Multiple sequence alignment - TraesCS2A01G150300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G150300 chr2A 100.000 3632 0 0 1703 5334 98121062 98124693 0.000000e+00 6708.0
1 TraesCS2A01G150300 chr2A 100.000 1290 0 0 1 1290 98119360 98120649 0.000000e+00 2383.0
2 TraesCS2A01G150300 chr2A 84.344 511 75 4 2631 3139 97858497 97859004 3.710000e-136 496.0
3 TraesCS2A01G150300 chr2A 92.742 248 17 1 990 1236 97855701 97855948 1.830000e-94 357.0
4 TraesCS2A01G150300 chr2A 95.676 185 6 1 2158 2340 63805713 63805897 4.040000e-76 296.0
5 TraesCS2A01G150300 chr2A 94.681 188 7 3 2158 2343 631865116 631864930 6.760000e-74 289.0
6 TraesCS2A01G150300 chr2A 92.965 199 8 5 2158 2354 38649773 38649967 8.740000e-73 285.0
7 TraesCS2A01G150300 chr2D 95.779 2677 72 15 2511 5173 99126931 99129580 0.000000e+00 4279.0
8 TraesCS2A01G150300 chr2D 96.994 499 15 0 792 1290 99125290 99125788 0.000000e+00 839.0
9 TraesCS2A01G150300 chr2D 84.766 512 71 5 2631 3139 98988784 98989291 1.710000e-139 507.0
10 TraesCS2A01G150300 chr2D 91.830 306 12 4 1849 2146 99126009 99126309 1.070000e-111 414.0
11 TraesCS2A01G150300 chr2D 94.400 250 13 1 990 1238 98986466 98986715 3.010000e-102 383.0
12 TraesCS2A01G150300 chr2D 90.391 281 25 2 1 281 99124765 99125043 8.440000e-98 368.0
13 TraesCS2A01G150300 chr2D 85.214 257 25 10 323 576 99125045 99125291 8.870000e-63 252.0
14 TraesCS2A01G150300 chr2D 95.333 150 7 0 1703 1852 99125823 99125972 6.900000e-59 239.0
15 TraesCS2A01G150300 chr2D 93.382 136 5 3 5200 5334 99129579 99129711 1.170000e-46 198.0
16 TraesCS2A01G150300 chr2D 98.095 105 2 0 2411 2515 99126614 99126718 3.280000e-42 183.0
17 TraesCS2A01G150300 chr2B 94.683 2652 79 14 2347 4964 150705190 150707813 0.000000e+00 4060.0
18 TraesCS2A01G150300 chr2B 98.397 499 7 1 792 1290 150704109 150704606 0.000000e+00 876.0
19 TraesCS2A01G150300 chr2B 94.294 333 12 1 5002 5334 150707808 150708133 2.220000e-138 503.0
20 TraesCS2A01G150300 chr2B 84.180 512 68 9 2631 3139 150606565 150607066 8.030000e-133 484.0
21 TraesCS2A01G150300 chr2B 90.939 309 11 6 1849 2146 150704827 150705129 2.990000e-107 399.0
22 TraesCS2A01G150300 chr2B 98.174 219 4 0 575 793 52914478 52914260 3.010000e-102 383.0
23 TraesCS2A01G150300 chr2B 94.000 250 14 1 990 1238 150604256 150604505 1.400000e-100 377.0
24 TraesCS2A01G150300 chr2B 97.333 150 4 0 1703 1852 150704641 150704790 6.860000e-64 255.0
25 TraesCS2A01G150300 chr2B 80.323 310 46 13 198 499 191399768 191400070 2.500000e-53 220.0
26 TraesCS2A01G150300 chr2B 80.000 310 47 13 198 499 541418718 541419020 1.160000e-51 215.0
27 TraesCS2A01G150300 chr2B 83.621 116 16 3 47 159 800869294 800869179 7.310000e-19 106.0
28 TraesCS2A01G150300 chr2B 96.364 55 2 0 522 576 150704056 150704110 2.050000e-14 91.6
29 TraesCS2A01G150300 chr3B 99.548 221 1 0 575 795 704329657 704329437 2.310000e-108 403.0
