 1.90
239 240 6.844388 TGATCTGTTACCCTAGTCCATAATGT 59.156 38.462 0.00 0.00 0.00 2.71
240 241 6.479972 TCTGTTACCCTAGTCCATAATGTG 57.520 41.667 0.00 0.00 0.00 3.21
241 242 5.962031 TCTGTTACCCTAGTCCATAATGTGT 59.038 40.000 0.00 0.00 0.00 3.72
242 243 5.984725 TGTTACCCTAGTCCATAATGTGTG 58.015 41.667 0.00 0.00 0.00 3.82
243 244 5.722441 TGTTACCCTAGTCCATAATGTGTGA 59.278 40.000 0.00 0.00 0.00 3.58
244 245 6.385759 TGTTACCCTAGTCCATAATGTGTGAT 59.614 38.462 0.00 0.00 0.00 3.06
245 246 5.296151 ACCCTAGTCCATAATGTGTGATG 57.704 43.478 0.00 0.00 0.00 3.07
246 247 4.968719 ACCCTAGTCCATAATGTGTGATGA 59.031 41.667 0.00 0.00 0.00 2.92
247 248 5.608437 ACCCTAGTCCATAATGTGTGATGAT 59.392 40.000 0.00 0.00 0.00 2.45
248 249 6.101734 ACCCTAGTCCATAATGTGTGATGATT 59.898 38.462 0.00 0.00 0.00 2.57
249 250 7.000472 CCCTAGTCCATAATGTGTGATGATTT 59.000 38.462 0.00 0.00 0.00 2.17
250 251 7.503566 CCCTAGTCCATAATGTGTGATGATTTT 59.496 37.037 0.00 0.00 0.00 1.82
251 252 8.347771 CCTAGTCCATAATGTGTGATGATTTTG 58.652 37.037 0.00 0.00 0.00 2.44
252 253 7.104043 AGTCCATAATGTGTGATGATTTTGG 57.896 36.000 0.00 0.00 34.01 3.28
253 254 6.097270 AGTCCATAATGTGTGATGATTTTGGG 59.903 38.462 0.00 0.00 33.70 4.12
254 255 5.957168 TCCATAATGTGTGATGATTTTGGGT 59.043 36.000 0.00 0.00 33.70 4.51
255 256 7.068103 GTCCATAATGTGTGATGATTTTGGGTA 59.932 37.037 0.00 0.00 33.70 3.69
256 257 7.617329 TCCATAATGTGTGATGATTTTGGGTAA 59.383 33.333 0.00 0.00 33.70 2.85
257 258 8.256605 CCATAATGTGTGATGATTTTGGGTAAA 58.743 33.333 0.00 0.00 30.92 2.01
258 259 9.820725 CATAATGTGTGATGATTTTGGGTAAAT 57.179 29.630 0.00 0.00 39.15 1.40
261 262 9.874205 AATGTGTGATGATTTTGGGTAAATAAG 57.126 29.630 0.00 0.00 36.59 1.73
262 263 8.415950 TGTGTGATGATTTTGGGTAAATAAGT 57.584 30.769 0.00 0.00 36.59 2.24
263 264 8.519526 TGTGTGATGATTTTGGGTAAATAAGTC 58.480 33.333 0.00 0.00 36.59 3.01
294 295 3.529533 CAGCACCAAGAAGTGATCCTAG 58.470 50.000 0.00 0.00 40.34 3.02
301 302 3.334583 AGAAGTGATCCTAGCGCAAAA 57.665 42.857 11.47 0.00 0.00 2.44
306 307 2.939103 GTGATCCTAGCGCAAAATGAGT 59.061 45.455 11.47 0.00 0.00 3.41
308 309 1.086696 TCCTAGCGCAAAATGAGTGC 58.913 50.000 11.47 0.00 42.55 4.40
425 432 6.095720 AGGTGTCAAGGTGAAAAACGATTAAA 59.904 34.615 0.00 0.00 0.00 1.52
478 518 0.963962 GGTGGACAGTTACGAGACCA 59.036 55.000 0.00 0.00 0.00 4.02
509 549 1.078709 CTAATCAGCCCACACACACG 58.921 55.000 0.00 0.00 0.00 4.49
510 550 0.682292 TAATCAGCCCACACACACGA 59.318 50.000 0.00 0.00 0.00 4.35
511 551 0.884704 AATCAGCCCACACACACGAC 60.885 55.000 0.00 0.00 0.00 4.34
512 552 1.758440 ATCAGCCCACACACACGACT 61.758 55.000 0.00 0.00 0.00 4.18
513 553 1.110518 TCAGCCCACACACACGACTA 61.111 55.000 0.00 0.00 0.00 2.59
514 554 0.249699 CAGCCCACACACACGACTAA 60.250 55.000 0.00 0.00 0.00 2.24
515 555 0.033504 AGCCCACACACACGACTAAG 59.966 55.000 0.00 0.00 0.00 2.18
516 556 0.949105 GCCCACACACACGACTAAGG 60.949 60.000 0.00 0.00 0.00 2.69
517 557 0.391597 CCCACACACACGACTAAGGT 59.608 55.000 0.00 0.00 0.00 3.50
518 558 1.202604 CCCACACACACGACTAAGGTT 60.203 52.381 0.00 0.00 0.00 3.50
519 559 2.557317 CCACACACACGACTAAGGTTT 58.443 47.619 0.00 0.00 0.00 3.27
520 560 2.940410 CCACACACACGACTAAGGTTTT 59.060 45.455 0.00 0.00 0.00 2.43
521 561 4.121317 CCACACACACGACTAAGGTTTTA 58.879 43.478 0.00 0.00 0.00 1.52
522 562 4.571580 CCACACACACGACTAAGGTTTTAA 59.428 41.667 0.00 0.00 0.00 1.52
523 563 5.064962 CCACACACACGACTAAGGTTTTAAA 59.935 40.000 0.00 0.00 0.00 1.52
524 564 6.238538 CCACACACACGACTAAGGTTTTAAAT 60.239 38.462 0.00 0.00 0.00 1.40
525 565 7.190871 CACACACACGACTAAGGTTTTAAATT 58.809 34.615 0.00 0.00 0.00 1.82
526 566 7.698970 CACACACACGACTAAGGTTTTAAATTT 59.301 33.333 0.00 0.00 0.00 1.82
527 567 7.911727 ACACACACGACTAAGGTTTTAAATTTC 59.088 33.333 0.00 0.00 0.00 2.17
547 969 9.868277 AAATTTCGAACCTTATCAAAATATGCA 57.132 25.926 0.00 0.00 0.00 3.96
556 978 9.097257 ACCTTATCAAAATATGCAAAATTTCGG 57.903 29.630 9.95 6.89 0.00 4.30
557 979 9.311916 CCTTATCAAAATATGCAAAATTTCGGA 57.688 29.630 9.95 10.74 0.00 4.55
564 986 9.623350 AAAATATGCAAAATTTCGGAAAATTGG 57.377 25.926 22.73 14.47 42.82 3.16
565 987 7.920160 ATATGCAAAATTTCGGAAAATTGGT 57.080 28.000 22.73 4.98 42.82 3.67
566 988 9.442047 AATATGCAAAATTTCGGAAAATTGGTA 57.558 25.926 22.73 13.61 42.82 3.25
567 989 7.920160 ATGCAAAATTTCGGAAAATTGGTAT 57.080 28.000 22.73 14.85 42.82 2.73
569 991 9.612066 ATGCAAAATTTCGGAAAATTGGTATAT 57.388 25.926 22.73 8.99 42.82 0.86
570 992 9.442047 TGCAAAATTTCGGAAAATTGGTATATT 57.558 25.926 22.73 5.02 42.82 1.28
574 996 8.865590 AATTTCGGAAAATTGGTATATTTCGG 57.134 30.769 7.33 0.00 42.21 4.30
575 997 7.627298 TTTCGGAAAATTGGTATATTTCGGA 57.373 32.000 0.00 0.00 39.25 4.55
