Multiple sequence alignment - TraesCS2A01G151700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G151700 chr2A 100.000 3137 0 0 1 3137 99789761 99786625 0.000000e+00 5794
1 TraesCS2A01G151700 chr2D 94.597 3017 128 19 1 2995 100186874 100183871 0.000000e+00 4636
2 TraesCS2A01G151700 chr2B 92.155 2677 125 39 4 2643 151905410 151902782 0.000000e+00 3701
3 TraesCS2A01G151700 chr2B 94.231 260 15 0 2641 2900 151899587 151899328 6.300000e-107 398
4 TraesCS2A01G151700 chr4A 87.963 324 37 2 1200 1522 202222054 202221732 6.350000e-102 381
5 TraesCS2A01G151700 chr3B 97.222 144 2 2 2996 3137 650613244 650613101 3.130000e-60 243
6 TraesCS2A01G151700 chr1B 97.203 143 3 1 2996 3137 24495235 24495377 1.120000e-59 241
7 TraesCS2A01G151700 chr5D 95.946 148 4 2 2991 3137 5804477 5804623 4.040000e-59 239
8 TraesCS2A01G151700 chr5D 96.503 143 3 2 2996 3137 489353305 489353164 5.230000e-58 235
9 TraesCS2A01G151700 chr6D 96.528 144 3 2 2995 3137 346469260 346469118 1.450000e-58 237
10 TraesCS2A01G151700 chr6D 96.503 143 3 2 2996 3137 453582567 453582708 5.230000e-58 235
11 TraesCS2A01G151700 chr4D 96.503 143 4 1 2996 3137 506130890 506131032 5.230000e-58 235
12 TraesCS2A01G151700 chr4D 94.194 155 6 3 2985 3137 247940258 247940411 1.880000e-57 233
13 TraesCS2A01G151700 chr1A 96.479 142 4 1 2996 3136 415643622 415643763 1.880000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G151700 chr2A 99786625 99789761 3136 True 5794.0 5794 100.000 1 3137 1 chr2A.!!$R1 3136
1 TraesCS2A01G151700 chr2D 100183871 100186874 3003 True 4636.0 4636 94.597 1 2995 1 chr2D.!!$R1 2994
2 TraesCS2A01G151700 chr2B 151899328 151905410 6082 True 2049.5 3701 93.193 4 2900 2 chr2B.!!$R1 2896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 129 0.473886 AGAATATCCCCCACCTCCCG 60.474 60.0 0.00 0.0 0.00 5.14 F
715 725 1.039856 GTTGCAGTTTGGTGGATGGT 58.960 50.0 0.00 0.0 0.00 3.55 F
1696 1724 0.106819 GGTGGAATCAGCAGCTCCAT 60.107 55.0 4.49 0.0 41.21 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1699 0.391661 GAGCTGCTGATTCCACCGAA 60.392 55.000 7.01 0.0 0.00 4.30 R
1866 1894 1.898472 CCTGACTGAGGTGACATGACT 59.102 52.381 0.00 0.0 37.02 3.41 R
3005 6246 0.024619 CGCTTACGCTTACCGCTTTC 59.975 55.000 0.00 0.0 41.76 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.358725 TCCAAGTTTAAGTCAAAGGTGAACC 59.641 40.000 0.00 0.00 34.87 3.62
85 86 7.697352 TGTTGCATAAAAATTTGTCAGTCTG 57.303 32.000 0.00 0.00 0.00 3.51
115 116 7.030768 GGATGCTAACGAGGTTAGAGAATATC 58.969 42.308 17.25 11.45 45.73 1.63
