Multiple sequence alignment - TraesCS2A01G152800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G152800 chr2A 100.000 2548 0 0 1 2548 100835469 100838016 0.000000e+00 4706
1 TraesCS2A01G152800 chr2A 93.195 529 31 3 3 530 100985004 100985528 0.000000e+00 773
2 TraesCS2A01G152800 chr2B 98.841 1984 17 3 570 2548 776222959 776224941 0.000000e+00 3531
3 TraesCS2A01G152800 chr2B 98.792 1986 15 5 570 2548 781094237 781096220 0.000000e+00 3526
4 TraesCS2A01G152800 chr2B 91.389 511 27 9 3 507 152859984 152860483 0.000000e+00 684
5 TraesCS2A01G152800 chr2B 89.513 534 36 9 3 528 153161192 153161713 0.000000e+00 658
6 TraesCS2A01G152800 chr4B 98.791 1985 17 4 570 2548 368430371 368428388 0.000000e+00 3526
7 TraesCS2A01G152800 chr6A 98.789 1982 16 5 573 2548 616131296 616133275 0.000000e+00 3520
8 TraesCS2A01G152800 chr3A 98.740 1984 19 3 571 2548 9952656 9954639 0.000000e+00 3520
9 TraesCS2A01G152800 chr3A 98.498 1998 23 4 557 2548 77771299 77773295 0.000000e+00 3517
10 TraesCS2A01G152800 chr7A 98.738 1981 19 3 573 2548 39015368 39017347 0.000000e+00 3515
11 TraesCS2A01G152800 chr5B 98.738 1981 20 2 573 2548 641128779 641126799 0.000000e+00 3515
12 TraesCS2A01G152800 chr3B 98.738 1981 18 3 573 2548 702857654 702855676 0.000000e+00 3513
13 TraesCS2A01G152800 chr2D 90.449 534 34 9 3 530 101884633 101885155 0.000000e+00 688
14 TraesCS2A01G152800 chr2D 91.692 325 19 3 3 321 101968406 101968728 6.470000e-121 444
15 TraesCS2A01G152800 chr2D 90.404 198 15 3 344 537 101968966 101969163 9.040000e-65 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G152800 chr2A 100835469 100838016 2547 False 4706.0 4706 100.000 1 2548 1 chr2A.!!$F1 2547
1 TraesCS2A01G152800 chr2A 100985004 100985528 524 False 773.0 773 93.195 3 530 1 chr2A.!!$F2 527
2 TraesCS2A01G152800 chr2B 776222959 776224941 1982 False 3531.0 3531 98.841 570 2548 1 chr2B.!!$F3 1978
3 TraesCS2A01G152800 chr2B 781094237 781096220 1983 False 3526.0 3526 98.792 570 2548 1 chr2B.!!$F4 1978
4 TraesCS2A01G152800 chr2B 153161192 153161713 521 False 658.0 658 89.513 3 528 1 chr2B.!!$F2 525
5 TraesCS2A01G152800 chr4B 368428388 368430371 1983 True 3526.0 3526 98.791 570 2548 1 chr4B.!!$R1 1978
6 TraesCS2A01G152800 chr6A 616131296 616133275 1979 False 3520.0 3520 98.789 573 2548 1 chr6A.!!$F1 1975
7 TraesCS2A01G152800 chr3A 9952656 9954639 1983 False 3520.0 3520 98.740 571 2548 1 chr3A.!!$F1 1977
8 TraesCS2A01G152800 chr3A 77771299 77773295 1996 False 3517.0 3517 98.498 557 2548 1 chr3A.!!$F2 1991
9 TraesCS2A01G152800 chr7A 39015368 39017347 1979 False 3515.0 3515 98.738 573 2548 1 chr7A.!!$F1 1975
10 TraesCS2A01G152800 chr5B 641126799 641128779 1980 True 3515.0 3515 98.738 573 2548 1 chr5B.!!$R1 1975
11 TraesCS2A01G152800 chr3B 702855676 702857654 1978 True 3513.0 3513 98.738 573 2548 1 chr3B.!!$R1 1975
12 TraesCS2A01G152800 chr2D 101884633 101885155 522 False 688.0 688 90.449 3 530 1 chr2D.!!$F1 527
13 TraesCS2A01G152800 chr2D 101968406 101969163 757 False 350.5 444 91.048 3 537 2 chr2D.!!$F2 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 363 0.032952 TAGTGAAGCGCGTCCTTTGT 59.967 50.0 20.62 3.39 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1802 0.614812 TCTAGCATGCACTTGGCTCA 59.385 50.0 21.98 0.0 45.15 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.689161 CGGAATCAATAGGCTCACAACAA 59.311 43.478 0.00 0.00 0.00 2.83
102 103 1.398692 AGCAAACCCGTGACAAATGT 58.601 45.000 0.00 0.00 0.00 2.71
103 104 1.066908 AGCAAACCCGTGACAAATGTG 59.933 47.619 0.00 0.00 0.00 3.21
104 105 1.066303 GCAAACCCGTGACAAATGTGA 59.934 47.619 0.00 0.00 0.00 3.58
105 106 2.288152 GCAAACCCGTGACAAATGTGAT 60.288 45.455 0.00 0.00 0.00 3.06
106 107 3.564511 CAAACCCGTGACAAATGTGATC 58.435 45.455 0.00 0.00 0.00 2.92
107 108 2.559698 ACCCGTGACAAATGTGATCA 57.440 45.000 0.00 0.00 0.00 2.92
108 109 2.857483 ACCCGTGACAAATGTGATCAA 58.143 42.857 0.00 0.00 0.00 2.57
109 110 2.552315 ACCCGTGACAAATGTGATCAAC 59.448 45.455 0.00 0.00 0.00 3.18
110 111 2.813754 CCCGTGACAAATGTGATCAACT 59.186 45.455 0.00 0.00 0.00 3.16
111 112 3.253188 CCCGTGACAAATGTGATCAACTT 59.747 43.478 0.00 0.00 0.00 2.66
112 113 4.454161 CCCGTGACAAATGTGATCAACTTA 59.546 41.667 0.00 0.00 0.00 2.24
113 114 5.390885 CCCGTGACAAATGTGATCAACTTAG 60.391 44.000 0.00 0.00 0.00 2.18
114 115 5.179368 CCGTGACAAATGTGATCAACTTAGT 59.821 40.000 0.00 0.00 0.00 2.24
115 116 6.293407 CCGTGACAAATGTGATCAACTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
116 117 7.132213 CGTGACAAATGTGATCAACTTAGTTT 58.868 34.615 0.00 0.00 0.00 2.66
117 118 8.279800 CGTGACAAATGTGATCAACTTAGTTTA 58.720 33.333 0.00 0.00 0.00 2.01
118 119 9.382244 GTGACAAATGTGATCAACTTAGTTTAC 57.618 33.333 0.00 0.00 0.00 2.01
119 120 9.114952 TGACAAATGTGATCAACTTAGTTTACA 57.885 29.630 0.00 0.00 0.00 2.41
120 121 9.382244 GACAAATGTGATCAACTTAGTTTACAC 57.618 33.333 0.00 14.43 0.00 2.90
121 122 8.898761 ACAAATGTGATCAACTTAGTTTACACA 58.101 29.630 21.20 21.20 36.05 3.72
122 123 9.169468 CAAATGTGATCAACTTAGTTTACACAC 57.831 33.333 21.30 16.46 35.24 3.82
123 124 8.445275 AATGTGATCAACTTAGTTTACACACA 57.555 30.769 21.30 19.81 35.24 3.72
124 125 7.851387 TGTGATCAACTTAGTTTACACACAA 57.149 32.000 17.74 6.90 31.28 3.33
125 126 7.690228 TGTGATCAACTTAGTTTACACACAAC 58.310 34.615 17.74 3.22 31.28 3.32
126 127 7.130269 GTGATCAACTTAGTTTACACACAACC 58.870 38.462 15.60 0.00 0.00 3.77
127 128 6.824196 TGATCAACTTAGTTTACACACAACCA 59.176 34.615 0.00 0.00 0.00 3.67
128 129 7.337184 TGATCAACTTAGTTTACACACAACCAA 59.663 33.333 0.00 0.00 0.00 3.67
129 130 7.079182 TCAACTTAGTTTACACACAACCAAG 57.921 36.000 0.00 0.00 31.46 3.61
130 131 6.655848 TCAACTTAGTTTACACACAACCAAGT 59.344 34.615 0.00 0.00 37.59 3.16
131 132 7.175293 TCAACTTAGTTTACACACAACCAAGTT 59.825 33.333 0.00 4.25 42.87 2.66
132 133 7.457024 ACTTAGTTTACACACAACCAAGTTT 57.543 32.000 0.00 0.00 33.85 2.66
133 134 7.888424 ACTTAGTTTACACACAACCAAGTTTT 58.112 30.769 0.00 0.00 33.85 2.43
134 135 8.024865 ACTTAGTTTACACACAACCAAGTTTTC 58.975 33.333 0.00 0.00 33.85 2.29
135 136 6.334102 AGTTTACACACAACCAAGTTTTCA 57.666 33.333 0.00 0.00 0.00 2.69
136 137 6.750148 AGTTTACACACAACCAAGTTTTCAA 58.250 32.000 0.00 0.00 0.00 2.69
137 138 7.382898 AGTTTACACACAACCAAGTTTTCAAT 58.617 30.769 0.00 0.00 0.00 2.57
138 139 7.544217 AGTTTACACACAACCAAGTTTTCAATC 59.456 33.333 0.00 0.00 0.00 2.67
139 140 4.420168 ACACACAACCAAGTTTTCAATCG 58.580 39.130 0.00 0.00 0.00 3.34
140 141 4.156922 ACACACAACCAAGTTTTCAATCGA 59.843 37.500 0.00 0.00 0.00 3.59
141 142 5.098893 CACACAACCAAGTTTTCAATCGAA 58.901 37.500 0.00 0.00 0.00 3.71
142 143 5.748152 CACACAACCAAGTTTTCAATCGAAT 59.252 36.000 0.00 0.00 0.00 3.34
143 144 6.255453 CACACAACCAAGTTTTCAATCGAATT 59.745 34.615 0.00 0.00 0.00 2.17
144 145 6.255453 ACACAACCAAGTTTTCAATCGAATTG 59.745 34.615 0.00 0.00 41.57 2.32
145 146 5.234116 ACAACCAAGTTTTCAATCGAATTGC 59.766 36.000 0.00 0.00 40.05 3.56
146 147 4.306600 ACCAAGTTTTCAATCGAATTGCC 58.693 39.130 0.00 0.00 40.05 4.52
147 148 4.202202 ACCAAGTTTTCAATCGAATTGCCA 60.202 37.500 0.00 0.00 40.05 4.92
148 149 4.931002 CCAAGTTTTCAATCGAATTGCCAT 59.069 37.500 0.00 0.00 40.05 4.40
149 150 5.163933 CCAAGTTTTCAATCGAATTGCCATG 60.164 40.000 0.00 0.00 40.05 3.66
150 151 5.389859 AGTTTTCAATCGAATTGCCATGA 57.610 34.783 0.00 0.00 40.05 3.07
151 152 5.404946 AGTTTTCAATCGAATTGCCATGAG 58.595 37.500 0.00 0.00 40.05 2.90
152 153 5.047802 AGTTTTCAATCGAATTGCCATGAGT 60.048 36.000 0.00 0.00 40.05 3.41
153 154 4.359971 TTCAATCGAATTGCCATGAGTG 57.640 40.909 0.00 0.00 40.05 3.51
154 155 3.346315 TCAATCGAATTGCCATGAGTGT 58.654 40.909 0.00 0.00 40.05 3.55
155 156 4.512484 TCAATCGAATTGCCATGAGTGTA 58.488 39.130 0.00 0.00 40.05 2.90
156 157 4.571984 TCAATCGAATTGCCATGAGTGTAG 59.428 41.667 0.00 0.00 40.05 2.74
157 158 3.610040 TCGAATTGCCATGAGTGTAGT 57.390 42.857 0.00 0.00 0.00 2.73