576 998 6.607735 TCGGAAAATTGGTATATTTCGGAC 57.392 37.500 0.00 0.00 37.43 4.79
577 999 6.114089 TCGGAAAATTGGTATATTTCGGACA 58.886 36.000 0.00 0.00 37.43 4.02
578 1000 6.768861 TCGGAAAATTGGTATATTTCGGACAT 59.231 34.615 0.00 0.00 37.43 3.06
579 1001 7.283580 TCGGAAAATTGGTATATTTCGGACATT 59.716 33.333 0.00 0.00 37.43 2.71
580 1002 8.561212 CGGAAAATTGGTATATTTCGGACATTA 58.439 33.333 0.00 0.00 36.22 1.90
581 1003 9.673454 GGAAAATTGGTATATTTCGGACATTAC 57.327 33.333 0.00 0.00 34.63 1.89
671 1093 9.814899 TTTGAAATCAGTTTAAATCTGCTTTGA 57.185 25.926 16.86 10.57 33.42 2.69
672 1094 9.814899 TTGAAATCAGTTTAAATCTGCTTTGAA 57.185 25.926 16.86 13.93 33.42 2.69
673 1095 9.814899 TGAAATCAGTTTAAATCTGCTTTGAAA 57.185 25.926 16.86 6.82 33.42 2.69
679 1101 9.654417 CAGTTTAAATCTGCTTTGAAATTTTGG 57.346 29.630 0.00 0.00 0.00 3.28
680 1102 8.344831 AGTTTAAATCTGCTTTGAAATTTTGGC 58.655 29.630 0.00 0.00 0.00 4.52
682 1104 6.947644 AAATCTGCTTTGAAATTTTGGCTT 57.052 29.167 0.00 0.00 0.00 4.35
684 1106 8.449251 AAATCTGCTTTGAAATTTTGGCTTTA 57.551 26.923 0.00 0.00 0.00 1.85
685 1107 8.449251 AATCTGCTTTGAAATTTTGGCTTTAA 57.551 26.923 0.00 0.00 0.00 1.52
686 1108 7.856145 TCTGCTTTGAAATTTTGGCTTTAAA 57.144 28.000 0.00 0.00 0.00 1.52
688 1110 8.734386 TCTGCTTTGAAATTTTGGCTTTAAAAA 58.266 25.926 0.00 0.00 33.67 1.94
689 1111 9.518906 CTGCTTTGAAATTTTGGCTTTAAAAAT 57.481 25.926 0.00 0.00 38.54 1.82
714 1136 7.730364 ATTTTAGACCCTACTGAAATATGCG 57.270 36.000 0.00 0.00 35.42 4.73
716 1138 6.474140 TTAGACCCTACTGAAATATGCGAA 57.526 37.500 0.00 0.00 0.00 4.70
718 1140 5.930135 AGACCCTACTGAAATATGCGAAAT 58.070 37.500 0.00 0.00 0.00 2.17
721 1143 7.012421 AGACCCTACTGAAATATGCGAAATTTC 59.988 37.037 8.20 8.20 41.60 2.17
722 1144 6.601613 ACCCTACTGAAATATGCGAAATTTCA 59.398 34.615 17.99 15.75 46.08 2.69
730 1152 9.507280 TGAAATATGCGAAATTTCAGAGATTTC 57.493 29.630 23.78 23.78 44.39 2.17
731 1153 9.507280 GAAATATGCGAAATTTCAGAGATTTCA 57.493 29.630 24.64 8.19 41.39 2.69
732 1154 8.847444 AATATGCGAAATTTCAGAGATTTCAC 57.153 30.769 20.80 14.32 41.39 3.18
734 1156 5.692814 TGCGAAATTTCAGAGATTTCACTG 58.307 37.500 20.80 9.89 41.39 3.66
735 1157 5.469760 TGCGAAATTTCAGAGATTTCACTGA 59.530 36.000 20.80 3.93 41.39 3.41
743 1165 7.496529 TTCAGAGATTTCACTGAAATTTCGT 57.503 32.000 20.98 10.95 45.73 3.85
745 1167 7.355017 TCAGAGATTTCACTGAAATTTCGTTG 58.645 34.615 20.98 16.91 43.39 4.10
746 1168 6.087291 CAGAGATTTCACTGAAATTTCGTTGC 59.913 38.462 20.98 8.40 43.39 4.17
747 1169 5.830912 AGATTTCACTGAAATTTCGTTGCA 58.169 33.333 16.48 0.93 41.56 4.08
748 1170 6.272318 AGATTTCACTGAAATTTCGTTGCAA 58.728 32.000 16.48 9.41 41.56 4.08
749 1171 6.925165 AGATTTCACTGAAATTTCGTTGCAAT 59.075 30.769 16.48 13.18 41.56 3.56
750 1172 6.900568 TTTCACTGAAATTTCGTTGCAATT 57.099 29.167 13.34 0.00 0.00 2.32
753 1175 6.932051 TCACTGAAATTTCGTTGCAATTTTC 58.068 32.000 13.34 8.31 34.61 2.29
755 1177 7.063898 TCACTGAAATTTCGTTGCAATTTTCAA 59.936 29.630 13.34 0.00 36.18 2.69
756 1178 7.162385 CACTGAAATTTCGTTGCAATTTTCAAC 59.838 33.333 13.34 9.27 36.18 3.18
757 1179 6.481984 TGAAATTTCGTTGCAATTTTCAACC 58.518 32.000 13.34 0.00 40.35 3.77
760 1182 3.090952 TCGTTGCAATTTTCAACCCTG 57.909 42.857 0.59 2.78 40.35 4.45
764 1193 1.761784 TGCAATTTTCAACCCTGCACT 59.238 42.857 0.00 0.00 38.06 4.40
856 1345 1.145945 AGATGAGAGAGTATCCCCGCA 59.854 52.381 0.00 0.00 33.66 5.69
857 1346 1.964223 GATGAGAGAGTATCCCCGCAA 59.036 52.381 0.00 0.00 33.66 4.85
858 1347 1.860641 TGAGAGAGTATCCCCGCAAA 58.139 50.000 0.00 0.00 33.66 3.68
859 1348 2.184533 TGAGAGAGTATCCCCGCAAAA 58.815 47.619 0.00 0.00 33.66 2.44
860 1349 2.569853 TGAGAGAGTATCCCCGCAAAAA 59.430 45.455 0.00 0.00 33.66 1.94
1369 2019 5.887598 TCACTACGGCCACTCTAGTATTTTA 59.112 40.000 2.24 0.00 0.00 1.52
1461 2123 6.862090 ACTAGTTAGAGTAGCAGTTTTGAACG 59.138 38.462 0.00 0.00 36.23 3.95
1474 2136 1.916506 TTGAACGGCCAAATGGATGA 58.083 45.000 2.24 0.00 37.39 2.92
1484 2146 5.600696 GGCCAAATGGATGAAATTAATCGT 58.399 37.500 2.98 0.00 37.39 3.73
1619 2298 2.735772 CCACCTCCACTCCATCCGG 61.736 68.421 0.00 0.00 0.00 5.14
1692 2371 3.492656 CGAGGTCAAGAACTTCTGGAACA 60.493 47.826 12.93 0.00 36.59 3.18
1990 2854 2.657143 GGGGTACAACAACAACCAGAA 58.343 47.619 0.00 0.00 34.83 3.02
2145 3025 0.101040 GAGCTGTGCTGCAACAACAA 59.899 50.000 2.77 0.00 39.88 2.83
2146 3026 0.179129 AGCTGTGCTGCAACAACAAC 60.179 50.000 2.77 0.00 37.57 3.32
2147 3027 1.473857 GCTGTGCTGCAACAACAACG 61.474 55.000 2.77 0.00 0.00 4.10
2153 3033 2.330041 GCAACAACAACGACCCGG 59.670 61.111 0.00 0.00 0.00 5.73
2161 3041 3.552384 AACGACCCGGGCAACAGA 61.552 61.111 24.08 0.00 39.74 3.41
2255 3135 3.064207 TCAAGCATGACACCGTCTTAAC 58.936 45.455 0.00 0.00 33.15 2.01
