Multiple sequence alignment - TraesCS2A01G151800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G151800 chr2A 100.000 3827 0 0 1 3827 99795146 99791320 0.000000e+00 7068
1 TraesCS2A01G151800 chr2A 92.074 2435 120 29 895 3289 100113933 100116334 0.000000e+00 3360
2 TraesCS2A01G151800 chr2A 82.703 185 25 6 3650 3827 100116772 100116956 1.420000e-34 158
3 TraesCS2A01G151800 chr2A 90.654 107 10 0 701 807 57217098 57216992 3.990000e-30 143
4 TraesCS2A01G151800 chr2B 91.832 2571 157 27 895 3445 152156811 152159348 0.000000e+00 3535
5 TraesCS2A01G151800 chr2B 95.352 1678 69 3 1049 2723 151909156 151907485 0.000000e+00 2658
6 TraesCS2A01G151800 chr2B 96.357 851 28 1 2696 3543 151907590 151906740 0.000000e+00 1397
7 TraesCS2A01G151800 chr2B 89.732 448 42 4 2 448 108498229 108498673 1.540000e-158 569
8 TraesCS2A01G151800 chr2B 94.054 185 7 3 810 990 151909703 151909519 1.050000e-70 278
9 TraesCS2A01G151800 chr2B 93.069 101 6 1 687 787 108498946 108499045 3.080000e-31 147
10 TraesCS2A01G151800 chr2B 98.485 66 1 0 3762 3827 151906742 151906677 2.420000e-22 117
11 TraesCS2A01G151800 chr2D 92.157 2448 142 24 1004 3436 100311219 100313631 0.000000e+00 3411
12 TraesCS2A01G151800 chr2D 95.945 1603 62 1 1124 2723 100191638 100190036 0.000000e+00 2597
13 TraesCS2A01G151800 chr2D 95.958 1138 37 4 2696 3827 100190141 100189007 0.000000e+00 1838
14 TraesCS2A01G151800 chr2D 97.633 169 4 0 810 978 100192050 100191882 1.340000e-74 291
15 TraesCS2A01G151800 chr2D 83.607 305 36 12 394 686 489922869 489923171 1.350000e-69 274
16 TraesCS2A01G151800 chr2D 90.991 111 8 2 692 802 489923149 489923257 8.570000e-32 148
17 TraesCS2A01G151800 chr2D 90.654 107 9 1 701 807 139258183 139258078 1.430000e-29 141
18 TraesCS2A01G151800 chr1B 85.906 447 53 9 2 443 273477937 273478378 5.790000e-128 468
19 TraesCS2A01G151800 chr1B 84.444 450 46 11 2 448 273612769 273613197 4.570000e-114 422
20 TraesCS2A01G151800 chr1B 86.869 297 30 6 394 686 273613203 273613494 1.330000e-84 324
21 TraesCS2A01G151800 chr1B 85.268 224 26 5 2770 2988 641536035 641535814 1.380000e-54 224
22 TraesCS2A01G151800 chr1D 85.778 450 49 11 1 448 491978821 491978385 2.690000e-126 462
23 TraesCS2A01G151800 chr1D 93.277 119 6 2 693 810 216011369 216011252 1.410000e-39 174
24 TraesCS2A01G151800 chr7D 85.579 423 50 9 394 813 587084376 587083962 2.110000e-117 433
25 TraesCS2A01G151800 chr7D 83.824 204 17 4 1937 2136 589335590 589335781 3.040000e-41 180
26 TraesCS2A01G151800 chr7D 82.653 196 26 7 2146 2334 589315347 589315153 2.360000e-37 167