127 129 0.473886 AGAATATCCCCCACCTCCCG 60.474 60.000 0.00 0.00 0.00 5.14
169 171 2.852075 TCCACCCCTTGCTTCCGT 60.852 61.111 0.00 0.00 0.00 4.69
190 192 3.916359 TCATGCCTTCGTGGGTATAAA 57.084 42.857 0.00 0.00 36.00 1.40
337 344 6.053650 ACTTGTGAGTTAGGGAAGTAAACAC 58.946 40.000 0.00 0.00 29.87 3.32
382 389 2.152016 GTGGTCTTGCACTAGGGAAAC 58.848 52.381 0.00 0.00 0.00 2.78
384 391 2.441750 TGGTCTTGCACTAGGGAAACTT 59.558 45.455 0.00 0.00 0.00 2.66
430 437 3.740115 ACCAGCGAGAATTGTTTGTAGT 58.260 40.909 0.00 0.00 0.00 2.73
431 438 4.890088 ACCAGCGAGAATTGTTTGTAGTA 58.110 39.130 0.00 0.00 0.00 1.82
436 443 6.311445 CAGCGAGAATTGTTTGTAGTAGTGAT 59.689 38.462 0.00 0.00 0.00 3.06
507 516 6.521162 ACATTTGTGTCTACAGTGTCACATA 58.479 36.000 14.85 11.51 39.86 2.29
535 544 4.286297 TCGGAACCATCACTTCTCAATT 57.714 40.909 0.00 0.00 0.00 2.32
715 725 1.039856 GTTGCAGTTTGGTGGATGGT 58.960 50.000 0.00 0.00 0.00 3.55
742 752 5.947228 TTGCTCTAGGTTGACTTTGAATG 57.053 39.130 0.00 0.00 0.00 2.67
744 754 3.181516 GCTCTAGGTTGACTTTGAATGCG 60.182 47.826 0.00 0.00 0.00 4.73
771 781 7.871853 AGACACACATGTTAGGTTGAAAATAC 58.128 34.615 0.00 0.00 39.95 1.89
772 782 7.719633 AGACACACATGTTAGGTTGAAAATACT 59.280 33.333 0.00 0.00 39.95 2.12
773 783 8.911918 ACACACATGTTAGGTTGAAAATACTA 57.088 30.769 0.00 0.00 34.46 1.82
817 830 1.826385 GCACTGTATGAAGGGCAAGT 58.174 50.000 0.00 0.00 46.36 3.16
846 859 1.519408 CCAAACTTGGGAGGTACGTG 58.481 55.000 0.00 0.00 44.70 4.49
1332 1357 1.517694 CCAATACGACACGGACCCG 60.518 63.158 6.94 6.94 46.03 5.28
1685 1710 1.542544 CGTAGACGTTCGGTGGAATC 58.457 55.000 0.00 0.00 34.05 2.52
1686 1711 1.135603 CGTAGACGTTCGGTGGAATCA 60.136 52.381 0.00 0.00 34.05 2.57
1687 1712 2.527100 GTAGACGTTCGGTGGAATCAG 58.473 52.381 0.00 0.00 34.05 2.90
1696 1724 0.106819 GGTGGAATCAGCAGCTCCAT 60.107 55.000 4.49 0.00 41.21 3.41
1859 1887 2.232298 GAGGGTTCCGAGCCACTCAG 62.232 65.000 3.43 0.00 46.09 3.35
1866 1894 1.371183 CGAGCCACTCAGGTTTCCA 59.629 57.895 0.00 0.00 40.61 3.53
2100 2128 2.741092 GACCAGGTGAAGGCGACA 59.259 61.111 0.00 0.00 0.00 4.35
2221 2250 9.052759 TCTGAGGTTAGATGTTTAGTGTTTTTC 57.947 33.333 0.00 0.00 0.00 2.29
2225 2254 8.218488 AGGTTAGATGTTTAGTGTTTTTCCTCT 58.782 33.333 0.00 0.00 0.00 3.69
2513 2547 9.319143 GATTAGATATGTTCAGTACTGCTTGTT 57.681 33.333 18.45 4.45 0.00 2.83
2563 2599 9.491406 TGGTATAGTAAACCAGTGGTTAATCTA 57.509 33.333 27.62 25.01 46.20 1.98
2833 6074 5.630680 GTGTGCATCAGGTTACAGAAATTTG 59.369 40.000 0.00 0.00 0.00 2.32