2287 3167 4.038633 ACCCTAGGACCACCTTCTTTATC 58.961 47.826 11.48 0.00 45.36 1.75
2291 3171 2.239907 AGGACCACCTTCTTTATCAGGC 59.760 50.000 0.00 0.00 45.36 4.85
2340 3220 3.338249 GCTGGCTTCTCATCTGTAAACA 58.662 45.455 0.00 0.00 0.00 2.83
2355 3235 6.767524 CTGTAAACAGAGATCTCCACTAGT 57.232 41.667 19.30 7.69 46.59 2.57
2356 3236 7.867305 CTGTAAACAGAGATCTCCACTAGTA 57.133 40.000 19.30 2.16 46.59 1.82
2357 3237 7.867305 TGTAAACAGAGATCTCCACTAGTAG 57.133 40.000 19.30 0.00 0.00 2.57
2358 3238 7.631007 TGTAAACAGAGATCTCCACTAGTAGA 58.369 38.462 19.30 0.00 0.00 2.59
2359 3239 8.107729 TGTAAACAGAGATCTCCACTAGTAGAA 58.892 37.037 19.30 0.00 0.00 2.10
2360 3240 8.958506 GTAAACAGAGATCTCCACTAGTAGAAA 58.041 37.037 19.30 0.00 0.00 2.52
2361 3241 8.423906 AAACAGAGATCTCCACTAGTAGAAAA 57.576 34.615 19.30 0.00 0.00 2.29
2362 3242 7.639113 ACAGAGATCTCCACTAGTAGAAAAG 57.361 40.000 19.30 0.00 0.00 2.27
2363 3243 6.605594 ACAGAGATCTCCACTAGTAGAAAAGG 59.394 42.308 19.30 0.65 0.00 3.11
2364 3244 6.040391 CAGAGATCTCCACTAGTAGAAAAGGG 59.960 46.154 19.30 0.00 0.00 3.95
2365 3245 5.212745 AGATCTCCACTAGTAGAAAAGGGG 58.787 45.833 3.59 0.55 37.66 4.79
2366 3246 3.105283 TCTCCACTAGTAGAAAAGGGGC 58.895 50.000 3.59 0.00 36.14 5.80
2367 3247 3.108376 CTCCACTAGTAGAAAAGGGGCT 58.892 50.000 3.59 0.00 36.14 5.19
2368 3248 3.519913 CTCCACTAGTAGAAAAGGGGCTT 59.480 47.826 3.59 0.00 36.14 4.35
2369 3249 3.914435 TCCACTAGTAGAAAAGGGGCTTT 59.086 43.478 3.59 0.00 36.14 3.51
2370 3250 4.019591 TCCACTAGTAGAAAAGGGGCTTTC 60.020 45.833 3.59 0.00 36.14 2.62
2371 3251 4.263331 CCACTAGTAGAAAAGGGGCTTTCA 60.263 45.833 3.59 0.00 37.70 2.69
2372 3252 5.501156 CACTAGTAGAAAAGGGGCTTTCAT 58.499 41.667 3.59 0.00 37.70 2.57
2373 3253 5.946377 CACTAGTAGAAAAGGGGCTTTCATT 59.054 40.000 3.59 0.00 37.70 2.57
2374 3254 6.094186 CACTAGTAGAAAAGGGGCTTTCATTC 59.906 42.308 3.59 0.00 37.70 2.67
2375 3255 4.010349 AGTAGAAAAGGGGCTTTCATTCG 58.990 43.478 1.28 0.00 37.70 3.34
2376 3256 2.171003 AGAAAAGGGGCTTTCATTCGG 58.829 47.619 1.28 0.00 37.70 4.30
2377 3257 1.204704 GAAAAGGGGCTTTCATTCGGG 59.795 52.381 0.00 0.00 35.71 5.14
2378 3258 0.114364 AAAGGGGCTTTCATTCGGGT 59.886 50.000 0.00 0.00 0.00 5.28
2379 3259 0.323451 AAGGGGCTTTCATTCGGGTC 60.323 55.000 0.00 0.00 0.00 4.46
2380 3260 1.208165 AGGGGCTTTCATTCGGGTCT 61.208 55.000 0.00 0.00 0.00 3.85
2381 3261 1.032114 GGGGCTTTCATTCGGGTCTG 61.032 60.000 0.00 0.00 0.00 3.51
2382 3262 1.032114 GGGCTTTCATTCGGGTCTGG 61.032 60.000 0.00 0.00 0.00 3.86
2383 3263 0.322546 GGCTTTCATTCGGGTCTGGT 60.323 55.000 0.00 0.00 0.00 4.00
2384 3264 1.087501 GCTTTCATTCGGGTCTGGTC 58.912 55.000 0.00 0.00 0.00 4.02
2385 3265 1.610624 GCTTTCATTCGGGTCTGGTCA 60.611 52.381 0.00 0.00 0.00 4.02
2388 3268 1.450312 CATTCGGGTCTGGTCAGCC 60.450 63.158 0.00 0.00 0.00 4.85
2514 3395 3.577919 CCTGTCTAGCCCTGTATAACCT 58.422 50.000 0.00 0.00 0.00 3.50
2520 3401 5.832060 GTCTAGCCCTGTATAACCTAGAACA 59.168 44.000 0.00 0.00 37.02 3.18
2539 3420 9.516546 CTAGAACATATATGTACAGTACCCTGA 57.483 37.037 18.56 0.00 39.57 3.86
2593 3476 1.202533 CGTAAGACCTGCCGAATCCAT 60.203 52.381 0.00 0.00 43.02 3.41
2926 3811 0.936297 GTTCACGTAGCGTCGGTTGT 60.936 55.000 0.65 0.00 38.32 3.32
3007 3904 6.258947 GGTAATCACAGATCAAGCTAGGTTTC 59.741 42.308 3.96 1.17 0.00 2.78
3009 3906 3.258372 TCACAGATCAAGCTAGGTTTCGT 59.742 43.478 3.96 2.00 0.00 3.85
3019 3916 2.540515 CTAGGTTTCGTGATCGTGCAT 58.459 47.619 0.00 0.00 38.33 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.997064 CTGGCGCCGGAGTTCTCTG 62.997 68.421 32.31 0.00 0.00 3.35
4 5 3.764466 CTGGCGCCGGAGTTCTCT 61.764 66.667 32.31 0.00 0.00 3.10
5 6 3.296709 TTCTGGCGCCGGAGTTCTC 62.297 63.158 35.07 2.50 32.36 2.87
7 8 2.815647 CTTCTGGCGCCGGAGTTC 60.816 66.667 35.07 4.14 32.36 3.01
8 9 3.302347 CTCTTCTGGCGCCGGAGTT 62.302 63.158 35.07 0.00 32.36 3.01
9 10 3.764466 CTCTTCTGGCGCCGGAGT 61.764 66.667 35.07 0.00 32.36 3.85
10 11 3.423162 CTCTCTTCTGGCGCCGGAG 62.423 68.421 35.07 28.29 32.36 4.63
11 12 3.452786 CTCTCTTCTGGCGCCGGA 61.453 66.667 34.14 34.14 0.00 5.14
12 13 4.521062 CCTCTCTTCTGGCGCCGG 62.521 72.222 30.18 30.18 0.00 6.13
13 14 3.423162 CTCCTCTCTTCTGGCGCCG 62.423 68.421 23.90 16.91 0.00 6.46
14 15 2.015227 CTCTCCTCTCTTCTGGCGCC 62.015 65.000 22.73 22.73 0.00 6.53
15 16 1.034838 TCTCTCCTCTCTTCTGGCGC 61.035 60.000 0.00 0.00 0.00 6.53
16 17 1.024271 CTCTCTCCTCTCTTCTGGCG 58.976 60.000 0.00 0.00 0.00 5.69
17 18 2.092429 TCTCTCTCTCCTCTCTTCTGGC 60.092 54.545 0.00 0.00 0.00 4.85
18 19 3.434167 CCTCTCTCTCTCCTCTCTTCTGG 60.434 56.522 0.00 0.00 0.00 3.86
19 20 3.455910 TCCTCTCTCTCTCCTCTCTTCTG 59.544 52.174 0.00 0.00 0.00 3.02
20 21 3.713764 CTCCTCTCTCTCTCCTCTCTTCT 59.286 52.174 0.00 0.00 0.00 2.85