158 159 4.729227 TCGAATTGCCATGAGTGTAGTA 57.271 40.909 0.00 0.00 0.00 1.82
159 160 5.079689 TCGAATTGCCATGAGTGTAGTAA 57.920 39.130 0.00 0.00 0.00 2.24
160 161 5.670485 TCGAATTGCCATGAGTGTAGTAAT 58.330 37.500 0.00 0.00 0.00 1.89
161 162 6.112734 TCGAATTGCCATGAGTGTAGTAATT 58.887 36.000 0.00 0.00 0.00 1.40
162 163 6.597672 TCGAATTGCCATGAGTGTAGTAATTT 59.402 34.615 0.00 0.00 0.00 1.82
163 164 7.120579 TCGAATTGCCATGAGTGTAGTAATTTT 59.879 33.333 0.00 0.00 0.00 1.82
164 165 7.218773 CGAATTGCCATGAGTGTAGTAATTTTG 59.781 37.037 0.00 0.00 0.00 2.44
165 166 7.701539 ATTGCCATGAGTGTAGTAATTTTGA 57.298 32.000 0.00 0.00 0.00 2.69
166 167 7.517614 TTGCCATGAGTGTAGTAATTTTGAA 57.482 32.000 0.00 0.00 0.00 2.69
167 168 7.144722 TGCCATGAGTGTAGTAATTTTGAAG 57.855 36.000 0.00 0.00 0.00 3.02
168 169 6.714810 TGCCATGAGTGTAGTAATTTTGAAGT 59.285 34.615 0.00 0.00 0.00 3.01
169 170 7.094805 TGCCATGAGTGTAGTAATTTTGAAGTC 60.095 37.037 0.00 0.00 0.00 3.01
170 171 7.094805 GCCATGAGTGTAGTAATTTTGAAGTCA 60.095 37.037 0.00 0.00 0.00 3.41
171 172 8.230486 CCATGAGTGTAGTAATTTTGAAGTCAC 58.770 37.037 0.00 0.00 0.00 3.67
172 173 8.993121 CATGAGTGTAGTAATTTTGAAGTCACT 58.007 33.333 0.00 0.00 36.54 3.41
173 174 8.365399 TGAGTGTAGTAATTTTGAAGTCACTG 57.635 34.615 0.00 0.00 34.49 3.66
174 175 8.201464 TGAGTGTAGTAATTTTGAAGTCACTGA 58.799 33.333 0.00 0.00 34.49 3.41
175 176 9.209175 GAGTGTAGTAATTTTGAAGTCACTGAT 57.791 33.333 0.00 0.00 34.49 2.90
203 204 8.906238 TTAACTAGGAATAAGGTCTTACCACT 57.094 34.615 0.00 0.00 41.95 4.00
204 205 7.809880 AACTAGGAATAAGGTCTTACCACTT 57.190 36.000 0.00 0.00 41.95 3.16
205 206 7.184067 ACTAGGAATAAGGTCTTACCACTTG 57.816 40.000 0.00 0.00 41.95 3.16
206 207 5.437191 AGGAATAAGGTCTTACCACTTGG 57.563 43.478 0.00 0.00 41.95 3.61
207 208 3.945921 GGAATAAGGTCTTACCACTTGGC 59.054 47.826 0.00 0.00 41.95 4.52
208 209 4.324331 GGAATAAGGTCTTACCACTTGGCT 60.324 45.833 0.00 0.00 41.95 4.75
209 210 5.104652 GGAATAAGGTCTTACCACTTGGCTA 60.105 44.000 0.00 0.00 41.95 3.93
210 211 3.983044 AAGGTCTTACCACTTGGCTAG 57.017 47.619 0.00 0.00 41.95 3.42
211 212 2.903926 AGGTCTTACCACTTGGCTAGT 58.096 47.619 0.00 0.00 41.95 2.57
212 213 4.057063 AGGTCTTACCACTTGGCTAGTA 57.943 45.455 0.24 0.00 41.95 1.82
213 214 3.768215 AGGTCTTACCACTTGGCTAGTAC 59.232 47.826 0.24 0.00 41.95 2.73
214 215 3.428589 GGTCTTACCACTTGGCTAGTACG 60.429 52.174 0.24 0.00 38.42 3.67
215 216 3.192212 GTCTTACCACTTGGCTAGTACGT 59.808 47.826 0.24 3.99 39.32 3.57
216 217 4.396166 GTCTTACCACTTGGCTAGTACGTA 59.604 45.833 0.24 3.05 39.32 3.57
217 218 4.396166 TCTTACCACTTGGCTAGTACGTAC 59.604 45.833 18.10 18.10 39.32 3.67
218 219 2.800250 ACCACTTGGCTAGTACGTACT 58.200 47.619 29.62 29.62 39.32 2.73
219 220 2.490903 ACCACTTGGCTAGTACGTACTG 59.509 50.000 33.23 23.81 39.32 2.74
220 221 2.490903 CCACTTGGCTAGTACGTACTGT 59.509 50.000 33.23 20.41 37.10 3.55
221 222 3.057033 CCACTTGGCTAGTACGTACTGTT 60.057 47.826 33.23 14.05 37.10 3.16
222 223 4.553323 CACTTGGCTAGTACGTACTGTTT 58.447 43.478 33.23 13.70 37.10 2.83
223 224 4.986659 CACTTGGCTAGTACGTACTGTTTT 59.013 41.667 33.23 13.34 37.10 2.43
224 225 6.151691 CACTTGGCTAGTACGTACTGTTTTA 58.848 40.000 33.23 15.47 37.10 1.52
225 226 6.810182 CACTTGGCTAGTACGTACTGTTTTAT 59.190 38.462 33.23 11.94 37.10 1.40
226 227 7.008992 CACTTGGCTAGTACGTACTGTTTTATC 59.991 40.741 33.23 17.22 37.10 1.75
227 228 6.513806 TGGCTAGTACGTACTGTTTTATCA 57.486 37.500 33.23 19.12 37.10 2.15
228 229 6.558009 TGGCTAGTACGTACTGTTTTATCAG 58.442 40.000 33.23 21.81 40.80 2.90
229 230 5.458126 GGCTAGTACGTACTGTTTTATCAGC 59.542 44.000 33.23 28.38 38.84 4.26
230 231 6.264088 GCTAGTACGTACTGTTTTATCAGCT 58.736 40.000 33.23 9.17 38.84 4.24
231 232 6.750963 GCTAGTACGTACTGTTTTATCAGCTT 59.249 38.462 33.23 8.76 38.84 3.74
232 233 7.275123 GCTAGTACGTACTGTTTTATCAGCTTT 59.725 37.037 33.23 8.15 38.84 3.51
233 234 7.578169 AGTACGTACTGTTTTATCAGCTTTC 57.422 36.000 26.87 0.00 38.84 2.62
234 235 5.857822 ACGTACTGTTTTATCAGCTTTCC 57.142 39.130 0.00 0.00 38.84 3.13
235 236 4.387862 ACGTACTGTTTTATCAGCTTTCCG 59.612 41.667 0.00 0.00 38.84 4.30
236 237 4.624024 CGTACTGTTTTATCAGCTTTCCGA 59.376 41.667 0.00 0.00 38.84 4.55
237 238 5.291128 CGTACTGTTTTATCAGCTTTCCGAT 59.709 40.000 0.00 0.00 38.84 4.18
238 239 6.183360 CGTACTGTTTTATCAGCTTTCCGATT 60.183 38.462 0.00 0.00 38.84 3.34
239 240 6.575162 ACTGTTTTATCAGCTTTCCGATTT 57.425 33.333 0.00 0.00 38.84 2.17
240 241 6.612306 ACTGTTTTATCAGCTTTCCGATTTC 58.388 36.000 0.00 0.00 38.84 2.17
241 242 6.431234 ACTGTTTTATCAGCTTTCCGATTTCT 59.569 34.615 0.00 0.00 38.84 2.52
242 243 7.606456 ACTGTTTTATCAGCTTTCCGATTTCTA 59.394 33.333 0.00 0.00 38.84 2.10
243 244 8.330466 TGTTTTATCAGCTTTCCGATTTCTAA 57.670 30.769 0.00 0.00 0.00 2.10
244 245 8.788806 TGTTTTATCAGCTTTCCGATTTCTAAA 58.211 29.630 0.00 0.00 0.00 1.85
245 246 9.620660 GTTTTATCAGCTTTCCGATTTCTAAAA 57.379 29.630 0.00 0.00 0.00 1.52
250 251 8.561738 TCAGCTTTCCGATTTCTAAAAATAGT 57.438 30.769 0.00 0.00 35.21 2.12
251 252 9.661563 TCAGCTTTCCGATTTCTAAAAATAGTA 57.338 29.630 0.00 0.00 35.21 1.82
252 253 9.704098 CAGCTTTCCGATTTCTAAAAATAGTAC 57.296 33.333 0.00 0.00 35.21 2.73
253 254 9.668497 AGCTTTCCGATTTCTAAAAATAGTACT 57.332 29.630 0.00 0.00 35.21 2.73
271 272 9.866798 AATAGTACTAAAAGACTAAGGTTTCCG 57.133 33.333 6.70 0.00 32.11 4.30
272 273 7.295322 AGTACTAAAAGACTAAGGTTTCCGT 57.705 36.000 0.00 0.00 0.00 4.69
273 274 7.374272 AGTACTAAAAGACTAAGGTTTCCGTC 58.626 38.462 0.00 0.00 0.00 4.79
274 275 6.416631 ACTAAAAGACTAAGGTTTCCGTCT 57.583 37.500 0.00 0.00 38.29 4.18
275 276 6.824553 ACTAAAAGACTAAGGTTTCCGTCTT 58.175 36.000 0.00 0.00 45.64 3.01
278 279 3.400255 AGACTAAGGTTTCCGTCTTTGC 58.600 45.455 0.00 0.00 33.21 3.68
279 280 3.135994 GACTAAGGTTTCCGTCTTTGCA 58.864 45.455 0.00 0.00 0.00 4.08
280 281 3.751518 ACTAAGGTTTCCGTCTTTGCAT 58.248 40.909 0.00 0.00 0.00 3.96
281 282 4.901868 ACTAAGGTTTCCGTCTTTGCATA 58.098 39.130 0.00 0.00 0.00 3.14
282 283 5.497474 ACTAAGGTTTCCGTCTTTGCATAT 58.503 37.500 0.00 0.00 0.00 1.78
283 284 4.965119 AAGGTTTCCGTCTTTGCATATC 57.035 40.909 0.00 0.00 0.00 1.63
284 285 4.222124 AGGTTTCCGTCTTTGCATATCT 57.778 40.909 0.00 0.00 0.00 1.98
285 286 5.353394 AGGTTTCCGTCTTTGCATATCTA 57.647 39.130 0.00 0.00 0.00 1.98
286 287 5.360591 AGGTTTCCGTCTTTGCATATCTAG 58.639 41.667 0.00 0.00 0.00 2.43
287 288 4.024809 GGTTTCCGTCTTTGCATATCTAGC 60.025 45.833 0.00 0.00 0.00 3.42
288 289 3.386768 TCCGTCTTTGCATATCTAGCC 57.613 47.619 0.00 0.00 0.00 3.93
289 290 2.061773 CCGTCTTTGCATATCTAGCCG 58.938 52.381 0.00 0.00 0.00 5.52
290 291 2.288213 CCGTCTTTGCATATCTAGCCGA 60.288 50.000 0.00 0.00 0.00 5.54
291 292 2.983136 CGTCTTTGCATATCTAGCCGAG 59.017 50.000 0.00 0.00 0.00 4.63
292 293 3.304726 CGTCTTTGCATATCTAGCCGAGA 60.305 47.826 0.00 0.00 39.01 4.04
294 295 5.233988 GTCTTTGCATATCTAGCCGAGATT 58.766 41.667 4.17 0.00 42.70 2.40
295 296 5.698545 GTCTTTGCATATCTAGCCGAGATTT 59.301 40.000 4.17 0.00 42.70 2.17
296 297 6.203723 GTCTTTGCATATCTAGCCGAGATTTT 59.796 38.462 4.17 0.00 42.70 1.82
297 298 6.425114 TCTTTGCATATCTAGCCGAGATTTTC 59.575 38.462 4.17 0.00 42.70 2.29
298 299 4.569943 TGCATATCTAGCCGAGATTTTCC 58.430 43.478 4.17 0.00 42.70 3.13
299 300 4.284490 TGCATATCTAGCCGAGATTTTCCT 59.716 41.667 4.17 0.00 42.70 3.36
300 301 4.629200 GCATATCTAGCCGAGATTTTCCTG 59.371 45.833 4.17 0.00 42.70 3.86
301 302 5.567623 GCATATCTAGCCGAGATTTTCCTGA 60.568 44.000 4.17 0.00 42.70 3.86
302 303 6.459066 CATATCTAGCCGAGATTTTCCTGAA 58.541 40.000 4.17 0.00 42.70 3.02
303 304 4.819105 TCTAGCCGAGATTTTCCTGAAA 57.181 40.909 0.00 0.00 0.00 2.69
304 305 5.160607 TCTAGCCGAGATTTTCCTGAAAA 57.839 39.130 7.45 7.45 43.48 2.29
305 306 4.935808 TCTAGCCGAGATTTTCCTGAAAAC 59.064 41.667 7.18 2.95 42.32 2.43
306 307 2.484264 AGCCGAGATTTTCCTGAAAACG 59.516 45.455 7.18 6.96 42.32 3.60