2853 6094 2.292016 TGCCCGTCATTTGTGTGTTAAG 59.708 45.455 0.00 0.00 0.00 1.85
2909 6150 5.049405 GTGAAACACTGAAATGTAGGTCCAG 60.049 44.000 0.00 0.00 36.32 3.86
2912 6153 3.265791 CACTGAAATGTAGGTCCAGAGC 58.734 50.000 0.00 0.00 0.00 4.09
2933 6174 8.625651 CAGAGCTCTACTGCTTCTAAGTTAATA 58.374 37.037 17.75 0.00 44.17 0.98
2972 6213 8.991243 ATTTGTCCATTTGTGAATCTGTATTG 57.009 30.769 0.00 0.00 0.00 1.90
2995 6236 4.787598 CTTCAATCAAGGTGCACAACTAC 58.212 43.478 20.43 0.00 0.00 2.73
2996 6237 3.814625 TCAATCAAGGTGCACAACTACA 58.185 40.909 20.43 0.00 0.00 2.74
2997 6238 4.203226 TCAATCAAGGTGCACAACTACAA 58.797 39.130 20.43 0.00 0.00 2.41
2998 6239 4.826733 TCAATCAAGGTGCACAACTACAAT 59.173 37.500 20.43 0.00 0.00 2.71
2999 6240 4.771590 ATCAAGGTGCACAACTACAATG 57.228 40.909 20.43 2.90 0.00 2.82
3000 6241 3.550820 TCAAGGTGCACAACTACAATGT 58.449 40.909 20.43 0.00 0.00 2.71
3001 6242 3.951037 TCAAGGTGCACAACTACAATGTT 59.049 39.130 20.43 0.00 0.00 2.71
3002 6243 4.036262 TCAAGGTGCACAACTACAATGTTC 59.964 41.667 20.43 0.00 0.00 3.18
3003 6244 3.550820 AGGTGCACAACTACAATGTTCA 58.449 40.909 20.43 0.00 0.00 3.18
3004 6245 3.951037 AGGTGCACAACTACAATGTTCAA 59.049 39.130 20.43 0.00 0.00 2.69
3005 6246 4.036734 AGGTGCACAACTACAATGTTCAAG 59.963 41.667 20.43 0.00 0.00 3.02
3006 6247 4.036262 GGTGCACAACTACAATGTTCAAGA 59.964 41.667 20.43 0.00 0.00 3.02
3007 6248 5.449862 GGTGCACAACTACAATGTTCAAGAA 60.450 40.000 20.43 0.00 0.00 2.52
3008 6249 6.033341 GTGCACAACTACAATGTTCAAGAAA 58.967 36.000 13.17 0.00 0.00 2.52
3009 6250 6.197096 GTGCACAACTACAATGTTCAAGAAAG 59.803 38.462 13.17 0.00 0.00 2.62
3010 6251 5.173854 GCACAACTACAATGTTCAAGAAAGC 59.826 40.000 0.00 0.00 0.00 3.51
3011 6252 5.396362 CACAACTACAATGTTCAAGAAAGCG 59.604 40.000 0.00 0.00 0.00 4.68
3012 6253 4.749245 ACTACAATGTTCAAGAAAGCGG 57.251 40.909 0.00 0.00 0.00 5.52
3013 6254 4.134563 ACTACAATGTTCAAGAAAGCGGT 58.865 39.130 0.00 0.00 0.00 5.68
3014 6255 5.302360 ACTACAATGTTCAAGAAAGCGGTA 58.698 37.500 0.00 0.00 0.00 4.02
3015 6256 5.761234 ACTACAATGTTCAAGAAAGCGGTAA 59.239 36.000 0.00 0.00 0.00 2.85
3016 6257 5.108385 ACAATGTTCAAGAAAGCGGTAAG 57.892 39.130 0.00 0.00 0.00 2.34
3042 6283 4.400961 GAGCGGAAGGCCACAGCT 62.401 66.667 22.19 22.19 45.17 4.24
3043 6284 3.909086 GAGCGGAAGGCCACAGCTT 62.909 63.158 22.66 11.05 45.17 3.74
3044 6285 3.741476 GCGGAAGGCCACAGCTTG 61.741 66.667 5.01 0.00 39.73 4.01
3053 6294 4.883026 CACAGCTTGGAGCAATGC 57.117 55.556 0.00 0.00 45.56 3.56
3054 6295 1.214589 CACAGCTTGGAGCAATGCC 59.785 57.895 0.00 0.00 45.56 4.40