27 TraesCS2A01G151800 chr7B 88.385 353 31 7 1939 2289 28627320 28627664 2.130000e-112 416
28 TraesCS2A01G151800 chr4D 87.671 292 28 6 397 686 399609524 399609239 2.200000e-87 333
29 TraesCS2A01G151800 chr5B 87.031 293 17 6 394 685 15545601 15545329 1.030000e-80 311
30 TraesCS2A01G151800 chr3B 87.072 263 27 5 394 653 793180931 793181189 1.340000e-74 291
31 TraesCS2A01G151800 chr4A 82.540 315 46 8 137 448 555751446 555751138 6.300000e-68 268
32 TraesCS2A01G151800 chr7A 93.443 122 8 0 1943 2064 83722624 83722745 8.450000e-42 182
33 TraesCS2A01G151800 chr7A 83.333 132 16 2 2278 2403 83725124 83725255 2.420000e-22 117
34 TraesCS2A01G151800 chr4B 87.500 144 13 3 1 142 601797917 601797777 1.100000e-35 161
35 TraesCS2A01G151800 chr5D 91.150 113 10 0 696 808 67921486 67921374 1.840000e-33 154
36 TraesCS2A01G151800 chr3D 92.523 107 7 1 701 807 155958684 155958789 6.620000e-33 152
37 TraesCS2A01G151800 chr5A 88.696 115 12 1 701 814 475782136 475782022 5.160000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G151800 chr2A 99791320 99795146 3826 True 7068.000000 7068 100.0000 1 3827 1 chr2A.!!$R2 3826
1 TraesCS2A01G151800 chr2A 100113933 100116956 3023 False 1759.000000 3360 87.3885 895 3827 2 chr2A.!!$F1 2932
2 TraesCS2A01G151800 chr2B 152156811 152159348 2537 False 3535.000000 3535 91.8320 895 3445 1 chr2B.!!$F1 2550
3 TraesCS2A01G151800 chr2B 151906677 151909703 3026 True 1112.500000 2658 96.0620 810 3827 4 chr2B.!!$R1 3017
4 TraesCS2A01G151800 chr2B 108498229 108499045 816 False 358.000000 569 91.4005 2 787 2 chr2B.!!$F2 785
5 TraesCS2A01G151800 chr2D 100311219 100313631 2412 False 3411.000000 3411 92.1570 1004 3436 1 chr2D.!!$F1 2432
6 TraesCS2A01G151800 chr2D 100189007 100192050 3043 True 1575.333333 2597 96.5120 810 3827 3 chr2D.!!$R2 3017
7 TraesCS2A01G151800 chr1B 273612769 273613494 725 False 373.000000 422 85.6565 2 686 2 chr1B.!!$F2 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 688 0.105658 TCTATCCCGTTGGCTAGGCT 60.106 55.0 18.18 0.0 32.28 4.58 F
665 734 0.179070 GTTTCATCCCTCCCTCGAGC 60.179 60.0 6.99 0.0 34.49 5.03 F
1860 2243 0.392729 TGCACGATGTGATGGATGCA 60.393 50.0 0.24 0.0 40.57 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2243 1.039856 GGTTGTCAAGTGCCCACATT 58.960 50.000 0.82 0.0 0.0 2.71 R
2420 2806 3.303938 TCATCCTCATCAGTCTTCCTCC 58.696 50.000 0.00 0.0 0.0 4.30 R
3102 3500 1.545582 GCAAGCCAGCAATTCCAGTAA 59.454 47.619 0.00 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.050601 GTTTGGGATTTTCAAAATATGTTCACA 57.949 29.630 0.00 0.00 36.11 3.58