21 22 3.711704 TCTCCTCTCTCTCTCCTCTCTTC 59.288 52.174 0.00 0.00 0.00 2.87
22 23 3.736094 TCTCCTCTCTCTCTCCTCTCTT 58.264 50.000 0.00 0.00 0.00 2.85
23 24 3.421394 TCTCCTCTCTCTCTCCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
24 25 4.164221 TCTTTCTCCTCTCTCTCTCCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
25 26 4.111577 TCTTTCTCCTCTCTCTCTCCTCT 58.888 47.826 0.00 0.00 0.00 3.69
26 27 4.164221 TCTCTTTCTCCTCTCTCTCTCCTC 59.836 50.000 0.00 0.00 0.00 3.71
27 28 4.080299 GTCTCTTTCTCCTCTCTCTCTCCT 60.080 50.000 0.00 0.00 0.00 3.69
28 29 4.080299 AGTCTCTTTCTCCTCTCTCTCTCC 60.080 50.000 0.00 0.00 0.00 3.71
29 30 5.104259 AGTCTCTTTCTCCTCTCTCTCTC 57.896 47.826 0.00 0.00 0.00 3.20
30 31 5.726793 ACTAGTCTCTTTCTCCTCTCTCTCT 59.273 44.000 0.00 0.00 0.00 3.10
31 32 5.990668 ACTAGTCTCTTTCTCCTCTCTCTC 58.009 45.833 0.00 0.00 0.00 3.20
32 33 5.487488 TGACTAGTCTCTTTCTCCTCTCTCT 59.513 44.000 23.01 0.00 0.00 3.10
33 34 5.741011 TGACTAGTCTCTTTCTCCTCTCTC 58.259 45.833 23.01 0.00 0.00 3.20
34 35 5.772393 TGACTAGTCTCTTTCTCCTCTCT 57.228 43.478 23.01 0.00 0.00 3.10
35 36 5.124936 GGTTGACTAGTCTCTTTCTCCTCTC 59.875 48.000 23.01 0.00 0.00 3.20
36 37 5.014202 GGTTGACTAGTCTCTTTCTCCTCT 58.986 45.833 23.01 0.00 0.00 3.69
37 38 5.014202 AGGTTGACTAGTCTCTTTCTCCTC 58.986 45.833 23.01 2.84 0.00 3.71
38 39 4.770010 CAGGTTGACTAGTCTCTTTCTCCT 59.230 45.833 23.01 15.18 0.00 3.69
39 40 4.619628 GCAGGTTGACTAGTCTCTTTCTCC 60.620 50.000 23.01 13.53 0.00 3.71
40 41 4.490743 GCAGGTTGACTAGTCTCTTTCTC 58.509 47.826 23.01 6.63 0.00 2.87
41 42 3.259625 GGCAGGTTGACTAGTCTCTTTCT 59.740 47.826 23.01 10.71 0.00 2.52
42 43 3.591023 GGCAGGTTGACTAGTCTCTTTC 58.409 50.000 23.01 7.86 0.00 2.62
43 44 2.303311 GGGCAGGTTGACTAGTCTCTTT 59.697 50.000 23.01 4.78 0.00 2.52
44 45 1.903183 GGGCAGGTTGACTAGTCTCTT 59.097 52.381 23.01 10.28 0.00 2.85
45 46 1.203187 TGGGCAGGTTGACTAGTCTCT 60.203 52.381 23.01 14.50 0.00 3.10
46 47 1.066787 GTGGGCAGGTTGACTAGTCTC 60.067 57.143 23.01 15.32 0.00 3.36
47 48 0.977395 GTGGGCAGGTTGACTAGTCT 59.023 55.000 23.01 0.19 0.00 3.24
48 49 0.389948 CGTGGGCAGGTTGACTAGTC 60.390 60.000 16.32 16.32 0.00 2.59
49 50 1.119574 ACGTGGGCAGGTTGACTAGT 61.120 55.000 0.00 0.00 0.00 2.57
50 51 0.670546 CACGTGGGCAGGTTGACTAG 60.671 60.000 7.95 0.00 0.00 2.57
51 52 1.369692 CACGTGGGCAGGTTGACTA 59.630 57.895 7.95 0.00 0.00 2.59
52 53 2.111043 CACGTGGGCAGGTTGACT 59.889 61.111 7.95 0.00 0.00 3.41
53 54 2.748058 ATCCACGTGGGCAGGTTGAC 62.748 60.000 33.40 0.00 36.21 3.18
54 55 2.063015 AATCCACGTGGGCAGGTTGA 62.063 55.000 33.40 12.86 36.21 3.18
55 56 1.178534 AAATCCACGTGGGCAGGTTG 61.179 55.000 33.40 6.28 36.21 3.77
56 57 0.469144 AAAATCCACGTGGGCAGGTT 60.469 50.000 33.40 17.40 36.21 3.50
57 58 0.469144 AAAAATCCACGTGGGCAGGT 60.469 50.000 33.40 14.32 36.21 4.00
58 59 2.350738 AAAAATCCACGTGGGCAGG 58.649 52.632 33.40 8.81 36.21 4.85
87 88 1.751927 GGGCTTGCCTGTCAGGATG 60.752 63.158 23.77 11.82 37.67 3.51
88 89 2.679716 GGGCTTGCCTGTCAGGAT 59.320 61.111 23.77 0.00 37.67 3.24
89 90 3.650950 GGGGCTTGCCTGTCAGGA 61.651 66.667 23.77 5.01 37.67 3.86
99 100 3.976701 AATCGACAGGCGGGGCTTG 62.977 63.158 0.00 0.00 41.47 4.01
100 101 3.268103 AAATCGACAGGCGGGGCTT 62.268 57.895 0.00 0.00 41.33 4.35
101 102 3.682292 GAAATCGACAGGCGGGGCT 62.682 63.158 0.00 0.00 41.33 5.19
102 103 3.202706 GAAATCGACAGGCGGGGC 61.203 66.667 0.00 0.00 41.33 5.80
103 104 2.890474 CGAAATCGACAGGCGGGG 60.890 66.667 0.00 0.00 43.02 5.73
104 105 2.622903 TAGCGAAATCGACAGGCGGG 62.623 60.000 7.06 0.00 43.02 6.13
105 106 0.597637 ATAGCGAAATCGACAGGCGG 60.598 55.000 7.06 0.00 43.02 6.13
106 107 1.209128 AATAGCGAAATCGACAGGCG 58.791 50.000 7.06 0.00 43.02 5.52
107 108 3.309954 AGAAAATAGCGAAATCGACAGGC 59.690 43.478 7.06 0.00 43.02 4.85
108 109 4.260375 CCAGAAAATAGCGAAATCGACAGG 60.260 45.833 7.06 0.00 43.02 4.00
109 110 4.260375 CCCAGAAAATAGCGAAATCGACAG 60.260 45.833 7.06 0.00 43.02 3.51
110 111 3.621268 CCCAGAAAATAGCGAAATCGACA 59.379 43.478 7.06 0.00 43.02 4.35
111 112 3.546218 GCCCAGAAAATAGCGAAATCGAC 60.546 47.826 7.06 0.00 43.02 4.20
112 113 2.612212 GCCCAGAAAATAGCGAAATCGA 59.388 45.455 7.06 0.00 43.02 3.59
113 114 2.614057 AGCCCAGAAAATAGCGAAATCG 59.386 45.455 0.00 0.00 43.27 3.34
114 115 5.751243 TTAGCCCAGAAAATAGCGAAATC 57.249 39.130 0.00 0.00 0.00 2.17
115 116 6.330278 GTTTTAGCCCAGAAAATAGCGAAAT 58.670 36.000 0.00 0.00 31.47 2.17
116 117 5.618195 CGTTTTAGCCCAGAAAATAGCGAAA 60.618 40.000 0.00 0.00 0.00 3.46
117 118 4.142773 CGTTTTAGCCCAGAAAATAGCGAA 60.143 41.667 0.00 0.00 0.00 4.70
118 119 3.372822 CGTTTTAGCCCAGAAAATAGCGA 59.627 43.478 0.00 0.00 0.00 4.93