307 308 2.225727 GCCGAGATTTTCCTGAAAACGT 59.774 45.455 7.18 0.00 42.32 3.99
308 309 3.667166 GCCGAGATTTTCCTGAAAACGTC 60.667 47.826 7.18 6.49 42.32 4.34
309 310 3.120304 CCGAGATTTTCCTGAAAACGTCC 60.120 47.826 7.18 0.00 42.32 4.79
310 311 3.746492 CGAGATTTTCCTGAAAACGTCCT 59.254 43.478 7.18 3.50 42.32 3.85
311 312 4.213482 CGAGATTTTCCTGAAAACGTCCTT 59.787 41.667 7.18 0.00 42.32 3.36
312 313 5.438761 AGATTTTCCTGAAAACGTCCTTG 57.561 39.130 7.18 0.00 42.32 3.61
313 314 5.130350 AGATTTTCCTGAAAACGTCCTTGA 58.870 37.500 7.18 0.00 42.32 3.02
314 315 5.592688 AGATTTTCCTGAAAACGTCCTTGAA 59.407 36.000 7.18 0.00 42.32 2.69
315 316 5.646577 TTTTCCTGAAAACGTCCTTGAAA 57.353 34.783 1.04 0.00 35.57 2.69
316 317 5.646577 TTTCCTGAAAACGTCCTTGAAAA 57.353 34.783 0.00 0.00 0.00 2.29
317 318 4.893424 TCCTGAAAACGTCCTTGAAAAG 57.107 40.909 0.00 0.00 45.69 2.27
318 319 4.266714 TCCTGAAAACGTCCTTGAAAAGT 58.733 39.130 0.00 0.00 44.25 2.66
319 320 4.095782 TCCTGAAAACGTCCTTGAAAAGTG 59.904 41.667 0.00 0.00 44.25 3.16
320 321 4.142469 CCTGAAAACGTCCTTGAAAAGTGT 60.142 41.667 0.00 0.00 44.25 3.55
321 322 5.065474 CCTGAAAACGTCCTTGAAAAGTGTA 59.935 40.000 0.00 0.00 44.25 2.90
322 323 6.114221 TGAAAACGTCCTTGAAAAGTGTAG 57.886 37.500 0.00 0.00 44.25 2.74
323 324 4.547406 AAACGTCCTTGAAAAGTGTAGC 57.453 40.909 0.00 0.00 44.25 3.58
324 325 3.470645 ACGTCCTTGAAAAGTGTAGCT 57.529 42.857 0.00 0.00 44.25 3.32
325 326 3.391049 ACGTCCTTGAAAAGTGTAGCTC 58.609 45.455 0.00 0.00 44.25 4.09
326 327 3.181469 ACGTCCTTGAAAAGTGTAGCTCA 60.181 43.478 0.00 0.00 44.25 4.26
327 328 3.430218 CGTCCTTGAAAAGTGTAGCTCAG 59.570 47.826 0.00 0.00 44.25 3.35
328 329 3.748568 GTCCTTGAAAAGTGTAGCTCAGG 59.251 47.826 0.00 0.00 44.25 3.86
329 330 3.391296 TCCTTGAAAAGTGTAGCTCAGGT 59.609 43.478 0.00 0.00 44.25 4.00
330 331 4.137543 CCTTGAAAAGTGTAGCTCAGGTT 58.862 43.478 0.00 0.00 44.25 3.50
331 332 4.214332 CCTTGAAAAGTGTAGCTCAGGTTC 59.786 45.833 0.00 0.00 44.25 3.62
332 333 4.415881 TGAAAAGTGTAGCTCAGGTTCA 57.584 40.909 0.00 0.00 0.00 3.18
333 334 4.973168 TGAAAAGTGTAGCTCAGGTTCAT 58.027 39.130 0.00 0.00 0.00 2.57
334 335 6.109156 TGAAAAGTGTAGCTCAGGTTCATA 57.891 37.500 0.00 0.00 0.00 2.15
335 336 6.711277 TGAAAAGTGTAGCTCAGGTTCATAT 58.289 36.000 0.00 0.00 0.00 1.78
336 337 7.168219 TGAAAAGTGTAGCTCAGGTTCATATT 58.832 34.615 0.00 0.00 0.00 1.28
337 338 7.665559 TGAAAAGTGTAGCTCAGGTTCATATTT 59.334 33.333 0.00 0.00 0.00 1.40
338 339 9.162764 GAAAAGTGTAGCTCAGGTTCATATTTA 57.837 33.333 0.00 0.00 0.00 1.40
339 340 8.723942 AAAGTGTAGCTCAGGTTCATATTTAG 57.276 34.615 0.00 0.00 0.00 1.85
340 341 7.661536 AGTGTAGCTCAGGTTCATATTTAGA 57.338 36.000 0.00 0.00 0.00 2.10
341 342 8.079211 AGTGTAGCTCAGGTTCATATTTAGAA 57.921 34.615 0.00 0.00 0.00 2.10
342 343 8.540388 AGTGTAGCTCAGGTTCATATTTAGAAA 58.460 33.333 0.00 0.00 0.00 2.52
343 344 9.331282 GTGTAGCTCAGGTTCATATTTAGAAAT 57.669 33.333 0.00 0.00 0.00 2.17
347 348 9.553064 AGCTCAGGTTCATATTTAGAAATAGTG 57.447 33.333 1.55 1.40 34.62 2.74
348 349 9.547753 GCTCAGGTTCATATTTAGAAATAGTGA 57.452 33.333 1.55 3.26 34.62 3.41
352 353 9.046296 AGGTTCATATTTAGAAATAGTGAAGCG 57.954 33.333 22.84 0.00 42.33 4.68
353 354 7.798982 GGTTCATATTTAGAAATAGTGAAGCGC 59.201 37.037 19.38 0.00 37.28 5.92
354 355 7.105494 TCATATTTAGAAATAGTGAAGCGCG 57.895 36.000 0.00 0.00 34.62 6.86
355 356 6.700081 TCATATTTAGAAATAGTGAAGCGCGT 59.300 34.615 8.43 0.00 34.62 6.01
356 357 4.835199 TTTAGAAATAGTGAAGCGCGTC 57.165 40.909 16.84 16.84 0.00 5.19
357 358 1.641577 AGAAATAGTGAAGCGCGTCC 58.358 50.000 20.62 11.72 0.00 4.79
358 359 1.204941 AGAAATAGTGAAGCGCGTCCT 59.795 47.619 20.62 17.79 0.00 3.85
359 360 2.000447 GAAATAGTGAAGCGCGTCCTT 59.000 47.619 20.62 10.94 0.00 3.36
360 361 2.094762 AATAGTGAAGCGCGTCCTTT 57.905 45.000 20.62 9.40 0.00 3.11
361 362 1.359848 ATAGTGAAGCGCGTCCTTTG 58.640 50.000 20.62 0.00 0.00 2.77
362 363 0.032952 TAGTGAAGCGCGTCCTTTGT 59.967 50.000 20.62 3.39 0.00 2.83
363 364 1.204312 GTGAAGCGCGTCCTTTGTC 59.796 57.895 20.62 1.20 0.00 3.18
364 365 2.307309 TGAAGCGCGTCCTTTGTCG 61.307 57.895 20.62 0.00 0.00 4.35
370 371 4.655527 CGTCCTTTGTCGCTCAGT 57.344 55.556 0.00 0.00 0.00 3.41
371 372 2.435741 CGTCCTTTGTCGCTCAGTC 58.564 57.895 0.00 0.00 0.00 3.51
372 373 1.337817 CGTCCTTTGTCGCTCAGTCG 61.338 60.000 0.00 0.00 0.00 4.18
373 374 1.372997 TCCTTTGTCGCTCAGTCGC 60.373 57.895 0.00 0.00 0.00 5.19
374 375 1.664649 CCTTTGTCGCTCAGTCGCA 60.665 57.895 0.00 0.00 0.00 5.10
375 376 1.016130 CCTTTGTCGCTCAGTCGCAT 61.016 55.000 0.00 0.00 0.00 4.73
376 377 1.629013 CTTTGTCGCTCAGTCGCATA 58.371 50.000 0.00 0.00 0.00 3.14
377 378 1.992667 CTTTGTCGCTCAGTCGCATAA 59.007 47.619 0.00 0.00 0.00 1.90
378 379 2.293677 TTGTCGCTCAGTCGCATAAT 57.706 45.000 0.00 0.00 0.00 1.28
379 380 2.293677 TGTCGCTCAGTCGCATAATT 57.706 45.000 0.00 0.00 0.00 1.40
380 381 2.193447 TGTCGCTCAGTCGCATAATTC 58.807 47.619 0.00 0.00 0.00 2.17
381 382 2.193447 GTCGCTCAGTCGCATAATTCA 58.807 47.619 0.00 0.00 0.00 2.57
382 383 2.603110 GTCGCTCAGTCGCATAATTCAA 59.397 45.455 0.00 0.00 0.00 2.69
383 384 2.603110 TCGCTCAGTCGCATAATTCAAC 59.397 45.455 0.00 0.00 0.00 3.18
384 385 2.595188 CGCTCAGTCGCATAATTCAACG 60.595 50.000 0.00 0.00 0.00 4.10
385 386 2.603110 GCTCAGTCGCATAATTCAACGA 59.397 45.455 0.00 0.00 0.00 3.85
389 390 3.304382 GTCGCATAATTCAACGACCAG 57.696 47.619 13.22 0.00 46.84 4.00
390 391 1.663643 TCGCATAATTCAACGACCAGC 59.336 47.619 0.00 0.00 0.00 4.85
391 392 1.665679 CGCATAATTCAACGACCAGCT 59.334 47.619 0.00 0.00 0.00 4.24
392 393 2.285834 CGCATAATTCAACGACCAGCTC 60.286 50.000 0.00 0.00 0.00 4.09
393 394 2.939103 GCATAATTCAACGACCAGCTCT 59.061 45.455 0.00 0.00 0.00 4.09
394 395 3.375299 GCATAATTCAACGACCAGCTCTT 59.625 43.478 0.00 0.00 0.00 2.85
395 396 4.570772 GCATAATTCAACGACCAGCTCTTA 59.429 41.667 0.00 0.00 0.00 2.10
396 397 5.064707 GCATAATTCAACGACCAGCTCTTAA 59.935 40.000 0.00 0.00 0.00 1.85
397 398 6.238484 GCATAATTCAACGACCAGCTCTTAAT 60.238 38.462 0.00 0.00 0.00 1.40
398 399 5.803020 AATTCAACGACCAGCTCTTAATC 57.197 39.130 0.00 0.00 0.00 1.75
399 400 3.953712 TCAACGACCAGCTCTTAATCA 57.046 42.857 0.00 0.00 0.00 2.57
400 401 4.265904 TCAACGACCAGCTCTTAATCAA 57.734 40.909 0.00 0.00 0.00 2.57
401 402 4.637276 TCAACGACCAGCTCTTAATCAAA 58.363 39.130 0.00 0.00 0.00 2.69
402 403 5.245531 TCAACGACCAGCTCTTAATCAAAT 58.754 37.500 0.00 0.00 0.00 2.32
403 404 5.705441 TCAACGACCAGCTCTTAATCAAATT 59.295 36.000 0.00 0.00 0.00 1.82
404 405 5.551760 ACGACCAGCTCTTAATCAAATTG 57.448 39.130 0.00 0.00 0.00 2.32
405 406 4.142600 ACGACCAGCTCTTAATCAAATTGC 60.143 41.667 0.00 0.00 0.00 3.56
406 407 4.676546 GACCAGCTCTTAATCAAATTGCC 58.323 43.478 0.00 0.00 0.00 4.52
407 408 4.088634 ACCAGCTCTTAATCAAATTGCCA 58.911 39.130 0.00 0.00 0.00 4.92
408 409 4.713321 ACCAGCTCTTAATCAAATTGCCAT 59.287 37.500 0.00 0.00 0.00 4.40
409 410 5.188359 ACCAGCTCTTAATCAAATTGCCATT 59.812 36.000 0.00 0.00 0.00 3.16
410 411 5.522460 CCAGCTCTTAATCAAATTGCCATTG 59.478 40.000 0.00 0.00 0.00 2.82
411 412 6.334989 CAGCTCTTAATCAAATTGCCATTGA 58.665 36.000 0.00 0.00 40.76 2.57
412 413 6.814644 CAGCTCTTAATCAAATTGCCATTGAA 59.185 34.615 0.83 0.00 39.98 2.69
413 414 7.332430 CAGCTCTTAATCAAATTGCCATTGAAA 59.668 33.333 0.83 0.00 39.98 2.69
414 415 7.548075 AGCTCTTAATCAAATTGCCATTGAAAG 59.452 33.333 0.83 2.21 39.98 2.62
415 416 7.332678 GCTCTTAATCAAATTGCCATTGAAAGT 59.667 33.333 0.83 0.00 39.98 2.66
416 417 9.859427 CTCTTAATCAAATTGCCATTGAAAGTA 57.141 29.630 0.83 0.00 39.98 2.24
419 420 9.770097 TTAATCAAATTGCCATTGAAAGTAACA 57.230 25.926 0.83 0.00 39.98 2.41
420 421 8.851541 AATCAAATTGCCATTGAAAGTAACAT 57.148 26.923 0.83 0.00 39.98 2.71
421 422 7.887996 TCAAATTGCCATTGAAAGTAACATC 57.112 32.000 0.00 0.00 34.04 3.06
422 423 7.440198 TCAAATTGCCATTGAAAGTAACATCA 58.560 30.769 0.00 0.00 34.04 3.07
423 424 7.384660 TCAAATTGCCATTGAAAGTAACATCAC 59.615 33.333 0.00 0.00 34.04 3.06