84 85 5.529581 TCCAATTTTGTTCAGGAGTTTCC 57.470 39.130 0.00 0.00 36.58 3.13
151 154 9.617975 TTGTTTTGGAATTTGAAAAATGTTCAC 57.382 25.926 0.00 0.00 0.00 3.18
189 194 7.581213 TTTTCTGCTTATTTTCTCCTGTTCA 57.419 32.000 0.00 0.00 0.00 3.18
195 200 8.592105 TGCTTATTTTCTCCTGTTCATTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
201 206 9.710900 ATTTTCTCCTGTTCATTTTTGGTTATC 57.289 29.630 0.00 0.00 0.00 1.75
378 383 7.062956 GGATTCCAAAAATATTCACGTTTCCAC 59.937 37.037 0.00 0.00 0.00 4.02
386 391 7.650834 AATATTCACGTTTCCACATTTTTGG 57.349 32.000 0.00 0.00 38.10 3.28
395 400 5.514274 TTCCACATTTTTGGTCAGAGTTC 57.486 39.130 0.00 0.00 37.93 3.01
396 401 4.531854 TCCACATTTTTGGTCAGAGTTCA 58.468 39.130 0.00 0.00 37.93 3.18
491 556 6.730795 TCAAATTTGAGAAGCGTTCGCTTTTA 60.731 34.615 28.28 16.97 40.65 1.52
502 571 5.397240 AGCGTTCGCTTTTATACAAAAACAC 59.603 36.000 14.02 0.00 38.46 3.32
504 573 5.910723 CGTTCGCTTTTATACAAAAACACCT 59.089 36.000 0.00 0.00 33.33 4.00
505 574 6.415573 CGTTCGCTTTTATACAAAAACACCTT 59.584 34.615 0.00 0.00 33.33 3.50
553 622 6.155827 GGAAATTGACAAAATGTTCGGATCA 58.844 36.000 0.00 0.00 0.00 2.92
594 663 3.120130 CGCGCCATACTAAAACCAAGAAA 60.120 43.478 0.00 0.00 0.00 2.52
600 669 6.071896 GCCATACTAAAACCAAGAAAGCTTCT 60.072 38.462 0.00 0.00 43.15 2.85
619 688 0.105658 TCTATCCCGTTGGCTAGGCT 60.106 55.000 18.18 0.00 32.28 4.58
620 689 0.318762 CTATCCCGTTGGCTAGGCTC 59.681 60.000 18.18 9.59 28.49 4.70
643 712 1.867919 CGAGAGCAACGTGAGGTCCT 61.868 60.000 14.52 0.00 34.17 3.85
645 714 0.759346 AGAGCAACGTGAGGTCCTTT 59.241 50.000 14.52 0.00 34.17 3.11
649 718 1.404035 GCAACGTGAGGTCCTTTGTTT 59.596 47.619 0.00 0.00 0.00 2.83
650 719 2.540973 GCAACGTGAGGTCCTTTGTTTC 60.541 50.000 0.00 0.00 0.00 2.78
662 731 2.359900 CTTTGTTTCATCCCTCCCTCG 58.640 52.381 0.00 0.00 0.00 4.63
665 734 0.179070 GTTTCATCCCTCCCTCGAGC 60.179 60.000 6.99 0.00 34.49 5.03
735 804 5.347620 TTCACTGTATTACGCTAATGGGT 57.652 39.130 0.00 0.00 42.21 4.51
802 871 3.330853 CGAGCGGCGCATAGGAAC 61.331 66.667 35.02 13.84 0.00 3.62
803 872 2.107141 GAGCGGCGCATAGGAACT 59.893 61.111 35.02 10.67 46.37 3.01
804 873 1.951631 GAGCGGCGCATAGGAACTC 60.952 63.158 35.02 16.21 41.75 3.01
805 874 2.967615 GCGGCGCATAGGAACTCC 60.968 66.667 29.21 0.00 41.75 3.85
806 875 2.280186 CGGCGCATAGGAACTCCC 60.280 66.667 10.83 0.00 41.75 4.30
807 876 2.280186 GGCGCATAGGAACTCCCG 60.280 66.667 10.83 0.00 41.75 5.14
808 877 2.967615 GCGCATAGGAACTCCCGC 60.968 66.667 0.30 2.13 41.75 6.13