30 TraesCS2A01G150300 chr3B 98.174 219 4 0 575 793 29755427 29755645 3.010000e-102 383.0
31 TraesCS2A01G150300 chr3B 79.677 310 48 13 198 499 354466396 354466094 5.410000e-50 209.0
32 TraesCS2A01G150300 chr3B 87.037 54 6 1 58 110 716740585 716740638 5.770000e-05 60.2
33 TraesCS2A01G150300 chr7B 98.198 222 4 0 574 795 411546103 411545882 6.480000e-104 388.0
34 TraesCS2A01G150300 chr7B 96.903 226 7 0 575 800 138662354 138662129 3.900000e-101 379.0
35 TraesCS2A01G150300 chrUn 98.182 220 4 0 575 794 311486152 311485933 8.380000e-103 385.0
36 TraesCS2A01G150300 chr5A 98.174 219 4 0 575 793 675426094 675426312 3.010000e-102 383.0
37 TraesCS2A01G150300 chr5A 94.709 189 7 2 2158 2343 390235306 390235118 1.880000e-74 291.0
38 TraesCS2A01G150300 chr5A 79.672 305 48 11 198 499 632356183 632356476 1.950000e-49 207.0
39 TraesCS2A01G150300 chr5B 97.738 221 5 0 575 795 26029667 26029887 1.080000e-101 381.0
40 TraesCS2A01G150300 chr5B 79.870 308 50 10 198 499 117380379 117380078 1.160000e-51 215.0
41 TraesCS2A01G150300 chr5B 100.000 30 0 0 77 106 440567836 440567865 7.460000e-04 56.5
42 TraesCS2A01G150300 chr7A 96.491 228 7 1 569 796 88320818 88320592 5.040000e-100 375.0
43 TraesCS2A01G150300 chr7A 96.648 179 5 1 2158 2336 701621118 701621295 4.040000e-76 296.0
44 TraesCS2A01G150300 chr7A 95.628 183 6 1 2158 2338 130378373 130378191 5.230000e-75 292.0
45 TraesCS2A01G150300 chr7A 92.574 202 10 5 2158 2358 572183351 572183154 8.740000e-73 285.0
46 TraesCS2A01G150300 chr7A 87.654 81 8 2 35 113 127035922 127035842 5.690000e-15 93.5
47 TraesCS2A01G150300 chr1A 95.652 184 6 1 2158 2339 330766047 330765864 1.450000e-75 294.0
48 TraesCS2A01G150300 chr1A 100.000 30 0 0 77 106 4664202 4664231 7.460000e-04 56.5
49 TraesCS2A01G150300 chr6A 95.135 185 7 2 2158 2341 180309336 180309153 1.880000e-74 291.0
50 TraesCS2A01G150300 chr3D 81.605 299 39 13 198 489 573123542 573123831 3.210000e-57 233.0
51 TraesCS2A01G150300 chr7D 79.612 309 51 10 198 499 236843216 236843519 1.510000e-50 211.0
52 TraesCS2A01G150300 chr7D 78.641 309 54 11 198 499 31457528 31457225 1.520000e-45 195.0
53 TraesCS2A01G150300 chr7D 81.818 132 18 5 32 158 535929739 535929869 7.310000e-19 106.0
54 TraesCS2A01G150300 chr4D 78.964 309 52 11 198 499 262813475 262813173 1.170000e-46 198.0
55 TraesCS2A01G150300 chr5D 82.540 126 20 2 36 159 249083988 249084113 5.650000e-20 110.0
56 TraesCS2A01G150300 chr6B 86.250 80 10 1 35 113 619497414 619497493 9.520000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G150300 chr2A 98119360 98124693 5333 False 4545.500000 6708 100.00000 1 5334 2 chr2A.!!$F4 5333
1 TraesCS2A01G150300 chr2A 97855701 97859004 3303 False 426.500000 496 88.54300 990 3139 2 chr2A.!!$F3 2149
2 TraesCS2A01G150300 chr2D 99124765 99129711 4946 False 846.500000 4279 93.37725 1 5334 8 chr2D.!!$F2 5333