119 120 3.680789 CGTTTTAGCCCAGAAAATAGCG 58.319 45.455 0.00 0.00 0.00 4.26
120 121 3.119637 TGCGTTTTAGCCCAGAAAATAGC 60.120 43.478 0.00 0.00 35.10 2.97
121 122 4.662145 CTGCGTTTTAGCCCAGAAAATAG 58.338 43.478 0.00 0.00 36.02 1.73
122 123 3.119637 GCTGCGTTTTAGCCCAGAAAATA 60.120 43.478 0.00 0.00 35.15 1.40
123 124 2.352715 GCTGCGTTTTAGCCCAGAAAAT 60.353 45.455 0.00 0.00 35.15 1.82
124 125 1.000717 GCTGCGTTTTAGCCCAGAAAA 60.001 47.619 0.00 0.00 35.15 2.29
125 126 0.596082 GCTGCGTTTTAGCCCAGAAA 59.404 50.000 0.00 0.00 35.15 2.52
126 127 1.573829 CGCTGCGTTTTAGCCCAGAA 61.574 55.000 14.93 0.00 37.90 3.02
127 128 2.032634 CGCTGCGTTTTAGCCCAGA 61.033 57.895 14.93 0.00 37.90 3.86
128 129 2.240612 GACGCTGCGTTTTAGCCCAG 62.241 60.000 29.54 0.00 41.37 4.45
129 130 2.281208 ACGCTGCGTTTTAGCCCA 60.281 55.556 23.57 0.00 36.35 5.36
130 131 2.240612 CTGACGCTGCGTTTTAGCCC 62.241 60.000 29.54 14.57 41.37 5.19
131 132 1.132640 CTGACGCTGCGTTTTAGCC 59.867 57.895 29.54 15.31 41.37 3.93
132 133 0.451135 CACTGACGCTGCGTTTTAGC 60.451 55.000 29.54 16.06 41.37 3.09
133 134 0.451135 GCACTGACGCTGCGTTTTAG 60.451 55.000 29.54 25.90 41.37 1.85
134 135 0.878523 AGCACTGACGCTGCGTTTTA 60.879 50.000 29.54 16.89 41.37 1.52
135 136 2.105960 GAGCACTGACGCTGCGTTTT 62.106 55.000 29.54 13.38 44.01 2.43
136 137 2.588877 AGCACTGACGCTGCGTTT 60.589 55.556 29.54 13.75 41.37 3.60
137 138 3.038417 GAGCACTGACGCTGCGTT 61.038 61.111 29.54 12.16 44.01 4.84
152 153 1.488527 GGCTAATCTGTAACGCGGAG 58.511 55.000 12.47 0.11 35.67 4.63
153 154 0.103572 GGGCTAATCTGTAACGCGGA 59.896 55.000 12.47 0.00 36.82 5.54
154 155 0.104304 AGGGCTAATCTGTAACGCGG 59.896 55.000 12.47 0.00 0.00 6.46
155 156 2.787601 TAGGGCTAATCTGTAACGCG 57.212 50.000 3.53 3.53 0.00 6.01
156 157 4.377897 ACAATAGGGCTAATCTGTAACGC 58.622 43.478 0.00 0.00 0.00 4.84
157 158 5.236478 CCAACAATAGGGCTAATCTGTAACG 59.764 44.000 0.00 0.00 0.00 3.18
158 159 6.038271 CACCAACAATAGGGCTAATCTGTAAC 59.962 42.308 0.00 0.00 0.00 2.50
159 160 6.119536 CACCAACAATAGGGCTAATCTGTAA 58.880 40.000 0.00 0.00 0.00 2.41
160 161 5.397447 CCACCAACAATAGGGCTAATCTGTA 60.397 44.000 0.00 0.00 0.00 2.74
161 162 4.526970 CACCAACAATAGGGCTAATCTGT 58.473 43.478 0.00 0.00 0.00 3.41
162 163 3.885297 CCACCAACAATAGGGCTAATCTG 59.115 47.826 0.00 0.00 0.00 2.90
163 164 3.527665 ACCACCAACAATAGGGCTAATCT 59.472 43.478 0.00 0.00 0.00 2.40
164 165 3.898482 ACCACCAACAATAGGGCTAATC 58.102 45.455 0.00 0.00 0.00 1.75
165 166 4.331159 AACCACCAACAATAGGGCTAAT 57.669 40.909 0.00 0.00 0.00 1.73
166 167 3.818295 AACCACCAACAATAGGGCTAA 57.182 42.857 0.00 0.00 0.00 3.09
167 168 3.818295 AAACCACCAACAATAGGGCTA 57.182 42.857 0.00 0.00 0.00 3.93
168 169 2.694616 AAACCACCAACAATAGGGCT 57.305 45.000 0.00 0.00 0.00 5.19
169 170 3.762407 AAAAACCACCAACAATAGGGC 57.238 42.857 0.00 0.00 0.00 5.19
186 187 4.094590 CACATTTGAGGCAAAGCACAAAAA 59.905 37.500 13.91 1.21 38.72 1.94
187 188 3.622163 CACATTTGAGGCAAAGCACAAAA 59.378 39.130 13.91 2.60 38.72 2.44
188 189 3.196463 CACATTTGAGGCAAAGCACAAA 58.804 40.909 12.87 12.87 39.18 2.83
189 190 2.483363 CCACATTTGAGGCAAAGCACAA 60.483 45.455 0.00 0.00 36.76 3.33
190 191 1.068895 CCACATTTGAGGCAAAGCACA 59.931 47.619 0.00 0.00 36.76 4.57
191 192 1.069049 ACCACATTTGAGGCAAAGCAC 59.931 47.619 0.00 0.00 36.76 4.40
192 193 1.412079 ACCACATTTGAGGCAAAGCA 58.588 45.000 0.00 0.00 36.76 3.91
193 194 2.558359 AGTACCACATTTGAGGCAAAGC 59.442 45.455 0.00 0.00 36.76 3.51
194 195 3.820467 TCAGTACCACATTTGAGGCAAAG 59.180 43.478 0.00 0.00 36.76 2.77
195 196 3.826524 TCAGTACCACATTTGAGGCAAA 58.173 40.909 0.00 0.00 37.75 3.68
196 197 3.500448 TCAGTACCACATTTGAGGCAA 57.500 42.857 0.00 0.00 0.00 4.52
197 198 3.264193 AGATCAGTACCACATTTGAGGCA 59.736 43.478 0.00 0.00 0.00 4.75
198 199 3.624861 CAGATCAGTACCACATTTGAGGC 59.375 47.826 0.00 0.00 0.00 4.70
199 200 4.836825 ACAGATCAGTACCACATTTGAGG 58.163 43.478 0.00 0.00 0.00 3.86
200 201 6.313905 GGTAACAGATCAGTACCACATTTGAG 59.686 42.308 12.31 0.00 0.00 3.02
201 202 6.170506 GGTAACAGATCAGTACCACATTTGA 58.829 40.000 12.31 0.00 0.00 2.69
202 203 5.354234 GGGTAACAGATCAGTACCACATTTG 59.646 44.000 16.76 0.00 39.74 2.32
203 204 5.250774 AGGGTAACAGATCAGTACCACATTT 59.749 40.000 16.76 0.00 39.74 2.32
204 205 4.783227 AGGGTAACAGATCAGTACCACATT 59.217 41.667 16.76 2.56 39.74 2.71
205 206 4.362677 AGGGTAACAGATCAGTACCACAT 58.637 43.478 16.76 4.55 39.74 3.21
206 207 3.786553 AGGGTAACAGATCAGTACCACA 58.213 45.455 16.76 0.00 39.74 4.17
207 208 4.954826 ACTAGGGTAACAGATCAGTACCAC 59.045 45.833 16.76 9.32 39.74 4.16
208 209 5.198965 GACTAGGGTAACAGATCAGTACCA 58.801 45.833 16.76 2.38 39.74 3.25
209 210 4.583907 GGACTAGGGTAACAGATCAGTACC 59.416 50.000 9.81 9.81 39.74 3.34