864 934 4.499633 CTAACCGGGCGGCCCAAT 62.500 66.667 35.63 22.95 45.83 3.16
885 955 4.447342 AAAGCCCATCGCCCCAGG 62.447 66.667 0.00 0.00 38.78 4.45
978 1054 1.618616 CCCGCAAAAACCCTAATCCCT 60.619 52.381 0.00 0.00 0.00 4.20
979 1055 2.357361 CCCGCAAAAACCCTAATCCCTA 60.357 50.000 0.00 0.00 0.00 3.53
1088 1471 3.682292 AATCCAAGGACGCCTCCGC 62.682 63.158 0.00 0.00 42.22 5.54
1314 1697 3.043419 CCCCTCGCCGAGTATCTG 58.957 66.667 13.83 0.00 0.00 2.90
1860 2243 0.392729 TGCACGATGTGATGGATGCA 60.393 50.000 0.24 0.00 40.57 3.96
2070 2453 6.591935 AGAGGTTGTTCTCATGACTACAAAA 58.408 36.000 15.73 0.00 36.30 2.44
2420 2806 4.040952 TGAGGAGGTCAAGGAGAAGAAAAG 59.959 45.833 0.00 0.00 29.64 2.27
2613 2999 3.132646 GCAGTCTGTCTGATGAGGAGAAT 59.867 47.826 6.09 0.00 46.27 2.40
2628 3017 3.054802 AGGAGAATGGTACCAGCAAGAAG 60.055 47.826 21.41 0.00 0.00 2.85
2631 3020 4.985538 AGAATGGTACCAGCAAGAAGAAA 58.014 39.130 21.41 0.00 0.00 2.52
2745 3137 0.620556 AGGAAGGCGGTGATGATGTT 59.379 50.000 0.00 0.00 0.00 2.71
3102 3500 6.436027 TCATCTCATCTTAGTACTCCACCTT 58.564 40.000 0.00 0.00 0.00 3.50
3175 3574 2.086054 AGCTGAAGTAGAGTTTGCCG 57.914 50.000 0.00 0.00 0.00 5.69
3199 3598 7.712639 CCGATCCTTATATTTCCATCATACTGG 59.287 40.741 0.00 0.00 37.66 4.00
3217 3616 3.016736 CTGGTGTGAGAACTTGGTTTGT 58.983 45.455 0.00 0.00 0.00 2.83
3218 3617 2.752354 TGGTGTGAGAACTTGGTTTGTG 59.248 45.455 0.00 0.00 0.00 3.33
3219 3618 2.479560 GGTGTGAGAACTTGGTTTGTGC 60.480 50.000 0.00 0.00 0.00 4.57
3221 3620 3.625764 GTGTGAGAACTTGGTTTGTGCTA 59.374 43.478 0.00 0.00 0.00 3.49
3275 3684 0.038251 TGTGATCGTCTGTGCACCTC 60.038 55.000 15.69 3.67 0.00 3.85
3291 3700 3.434984 GCACCTCAGTCTGAAATTCTGTC 59.565 47.826 3.67 0.00 0.00 3.51
3374 3861 2.306847 GTTCCCGGCATGGTTATTCAT 58.693 47.619 0.00 0.00 35.15 2.57
3646 4176 2.966516 CCCCATTAGTAGTCCACTCTCC 59.033 54.545 0.00 0.00 38.80 3.71
3647 4177 3.630054 CCCCATTAGTAGTCCACTCTCCA 60.630 52.174 0.00 0.00 38.80 3.86
3709 4244 9.181805 CAATCTGCTATTTTGCTGATATTCTTG 57.818 33.333 8.77 2.28 46.09 3.02
3718 4257 5.682234 TGCTGATATTCTTGACCTGAAGA 57.318 39.130 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.103861 TCCTGAACAAAATTGGAAAATGTAAAC 57.896 29.630 0.00 0.00 0.00 2.01
62 63 4.959210 TGGAAACTCCTGAACAAAATTGGA 59.041 37.500 0.00 0.00 37.46 3.53
171 176 7.657354 ACCAAAAATGAACAGGAGAAAATAAGC 59.343 33.333 0.00 0.00 0.00 3.09
328 333 7.925483 TCCATGAACAATTTTTGAACGAAGAAT 59.075 29.630 0.00 0.00 0.00 2.40
334 339 6.423302 TGGAATCCATGAACAATTTTTGAACG 59.577 34.615 0.00 0.00 0.00 3.95