424 425 5.781210 TTGCCATTGAAAGTAACATCACA 57.219 34.783 0.00 0.00 0.00 3.58
425 426 5.375417 TGCCATTGAAAGTAACATCACAG 57.625 39.130 0.00 0.00 0.00 3.66
426 427 4.826733 TGCCATTGAAAGTAACATCACAGT 59.173 37.500 0.00 0.00 0.00 3.55
427 428 5.301551 TGCCATTGAAAGTAACATCACAGTT 59.698 36.000 0.00 0.00 35.55 3.16
428 429 6.183360 TGCCATTGAAAGTAACATCACAGTTT 60.183 34.615 0.00 0.00 33.07 2.66
429 430 6.363357 GCCATTGAAAGTAACATCACAGTTTC 59.637 38.462 0.00 0.00 35.54 2.78
430 431 7.651808 CCATTGAAAGTAACATCACAGTTTCT 58.348 34.615 0.00 0.00 35.84 2.52
431 432 7.805071 CCATTGAAAGTAACATCACAGTTTCTC 59.195 37.037 0.00 0.00 35.84 2.87
432 433 8.562892 CATTGAAAGTAACATCACAGTTTCTCT 58.437 33.333 0.00 0.00 35.84 3.10
433 434 8.506168 TTGAAAGTAACATCACAGTTTCTCTT 57.494 30.769 0.00 0.00 35.84 2.85
434 435 8.506168 TGAAAGTAACATCACAGTTTCTCTTT 57.494 30.769 0.00 0.00 35.84 2.52
435 436 9.607988 TGAAAGTAACATCACAGTTTCTCTTTA 57.392 29.630 0.00 0.00 35.84 1.85
439 440 9.003658 AGTAACATCACAGTTTCTCTTTATTGG 57.996 33.333 0.00 0.00 33.07 3.16
440 441 8.999431 GTAACATCACAGTTTCTCTTTATTGGA 58.001 33.333 0.00 0.00 33.07 3.53
441 442 7.440523 ACATCACAGTTTCTCTTTATTGGAC 57.559 36.000 0.00 0.00 0.00 4.02
442 443 6.431234 ACATCACAGTTTCTCTTTATTGGACC 59.569 38.462 0.00 0.00 0.00 4.46
443 444 5.935945 TCACAGTTTCTCTTTATTGGACCA 58.064 37.500 0.00 0.00 0.00 4.02
444 445 5.763204 TCACAGTTTCTCTTTATTGGACCAC 59.237 40.000 0.00 0.00 0.00 4.16
445 446 5.048713 CACAGTTTCTCTTTATTGGACCACC 60.049 44.000 0.00 0.00 0.00 4.61
446 447 4.459337 CAGTTTCTCTTTATTGGACCACCC 59.541 45.833 0.00 0.00 34.81 4.61
447 448 3.732048 TTCTCTTTATTGGACCACCCC 57.268 47.619 0.00 0.00 34.81 4.95
448 449 2.929301 TCTCTTTATTGGACCACCCCT 58.071 47.619 0.00 0.00 34.81 4.79
449 450 2.844348 TCTCTTTATTGGACCACCCCTC 59.156 50.000 0.00 0.00 34.81 4.30
450 451 2.846827 CTCTTTATTGGACCACCCCTCT 59.153 50.000 0.00 0.00 34.81 3.69
451 452 2.576191 TCTTTATTGGACCACCCCTCTG 59.424 50.000 0.00 0.00 34.81 3.35
452 453 2.053747 TTATTGGACCACCCCTCTGT 57.946 50.000 0.00 0.00 34.81 3.41
453 454 1.285280 TATTGGACCACCCCTCTGTG 58.715 55.000 0.00 0.00 35.98 3.66
454 455 0.772124 ATTGGACCACCCCTCTGTGT 60.772 55.000 0.00 0.00 34.35 3.72
455 456 1.705002 TTGGACCACCCCTCTGTGTG 61.705 60.000 0.00 0.00 34.35 3.82
456 457 2.147387 GGACCACCCCTCTGTGTGT 61.147 63.158 0.00 0.00 34.35 3.72
457 458 1.071471 GACCACCCCTCTGTGTGTG 59.929 63.158 0.00 0.00 34.35 3.82
458 459 1.383943 ACCACCCCTCTGTGTGTGA 60.384 57.895 0.00 0.00 34.35 3.58
459 460 1.071471 CCACCCCTCTGTGTGTGAC 59.929 63.158 0.00 0.00 34.35 3.67
460 461 1.695114 CCACCCCTCTGTGTGTGACA 61.695 60.000 0.00 0.00 34.35 3.58
461 462 0.397941 CACCCCTCTGTGTGTGACAT 59.602 55.000 0.00 0.00 32.74 3.06
462 463 0.397941 ACCCCTCTGTGTGTGACATG 59.602 55.000 0.00 0.00 32.74 3.21
463 464 0.321919 CCCCTCTGTGTGTGACATGG 60.322 60.000 0.00 0.00 32.74 3.66
464 465 0.686789 CCCTCTGTGTGTGACATGGA 59.313 55.000 0.00 0.00 32.74 3.41
465 466 1.072173 CCCTCTGTGTGTGACATGGAA 59.928 52.381 0.00 0.00 32.74 3.53
466 467 2.487086 CCCTCTGTGTGTGACATGGAAA 60.487 50.000 0.00 0.00 32.74 3.13
467 468 3.213506 CCTCTGTGTGTGACATGGAAAA 58.786 45.455 0.00 0.00 32.74 2.29
468 469 3.631686 CCTCTGTGTGTGACATGGAAAAA 59.368 43.478 0.00 0.00 32.74 1.94
486 487 2.496899 AAAATGCTCTCCCGTCATGT 57.503 45.000 0.00 0.00 0.00 3.21
487 488 1.742761 AAATGCTCTCCCGTCATGTG 58.257 50.000 0.00 0.00 0.00 3.21
488 489 0.904649 AATGCTCTCCCGTCATGTGA 59.095 50.000 0.00 0.00 0.00 3.58
489 490 0.904649 ATGCTCTCCCGTCATGTGAA 59.095 50.000 0.00 0.00 0.00 3.18
490 491 0.037326 TGCTCTCCCGTCATGTGAAC 60.037 55.000 0.00 0.00 0.00 3.18
491 492 0.741221 GCTCTCCCGTCATGTGAACC 60.741 60.000 0.00 0.00 0.00 3.62
492 493 0.458543 CTCTCCCGTCATGTGAACCG 60.459 60.000 0.00 0.00 0.00 4.44
493 494 2.047655 TCCCGTCATGTGAACCGC 60.048 61.111 0.00 0.00 0.00 5.68
494 495 2.358125 CCCGTCATGTGAACCGCA 60.358 61.111 0.00 0.00 0.00 5.69
495 496 1.745115 CCCGTCATGTGAACCGCAT 60.745 57.895 0.00 0.00 34.71 4.73
499 500 3.276109 CATGTGAACCGCATGGCA 58.724 55.556 11.45 0.00 45.27 4.92
500 501 1.138036 CATGTGAACCGCATGGCAG 59.862 57.895 11.45 0.00 45.27 4.85
501 502 1.002257 ATGTGAACCGCATGGCAGA 60.002 52.632 0.00 0.00 39.70 4.26
502 503 0.394762 ATGTGAACCGCATGGCAGAT 60.395 50.000 0.00 0.00 39.70 2.90
503 504 1.026182 TGTGAACCGCATGGCAGATC 61.026 55.000 0.00 0.00 39.70 2.75
504 505 1.815003 TGAACCGCATGGCAGATCG 60.815 57.895 0.00 0.00 39.70 3.69
505 506 1.521457 GAACCGCATGGCAGATCGA 60.521 57.895 7.27 0.00 39.70 3.59
506 507 0.882042 GAACCGCATGGCAGATCGAT 60.882 55.000 0.00 0.00 39.70 3.59
507 508 0.882042 AACCGCATGGCAGATCGATC 60.882 55.000 17.91 17.91 39.70 3.69
508 509 1.301165 CCGCATGGCAGATCGATCA 60.301 57.895 26.47 7.58 0.00 2.92
509 510 1.563435 CCGCATGGCAGATCGATCAC 61.563 60.000 26.47 17.46 0.00 3.06
510 511 0.877213 CGCATGGCAGATCGATCACA 60.877 55.000 26.47 20.80 0.00 3.58
511 512 0.866427 GCATGGCAGATCGATCACAG 59.134 55.000 26.47 16.38 0.00 3.66
512 513 0.866427 CATGGCAGATCGATCACAGC 59.134 55.000 26.47 23.81 0.00 4.40
513 514 0.250209 ATGGCAGATCGATCACAGCC 60.250 55.000 32.40 32.40 39.98 4.85
514 515 1.332889 TGGCAGATCGATCACAGCCT 61.333 55.000 35.32 14.81 40.13 4.58
515 516 0.599728 GGCAGATCGATCACAGCCTC 60.600 60.000 32.07 17.48 38.01 4.70
516 517 0.938637 GCAGATCGATCACAGCCTCG 60.939 60.000 26.47 6.07 36.25 4.63
517 518 0.665298 CAGATCGATCACAGCCTCGA 59.335 55.000 26.47 0.00 46.71 4.04
518 519 1.066152 CAGATCGATCACAGCCTCGAA 59.934 52.381 26.47 0.00 45.90 3.71
519 520 1.066303 AGATCGATCACAGCCTCGAAC 59.934 52.381 26.47 0.00 45.90 3.95
520 521 0.817654 ATCGATCACAGCCTCGAACA 59.182 50.000 0.00 0.00 45.90 3.18
521 522 0.817654 TCGATCACAGCCTCGAACAT 59.182 50.000 0.00 0.00 40.64 2.71
522 523 2.021457 TCGATCACAGCCTCGAACATA 58.979 47.619 0.00 0.00 40.64 2.29
523 524 2.425668 TCGATCACAGCCTCGAACATAA 59.574 45.455 0.00 0.00 40.64 1.90
524 525 2.535984 CGATCACAGCCTCGAACATAAC 59.464 50.000 0.00 0.00 37.05 1.89
525 526 3.735208 CGATCACAGCCTCGAACATAACT 60.735 47.826 0.00 0.00 37.05 2.24
526 527 3.232213 TCACAGCCTCGAACATAACTC 57.768 47.619 0.00 0.00 0.00 3.01
527 528 2.094182 TCACAGCCTCGAACATAACTCC 60.094 50.000 0.00 0.00 0.00 3.85
528 529 2.093973 CACAGCCTCGAACATAACTCCT 60.094 50.000 0.00 0.00 0.00 3.69
529 530 2.567615 ACAGCCTCGAACATAACTCCTT 59.432 45.455 0.00 0.00 0.00 3.36
530 531 2.932614 CAGCCTCGAACATAACTCCTTG 59.067 50.000 0.00 0.00 0.00 3.61
531 532 2.093447 AGCCTCGAACATAACTCCTTGG 60.093 50.000 0.00 0.00 0.00 3.61
532 533 2.354805 GCCTCGAACATAACTCCTTGGT 60.355 50.000 0.00 0.00 0.00 3.67
533 534 3.868754 GCCTCGAACATAACTCCTTGGTT 60.869 47.826 0.00 0.00 0.00 3.67
534 535 3.684788 CCTCGAACATAACTCCTTGGTTG 59.315 47.826 0.00 0.00 0.00 3.77
535 536 3.071479 TCGAACATAACTCCTTGGTTGC 58.929 45.455 0.00 0.00 0.00 4.17
536 537 2.161609 CGAACATAACTCCTTGGTTGCC 59.838 50.000 0.00 0.00 0.00 4.52
537 538 3.421844 GAACATAACTCCTTGGTTGCCT 58.578 45.455 0.00 0.00 0.00 4.75
538 539 2.795329 ACATAACTCCTTGGTTGCCTG 58.205 47.619 0.00 0.00 0.00 4.85
539 540 2.375174 ACATAACTCCTTGGTTGCCTGA 59.625 45.455 0.00 0.00 0.00 3.86
540 541 2.561478 TAACTCCTTGGTTGCCTGAC 57.439 50.000 0.00 0.00 0.00 3.51
541 542 0.846693 AACTCCTTGGTTGCCTGACT 59.153 50.000 0.00 0.00 0.00 3.41
542 543 0.109342 ACTCCTTGGTTGCCTGACTG 59.891 55.000 0.00 0.00 0.00 3.51
543 544 0.607489 CTCCTTGGTTGCCTGACTGG 60.607 60.000 0.00 0.00 39.35 4.00
544 545 1.604593 CCTTGGTTGCCTGACTGGG 60.605 63.158 0.01 0.00 36.00 4.45
545 546 1.455849 CTTGGTTGCCTGACTGGGA 59.544 57.895 0.01 0.00 36.00 4.37
546 547 0.178992 CTTGGTTGCCTGACTGGGAA 60.179 55.000 0.96 0.96 44.14 3.97
550 551 2.791253 TTGCCTGACTGGGAATCCT 58.209 52.632 0.00 0.00 41.39 3.24
551 552 0.329261 TTGCCTGACTGGGAATCCTG 59.671 55.000 0.00 0.00 41.39 3.86