3055 6296 2.338015 ACAGCTTGGAGCAATGCCG 61.338 57.895 0.00 0.00 45.56 5.69
3056 6297 3.446570 AGCTTGGAGCAATGCCGC 61.447 61.111 0.00 0.00 45.56 6.53
3057 6298 3.933048 AGCTTGGAGCAATGCCGCT 62.933 57.895 0.00 0.00 45.56 5.52
3058 6299 2.998279 GCTTGGAGCAATGCCGCTT 61.998 57.895 0.00 0.00 44.01 4.68
3059 6300 1.656818 GCTTGGAGCAATGCCGCTTA 61.657 55.000 0.00 0.00 44.01 3.09
3060 6301 0.810648 CTTGGAGCAATGCCGCTTAA 59.189 50.000 0.00 0.00 44.01 1.85
3061 6302 0.810648 TTGGAGCAATGCCGCTTAAG 59.189 50.000 0.00 0.00 44.01 1.85
3062 6303 1.064783 GGAGCAATGCCGCTTAAGC 59.935 57.895 17.83 17.83 44.01 3.09
3079 6320 4.218722 CGCAGCTTAACCGGGATT 57.781 55.556 6.32 0.00 0.00 3.01
3080 6321 3.372795 CGCAGCTTAACCGGGATTA 57.627 52.632 6.32 0.00 0.00 1.75
3081 6322 1.658994 CGCAGCTTAACCGGGATTAA 58.341 50.000 6.32 1.30 0.00 1.40
3082 6323 1.597663 CGCAGCTTAACCGGGATTAAG 59.402 52.381 16.52 16.52 42.63 1.85
3088 6329 4.690184 CTTAACCGGGATTAAGCGTTTT 57.310 40.909 6.32 0.00 35.84 2.43
3089 6330 5.050644 CTTAACCGGGATTAAGCGTTTTT 57.949 39.130 6.32 0.00 35.84 1.94
3123 6364 7.727331 CCAGAATTTGGCTGTTTTTGAATAA 57.273 32.000 0.00 0.00 40.87 1.40
3124 6365 8.326680 CCAGAATTTGGCTGTTTTTGAATAAT 57.673 30.769 0.00 0.00 40.87 1.28
3125 6366 9.434420 CCAGAATTTGGCTGTTTTTGAATAATA 57.566 29.630 0.00 0.00 40.87 0.98
3128 6369 9.706846 GAATTTGGCTGTTTTTGAATAATATGC 57.293 29.630 0.00 0.00 0.00 3.14
3129 6370 8.789825 ATTTGGCTGTTTTTGAATAATATGCA 57.210 26.923 0.00 0.00 0.00 3.96
3130 6371 7.593875 TTGGCTGTTTTTGAATAATATGCAC 57.406 32.000 0.00 0.00 0.00 4.57
3131 6372 6.695429 TGGCTGTTTTTGAATAATATGCACA 58.305 32.000 0.00 0.00 0.00 4.57
3132 6373 7.157347 TGGCTGTTTTTGAATAATATGCACAA 58.843 30.769 0.00 0.00 0.00 3.33
3133 6374 7.331440 TGGCTGTTTTTGAATAATATGCACAAG 59.669 33.333 0.00 0.00 0.00 3.16
3134 6375 7.545265 GGCTGTTTTTGAATAATATGCACAAGA 59.455 33.333 0.00 0.00 0.00 3.02
3135 6376 8.924691 GCTGTTTTTGAATAATATGCACAAGAA 58.075 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.624344 AGATGAGCAAAGTCAAAGACATG 57.376 39.130 0.00 0.00 34.60 3.21
85 86 2.005971 ACCTCGTTAGCATCCGTTTC 57.994 50.000 0.00 0.00 0.00 2.78
127 129 2.774799 GGTGCGGGATGTGCATTCC 61.775 63.158 9.58 9.58 45.34 3.01
169 171 3.916359 TTATACCCACGAAGGCATGAA 57.084 42.857 0.00 0.00 35.39 2.57
205 207 7.045416 AGCGGACACATGTGACTAATTTATTA 58.955 34.615 31.94 0.00 0.00 0.98
220 222 5.476945 TGATAGTGTATCATAGCGGACACAT 59.523 40.000 6.76 0.00 43.72 3.21
222 224 5.372547 TGATAGTGTATCATAGCGGACAC 57.627 43.478 0.00 0.00 40.09 3.67