3 TraesCS2A01G150300 chr2D 98986466 98989291 2825 False 445.000000 507 89.58300 990 3139 2 chr2D.!!$F1 2149
4 TraesCS2A01G150300 chr2B 150704056 150708133 4077 False 1030.766667 4060 95.33500 522 5334 6 chr2B.!!$F4 4812
5 TraesCS2A01G150300 chr2B 150604256 150607066 2810 False 430.500000 484 89.09000 990 3139 2 chr2B.!!$F3 2149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 600 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73 F
601 603 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41 F
685 687 1.179152 TCACTAGATTTCCACGCGGA 58.821 50.000 12.47 0.00 40.60 5.54 F
688 690 1.480954 ACTAGATTTCCACGCGGATGT 59.519 47.619 12.47 0.00 42.41 3.06 F
2132 3176 1.405105 TGTGTGCAGGCTGAACTTTTC 59.595 47.619 25.54 13.66 0.00 2.29 F
2154 3198 0.777446 ACCTGCCCTTGTTGGTGTAT 59.223 50.000 0.00 0.00 0.00 2.29 F
3581 6016 1.174712 CCACCACAAGCTCCACAAGG 61.175 60.000 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2960 0.250684 TGGATTTTGAGGCGTGCAGA 60.251 50.000 0.0 0.0 0.00 4.26 R
1991 2961 0.813184 ATGGATTTTGAGGCGTGCAG 59.187 50.000 0.0 0.0 0.00 4.41 R
2132 3176 1.247567 CACCAACAAGGGCAGGTTAG 58.752 55.000 0.0 0.0 43.89 2.34 R
2148 3192 3.449737 TGTGCCCTAGACACTAATACACC 59.550 47.826 14.5 0.0 38.86 4.16 R
3865 6300 0.174389 GAGTCAGAAGATGGCTGCGA 59.826 55.000 0.0 0.0 46.38 5.10 R
3975 6410 1.202382 AGATTAGCACCTCCGTAACGC 60.202 52.381 0.0 0.0 0.00 4.84 R
4457 6897 0.538584 TGGAGCAGTATCAGCCACTG 59.461 55.000 0.0 0.0 45.08 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 7.910441 TTTTACTCCACTAATTTTACTCGGG 57.090 36.000 0.00 0.00 0.00 5.14
116 117 6.855763 TTACTCCACTAATTTTACTCGGGA 57.144 37.500 0.00 0.00 0.00 5.14
118 119 4.776308 ACTCCACTAATTTTACTCGGGAGT 59.224 41.667 6.57 6.57 46.63 3.85
164 165 3.017442 GGTTAGAGATGCCCTTGGTTTC 58.983 50.000 0.00 0.00 0.00 2.78
173 174 4.400529 TGCCCTTGGTTTCTTTTTCTTC 57.599 40.909 0.00 0.00 0.00 2.87
189 190 3.383698 TCTTCATTACTCCCTCCGTCT 57.616 47.619 0.00 0.00 0.00 4.18
203 204 6.189859 TCCCTCCGTCTCTTACAACTTTATA 58.810 40.000 0.00 0.00 0.00 0.98
208 209 9.680315 CTCCGTCTCTTACAACTTTATATAAGG 57.320 37.037 3.19 3.19 0.00 2.69
231 232 5.393678 GGTGTATTATTTTTGGCACGGTGAT 60.394 40.000 13.29 0.00 0.00 3.06
235 236 3.742433 ATTTTTGGCACGGTGATCAAA 57.258 38.095 13.29 16.99 0.00 2.69
236 237 3.526931 TTTTTGGCACGGTGATCAAAA 57.473 38.095 24.92 24.92 37.33 2.44
239 240 1.614996 TGGCACGGTGATCAAAACAT 58.385 45.000 13.29 0.00 0.00 2.71
283 284 9.420118 TGAACAAAATTATCCTTGGCATATAGT 57.580 29.630 0.00 0.00 0.00 2.12
286 287 9.200817 ACAAAATTATCCTTGGCATATAGTTGT 57.799 29.630 0.00 0.00 0.00 3.32
291 292 8.902540 TTATCCTTGGCATATAGTTGTTAGTG 57.097 34.615 0.00 0.00 0.00 2.74
292 293 6.553953 TCCTTGGCATATAGTTGTTAGTGA 57.446 37.500 0.00 0.00 0.00 3.41
293 294 6.346096 TCCTTGGCATATAGTTGTTAGTGAC 58.654 40.000 0.00 0.00 0.00 3.67