210 211 5.198965 TGGACTAGGGTAACAGATCAGTAC 58.801 45.833 0.00 0.00 39.74 2.73
211 212 5.461516 TGGACTAGGGTAACAGATCAGTA 57.538 43.478 0.00 0.00 39.74 2.74
212 213 4.332683 TGGACTAGGGTAACAGATCAGT 57.667 45.455 0.00 0.00 39.74 3.41
213 214 6.978674 TTATGGACTAGGGTAACAGATCAG 57.021 41.667 0.00 0.00 39.74 2.90
214 215 6.844388 ACATTATGGACTAGGGTAACAGATCA 59.156 38.462 0.00 0.00 39.74 2.92
215 216 7.155328 CACATTATGGACTAGGGTAACAGATC 58.845 42.308 0.00 0.00 39.74 2.75
216 217 6.615726 ACACATTATGGACTAGGGTAACAGAT 59.384 38.462 0.00 0.00 39.74 2.90
217 218 5.962031 ACACATTATGGACTAGGGTAACAGA 59.038 40.000 0.00 0.00 39.74 3.41
218 219 6.049149 CACACATTATGGACTAGGGTAACAG 58.951 44.000 0.00 0.00 39.74 3.16
219 220 5.722441 TCACACATTATGGACTAGGGTAACA 59.278 40.000 0.00 0.00 39.74 2.41
220 221 6.229936 TCACACATTATGGACTAGGGTAAC 57.770 41.667 0.00 0.00 0.00 2.50
221 222 6.613679 TCATCACACATTATGGACTAGGGTAA 59.386 38.462 0.00 0.00 0.00 2.85
222 223 6.140377 TCATCACACATTATGGACTAGGGTA 58.860 40.000 0.00 0.00 0.00 3.69
223 224 4.968719 TCATCACACATTATGGACTAGGGT 59.031 41.667 0.00 0.00 0.00 4.34
224 225 5.551305 TCATCACACATTATGGACTAGGG 57.449 43.478 0.00 0.00 0.00 3.53
225 226 8.347771 CAAAATCATCACACATTATGGACTAGG 58.652 37.037 0.00 0.00 0.00 3.02
226 227 8.347771 CCAAAATCATCACACATTATGGACTAG 58.652 37.037 0.00 0.00 0.00 2.57
227 228 7.285172 CCCAAAATCATCACACATTATGGACTA 59.715 37.037 0.00 0.00 0.00 2.59
228 229 6.097270 CCCAAAATCATCACACATTATGGACT 59.903 38.462 0.00 0.00 0.00 3.85
229 230 6.127366 ACCCAAAATCATCACACATTATGGAC 60.127 38.462 0.00 0.00 0.00 4.02
230 231 5.957168 ACCCAAAATCATCACACATTATGGA 59.043 36.000 0.00 0.00 0.00 3.41
231 232 6.224665 ACCCAAAATCATCACACATTATGG 57.775 37.500 0.00 0.00 0.00 2.74
232 233 9.820725 ATTTACCCAAAATCATCACACATTATG 57.179 29.630 0.00 0.00 32.00 1.90
235 236 9.874205 CTTATTTACCCAAAATCATCACACATT 57.126 29.630 0.00 0.00 38.71 2.71
236 237 9.034800 ACTTATTTACCCAAAATCATCACACAT 57.965 29.630 0.00 0.00 38.71 3.21
237 238 8.415950 ACTTATTTACCCAAAATCATCACACA 57.584 30.769 0.00 0.00 38.71 3.72
238 239 7.696453 CGACTTATTTACCCAAAATCATCACAC 59.304 37.037 0.00 0.00 38.71 3.82
239 240 7.608376 TCGACTTATTTACCCAAAATCATCACA 59.392 33.333 0.00 0.00 38.71 3.58
240 241 7.981142 TCGACTTATTTACCCAAAATCATCAC 58.019 34.615 0.00 0.00 38.71 3.06
241 242 8.746052 ATCGACTTATTTACCCAAAATCATCA 57.254 30.769 0.00 0.00 38.71 3.07
244 245 9.675464 AGTTATCGACTTATTTACCCAAAATCA 57.325 29.630 0.00 0.00 38.71 2.57
247 248 8.238631 GCAAGTTATCGACTTATTTACCCAAAA 58.761 33.333 0.00 0.00 46.75 2.44
248 249 7.390996 TGCAAGTTATCGACTTATTTACCCAAA 59.609 33.333 0.00 0.00 46.75 3.28
249 250 6.879993 TGCAAGTTATCGACTTATTTACCCAA 59.120 34.615 0.00 0.00 46.75 4.12
250 251 6.408035 TGCAAGTTATCGACTTATTTACCCA 58.592 36.000 0.00 0.00 46.75 4.51
251 252 6.511282 GCTGCAAGTTATCGACTTATTTACCC 60.511 42.308 0.00 0.00 46.75 3.69
252 253 6.036735 TGCTGCAAGTTATCGACTTATTTACC 59.963 38.462 0.00 0.00 46.75 2.85
253 254 6.900299 GTGCTGCAAGTTATCGACTTATTTAC 59.100 38.462 2.77 0.00 46.75 2.01
254 255 6.036735 GGTGCTGCAAGTTATCGACTTATTTA 59.963 38.462 2.77 0.00 46.75 1.40
255 256 5.163754 GGTGCTGCAAGTTATCGACTTATTT 60.164 40.000 2.77 0.00 46.75 1.40
256 257 4.332819 GGTGCTGCAAGTTATCGACTTATT 59.667 41.667 2.77 0.00 46.75 1.40
257 258 3.871594 GGTGCTGCAAGTTATCGACTTAT 59.128 43.478 2.77 0.00 46.75 1.73
258 259 3.259064 GGTGCTGCAAGTTATCGACTTA 58.741 45.455 2.77 0.00 46.75 2.24
260 261 1.001974 TGGTGCTGCAAGTTATCGACT 59.998 47.619 2.77 0.00 41.47 4.18
261 262 1.438651 TGGTGCTGCAAGTTATCGAC 58.561 50.000 2.77 0.00 35.30 4.20
262 263 2.076100 CTTGGTGCTGCAAGTTATCGA 58.924 47.619 2.77 0.00 35.30 3.59
263 264 2.076100 TCTTGGTGCTGCAAGTTATCG 58.924 47.619 2.77 0.00 35.30 2.92
294 295 0.803380 GGATGGCACTCATTTTGCGC 60.803 55.000 0.00 0.00 41.18 6.09
301 302 1.341383 GGGACTTTGGATGGCACTCAT 60.341 52.381 0.00 0.00 39.13 2.90
306 307 1.303236 CGTGGGACTTTGGATGGCA 60.303 57.895 0.00 0.00 0.00 4.92
308 309 1.378514 CCCGTGGGACTTTGGATGG 60.379 63.158 0.00 0.00 37.50 3.51
334 335 1.941403 ATTGCATGCACCCTAGCCCT 61.941 55.000 22.58 0.00 0.00 5.19
367 368 4.442052 CCACTACCACCACACAGATAGATG 60.442 50.000 0.00 0.00 0.00 2.90
425 432 1.899437 TTCCGCATCTTTCCCTCGCT 61.899 55.000 0.00 0.00 0.00 4.93
450 457 2.359602 CTGTCCACCCAGCTGCAG 60.360 66.667 10.11 10.11 0.00 4.41
478 518 5.649831 GTGGGCTGATTAGACAAAGAGATTT 59.350 40.000 0.00 0.00 31.64 2.17
521 561 9.868277 TGCATATTTTGATAAGGTTCGAAATTT 57.132 25.926 0.00 0.00 39.40 1.82
522 562 9.868277 TTGCATATTTTGATAAGGTTCGAAATT 57.132 25.926 0.00 0.25 39.40 1.82
523 563 9.868277 TTTGCATATTTTGATAAGGTTCGAAAT 57.132 25.926 0.00 5.32 40.89 2.17