250 252 5.489249 ACGAGAGAAGTCACAGTAGTATCA 58.511 41.667 0.00 0.00 0.00 2.15
303 305 6.832384 TCCCTAACTCACAAGTATCGTCTAAT 59.168 38.462 0.00 0.00 33.48 1.73
305 307 5.748402 TCCCTAACTCACAAGTATCGTCTA 58.252 41.667 0.00 0.00 33.48 2.59
306 308 4.597004 TCCCTAACTCACAAGTATCGTCT 58.403 43.478 0.00 0.00 33.48 4.18
310 317 8.092687 TGTTTACTTCCCTAACTCACAAGTATC 58.907 37.037 0.00 0.00 33.48 2.24
313 320 6.053650 GTGTTTACTTCCCTAACTCACAAGT 58.946 40.000 0.00 0.00 37.32 3.16
324 331 2.701951 TGTCCTTCGTGTTTACTTCCCT 59.298 45.455 0.00 0.00 0.00 4.20
337 344 3.498018 TCACAATGAACACATGTCCTTCG 59.502 43.478 0.00 0.00 0.00 3.79
384 391 9.549509 GTCGCAAACATCTATTTATGTGTTTTA 57.450 29.630 0.00 0.00 41.37 1.52
430 437 6.921486 TGTCCACCAACTTACTAATCACTA 57.079 37.500 0.00 0.00 0.00 2.74
431 438 5.818678 TGTCCACCAACTTACTAATCACT 57.181 39.130 0.00 0.00 0.00 3.41
460 467 4.717233 TTTTGCATAGTGGTTAGCATGG 57.283 40.909 0.00 0.00 36.80 3.66
487 495 6.096673 ACATATGTGACACTGTAGACACAA 57.903 37.500 7.78 7.61 44.36 3.33
500 508 4.188462 TGGTTCCGATCAACATATGTGAC 58.812 43.478 9.63 0.90 0.00 3.67
501 509 4.479786 TGGTTCCGATCAACATATGTGA 57.520 40.909 9.63 9.52 0.00 3.58
507 516 3.634397 AGTGATGGTTCCGATCAACAT 57.366 42.857 0.00 0.00 31.65 2.71
706 716 3.004752 AGAGCAATACAACCATCCACC 57.995 47.619 0.00 0.00 0.00 4.61
715 725 6.530120 TCAAAGTCAACCTAGAGCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
742 752 2.955614 ACCTAACATGTGTGTCTACGC 58.044 47.619 0.00 0.00 37.67 4.42
744 754 6.854496 TTTCAACCTAACATGTGTGTCTAC 57.146 37.500 0.00 0.00 37.67 2.59
773 783 8.998377 GCCAAAGTTGTACCATTTTTCATTATT 58.002 29.630 0.00 0.00 0.00 1.40
786 796 4.069304 TCATACAGTGCCAAAGTTGTACC 58.931 43.478 0.00 0.00 0.00 3.34
844 857 3.664107 TCACTGGAACTATTGCACTCAC 58.336 45.455 0.00 0.00 0.00 3.51
917 930 2.580601 CGACGGGGACTGGGTTTCT 61.581 63.158 0.00 0.00 40.47 2.52
918 931 1.896122 ATCGACGGGGACTGGGTTTC 61.896 60.000 0.00 0.00 40.47 2.78
922 947 3.537874 GGATCGACGGGGACTGGG 61.538 72.222 0.00 0.00 40.47 4.45
1033 1058 2.264794 GAAAGAGAGGGCGGCGAA 59.735 61.111 12.98 0.00 0.00 4.70
1332 1357 1.699343 GGCGCATATCCTCGTAGAAC 58.301 55.000 10.83 0.00 34.09 3.01
1603 1628 2.358737 GGTGTTCGCAGGGACAGG 60.359 66.667 0.00 0.00 0.00 4.00
1674 1699 0.391661 GAGCTGCTGATTCCACCGAA 60.392 55.000 7.01 0.00 0.00 4.30
1707 1735 2.085343 AAATGGTGGCAGGGACAGCT 62.085 55.000 2.71 0.00 41.93 4.24
1859 1887 2.224523 TGAGGTGACATGACTGGAAACC 60.225 50.000 0.00 0.00 0.00 3.27
1866 1894 1.898472 CCTGACTGAGGTGACATGACT 59.102 52.381 0.00 0.00 37.02 3.41