294 295 6.070481 TCCTTGGCATATAGTTGTTAGTGACA 60.070 38.462 0.00 0.00 36.19 3.58
295 296 6.597672 CCTTGGCATATAGTTGTTAGTGACAA 59.402 38.462 0.00 0.00 45.70 3.18
309 310 9.826574 TTGTTAGTGACAAGTAAATCAGTTAGT 57.173 29.630 0.00 0.00 43.13 2.24
310 311 9.472361 TGTTAGTGACAAGTAAATCAGTTAGTC 57.528 33.333 0.00 0.00 34.69 2.59
311 312 8.923683 GTTAGTGACAAGTAAATCAGTTAGTCC 58.076 37.037 0.00 0.00 31.02 3.85
312 313 7.062749 AGTGACAAGTAAATCAGTTAGTCCA 57.937 36.000 0.00 0.00 0.00 4.02
313 314 7.155328 AGTGACAAGTAAATCAGTTAGTCCAG 58.845 38.462 0.00 0.00 0.00 3.86
314 315 6.369065 GTGACAAGTAAATCAGTTAGTCCAGG 59.631 42.308 0.00 0.00 0.00 4.45
315 316 6.269077 TGACAAGTAAATCAGTTAGTCCAGGA 59.731 38.462 0.00 0.00 0.00 3.86
316 317 7.074653 ACAAGTAAATCAGTTAGTCCAGGAA 57.925 36.000 0.00 0.00 0.00 3.36
317 318 7.514721 ACAAGTAAATCAGTTAGTCCAGGAAA 58.485 34.615 0.00 0.00 0.00 3.13
318 319 8.164070 ACAAGTAAATCAGTTAGTCCAGGAAAT 58.836 33.333 0.00 0.00 0.00 2.17
319 320 9.667107 CAAGTAAATCAGTTAGTCCAGGAAATA 57.333 33.333 0.00 0.00 0.00 1.40
331 332 5.128827 AGTCCAGGAAATAAAGAGATACGCA 59.871 40.000 0.00 0.00 0.00 5.24
337 338 7.011389 CAGGAAATAAAGAGATACGCACAATCA 59.989 37.037 0.00 0.00 0.00 2.57
343 344 5.330455 AGAGATACGCACAATCAAGAGAA 57.670 39.130 0.00 0.00 0.00 2.87
356 357 9.007901 CACAATCAAGAGAAATACTTTCCTTCT 57.992 33.333 0.00 0.00 40.54 2.85
400 402 6.006449 ACATGCAACAGGAGAAAGATACTTT 58.994 36.000 0.00 0.00 0.00 2.66
401 403 6.150140 ACATGCAACAGGAGAAAGATACTTTC 59.850 38.462 14.05 14.05 0.00 2.62
437 439 9.743581 AGGGATAAATAAAAACGAAACTAGGAA 57.256 29.630 0.00 0.00 0.00 3.36
438 440 9.999009 GGGATAAATAAAAACGAAACTAGGAAG 57.001 33.333 0.00 0.00 0.00 3.46
450 452 8.307921 ACGAAACTAGGAAGAATTAGAACAAC 57.692 34.615 0.00 0.00 0.00 3.32
460 462 8.730680 GGAAGAATTAGAACAACTGCATCTTAA 58.269 33.333 0.00 0.00 30.75 1.85
466 468 9.988350 ATTAGAACAACTGCATCTTAAATTACG 57.012 29.630 0.00 0.00 0.00 3.18
467 469 7.667043 AGAACAACTGCATCTTAAATTACGA 57.333 32.000 0.00 0.00 0.00 3.43
525 527 4.590222 ACTACTACAAAGGAACGGAGGAAA 59.410 41.667 0.00 0.00 0.00 3.13
574 576 2.223249 GCAATGCACGGACGTTATCATT 60.223 45.455 0.00 3.16 0.00 2.57
575 577 3.001838 GCAATGCACGGACGTTATCATTA 59.998 43.478 0.00 0.00 0.00 1.90
576 578 4.514506 CAATGCACGGACGTTATCATTAC 58.485 43.478 12.89 0.00 0.00 1.89
577 579 3.513680 TGCACGGACGTTATCATTACT 57.486 42.857 0.00 0.00 0.00 2.24
578 580 3.441163 TGCACGGACGTTATCATTACTC 58.559 45.455 0.00 0.00 0.00 2.59
579 581 2.793232 GCACGGACGTTATCATTACTCC 59.207 50.000 0.00 0.00 0.00 3.85
580 582 3.378339 CACGGACGTTATCATTACTCCC 58.622 50.000 0.00 0.00 0.00 4.30
581 583 3.067742 CACGGACGTTATCATTACTCCCT 59.932 47.826 0.00 0.00 0.00 4.20
582 584 3.317430 ACGGACGTTATCATTACTCCCTC 59.683 47.826 0.00 0.00 0.00 4.30
583 585 3.305199 CGGACGTTATCATTACTCCCTCC 60.305 52.174 0.00 0.00 0.00 4.30