524 564 9.698309 TTTTGCATATTTTGATAAGGTTCGAAA 57.302 25.926 0.00 0.00 34.36 3.46
525 565 9.868277 ATTTTGCATATTTTGATAAGGTTCGAA 57.132 25.926 0.00 0.00 0.00 3.71
526 566 9.868277 AATTTTGCATATTTTGATAAGGTTCGA 57.132 25.926 0.00 0.00 0.00 3.71
554 976 6.366315 TGTCCGAAATATACCAATTTTCCG 57.634 37.500 0.00 0.00 0.00 4.30
559 981 8.770828 CGAAGTAATGTCCGAAATATACCAATT 58.229 33.333 0.00 0.00 0.00 2.32
560 982 7.386848 CCGAAGTAATGTCCGAAATATACCAAT 59.613 37.037 0.00 0.00 0.00 3.16
563 985 6.449698 TCCGAAGTAATGTCCGAAATATACC 58.550 40.000 0.00 0.00 0.00 2.73
564 986 8.530269 AATCCGAAGTAATGTCCGAAATATAC 57.470 34.615 0.00 0.00 0.00 1.47
565 987 9.550406 AAAATCCGAAGTAATGTCCGAAATATA 57.450 29.630 0.00 0.00 0.00 0.86
566 988 8.342634 CAAAATCCGAAGTAATGTCCGAAATAT 58.657 33.333 0.00 0.00 0.00 1.28
567 989 7.549842 TCAAAATCCGAAGTAATGTCCGAAATA 59.450 33.333 0.00 0.00 0.00 1.40
568 990 6.373216 TCAAAATCCGAAGTAATGTCCGAAAT 59.627 34.615 0.00 0.00 0.00 2.17
569 991 5.701750 TCAAAATCCGAAGTAATGTCCGAAA 59.298 36.000 0.00 0.00 0.00 3.46
570 992 5.239351 TCAAAATCCGAAGTAATGTCCGAA 58.761 37.500 0.00 0.00 0.00 4.30
571 993 4.823157 TCAAAATCCGAAGTAATGTCCGA 58.177 39.130 0.00 0.00 0.00 4.55
572 994 4.868171 TCTCAAAATCCGAAGTAATGTCCG 59.132 41.667 0.00 0.00 0.00 4.79
573 995 6.927294 ATCTCAAAATCCGAAGTAATGTCC 57.073 37.500 0.00 0.00 0.00 4.02
663 1085 8.908172 TTTTTAAAGCCAAAATTTCAAAGCAG 57.092 26.923 0.00 0.00 0.00 4.24
688 1110 9.436957 CGCATATTTCAGTAGGGTCTAAAATAT 57.563 33.333 0.00 0.00 31.92 1.28
689 1111 8.644216 TCGCATATTTCAGTAGGGTCTAAAATA 58.356 33.333 0.00 0.00 0.00 1.40
693 1115 6.474140 TTCGCATATTTCAGTAGGGTCTAA 57.526 37.500 0.00 0.00 0.00 2.10
694 1116 6.474140 TTTCGCATATTTCAGTAGGGTCTA 57.526 37.500 0.00 0.00 0.00 2.59
695 1117 5.353394 TTTCGCATATTTCAGTAGGGTCT 57.647 39.130 0.00 0.00 0.00 3.85
696 1118 6.619801 AATTTCGCATATTTCAGTAGGGTC 57.380 37.500 0.00 0.00 0.00 4.46
697 1119 6.601613 TGAAATTTCGCATATTTCAGTAGGGT 59.398 34.615 13.34 0.00 43.41 4.34
704 1126 9.507280 GAAATCTCTGAAATTTCGCATATTTCA 57.493 29.630 25.18 13.80 45.06 2.69
705 1127 9.507280 TGAAATCTCTGAAATTTCGCATATTTC 57.493 29.630 24.35 24.35 43.12 2.17
706 1128 9.294030 GTGAAATCTCTGAAATTTCGCATATTT 57.706 29.630 19.73 14.63 45.94 1.40
707 1129 8.847444 GTGAAATCTCTGAAATTTCGCATATT 57.153 30.769 19.73 7.94 45.94 1.28
712 1134 5.931532 TCAGTGAAATCTCTGAAATTTCGC 58.068 37.500 17.88 17.88 46.54 4.70
721 1143 6.087291 GCAACGAAATTTCAGTGAAATCTCTG 59.913 38.462 27.07 19.30 40.77 3.35
722 1144 6.145535 GCAACGAAATTTCAGTGAAATCTCT 58.854 36.000 27.07 16.53 40.77 3.10
723 1145 5.914635 TGCAACGAAATTTCAGTGAAATCTC 59.085 36.000 27.07 22.51 40.77 2.75
725 1147 6.509317 TTGCAACGAAATTTCAGTGAAATC 57.491 33.333 27.07 17.51 40.77 2.17
726 1148 7.481275 AATTGCAACGAAATTTCAGTGAAAT 57.519 28.000 22.70 22.70 43.07 2.17
730 1152 6.703857 TGAAAATTGCAACGAAATTTCAGTG 58.296 32.000 17.99 14.59 36.46 3.66
731 1153 6.900568 TGAAAATTGCAACGAAATTTCAGT 57.099 29.167 17.99 13.07 36.46 3.41
732 1154 6.628461 GGTTGAAAATTGCAACGAAATTTCAG 59.372 34.615 17.99 12.49 44.92 3.02
734 1156 5.906838 GGGTTGAAAATTGCAACGAAATTTC 59.093 36.000 10.45 8.20 44.92 2.17
735 1157 5.588246 AGGGTTGAAAATTGCAACGAAATTT 59.412 32.000 10.45 0.00 44.92 1.82
737 1159 4.511082 CAGGGTTGAAAATTGCAACGAAAT 59.489 37.500 10.45 0.00 44.92 2.17
738 1160 3.868077 CAGGGTTGAAAATTGCAACGAAA 59.132 39.130 10.45 0.00 44.92 3.46
739 1161 3.452474 CAGGGTTGAAAATTGCAACGAA 58.548 40.909 10.45 0.00 44.92 3.85
741 1163 1.526464 GCAGGGTTGAAAATTGCAACG 59.474 47.619 10.45 0.00 44.92 4.10
742 1164 2.287644 GTGCAGGGTTGAAAATTGCAAC 59.712 45.455 8.31 8.31 40.41 4.17
743 1165 2.170187 AGTGCAGGGTTGAAAATTGCAA 59.830 40.909 0.00 0.00 40.41 4.08
745 1167 2.407090 GAGTGCAGGGTTGAAAATTGC 58.593 47.619 0.00 0.00 33.18 3.56
746 1168 2.607771 CCGAGTGCAGGGTTGAAAATTG 60.608 50.000 0.00 0.00 0.00 2.32
747 1169 1.613437 CCGAGTGCAGGGTTGAAAATT 59.387 47.619 0.00 0.00 0.00 1.82
748 1170 1.247567 CCGAGTGCAGGGTTGAAAAT 58.752 50.000 0.00 0.00 0.00 1.82
749 1171 0.821711 CCCGAGTGCAGGGTTGAAAA 60.822 55.000 1.20 0.00 43.89 2.29
750 1172 1.228124 CCCGAGTGCAGGGTTGAAA 60.228 57.895 1.20 0.00 43.89 2.69
757 1179 2.826777 ATCTTTGGCCCGAGTGCAGG 62.827 60.000 0.00 0.00 0.00 4.85
760 1182 0.171231 GAAATCTTTGGCCCGAGTGC 59.829 55.000 0.00 0.00 0.00 4.40
764 1193 0.035598 TCGTGAAATCTTTGGCCCGA 59.964 50.000 0.00 0.00 0.00 5.14
891 1380 0.961857 TTGAGACTACTGCCGGCGTA 60.962 55.000 23.90 23.52 0.00 4.42
931 1484 1.142748 GTGGGAGGTCGCTCTCATG 59.857 63.158 0.00 0.00 36.11 3.07
932 1485 2.060980 GGTGGGAGGTCGCTCTCAT 61.061 63.158 0.00 0.00 36.11 2.90