1888 1916 6.591834 AGAAAATTCTTCTCGACATCGACAAT 59.408 34.615 0.00 0.00 37.61 2.71
1893 1921 5.497754 CGTCAGAAAATTCTTCTCGACATCG 60.498 44.000 18.57 0.00 34.74 3.84
2221 2250 6.662414 TTTATGCACGAGAAAATGTAGAGG 57.338 37.500 0.00 0.00 0.00 3.69
2225 2254 6.428465 TGTCCTTTTATGCACGAGAAAATGTA 59.572 34.615 0.00 0.00 0.00 2.29
2344 2373 3.374058 ACACTTCAAAACAGAGGACAACG 59.626 43.478 0.00 0.00 0.00 4.10
2513 2547 9.081204 CCATAATTCCATGACCTTCAATTGATA 57.919 33.333 9.40 0.00 0.00 2.15
2563 2599 2.814805 AAACTACCATGCTGCTCCAT 57.185 45.000 0.00 0.00 0.00 3.41
2833 6074 2.292292 ACTTAACACACAAATGACGGGC 59.708 45.455 0.00 0.00 0.00 6.13
2853 6094 7.065803 AGCATTACACTGTATACCACATTGAAC 59.934 37.037 0.00 0.00 39.54 3.18
2909 6150 7.588488 CGTATTAACTTAGAAGCAGTAGAGCTC 59.412 40.741 5.27 5.27 45.89 4.09
2912 6153 9.649024 GTACGTATTAACTTAGAAGCAGTAGAG 57.351 37.037 0.00 0.00 0.00 2.43
2933 6174 8.447833 CAAATGGACAAATAATGTAGTGTACGT 58.552 33.333 0.00 0.00 44.12 3.57
2972 6213 2.035066 AGTTGTGCACCTTGATTGAAGC 59.965 45.455 15.69 0.00 0.00 3.86
2995 6236 3.914364 GCTTACCGCTTTCTTGAACATTG 59.086 43.478 0.00 0.00 35.14 2.82
2996 6237 3.364964 CGCTTACCGCTTTCTTGAACATT 60.365 43.478 0.00 0.00 36.13 2.71
2997 6238 2.159627 CGCTTACCGCTTTCTTGAACAT 59.840 45.455 0.00 0.00 36.13 2.71
2998 6239 1.529438 CGCTTACCGCTTTCTTGAACA 59.471 47.619 0.00 0.00 36.13 3.18
2999 6240 1.529865 ACGCTTACCGCTTTCTTGAAC 59.470 47.619 0.00 0.00 41.76 3.18
3000 6241 1.873698 ACGCTTACCGCTTTCTTGAA 58.126 45.000 0.00 0.00 41.76 2.69
3001 6242 2.728690 TACGCTTACCGCTTTCTTGA 57.271 45.000 0.00 0.00 41.76 3.02
3002 6243 2.474032 GCTTACGCTTACCGCTTTCTTG 60.474 50.000 0.00 0.00 41.76 3.02
3003 6244 1.730612 GCTTACGCTTACCGCTTTCTT 59.269 47.619 0.00 0.00 41.76 2.52
3004 6245 1.356938 GCTTACGCTTACCGCTTTCT 58.643 50.000 0.00 0.00 41.76 2.52
3005 6246 0.024619 CGCTTACGCTTACCGCTTTC 59.975 55.000 0.00 0.00 41.76 2.62
3006 6247 1.356527 CCGCTTACGCTTACCGCTTT 61.357 55.000 0.00 0.00 41.76 3.51
3007 6248 1.808390 CCGCTTACGCTTACCGCTT 60.808 57.895 0.00 0.00 41.76 4.68
3008 6249 2.202703 CCGCTTACGCTTACCGCT 60.203 61.111 0.00 0.00 41.76 5.52
3009 6250 2.202650 TCCGCTTACGCTTACCGC 60.203 61.111 0.00 0.00 41.76 5.68
3010 6251 2.228914 GCTCCGCTTACGCTTACCG 61.229 63.158 0.00 0.00 44.21 4.02
3011 6252 2.228914 CGCTCCGCTTACGCTTACC 61.229 63.158 0.00 0.00 38.22 2.85
3012 6253 2.228914 CCGCTCCGCTTACGCTTAC 61.229 63.158 0.00 0.00 38.22 2.34
3013 6254 1.936436 TTCCGCTCCGCTTACGCTTA 61.936 55.000 0.00 0.00 38.22 3.09