552 553 0.547471 TGCCTGACTGGGAATCCTGA 60.547 55.000 0.00 0.00 36.08 3.86
553 554 0.842635 GCCTGACTGGGAATCCTGAT 59.157 55.000 0.00 0.00 36.08 2.90
554 555 1.202746 GCCTGACTGGGAATCCTGATC 60.203 57.143 0.00 0.00 36.08 2.92
555 556 1.069823 CCTGACTGGGAATCCTGATCG 59.930 57.143 0.00 0.00 36.08 3.69
556 557 2.034878 CTGACTGGGAATCCTGATCGA 58.965 52.381 0.00 0.00 36.08 3.59
557 558 1.757118 TGACTGGGAATCCTGATCGAC 59.243 52.381 0.00 0.00 36.08 4.20
558 559 1.757118 GACTGGGAATCCTGATCGACA 59.243 52.381 0.00 0.00 36.08 4.35
559 560 2.366916 GACTGGGAATCCTGATCGACAT 59.633 50.000 0.00 0.00 36.08 3.06
560 561 3.574396 GACTGGGAATCCTGATCGACATA 59.426 47.826 0.00 0.00 36.08 2.29
561 562 4.163427 ACTGGGAATCCTGATCGACATAT 58.837 43.478 0.00 0.00 36.08 1.78
562 563 5.333581 ACTGGGAATCCTGATCGACATATA 58.666 41.667 0.00 0.00 36.08 0.86
563 564 5.960811 ACTGGGAATCCTGATCGACATATAT 59.039 40.000 0.00 0.00 36.08 0.86
564 565 6.441924 ACTGGGAATCCTGATCGACATATATT 59.558 38.462 0.00 0.00 36.08 1.28
565 566 7.038017 ACTGGGAATCCTGATCGACATATATTT 60.038 37.037 0.00 0.00 36.08 1.40
566 567 7.105588 TGGGAATCCTGATCGACATATATTTG 58.894 38.462 0.00 0.00 0.00 2.32
567 568 6.540189 GGGAATCCTGATCGACATATATTTGG 59.460 42.308 0.00 0.00 0.00 3.28
568 569 6.037610 GGAATCCTGATCGACATATATTTGGC 59.962 42.308 0.00 0.00 0.00 4.52
569 570 5.482163 TCCTGATCGACATATATTTGGCA 57.518 39.130 0.00 0.00 0.00 4.92
740 741 1.151899 TTACAGGTGGGACCAGGCT 60.152 57.895 0.00 0.00 41.95 4.58
863 864 2.347490 GACAGCGGTGGTGACCAT 59.653 61.111 20.20 0.00 43.33 3.55
1779 1802 0.539438 TGGGCCAAATTCAGAGCGTT 60.539 50.000 2.13 0.00 0.00 4.84
1792 1815 2.956987 GCGTTGAGCCAAGTGCAT 59.043 55.556 0.00 0.00 44.83 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.270027 TGTTGTGAGCCTATTGATTCCG 58.730 45.455 0.00 0.00 0.00 4.30
1 2 4.437390 CGTTGTTGTGAGCCTATTGATTCC 60.437 45.833 0.00 0.00 0.00 3.01
22 23 5.760484 TGTCCCTTTAACCCTATTAACGT 57.240 39.130 0.00 0.00 0.00 3.99
102 103 6.824196 TGGTTGTGTGTAAACTAAGTTGATCA 59.176 34.615 0.00 0.00 0.00 2.92
103 104 7.254227 TGGTTGTGTGTAAACTAAGTTGATC 57.746 36.000 0.00 0.00 0.00 2.92
104 105 7.633193 TTGGTTGTGTGTAAACTAAGTTGAT 57.367 32.000 0.00 0.00 0.00 2.57
105 106 7.079182 CTTGGTTGTGTGTAAACTAAGTTGA 57.921 36.000 4.74 0.00 39.75 3.18
109 110 8.024285 TGAAAACTTGGTTGTGTGTAAACTAAG 58.976 33.333 9.87 9.87 46.02 2.18
110 111 7.883217 TGAAAACTTGGTTGTGTGTAAACTAA 58.117 30.769 0.00 0.00 0.00 2.24
111 112 7.450124 TGAAAACTTGGTTGTGTGTAAACTA 57.550 32.000 0.00 0.00 0.00 2.24
112 113 6.334102 TGAAAACTTGGTTGTGTGTAAACT 57.666 33.333 0.00 0.00 0.00 2.66
113 114 7.462200 CGATTGAAAACTTGGTTGTGTGTAAAC 60.462 37.037 0.00 0.00 0.00 2.01
114 115 6.528423 CGATTGAAAACTTGGTTGTGTGTAAA 59.472 34.615 0.00 0.00 0.00 2.01
115 116 6.030849 CGATTGAAAACTTGGTTGTGTGTAA 58.969 36.000 0.00 0.00 0.00 2.41
116 117 5.354513 TCGATTGAAAACTTGGTTGTGTGTA 59.645 36.000 0.00 0.00 0.00 2.90
117 118 4.156922 TCGATTGAAAACTTGGTTGTGTGT 59.843 37.500 0.00 0.00 0.00 3.72
118 119 4.667262 TCGATTGAAAACTTGGTTGTGTG 58.333 39.130 0.00 0.00 0.00 3.82
119 120 4.974368 TCGATTGAAAACTTGGTTGTGT 57.026 36.364 0.00 0.00 0.00 3.72
120 121 6.639212 CAATTCGATTGAAAACTTGGTTGTG 58.361 36.000 0.00 0.00 42.83 3.33
121 122 5.234116 GCAATTCGATTGAAAACTTGGTTGT 59.766 36.000 0.00 0.00 42.83 3.32
122 123 5.333263 GGCAATTCGATTGAAAACTTGGTTG 60.333 40.000 0.00 0.00 42.83 3.77
123 124 4.749598 GGCAATTCGATTGAAAACTTGGTT 59.250 37.500 0.00 0.00 42.83 3.67
124 125 4.202202 TGGCAATTCGATTGAAAACTTGGT 60.202 37.500 0.00 0.00 42.83 3.67
125 126 4.305769 TGGCAATTCGATTGAAAACTTGG 58.694 39.130 0.00 0.00 42.83 3.61
126 127 5.634439 TCATGGCAATTCGATTGAAAACTTG 59.366 36.000 0.00 1.58 42.83 3.16
127 128 5.782047 TCATGGCAATTCGATTGAAAACTT 58.218 33.333 0.00 0.00 42.83 2.66
128 129 5.047802 ACTCATGGCAATTCGATTGAAAACT 60.048 36.000 0.00 0.00 42.83 2.66
129 130 5.061311 CACTCATGGCAATTCGATTGAAAAC 59.939 40.000 0.00 0.00 42.83 2.43
130 131 5.162794 CACTCATGGCAATTCGATTGAAAA 58.837 37.500 0.00 0.00 42.83 2.29
131 132 4.218200 ACACTCATGGCAATTCGATTGAAA 59.782 37.500 0.00 0.00 42.83 2.69
132 133 3.758023 ACACTCATGGCAATTCGATTGAA 59.242 39.130 10.52 0.00 42.83 2.69
133 134 3.346315 ACACTCATGGCAATTCGATTGA 58.654 40.909 10.52 0.00 42.83 2.57
134 135 3.770263 ACACTCATGGCAATTCGATTG 57.230 42.857 0.00 0.00 43.06 2.67
135 136 4.517285 ACTACACTCATGGCAATTCGATT 58.483 39.130 0.00 0.00 0.00 3.34
136 137 4.142609 ACTACACTCATGGCAATTCGAT 57.857 40.909 0.00 0.00 0.00 3.59
137 138 3.610040 ACTACACTCATGGCAATTCGA 57.390 42.857 0.00 0.00 0.00 3.71
138 139 5.991328 ATTACTACACTCATGGCAATTCG 57.009 39.130 0.00 0.00 0.00 3.34
139 140 8.243426 TCAAAATTACTACACTCATGGCAATTC 58.757 33.333 0.00 0.00 0.00 2.17
140 141 8.121305 TCAAAATTACTACACTCATGGCAATT 57.879 30.769 0.00 0.00 0.00 2.32
141 142 7.701539 TCAAAATTACTACACTCATGGCAAT 57.298 32.000 0.00 0.00 0.00 3.56
142 143 7.230510 ACTTCAAAATTACTACACTCATGGCAA 59.769 33.333 0.00 0.00 0.00 4.52
143 144 6.714810 ACTTCAAAATTACTACACTCATGGCA 59.285 34.615 0.00 0.00 0.00 4.92
144 145 7.094805 TGACTTCAAAATTACTACACTCATGGC 60.095 37.037 0.00 0.00 0.00 4.40
145 146 8.230486 GTGACTTCAAAATTACTACACTCATGG 58.770 37.037 0.00 0.00 0.00 3.66
146 147 8.993121 AGTGACTTCAAAATTACTACACTCATG 58.007 33.333 0.00 0.00 31.87 3.07
147 148 8.993121 CAGTGACTTCAAAATTACTACACTCAT 58.007 33.333 0.00 0.00 34.57 2.90
148 149 8.201464 TCAGTGACTTCAAAATTACTACACTCA 58.799 33.333 0.00 0.00 34.57 3.41
149 150 8.589335 TCAGTGACTTCAAAATTACTACACTC 57.411 34.615 0.00 0.00 34.57 3.51
177 178 9.503369 AGTGGTAAGACCTTATTCCTAGTTAAT 57.497 33.333 0.00 0.00 39.58 1.40
178 179 8.906238 AGTGGTAAGACCTTATTCCTAGTTAA 57.094 34.615 0.00 0.00 39.58 2.01
179 180 8.755977 CAAGTGGTAAGACCTTATTCCTAGTTA 58.244 37.037 0.00 0.00 39.58 2.24
180 181 7.311109 CCAAGTGGTAAGACCTTATTCCTAGTT 60.311 40.741 0.00 0.00 39.58 2.24
181 182 6.156429 CCAAGTGGTAAGACCTTATTCCTAGT 59.844 42.308 0.00 0.00 39.58 2.57
182 183 6.583562 CCAAGTGGTAAGACCTTATTCCTAG 58.416 44.000 0.00 0.00 39.58 3.02
183 184 5.104652 GCCAAGTGGTAAGACCTTATTCCTA 60.105 44.000 0.00 0.00 39.58 2.94
184 185 4.324331 GCCAAGTGGTAAGACCTTATTCCT 60.324 45.833 0.00 0.00 39.58 3.36
185 186 3.945921 GCCAAGTGGTAAGACCTTATTCC 59.054 47.826 0.00 0.00 39.58 3.01
186 187 4.844884 AGCCAAGTGGTAAGACCTTATTC 58.155 43.478 0.00 0.00 39.58 1.75
187 188 4.929146 AGCCAAGTGGTAAGACCTTATT 57.071 40.909 0.00 0.00 39.58 1.40
188 189 5.030820 ACTAGCCAAGTGGTAAGACCTTAT 58.969 41.667 0.00 0.00 39.58 1.73
189 190 4.422984 ACTAGCCAAGTGGTAAGACCTTA 58.577 43.478 0.00 0.00 39.58 2.69
190 191 3.248888 ACTAGCCAAGTGGTAAGACCTT 58.751 45.455 0.00 0.00 39.58 3.50
191 192 2.903926 ACTAGCCAAGTGGTAAGACCT 58.096 47.619 0.00 0.00 39.58 3.85
192 193 3.428589 CGTACTAGCCAAGTGGTAAGACC 60.429 52.174 0.00 0.00 39.39 3.85
193 194 3.192212 ACGTACTAGCCAAGTGGTAAGAC 59.808 47.826 0.00 0.00 39.39 3.01
194 195 3.424703 ACGTACTAGCCAAGTGGTAAGA 58.575 45.455 0.00 0.00 39.39 2.10
195 196 3.863142 ACGTACTAGCCAAGTGGTAAG 57.137 47.619 0.00 0.00 39.39 2.34
196 197 4.156556 CAGTACGTACTAGCCAAGTGGTAA 59.843 45.833 26.95 0.00 39.39 2.85
197 198 3.691118 CAGTACGTACTAGCCAAGTGGTA 59.309 47.826 26.95 0.47 39.39 3.25
198 199 2.490903 CAGTACGTACTAGCCAAGTGGT 59.509 50.000 26.95 0.00 39.39 4.16
199 200 2.490903 ACAGTACGTACTAGCCAAGTGG 59.509 50.000 26.95 14.00 39.39 4.00
200 201 3.844577 ACAGTACGTACTAGCCAAGTG 57.155 47.619 26.95 15.45 39.39 3.16
201 202 4.861102 AAACAGTACGTACTAGCCAAGT 57.139 40.909 26.95 16.68 42.62 3.16
202 203 7.031372 TGATAAAACAGTACGTACTAGCCAAG 58.969 38.462 26.95 16.05 34.13 3.61
203 204 6.923012 TGATAAAACAGTACGTACTAGCCAA 58.077 36.000 26.95 13.58 34.13 4.52
204 205 6.513806 TGATAAAACAGTACGTACTAGCCA 57.486 37.500 26.95 14.63 34.13 4.75
205 206 5.458126 GCTGATAAAACAGTACGTACTAGCC 59.542 44.000 26.95 12.54 39.73 3.93