368 373 3.775202 TGACCAAAAATGTGGAAACGTG 58.225 40.909 0.00 0.00 41.65 4.49
369 374 3.697045 TCTGACCAAAAATGTGGAAACGT 59.303 39.130 0.00 0.00 41.65 3.99
447 512 9.494271 AAATTTGAGAAGGAAAATAAAAGGCTC 57.506 29.630 0.00 0.00 0.00 4.70
480 545 5.910723 AGGTGTTTTTGTATAAAAGCGAACG 59.089 36.000 6.96 0.00 39.12 3.95
505 574 5.115773 CGAACGCGGTCATTATTTTGAAAAA 59.884 36.000 25.89 0.00 0.00 1.94
533 602 6.083098 TGTTGATCCGAACATTTTGTCAAT 57.917 33.333 0.00 0.00 30.75 2.57
594 663 0.466124 GCCAACGGGATAGAGAAGCT 59.534 55.000 0.00 0.00 35.59 3.74
635 704 2.716424 AGGGATGAAACAAAGGACCTCA 59.284 45.455 0.00 0.00 0.00 3.86
643 712 1.982226 TCGAGGGAGGGATGAAACAAA 59.018 47.619 0.00 0.00 0.00 2.83
645 714 1.195115 CTCGAGGGAGGGATGAAACA 58.805 55.000 3.91 0.00 36.61 2.83
649 718 1.456518 CTGCTCGAGGGAGGGATGA 60.457 63.158 15.58 0.00 40.80 2.92
650 719 0.468214 TACTGCTCGAGGGAGGGATG 60.468 60.000 15.58 0.00 40.80 3.51
706 775 5.339008 AGCGTAATACAGTGAAAGATCCA 57.661 39.130 0.00 0.00 0.00 3.41
711 780 5.815740 ACCCATTAGCGTAATACAGTGAAAG 59.184 40.000 0.00 0.00 0.00 2.62
735 804 3.147595 CGACTCCATCTGGGCCGA 61.148 66.667 0.00 0.00 36.21 5.54
787 856 2.107141 GAGTTCCTATGCGCCGCT 59.893 61.111 11.67 0.00 0.00 5.52
788 857 2.967615 GGAGTTCCTATGCGCCGC 60.968 66.667 4.18 0.00 0.00 6.53
789 858 2.280186 GGGAGTTCCTATGCGCCG 60.280 66.667 4.18 0.00 35.95 6.46
790 859 2.280186 CGGGAGTTCCTATGCGCC 60.280 66.667 4.18 0.00 35.95 6.53
791 860 2.925162 AAGCGGGAGTTCCTATGCGC 62.925 60.000 0.00 0.00 41.24 6.09
792 861 0.462047 AAAGCGGGAGTTCCTATGCG 60.462 55.000 0.00 0.00 35.10 4.73
793 862 1.401905 CAAAAGCGGGAGTTCCTATGC 59.598 52.381 0.00 0.91 35.95 3.14
794 863 2.939103 CTCAAAAGCGGGAGTTCCTATG 59.061 50.000 0.00 0.00 35.95 2.23
795 864 2.092914 CCTCAAAAGCGGGAGTTCCTAT 60.093 50.000 0.00 0.00 35.95 2.57
796 865 1.278127 CCTCAAAAGCGGGAGTTCCTA 59.722 52.381 0.00 0.00 35.95 2.94
797 866 0.036875 CCTCAAAAGCGGGAGTTCCT 59.963 55.000 0.00 0.00 35.95 3.36
798 867 0.250770 ACCTCAAAAGCGGGAGTTCC 60.251 55.000 0.00 0.00 0.00 3.62
799 868 1.535896 GAACCTCAAAAGCGGGAGTTC 59.464 52.381 0.00 0.00 0.00 3.01
800 869 1.605753 GAACCTCAAAAGCGGGAGTT 58.394 50.000 0.00 0.00 0.00 3.01
801 870 0.250770 GGAACCTCAAAAGCGGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
802 871 0.250727 TGGAACCTCAAAAGCGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
803 872 0.404040 ATGGAACCTCAAAAGCGGGA 59.596 50.000 0.00 0.00 0.00 5.14
804 873 1.743394 GTATGGAACCTCAAAAGCGGG 59.257 52.381 0.00 0.00 0.00 6.13