3014 6255 3.291101 TTCCGCTCCGCTTACGCTT 62.291 57.895 0.00 0.00 38.22 4.68
3015 6256 3.701604 CTTCCGCTCCGCTTACGCT 62.702 63.158 0.00 0.00 38.22 5.07
3016 6257 3.255379 CTTCCGCTCCGCTTACGC 61.255 66.667 0.00 0.00 38.22 4.42
3017 6258 2.582498 CCTTCCGCTCCGCTTACG 60.582 66.667 0.00 0.00 39.67 3.18
3018 6259 2.890961 GCCTTCCGCTCCGCTTAC 60.891 66.667 0.00 0.00 0.00 2.34
3019 6260 4.157120 GGCCTTCCGCTCCGCTTA 62.157 66.667 0.00 0.00 37.74 3.09
3025 6266 3.909086 AAGCTGTGGCCTTCCGCTC 62.909 63.158 14.82 0.00 43.26 5.03
3026 6267 3.958860 AAGCTGTGGCCTTCCGCT 61.959 61.111 3.32 7.94 43.26 5.52
3027 6268 3.741476 CAAGCTGTGGCCTTCCGC 61.741 66.667 3.32 5.54 43.16 5.54
3028 6269 3.058160 CCAAGCTGTGGCCTTCCG 61.058 66.667 3.32 0.00 41.72 4.30
3036 6277 1.214589 GGCATTGCTCCAAGCTGTG 59.785 57.895 8.82 0.93 42.97 3.66
3037 6278 2.338015 CGGCATTGCTCCAAGCTGT 61.338 57.895 8.82 0.00 42.97 4.40
3038 6279 2.488355 CGGCATTGCTCCAAGCTG 59.512 61.111 8.82 0.00 42.97 4.24
3039 6280 3.446570 GCGGCATTGCTCCAAGCT 61.447 61.111 8.82 0.00 42.97 3.74
3040 6281 1.656818 TAAGCGGCATTGCTCCAAGC 61.657 55.000 8.82 6.98 46.60 4.01
3041 6282 0.810648 TTAAGCGGCATTGCTCCAAG 59.189 50.000 8.82 0.00 46.60 3.61
3042 6283 0.810648 CTTAAGCGGCATTGCTCCAA 59.189 50.000 8.82 0.00 46.60 3.53
3043 6284 1.656818 GCTTAAGCGGCATTGCTCCA 61.657 55.000 12.53 0.00 46.60 3.86
3044 6285 1.064783 GCTTAAGCGGCATTGCTCC 59.935 57.895 12.53 0.00 46.60 4.70
3045 6286 4.698056 GCTTAAGCGGCATTGCTC 57.302 55.556 12.53 1.09 46.60 4.26
3060 6301 2.536997 AATCCCGGTTAAGCTGCGCT 62.537 55.000 9.73 0.00 42.56 5.92
3061 6302 0.812412 TAATCCCGGTTAAGCTGCGC 60.812 55.000 0.00 0.00 0.00 6.09
3062 6303 1.597663 CTTAATCCCGGTTAAGCTGCG 59.402 52.381 10.62 0.00 35.57 5.18
3067 6308 4.690184 AAAACGCTTAATCCCGGTTAAG 57.310 40.909 16.52 16.52 42.08 1.85
3102 6343 9.706846 GCATATTATTCAAAAACAGCCAAATTC 57.293 29.630 0.00 0.00 0.00 2.17
3103 6344 9.228949 TGCATATTATTCAAAAACAGCCAAATT 57.771 25.926 0.00 0.00 0.00 1.82
3104 6345 8.667463 GTGCATATTATTCAAAAACAGCCAAAT 58.333 29.630 0.00 0.00 0.00 2.32
3105 6346 7.658982 TGTGCATATTATTCAAAAACAGCCAAA 59.341 29.630 0.00 0.00 0.00 3.28
3106 6347 7.157347 TGTGCATATTATTCAAAAACAGCCAA 58.843 30.769 0.00 0.00 0.00 4.52
3107 6348 6.695429 TGTGCATATTATTCAAAAACAGCCA 58.305 32.000 0.00 0.00 0.00 4.75
3108 6349 7.545265 TCTTGTGCATATTATTCAAAAACAGCC 59.455 33.333 0.00 0.00 0.00 4.85
3109 6350 8.464770 TCTTGTGCATATTATTCAAAAACAGC 57.535 30.769 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.