206 207 6.264088 AGCTGATAAAACAGTACGTACTAGC 58.736 40.000 26.95 25.78 39.73 3.42
207 208 8.684973 AAAGCTGATAAAACAGTACGTACTAG 57.315 34.615 26.95 21.60 39.73 2.57
208 209 7.756722 GGAAAGCTGATAAAACAGTACGTACTA 59.243 37.037 26.95 12.50 39.73 1.82
209 210 6.589139 GGAAAGCTGATAAAACAGTACGTACT 59.411 38.462 22.45 22.45 39.73 2.73
210 211 6.453396 CGGAAAGCTGATAAAACAGTACGTAC 60.453 42.308 18.10 18.10 39.73 3.67
211 212 5.574055 CGGAAAGCTGATAAAACAGTACGTA 59.426 40.000 0.00 0.00 39.73 3.57
212 213 4.387862 CGGAAAGCTGATAAAACAGTACGT 59.612 41.667 0.00 0.00 39.73 3.57
213 214 4.624024 TCGGAAAGCTGATAAAACAGTACG 59.376 41.667 0.00 0.00 39.73 3.67
214 215 6.663944 ATCGGAAAGCTGATAAAACAGTAC 57.336 37.500 0.00 0.00 38.35 2.73
215 216 7.606456 AGAAATCGGAAAGCTGATAAAACAGTA 59.394 33.333 0.00 0.00 39.20 2.74
216 217 6.431234 AGAAATCGGAAAGCTGATAAAACAGT 59.569 34.615 0.00 0.00 39.20 3.55
217 218 6.846350 AGAAATCGGAAAGCTGATAAAACAG 58.154 36.000 0.00 0.00 39.20 3.16
218 219 6.817765 AGAAATCGGAAAGCTGATAAAACA 57.182 33.333 0.00 0.00 39.20 2.83
219 220 9.620660 TTTTAGAAATCGGAAAGCTGATAAAAC 57.379 29.630 0.00 0.00 39.20 2.43
224 225 9.178758 ACTATTTTTAGAAATCGGAAAGCTGAT 57.821 29.630 0.00 0.00 41.91 2.90
225 226 8.561738 ACTATTTTTAGAAATCGGAAAGCTGA 57.438 30.769 0.00 0.00 36.82 4.26
226 227 9.704098 GTACTATTTTTAGAAATCGGAAAGCTG 57.296 33.333 0.00 0.00 36.82 4.24
227 228 9.668497 AGTACTATTTTTAGAAATCGGAAAGCT 57.332 29.630 0.00 0.00 36.82 3.74
245 246 9.866798 CGGAAACCTTAGTCTTTTAGTACTATT 57.133 33.333 2.79 0.00 0.00 1.73
246 247 9.029368 ACGGAAACCTTAGTCTTTTAGTACTAT 57.971 33.333 2.79 0.00 0.00 2.12
247 248 8.409358 ACGGAAACCTTAGTCTTTTAGTACTA 57.591 34.615 0.00 0.00 0.00 1.82
248 249 7.232330 AGACGGAAACCTTAGTCTTTTAGTACT 59.768 37.037 0.00 0.00 40.64 2.73
249 250 7.374272 AGACGGAAACCTTAGTCTTTTAGTAC 58.626 38.462 0.00 0.00 40.64 2.73
250 251 7.530426 AGACGGAAACCTTAGTCTTTTAGTA 57.470 36.000 0.00 0.00 40.64 1.82
251 252 6.416631 AGACGGAAACCTTAGTCTTTTAGT 57.583 37.500 0.00 0.00 40.64 2.24
257 258 3.181458 TGCAAAGACGGAAACCTTAGTCT 60.181 43.478 0.00 0.00 44.81 3.24
258 259 3.135994 TGCAAAGACGGAAACCTTAGTC 58.864 45.455 0.00 0.00 0.00 2.59
259 260 3.202829 TGCAAAGACGGAAACCTTAGT 57.797 42.857 0.00 0.00 0.00 2.24
260 261 5.817816 AGATATGCAAAGACGGAAACCTTAG 59.182 40.000 0.00 0.00 0.00 2.18
261 262 5.741011 AGATATGCAAAGACGGAAACCTTA 58.259 37.500 0.00 0.00 0.00 2.69
262 263 4.589908 AGATATGCAAAGACGGAAACCTT 58.410 39.130 0.00 0.00 0.00 3.50
263 264 4.222124 AGATATGCAAAGACGGAAACCT 57.778 40.909 0.00 0.00 0.00 3.50
264 265 4.024809 GCTAGATATGCAAAGACGGAAACC 60.025 45.833 0.00 0.00 0.00 3.27
265 266 4.024809 GGCTAGATATGCAAAGACGGAAAC 60.025 45.833 0.00 0.00 0.00 2.78
266 267 4.127171 GGCTAGATATGCAAAGACGGAAA 58.873 43.478 0.00 0.00 0.00 3.13
267 268 3.728845 GGCTAGATATGCAAAGACGGAA 58.271 45.455 0.00 0.00 0.00 4.30
268 269 2.288213 CGGCTAGATATGCAAAGACGGA 60.288 50.000 0.00 0.00 36.83 4.69
269 270 2.061773 CGGCTAGATATGCAAAGACGG 58.938 52.381 0.00 0.00 36.83 4.79
270 271 2.983136 CTCGGCTAGATATGCAAAGACG 59.017 50.000 0.00 0.00 41.86 4.18
271 272 4.244425 TCTCGGCTAGATATGCAAAGAC 57.756 45.455 0.00 0.00 0.00 3.01
272 273 5.474578 AATCTCGGCTAGATATGCAAAGA 57.525 39.130 1.53 0.00 44.56 2.52
273 274 6.348050 GGAAAATCTCGGCTAGATATGCAAAG 60.348 42.308 1.53 0.00 44.56 2.77
274 275 5.470098 GGAAAATCTCGGCTAGATATGCAAA 59.530 40.000 1.53 0.00 44.56 3.68
275 276 4.997395 GGAAAATCTCGGCTAGATATGCAA 59.003 41.667 1.53 0.00 44.56 4.08
276 277 4.284490 AGGAAAATCTCGGCTAGATATGCA 59.716 41.667 1.53 0.00 44.56 3.96
277 278 4.629200 CAGGAAAATCTCGGCTAGATATGC 59.371 45.833 1.53 0.78 44.56 3.14
278 279 6.030548 TCAGGAAAATCTCGGCTAGATATG 57.969 41.667 1.53 0.00 44.56 1.78
279 280 6.672266 TTCAGGAAAATCTCGGCTAGATAT 57.328 37.500 1.53 0.00 44.56 1.63
280 281 6.479972 TTTCAGGAAAATCTCGGCTAGATA 57.520 37.500 1.53 0.00 44.56 1.98
282 283 4.819105 TTTCAGGAAAATCTCGGCTAGA 57.181 40.909 0.00 0.00 39.02 2.43
283 284 4.201724 CGTTTTCAGGAAAATCTCGGCTAG 60.202 45.833 10.10 0.00 41.64 3.42
284 285 3.682858 CGTTTTCAGGAAAATCTCGGCTA 59.317 43.478 10.10 0.00 41.64 3.93
285 286 2.484264 CGTTTTCAGGAAAATCTCGGCT 59.516 45.455 10.10 0.00 41.64 5.52
286 287 2.225727 ACGTTTTCAGGAAAATCTCGGC 59.774 45.455 10.10 0.00 41.64 5.54
287 288 3.120304 GGACGTTTTCAGGAAAATCTCGG 60.120 47.826 10.10 2.16 41.64 4.63
288 289 3.746492 AGGACGTTTTCAGGAAAATCTCG 59.254 43.478 10.10 11.10 41.64 4.04
289 290 5.238650 TCAAGGACGTTTTCAGGAAAATCTC 59.761 40.000 10.10 7.77 41.64 2.75
290 291 5.130350 TCAAGGACGTTTTCAGGAAAATCT 58.870 37.500 10.10 4.38 41.64 2.40
291 292 5.432885 TCAAGGACGTTTTCAGGAAAATC 57.567 39.130 10.10 5.31 41.64 2.17
292 293 5.845391 TTCAAGGACGTTTTCAGGAAAAT 57.155 34.783 10.10 0.00 41.64 1.82
293 294 5.646577 TTTCAAGGACGTTTTCAGGAAAA 57.353 34.783 3.19 3.19 37.90 2.29
294 295 5.184287 ACTTTTCAAGGACGTTTTCAGGAAA 59.816 36.000 0.00 0.00 0.00 3.13
295 296 4.703093 ACTTTTCAAGGACGTTTTCAGGAA 59.297 37.500 0.00 0.00 0.00 3.36
296 297 4.095782 CACTTTTCAAGGACGTTTTCAGGA 59.904 41.667 0.00 0.00 0.00 3.86
297 298 4.142469 ACACTTTTCAAGGACGTTTTCAGG 60.142 41.667 0.00 0.00 0.00 3.86
298 299 4.981794 ACACTTTTCAAGGACGTTTTCAG 58.018 39.130 0.00 0.00 0.00 3.02
299 300 5.448089 GCTACACTTTTCAAGGACGTTTTCA 60.448 40.000 0.00 0.00 0.00 2.69
300 301 4.968181 GCTACACTTTTCAAGGACGTTTTC 59.032 41.667 0.00 0.00 0.00 2.29
301 302 4.638865 AGCTACACTTTTCAAGGACGTTTT 59.361 37.500 0.00 0.00 0.00 2.43
302 303 4.196971 AGCTACACTTTTCAAGGACGTTT 58.803 39.130 0.00 0.00 0.00 3.60
303 304 3.805207 AGCTACACTTTTCAAGGACGTT 58.195 40.909 0.00 0.00 0.00 3.99
304 305 3.181469 TGAGCTACACTTTTCAAGGACGT 60.181 43.478 0.00 0.00 0.00 4.34
305 306 3.390135 TGAGCTACACTTTTCAAGGACG 58.610 45.455 0.00 0.00 0.00 4.79
306 307 3.748568 CCTGAGCTACACTTTTCAAGGAC 59.251 47.826 0.00 0.00 0.00 3.85
307 308 3.391296 ACCTGAGCTACACTTTTCAAGGA 59.609 43.478 0.00 0.00 0.00 3.36
308 309 3.744660 ACCTGAGCTACACTTTTCAAGG 58.255 45.455 0.00 0.00 0.00 3.61
309 310 4.816385 TGAACCTGAGCTACACTTTTCAAG 59.184 41.667 0.00 0.00 0.00 3.02
310 311 4.776349 TGAACCTGAGCTACACTTTTCAA 58.224 39.130 0.00 0.00 0.00 2.69
311 312 4.415881 TGAACCTGAGCTACACTTTTCA 57.584 40.909 0.00 0.00 0.00 2.69
312 313 7.617041 AATATGAACCTGAGCTACACTTTTC 57.383 36.000 0.00 0.00 0.00 2.29
313 314 9.167311 CTAAATATGAACCTGAGCTACACTTTT 57.833 33.333 0.00 0.00 0.00 2.27
314 315 8.540388 TCTAAATATGAACCTGAGCTACACTTT 58.460 33.333 0.00 0.00 0.00 2.66
315 316 8.079211 TCTAAATATGAACCTGAGCTACACTT 57.921 34.615 0.00 0.00 0.00 3.16
316 317 7.661536 TCTAAATATGAACCTGAGCTACACT 57.338 36.000 0.00 0.00 0.00 3.55
317 318 8.718102 TTTCTAAATATGAACCTGAGCTACAC 57.282 34.615 0.00 0.00 0.00 2.90
321 322 9.553064 CACTATTTCTAAATATGAACCTGAGCT 57.447 33.333 0.00 0.00 31.03 4.09
322 323 9.547753 TCACTATTTCTAAATATGAACCTGAGC 57.452 33.333 0.00 0.00 31.03 4.26
326 327 9.046296 CGCTTCACTATTTCTAAATATGAACCT 57.954 33.333 11.81 0.00 32.11 3.50
327 328 7.798982 GCGCTTCACTATTTCTAAATATGAACC 59.201 37.037 0.00 8.14 32.11 3.62
328 329 7.527516 CGCGCTTCACTATTTCTAAATATGAAC 59.472 37.037 5.56 9.76 32.11 3.18
329 330 7.223971 ACGCGCTTCACTATTTCTAAATATGAA 59.776 33.333 5.73 13.52 33.13 2.57
330 331 6.700081 ACGCGCTTCACTATTTCTAAATATGA 59.300 34.615 5.73 1.35 31.03 2.15
331 332 6.877855 ACGCGCTTCACTATTTCTAAATATG 58.122 36.000 5.73 0.00 31.03 1.78
332 333 6.145696 GGACGCGCTTCACTATTTCTAAATAT 59.854 38.462 16.33 0.00 31.03 1.28
333 334 5.461078 GGACGCGCTTCACTATTTCTAAATA 59.539 40.000 16.33 0.00 0.00 1.40
334 335 4.270325 GGACGCGCTTCACTATTTCTAAAT 59.730 41.667 16.33 0.00 0.00 1.40
335 336 3.615496 GGACGCGCTTCACTATTTCTAAA 59.385 43.478 16.33 0.00 0.00 1.85
336 337 3.119245 AGGACGCGCTTCACTATTTCTAA 60.119 43.478 16.33 0.00 0.00 2.10
337 338 2.426024 AGGACGCGCTTCACTATTTCTA 59.574 45.455 16.33 0.00 0.00 2.10