584 586 3.305199 GGACGTTATCATTACTCCCTCCG 60.305 52.174 0.00 0.00 0.00 4.63
585 587 3.294214 ACGTTATCATTACTCCCTCCGT 58.706 45.455 0.00 0.00 0.00 4.69
586 588 3.317430 ACGTTATCATTACTCCCTCCGTC 59.683 47.826 0.00 0.00 0.00 4.79
587 589 3.305199 CGTTATCATTACTCCCTCCGTCC 60.305 52.174 0.00 0.00 0.00 4.79
588 590 1.329256 ATCATTACTCCCTCCGTCCG 58.671 55.000 0.00 0.00 0.00 4.79
589 591 0.754217 TCATTACTCCCTCCGTCCGG 60.754 60.000 0.00 0.00 0.00 5.14
590 592 1.457079 ATTACTCCCTCCGTCCGGG 60.457 63.158 0.00 0.00 43.38 5.73
591 593 2.234246 ATTACTCCCTCCGTCCGGGT 62.234 60.000 0.00 0.00 42.56 5.28
592 594 3.650298 TACTCCCTCCGTCCGGGTG 62.650 68.421 0.00 0.00 42.56 4.61
594 596 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
595 597 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
596 598 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
597 599 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
598 600 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
599 601 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
600 602 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
601 603 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
602 604 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
603 605 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
604 606 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
605 607 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
606 608 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
607 609 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
608 610 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
609 611 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
610 612 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
611 613 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
612 614 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
613 615 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
614 616 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
615 617 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
616 618 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
617 619 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
618 620 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
619 621 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
620 622 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
621 623 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
622 624 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
623 625 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
624 626 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
625 627 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
626 628 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
627 629 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