805 874 2.420022 CTGTATGGAACCTCAAAAGCGG 59.580 50.000 0.00 0.00 0.00 5.52
806 875 2.420022 CCTGTATGGAACCTCAAAAGCG 59.580 50.000 0.00 0.00 38.35 4.68
807 876 2.755103 CCCTGTATGGAACCTCAAAAGC 59.245 50.000 0.00 0.00 38.35 3.51
808 877 4.265073 CTCCCTGTATGGAACCTCAAAAG 58.735 47.826 0.00 0.00 38.35 2.27
1032 1120 0.111061 ATTTGGTGTGCTCAGAGGCA 59.889 50.000 0.00 0.00 40.15 4.75
1038 1126 2.655090 TCTTGGATTTGGTGTGCTCA 57.345 45.000 0.00 0.00 0.00 4.26
1296 1679 2.913060 AGATACTCGGCGAGGGGC 60.913 66.667 36.81 24.91 42.51 5.80
1311 1694 3.405592 GATGACGCCGTACCGCAGA 62.406 63.158 6.99 0.00 0.00 4.26
1314 1697 2.507547 TTGATGACGCCGTACCGC 60.508 61.111 0.00 0.00 0.00 5.68
1317 1700 1.138047 CGAGGTTGATGACGCCGTAC 61.138 60.000 0.00 0.00 0.00 3.67
1371 1754 3.687321 GAGGCGCTTGATCCAGGCA 62.687 63.158 7.64 0.00 36.21 4.75
1374 1757 1.227497 GAGGAGGCGCTTGATCCAG 60.227 63.158 18.80 0.00 35.45 3.86
1578 1961 1.373748 GAACACAGCGCCGGTAAGA 60.374 57.895 2.29 0.00 0.00 2.10
1860 2243 1.039856 GGTTGTCAAGTGCCCACATT 58.960 50.000 0.82 0.00 0.00 2.71
2420 2806 3.303938 TCATCCTCATCAGTCTTCCTCC 58.696 50.000 0.00 0.00 0.00 4.30
2613 2999 4.787551 TCTTTTTCTTCTTGCTGGTACCA 58.212 39.130 15.39 15.39 0.00 3.25
2628 3017 6.625873 TCCTTGCTCTTCTTCTTCTTTTTC 57.374 37.500 0.00 0.00 0.00 2.29
2631 3020 5.069318 CCTTCCTTGCTCTTCTTCTTCTTT 58.931 41.667 0.00 0.00 0.00 2.52
2745 3137 4.145052 TCTCAACTTCACTCTCTGTAGCA 58.855 43.478 0.00 0.00 0.00 3.49
3094 3492 3.441572 CAGCAATTCCAGTAAAGGTGGAG 59.558 47.826 0.00 0.00 45.00 3.86
3102 3500 1.545582 GCAAGCCAGCAATTCCAGTAA 59.454 47.619 0.00 0.00 0.00 2.24
3172 3571 7.225538 CAGTATGATGGAAATATAAGGATCGGC 59.774 40.741 0.00 0.00 39.69 5.54
3175 3574 9.388506 CACCAGTATGATGGAAATATAAGGATC 57.611 37.037 5.11 0.00 43.57 3.36
3199 3598 2.423538 AGCACAAACCAAGTTCTCACAC 59.576 45.455 0.00 0.00 0.00 3.82
3217 3616 9.208022 GTTGCAAGAATGTATATATCAGTAGCA 57.792 33.333 0.00 0.00 0.00 3.49
3218 3617 8.660373 GGTTGCAAGAATGTATATATCAGTAGC 58.340 37.037 0.00 0.00 0.00 3.58
3219 3618 9.710900 TGGTTGCAAGAATGTATATATCAGTAG 57.289 33.333 0.00 0.00 0.00 2.57
3221 3620 7.445402 GGTGGTTGCAAGAATGTATATATCAGT 59.555 37.037 0.00 0.00 0.00 3.41
3291 3700 7.215789 TGGCAAATTTAATGCTACAATATGGG 58.784 34.615 0.92 0.00 43.34 4.00
3646 4176 3.006323 AGAAGCTTCAGTACAGTGGAGTG 59.994 47.826 27.57 3.50 0.00 3.51
3647 4177 3.006323 CAGAAGCTTCAGTACAGTGGAGT 59.994 47.826 27.57 0.00 0.00 3.85
3709 4244 6.477253 ACTAGGGATTTTTCTTCTTCAGGTC 58.523 40.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.