338 339 1.204941 AGGACGCGCTTCACTATTTCT 59.795 47.619 16.33 0.00 0.00 2.52
339 340 1.641577 AGGACGCGCTTCACTATTTC 58.358 50.000 16.33 0.00 0.00 2.17
340 341 2.094762 AAGGACGCGCTTCACTATTT 57.905 45.000 16.33 0.00 0.00 1.40
341 342 1.732259 CAAAGGACGCGCTTCACTATT 59.268 47.619 16.33 2.00 0.00 1.73
342 343 1.337823 ACAAAGGACGCGCTTCACTAT 60.338 47.619 16.33 0.00 0.00 2.12
343 344 0.032952 ACAAAGGACGCGCTTCACTA 59.967 50.000 16.33 0.00 0.00 2.74
344 345 1.222115 GACAAAGGACGCGCTTCACT 61.222 55.000 16.33 7.57 0.00 3.41
345 346 1.204312 GACAAAGGACGCGCTTCAC 59.796 57.895 16.33 5.32 0.00 3.18
346 347 2.307309 CGACAAAGGACGCGCTTCA 61.307 57.895 16.33 0.00 0.00 3.02
347 348 2.470286 CGACAAAGGACGCGCTTC 59.530 61.111 5.73 5.32 0.00 3.86
348 349 3.712881 GCGACAAAGGACGCGCTT 61.713 61.111 5.73 0.00 46.80 4.68
353 354 1.337817 CGACTGAGCGACAAAGGACG 61.338 60.000 0.00 0.00 35.31 4.79
354 355 1.618640 GCGACTGAGCGACAAAGGAC 61.619 60.000 0.72 0.00 0.00 3.85
355 356 1.372997 GCGACTGAGCGACAAAGGA 60.373 57.895 0.72 0.00 0.00 3.36
356 357 1.016130 ATGCGACTGAGCGACAAAGG 61.016 55.000 0.72 0.00 40.67 3.11
357 358 1.629013 TATGCGACTGAGCGACAAAG 58.371 50.000 0.72 0.00 40.67 2.77
358 359 2.073117 TTATGCGACTGAGCGACAAA 57.927 45.000 0.72 0.00 40.67 2.83
359 360 2.293677 ATTATGCGACTGAGCGACAA 57.706 45.000 0.72 0.00 40.67 3.18
360 361 2.193447 GAATTATGCGACTGAGCGACA 58.807 47.619 0.72 0.00 40.67 4.35
361 362 2.193447 TGAATTATGCGACTGAGCGAC 58.807 47.619 0.72 0.00 40.67 5.19
362 363 2.577449 TGAATTATGCGACTGAGCGA 57.423 45.000 0.72 0.00 40.67 4.93
363 364 2.595188 CGTTGAATTATGCGACTGAGCG 60.595 50.000 0.00 0.00 40.67 5.03
364 365 2.603110 TCGTTGAATTATGCGACTGAGC 59.397 45.455 0.00 0.00 37.71 4.26
365 366 4.170125 GTCGTTGAATTATGCGACTGAG 57.830 45.455 16.04 0.00 46.74 3.35
370 371 1.663643 GCTGGTCGTTGAATTATGCGA 59.336 47.619 0.00 0.00 0.00 5.10
371 372 1.665679 AGCTGGTCGTTGAATTATGCG 59.334 47.619 0.00 0.00 0.00 4.73
372 373 2.939103 AGAGCTGGTCGTTGAATTATGC 59.061 45.455 0.00 0.00 0.00 3.14
373 374 6.662414 TTAAGAGCTGGTCGTTGAATTATG 57.338 37.500 0.00 0.00 0.00 1.90
374 375 7.047891 TGATTAAGAGCTGGTCGTTGAATTAT 58.952 34.615 0.00 0.00 0.00 1.28
375 376 6.403049 TGATTAAGAGCTGGTCGTTGAATTA 58.597 36.000 0.00 0.00 0.00 1.40
376 377 5.245531 TGATTAAGAGCTGGTCGTTGAATT 58.754 37.500 0.00 0.00 0.00 2.17
377 378 4.832248 TGATTAAGAGCTGGTCGTTGAAT 58.168 39.130 0.00 0.00 0.00 2.57
378 379 4.265904 TGATTAAGAGCTGGTCGTTGAA 57.734 40.909 0.00 0.00 0.00 2.69
379 380 3.953712 TGATTAAGAGCTGGTCGTTGA 57.046 42.857 0.00 0.00 0.00 3.18
380 381 5.551760 ATTTGATTAAGAGCTGGTCGTTG 57.448 39.130 0.00 0.00 0.00 4.10
381 382 5.619981 GCAATTTGATTAAGAGCTGGTCGTT 60.620 40.000 0.00 0.00 0.00 3.85
382 383 4.142600 GCAATTTGATTAAGAGCTGGTCGT 60.143 41.667 0.00 0.49 0.00 4.34
383 384 4.346129 GCAATTTGATTAAGAGCTGGTCG 58.654 43.478 0.00 0.00 0.00 4.79
384 385 4.158394 TGGCAATTTGATTAAGAGCTGGTC 59.842 41.667 0.00 0.00 0.00 4.02
385 386 4.088634 TGGCAATTTGATTAAGAGCTGGT 58.911 39.130 0.00 0.00 0.00 4.00
386 387 4.724074 TGGCAATTTGATTAAGAGCTGG 57.276 40.909 0.00 0.00 0.00 4.85
387 388 6.334989 TCAATGGCAATTTGATTAAGAGCTG 58.665 36.000 0.00 0.00 0.00 4.24
388 389 6.534475 TCAATGGCAATTTGATTAAGAGCT 57.466 33.333 0.00 0.00 0.00 4.09
389 390 7.332678 ACTTTCAATGGCAATTTGATTAAGAGC 59.667 33.333 16.47 0.00 33.37 4.09
390 391 8.767478 ACTTTCAATGGCAATTTGATTAAGAG 57.233 30.769 16.47 8.50 33.37 2.85
393 394 9.770097 TGTTACTTTCAATGGCAATTTGATTAA 57.230 25.926 4.49 1.72 33.37 1.40
394 395 9.941325 ATGTTACTTTCAATGGCAATTTGATTA 57.059 25.926 4.49 0.00 33.37 1.75
395 396 8.851541 ATGTTACTTTCAATGGCAATTTGATT 57.148 26.923 4.49 0.00 33.37 2.57
396 397 8.095792 TGATGTTACTTTCAATGGCAATTTGAT 58.904 29.630 4.49 0.00 33.37 2.57
397 398 7.384660 GTGATGTTACTTTCAATGGCAATTTGA 59.615 33.333 0.00 0.00 0.00 2.69
398 399 7.171167 TGTGATGTTACTTTCAATGGCAATTTG 59.829 33.333 0.00 0.00 0.00 2.32
399 400 7.215789 TGTGATGTTACTTTCAATGGCAATTT 58.784 30.769 0.00 0.00 0.00 1.82
400 401 6.757237 TGTGATGTTACTTTCAATGGCAATT 58.243 32.000 0.00 0.00 0.00 2.32
401 402 6.015180 ACTGTGATGTTACTTTCAATGGCAAT 60.015 34.615 0.00 0.00 0.00 3.56
402 403 5.301551 ACTGTGATGTTACTTTCAATGGCAA 59.698 36.000 0.00 0.00 0.00 4.52
403 404 4.826733 ACTGTGATGTTACTTTCAATGGCA 59.173 37.500 0.00 0.00 0.00 4.92
404 405 5.376854 ACTGTGATGTTACTTTCAATGGC 57.623 39.130 0.00 0.00 0.00 4.40
405 406 7.651808 AGAAACTGTGATGTTACTTTCAATGG 58.348 34.615 0.00 0.00 0.00 3.16
406 407 8.562892 AGAGAAACTGTGATGTTACTTTCAATG 58.437 33.333 0.00 0.00 0.00 2.82
407 408 8.682936 AGAGAAACTGTGATGTTACTTTCAAT 57.317 30.769 0.00 0.00 0.00 2.57
408 409 8.506168 AAGAGAAACTGTGATGTTACTTTCAA 57.494 30.769 0.00 0.00 0.00 2.69
409 410 8.506168 AAAGAGAAACTGTGATGTTACTTTCA 57.494 30.769 0.00 0.00 30.53 2.69
413 414 9.003658 CCAATAAAGAGAAACTGTGATGTTACT 57.996 33.333 0.00 0.00 0.00 2.24
414 415 8.999431 TCCAATAAAGAGAAACTGTGATGTTAC 58.001 33.333 0.00 0.00 0.00 2.50
415 416 8.999431 GTCCAATAAAGAGAAACTGTGATGTTA 58.001 33.333 0.00 0.00 0.00 2.41
416 417 7.040409 GGTCCAATAAAGAGAAACTGTGATGTT 60.040 37.037 0.00 0.00 0.00 2.71
417 418 6.431234 GGTCCAATAAAGAGAAACTGTGATGT 59.569 38.462 0.00 0.00 0.00 3.06
418 419 6.430925 TGGTCCAATAAAGAGAAACTGTGATG 59.569 38.462 0.00 0.00 0.00 3.07
419 420 6.431234 GTGGTCCAATAAAGAGAAACTGTGAT 59.569 38.462 0.00 0.00 0.00 3.06
420 421 5.763204 GTGGTCCAATAAAGAGAAACTGTGA 59.237 40.000 0.00 0.00 0.00 3.58
421 422 5.048713 GGTGGTCCAATAAAGAGAAACTGTG 60.049 44.000 0.00 0.00 0.00 3.66
422 423 5.070685 GGTGGTCCAATAAAGAGAAACTGT 58.929 41.667 0.00 0.00 0.00 3.55
423 424 4.459337 GGGTGGTCCAATAAAGAGAAACTG 59.541 45.833 0.00 0.00 35.00 3.16
424 425 4.508584 GGGGTGGTCCAATAAAGAGAAACT 60.509 45.833 0.00 0.00 37.22 2.66
425 426 3.762288 GGGGTGGTCCAATAAAGAGAAAC 59.238 47.826 0.00 0.00 37.22 2.78
426 427 3.660669 AGGGGTGGTCCAATAAAGAGAAA 59.339 43.478 0.00 0.00 37.22 2.52
427 428 3.265489 AGGGGTGGTCCAATAAAGAGAA 58.735 45.455 0.00 0.00 37.22 2.87
428 429 2.844348 GAGGGGTGGTCCAATAAAGAGA 59.156 50.000 0.00 0.00 37.22 3.10
429 430 2.846827 AGAGGGGTGGTCCAATAAAGAG 59.153 50.000 0.00 0.00 37.22 2.85
430 431 2.576191 CAGAGGGGTGGTCCAATAAAGA 59.424 50.000 0.00 0.00 37.22 2.52
431 432 2.308866 ACAGAGGGGTGGTCCAATAAAG 59.691 50.000 0.00 0.00 37.22 1.85
432 433 2.041081 CACAGAGGGGTGGTCCAATAAA 59.959 50.000 0.00 0.00 37.22 1.40
433 434 1.633432 CACAGAGGGGTGGTCCAATAA 59.367 52.381 0.00 0.00 37.22 1.40
434 435 1.285280 CACAGAGGGGTGGTCCAATA 58.715 55.000 0.00 0.00 37.22 1.90
435 436 0.772124 ACACAGAGGGGTGGTCCAAT 60.772 55.000 0.00 0.00 43.08 3.16
436 437 1.385347 ACACAGAGGGGTGGTCCAA 60.385 57.895 0.00 0.00 43.08 3.53
437 438 2.146724 CACACAGAGGGGTGGTCCA 61.147 63.158 0.00 0.00 43.08 4.02
438 439 2.147387 ACACACAGAGGGGTGGTCC 61.147 63.158 1.84 0.00 43.08 4.46
439 440 1.071471 CACACACAGAGGGGTGGTC 59.929 63.158 1.84 0.00 43.08 4.02
440 441 1.383943 TCACACACAGAGGGGTGGT 60.384 57.895 1.84 0.00 43.08 4.16
441 442 1.071471 GTCACACACAGAGGGGTGG 59.929 63.158 1.84 0.00 43.08 4.61
442 443 0.397941 ATGTCACACACAGAGGGGTG 59.602 55.000 0.00 0.00 44.35 4.61
443 444 0.397941 CATGTCACACACAGAGGGGT 59.602 55.000 0.00 0.00 38.85 4.95
444 445 0.321919 CCATGTCACACACAGAGGGG 60.322 60.000 0.00 0.00 38.85 4.79
445 446 0.686789 TCCATGTCACACACAGAGGG 59.313 55.000 0.00 0.00 38.85 4.30
446 447 2.549064 TTCCATGTCACACACAGAGG 57.451 50.000 0.00 0.00 38.85 3.69
447 448 4.898829 TTTTTCCATGTCACACACAGAG 57.101 40.909 0.00 0.00 38.85 3.35
466 467 2.489329 CACATGACGGGAGAGCATTTTT 59.511 45.455 0.00 0.00 0.00 1.94
467 468 2.086869 CACATGACGGGAGAGCATTTT 58.913 47.619 0.00 0.00 0.00 1.82
468 469 1.278985 TCACATGACGGGAGAGCATTT 59.721 47.619 0.00 0.00 0.00 2.32
469 470 0.904649 TCACATGACGGGAGAGCATT 59.095 50.000 0.00 0.00 0.00 3.56