1242 1817 1.272781 GGTTCATGAGCTTCTCGTCG 58.727 55.000 9.57 0.00 32.35 5.12
1385 2035 9.743057 TTAATTGCATCATATAAAAGGAAACCG 57.257 29.630 0.00 0.00 0.00 4.44
1461 2123 5.463061 CACGATTAATTTCATCCATTTGGCC 59.537 40.000 0.00 0.00 34.44 5.36
1484 2146 8.415950 TCTCAAGGCCTAAATTGATTAAAACA 57.584 30.769 5.16 0.00 35.04 2.83
1619 2298 0.108585 TCTGAGACCACTTGTTGCCC 59.891 55.000 0.00 0.00 0.00 5.36
1692 2371 3.681034 CGGAGCTTCTTCTTGATGATGGT 60.681 47.826 0.00 4.61 0.00 3.55
1789 2649 2.125310 TGAATACGGCAGTGCGGG 60.125 61.111 24.48 14.45 33.14 6.13
1859 2719 3.043419 CTCTCCGCCGATACCAGG 58.957 66.667 0.00 0.00 0.00 4.45
1865 2725 2.516460 ACGTAGCTCTCCGCCGAT 60.516 61.111 0.00 0.00 40.39 4.18
2063 2927 2.972505 CGCCACCAGTTCAGCGTT 60.973 61.111 0.00 0.00 43.45 4.84
2145 3025 4.003788 CTCTGTTGCCCGGGTCGT 62.004 66.667 24.63 0.00 0.00 4.34
2146 3026 4.760047 CCTCTGTTGCCCGGGTCG 62.760 72.222 24.63 6.32 0.00 4.79
2161 3041 4.070552 GACTCGAACCCGCTGCCT 62.071 66.667 0.00 0.00 35.37 4.75
2201 3081 1.377725 GATCTGGCAGGTGGTGGTG 60.378 63.158 15.73 0.00 0.00 4.17
2255 3135 0.100861 GTCCTAGGGTTCTTCTCGCG 59.899 60.000 9.46 0.00 0.00 5.87
2266 3146 4.037927 TGATAAAGAAGGTGGTCCTAGGG 58.962 47.826 9.46 0.00 44.35 3.53
2291 3171 3.473647 TGAGGGCCTGCCGATCTG 61.474 66.667 12.95 0.00 36.85 2.90
2314 3194 2.437359 ATGAGAAGCCAGCGGTGC 60.437 61.111 9.63 4.96 0.00 5.01
2340 3220 6.133356 CCCTTTTCTACTAGTGGAGATCTCT 58.867 44.000 21.81 5.46 0.00 3.10
2342 3222 5.212745 CCCCTTTTCTACTAGTGGAGATCT 58.787 45.833 9.07 0.00 0.00 2.75
2343 3223 4.202274 GCCCCTTTTCTACTAGTGGAGATC 60.202 50.000 9.07 0.00 0.00 2.75
2344 3224 3.712218 GCCCCTTTTCTACTAGTGGAGAT 59.288 47.826 9.07 0.00 0.00 2.75
2345 3225 3.105283 GCCCCTTTTCTACTAGTGGAGA 58.895 50.000 9.07 1.98 0.00 3.71
2346 3226 3.108376 AGCCCCTTTTCTACTAGTGGAG 58.892 50.000 9.07 0.00 0.00 3.86
2347 3227 3.200958 AGCCCCTTTTCTACTAGTGGA 57.799 47.619 4.58 4.58 0.00 4.02
2348 3228 4.262617 GAAAGCCCCTTTTCTACTAGTGG 58.737 47.826 5.39 1.87 33.49 4.00
2350 3230 5.780958 ATGAAAGCCCCTTTTCTACTAGT 57.219 39.130 0.00 0.00 37.81 2.57
2351 3231 5.294552 CGAATGAAAGCCCCTTTTCTACTAG 59.705 44.000 0.00 0.00 37.81 2.57
2352 3232 5.183228 CGAATGAAAGCCCCTTTTCTACTA 58.817 41.667 0.90 0.00 37.81 1.82
2353 3233 4.010349 CGAATGAAAGCCCCTTTTCTACT 58.990 43.478 0.90 0.00 37.81 2.57
2354 3234 3.128764 CCGAATGAAAGCCCCTTTTCTAC 59.871 47.826 0.00 0.00 37.81 2.59
2355 3235 3.352648 CCGAATGAAAGCCCCTTTTCTA 58.647 45.455 0.00 0.00 37.81 2.10
2356 3236 2.171003 CCGAATGAAAGCCCCTTTTCT 58.829 47.619 0.00 0.00 37.81 2.52
2357 3237 1.204704 CCCGAATGAAAGCCCCTTTTC 59.795 52.381 0.00 0.00 33.49 2.29
2358 3238 1.266178 CCCGAATGAAAGCCCCTTTT 58.734 50.000 0.00 0.00 33.49 2.27
2359 3239 0.114364 ACCCGAATGAAAGCCCCTTT 59.886 50.000 0.00 0.00 36.29 3.11
2360 3240 0.323451 GACCCGAATGAAAGCCCCTT 60.323 55.000 0.00 0.00 0.00 3.95
2361 3241 1.208165 AGACCCGAATGAAAGCCCCT 61.208 55.000 0.00 0.00 0.00 4.79
2362 3242 1.032114 CAGACCCGAATGAAAGCCCC 61.032 60.000 0.00 0.00 0.00 5.80
2363 3243 1.032114 CCAGACCCGAATGAAAGCCC 61.032 60.000 0.00 0.00 0.00 5.19
2364 3244 0.322546 ACCAGACCCGAATGAAAGCC 60.323 55.000 0.00 0.00 0.00 4.35
2365 3245 1.087501 GACCAGACCCGAATGAAAGC 58.912 55.000 0.00 0.00 0.00 3.51
2366 3246 2.350522 CTGACCAGACCCGAATGAAAG 58.649 52.381 0.00 0.00 0.00 2.62
2367 3247 1.610624 GCTGACCAGACCCGAATGAAA 60.611 52.381 0.47 0.00 0.00 2.69
2368 3248 0.036388 GCTGACCAGACCCGAATGAA 60.036 55.000 0.47 0.00 0.00 2.57
2369 3249 1.596934 GCTGACCAGACCCGAATGA 59.403 57.895 0.47 0.00 0.00 2.57
2370 3250 1.450312 GGCTGACCAGACCCGAATG 60.450 63.158 0.47 0.00 35.26 2.67
2371 3251 2.990479 GGCTGACCAGACCCGAAT 59.010 61.111 0.47 0.00 35.26 3.34
2381 3261 2.440980 GGGCTCAATGGGCTGACC 60.441 66.667 4.63 0.00 40.81 4.02
2382 3262 1.751927 CAGGGCTCAATGGGCTGAC 60.752 63.158 4.63 0.00 0.00 3.51
2383 3263 2.679092 CAGGGCTCAATGGGCTGA 59.321 61.111 4.63 0.00 0.00 4.26
2384 3264 3.145551 GCAGGGCTCAATGGGCTG 61.146 66.667 4.63 0.00 0.00 4.85
2385 3265 3.345028 AGCAGGGCTCAATGGGCT 61.345 61.111 4.63 0.00 30.62 5.19
2520 3401 8.645814 TTTCGATCAGGGTACTGTACATATAT 57.354 34.615 18.79 7.39 45.14 0.86
2525 3406 5.471556 TTTTTCGATCAGGGTACTGTACA 57.528 39.130 18.79 0.00 45.14 2.90
2593 3476 1.354337 GAGCTGCTCGCGTGAATGAA 61.354 55.000 14.68 0.00 45.59 2.57
2764 3647 0.462225 CCACGAGCGAGACTAGAGGA 60.462 60.000 0.00 0.00 34.37 3.71
3007 3904 0.298707 CGAGGAAATGCACGATCACG 59.701 55.000 0.00 0.00 45.75 4.35
3009 3906 1.420641 CGCGAGGAAATGCACGATCA 61.421 55.000 0.00 0.00 0.00 2.92
3019 3916 2.761559 TCACTTTCAATCGCGAGGAAA 58.238 42.857 26.85 26.85 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.