470 471 0.904649 TTCACATGACGGGAGAGCAT 59.095 50.000 0.00 0.00 0.00 3.79
471 472 0.037326 GTTCACATGACGGGAGAGCA 60.037 55.000 0.00 0.00 0.00 4.26
472 473 0.741221 GGTTCACATGACGGGAGAGC 60.741 60.000 0.00 0.00 0.00 4.09
473 474 0.458543 CGGTTCACATGACGGGAGAG 60.459 60.000 0.00 0.00 0.00 3.20
474 475 1.589630 CGGTTCACATGACGGGAGA 59.410 57.895 0.00 0.00 0.00 3.71
475 476 2.100631 GCGGTTCACATGACGGGAG 61.101 63.158 0.00 0.00 0.00 4.30
476 477 2.047655 GCGGTTCACATGACGGGA 60.048 61.111 0.00 0.00 0.00 5.14
477 478 1.745115 ATGCGGTTCACATGACGGG 60.745 57.895 0.00 0.00 0.00 5.28
478 479 1.425031 CATGCGGTTCACATGACGG 59.575 57.895 0.00 0.00 46.33 4.79
479 480 1.425031 CCATGCGGTTCACATGACG 59.575 57.895 0.00 0.00 46.33 4.35
480 481 1.137404 GCCATGCGGTTCACATGAC 59.863 57.895 0.00 0.00 46.33 3.06
481 482 1.303155 TGCCATGCGGTTCACATGA 60.303 52.632 0.00 0.00 46.33 3.07
482 483 1.138036 CTGCCATGCGGTTCACATG 59.862 57.895 0.00 0.00 43.67 3.21
483 484 0.394762 ATCTGCCATGCGGTTCACAT 60.395 50.000 0.00 0.00 36.18 3.21
484 485 1.002257 ATCTGCCATGCGGTTCACA 60.002 52.632 0.00 0.00 36.18 3.58
485 486 1.723870 GATCTGCCATGCGGTTCAC 59.276 57.895 2.00 0.00 34.76 3.18
486 487 1.815003 CGATCTGCCATGCGGTTCA 60.815 57.895 6.74 0.00 34.42 3.18
487 488 0.882042 ATCGATCTGCCATGCGGTTC 60.882 55.000 0.00 0.00 36.18 3.62
488 489 0.882042 GATCGATCTGCCATGCGGTT 60.882 55.000 18.29 0.00 36.18 4.44
489 490 1.301244 GATCGATCTGCCATGCGGT 60.301 57.895 18.29 0.00 36.18 5.68
490 491 1.301165 TGATCGATCTGCCATGCGG 60.301 57.895 25.02 0.00 36.06 5.69
491 492 0.877213 TGTGATCGATCTGCCATGCG 60.877 55.000 25.02 0.00 0.00 4.73
492 493 0.866427 CTGTGATCGATCTGCCATGC 59.134 55.000 25.02 8.04 0.00 4.06
493 494 0.866427 GCTGTGATCGATCTGCCATG 59.134 55.000 25.02 13.19 0.00 3.66
494 495 0.250209 GGCTGTGATCGATCTGCCAT 60.250 55.000 32.34 2.89 37.85 4.40
495 496 1.144716 GGCTGTGATCGATCTGCCA 59.855 57.895 32.34 22.80 37.85 4.92
496 497 0.599728 GAGGCTGTGATCGATCTGCC 60.600 60.000 31.29 31.29 38.04 4.85
497 498 0.938637 CGAGGCTGTGATCGATCTGC 60.939 60.000 25.02 22.97 41.40 4.26
498 499 0.665298 TCGAGGCTGTGATCGATCTG 59.335 55.000 25.02 15.85 42.61 2.90
499 500 1.066303 GTTCGAGGCTGTGATCGATCT 59.934 52.381 25.02 4.59 46.35 2.75
500 501 1.202302 TGTTCGAGGCTGTGATCGATC 60.202 52.381 18.72 18.72 46.35 3.69
501 502 0.817654 TGTTCGAGGCTGTGATCGAT 59.182 50.000 0.00 0.00 46.35 3.59
502 503 0.817654 ATGTTCGAGGCTGTGATCGA 59.182 50.000 0.00 0.00 45.54 3.59
503 504 2.492019 TATGTTCGAGGCTGTGATCG 57.508 50.000 0.00 0.00 40.26 3.69
504 505 3.786635 AGTTATGTTCGAGGCTGTGATC 58.213 45.455 0.00 0.00 0.00 2.92
505 506 3.430929 GGAGTTATGTTCGAGGCTGTGAT 60.431 47.826 0.00 0.00 0.00 3.06
506 507 2.094182 GGAGTTATGTTCGAGGCTGTGA 60.094 50.000 0.00 0.00 0.00 3.58
507 508 2.093973 AGGAGTTATGTTCGAGGCTGTG 60.094 50.000 0.00 0.00 0.00 3.66
508 509 2.180276 AGGAGTTATGTTCGAGGCTGT 58.820 47.619 0.00 0.00 0.00 4.40
509 510 2.932614 CAAGGAGTTATGTTCGAGGCTG 59.067 50.000 0.00 0.00 0.00 4.85
510 511 2.093447 CCAAGGAGTTATGTTCGAGGCT 60.093 50.000 0.00 0.00 0.00 4.58
511 512 2.280628 CCAAGGAGTTATGTTCGAGGC 58.719 52.381 0.00 0.00 0.00 4.70
512 513 3.611766 ACCAAGGAGTTATGTTCGAGG 57.388 47.619 0.00 0.00 0.00 4.63
513 514 3.125316 GCAACCAAGGAGTTATGTTCGAG 59.875 47.826 0.00 0.00 0.00 4.04
514 515 3.071479 GCAACCAAGGAGTTATGTTCGA 58.929 45.455 0.00 0.00 0.00 3.71
515 516 2.161609 GGCAACCAAGGAGTTATGTTCG 59.838 50.000 0.00 0.00 0.00 3.95
516 517 3.191371 CAGGCAACCAAGGAGTTATGTTC 59.809 47.826 0.00 0.00 37.17 3.18
517 518 3.157087 CAGGCAACCAAGGAGTTATGTT 58.843 45.455 0.00 0.00 37.17 2.71
518 519 2.375174 TCAGGCAACCAAGGAGTTATGT 59.625 45.455 0.00 0.00 37.17 2.29
519 520 2.749621 GTCAGGCAACCAAGGAGTTATG 59.250 50.000 0.00 0.00 37.17 1.90
520 521 2.644798 AGTCAGGCAACCAAGGAGTTAT 59.355 45.455 0.00 0.00 37.17 1.89
521 522 2.054799 AGTCAGGCAACCAAGGAGTTA 58.945 47.619 0.00 0.00 37.17 2.24
522 523 0.846693 AGTCAGGCAACCAAGGAGTT 59.153 50.000 0.00 0.00 37.17 3.01
523 524 0.109342 CAGTCAGGCAACCAAGGAGT 59.891 55.000 0.00 0.00 37.17 3.85
524 525 0.607489 CCAGTCAGGCAACCAAGGAG 60.607 60.000 0.00 0.00 37.17 3.69
525 526 1.455849 CCAGTCAGGCAACCAAGGA 59.544 57.895 0.00 0.00 37.17 3.36
526 527 1.604593 CCCAGTCAGGCAACCAAGG 60.605 63.158 0.00 0.00 35.39 3.61
527 528 0.178992 TTCCCAGTCAGGCAACCAAG 60.179 55.000 0.00 0.00 35.39 3.61
528 529 0.482446 ATTCCCAGTCAGGCAACCAA 59.518 50.000 0.00 0.00 35.39 3.67
529 530 0.038166 GATTCCCAGTCAGGCAACCA 59.962 55.000 0.00 0.00 35.39 3.67
530 531 0.681243 GGATTCCCAGTCAGGCAACC 60.681 60.000 0.00 0.00 35.39 3.77
531 532 0.329596 AGGATTCCCAGTCAGGCAAC 59.670 55.000 0.00 0.00 35.39 4.17
532 533 0.329261 CAGGATTCCCAGTCAGGCAA 59.671 55.000 0.00 0.00 35.39 4.52
533 534 0.547471 TCAGGATTCCCAGTCAGGCA 60.547 55.000 0.00 0.00 35.39 4.75
534 535 0.842635 ATCAGGATTCCCAGTCAGGC 59.157 55.000 0.00 0.00 35.39 4.85
535 536 1.069823 CGATCAGGATTCCCAGTCAGG 59.930 57.143 0.00 0.00 33.88 3.86
536 537 2.034878 TCGATCAGGATTCCCAGTCAG 58.965 52.381 0.00 0.00 33.88 3.51
537 538 1.757118 GTCGATCAGGATTCCCAGTCA 59.243 52.381 0.00 0.00 33.88 3.41
538 539 1.757118 TGTCGATCAGGATTCCCAGTC 59.243 52.381 0.00 0.00 33.88 3.51
539 540 1.866015 TGTCGATCAGGATTCCCAGT 58.134 50.000 0.00 0.00 33.88 4.00
540 541 4.815533 ATATGTCGATCAGGATTCCCAG 57.184 45.455 0.00 0.00 33.88 4.45
541 542 6.874278 AATATATGTCGATCAGGATTCCCA 57.126 37.500 0.00 0.00 33.88 4.37
542 543 6.540189 CCAAATATATGTCGATCAGGATTCCC 59.460 42.308 0.00 0.00 0.00 3.97
543 544 6.037610 GCCAAATATATGTCGATCAGGATTCC 59.962 42.308 0.00 0.00 0.00 3.01
544 545 6.595326 TGCCAAATATATGTCGATCAGGATTC 59.405 38.462 0.00 0.00 0.00 2.52
545 546 6.475504 TGCCAAATATATGTCGATCAGGATT 58.524 36.000 0.00 0.00 0.00 3.01
546 547 6.053632 TGCCAAATATATGTCGATCAGGAT 57.946 37.500 0.00 0.00 0.00 3.24
547 548 5.482163 TGCCAAATATATGTCGATCAGGA 57.518 39.130 0.00 0.00 0.00 3.86
548 549 6.403964 CCAATGCCAAATATATGTCGATCAGG 60.404 42.308 0.00 0.00 0.00 3.86
549 550 6.403964 CCCAATGCCAAATATATGTCGATCAG 60.404 42.308 0.00 0.00 0.00 2.90
550 551 5.415389 CCCAATGCCAAATATATGTCGATCA 59.585 40.000 0.00 0.00 0.00 2.92
551 552 5.415701 ACCCAATGCCAAATATATGTCGATC 59.584 40.000 0.00 0.00 0.00 3.69
552 553 5.324409 ACCCAATGCCAAATATATGTCGAT 58.676 37.500 0.00 0.00 0.00 3.59
553 554 4.724399 ACCCAATGCCAAATATATGTCGA 58.276 39.130 0.00 0.00 0.00 4.20
554 555 5.452078 AACCCAATGCCAAATATATGTCG 57.548 39.130 0.00 0.00 0.00 4.35
559 560 9.836179 AGGATAATTAACCCAATGCCAAATATA 57.164 29.630 8.09 0.00 0.00 0.86
560 561 8.740616 AGGATAATTAACCCAATGCCAAATAT 57.259 30.769 8.09 0.00 0.00 1.28
561 562 8.560124 AAGGATAATTAACCCAATGCCAAATA 57.440 30.769 8.09 0.00 0.00 1.40
562 563 7.450323 AAGGATAATTAACCCAATGCCAAAT 57.550 32.000 8.09 0.00 0.00 2.32
563 564 6.882768 AAGGATAATTAACCCAATGCCAAA 57.117 33.333 8.09 0.00 0.00 3.28
564 565 6.882768 AAAGGATAATTAACCCAATGCCAA 57.117 33.333 8.09 0.00 0.00 4.52
565 566 6.648192 CAAAAGGATAATTAACCCAATGCCA 58.352 36.000 8.09 0.00 0.00 4.92
566 567 5.527214 GCAAAAGGATAATTAACCCAATGCC 59.473 40.000 16.17 0.00 0.00 4.40
567 568 5.527214 GGCAAAAGGATAATTAACCCAATGC 59.473 40.000 17.65 17.65 0.00 3.56
568 569 6.054941 GGGCAAAAGGATAATTAACCCAATG 58.945 40.000 8.09 6.15 34.82 2.82
569 570 5.970021 AGGGCAAAAGGATAATTAACCCAAT 59.030 36.000 8.09 0.00 37.28 3.16
740 741 3.951775 ATAAAATTGGCCGTTTCTGCA 57.048 38.095 0.00 0.00 0.00 4.41
863 864 2.664851 CCGTGCTCTTTGTCGCCA 60.665 61.111 0.00 0.00 0.00 5.69
871 872 4.681978 GGTCACCGCCGTGCTCTT 62.682 66.667 0.00 0.00 40.04 2.85
1275 1276 5.311265 TGCAGTTCATTCATCAGAGTCTTT 58.689 37.500 0.00 0.00 0.00 2.52
1779 1802 0.614812 TCTAGCATGCACTTGGCTCA 59.385 50.000 21.98 0.00 45.15 4.26
1792 1815 2.092968 CAGTTGGCCCATTAGTCTAGCA 60.093 50.000 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.