628 630 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
629 631 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
630 632 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
631 633 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
632 634 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
633 635 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
634 636 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
635 637 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
636 638 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
637 639 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
638 640 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
639 641 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
641 643 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
681 683 9.529325 TGAAAAGTATATCACTAGATTTCCACG 57.471 33.333 0.00 0.00 36.04 4.94
682 684 7.948278 AAAGTATATCACTAGATTTCCACGC 57.052 36.000 0.00 0.00 36.04 5.34
683 685 5.700846 AGTATATCACTAGATTTCCACGCG 58.299 41.667 3.53 3.53 34.98 6.01
684 686 2.225068 ATCACTAGATTTCCACGCGG 57.775 50.000 12.47 0.00 0.00 6.46
685 687 1.179152 TCACTAGATTTCCACGCGGA 58.821 50.000 12.47 0.00 40.60 5.54
686 688 1.754803 TCACTAGATTTCCACGCGGAT 59.245 47.619 12.47 0.00 42.41 4.18
687 689 1.860950 CACTAGATTTCCACGCGGATG 59.139 52.381 12.47 0.00 42.41 3.51
688 690 1.480954 ACTAGATTTCCACGCGGATGT 59.519 47.619 12.47 0.00 42.41 3.06
689 691 2.691526 ACTAGATTTCCACGCGGATGTA 59.308 45.455 12.47 0.00 42.41 2.29
690 692 2.684001 AGATTTCCACGCGGATGTAA 57.316 45.000 12.47 0.00 42.41 2.41
691 693 3.194005 AGATTTCCACGCGGATGTAAT 57.806 42.857 12.47 3.68 42.41 1.89
692 694 3.541632 AGATTTCCACGCGGATGTAATT 58.458 40.909 12.47 0.00 42.41 1.40
693 695 3.945285 AGATTTCCACGCGGATGTAATTT 59.055 39.130 12.47 0.00 42.41 1.82
694 696 3.750639 TTTCCACGCGGATGTAATTTC 57.249 42.857 12.47 0.00 42.41 2.17
695 697 2.684001 TCCACGCGGATGTAATTTCT 57.316 45.000 12.47 0.00 35.91 2.52
696 698 3.804786 TCCACGCGGATGTAATTTCTA 57.195 42.857 12.47 0.00 35.91 2.10
697 699 4.126208 TCCACGCGGATGTAATTTCTAA 57.874 40.909 12.47 0.00 35.91 2.10
698 700 4.505808 TCCACGCGGATGTAATTTCTAAA 58.494 39.130 12.47 0.00 35.91 1.85
699 701 5.120399 TCCACGCGGATGTAATTTCTAAAT 58.880 37.500 12.47 0.00 35.91 1.40
700 702 6.282167 TCCACGCGGATGTAATTTCTAAATA 58.718 36.000 12.47 0.00 35.91 1.40
701 703 6.932400 TCCACGCGGATGTAATTTCTAAATAT 59.068 34.615 12.47 0.00 35.91 1.28
702 704 8.089597 TCCACGCGGATGTAATTTCTAAATATA 58.910 33.333 12.47 0.00 35.91 0.86
703 705 8.879759 CCACGCGGATGTAATTTCTAAATATAT 58.120 33.333 12.47 0.00 0.00 0.86
761 763 8.897752 AGTTAAATTATCGACCTAGAACTACGT 58.102 33.333 0.00 0.00 0.00 3.57
762 764 8.951969 GTTAAATTATCGACCTAGAACTACGTG 58.048 37.037 0.00 0.00 0.00 4.49
763 765 6.932356 AATTATCGACCTAGAACTACGTGA 57.068 37.500 0.00 0.00 0.00 4.35
764 766 6.932356 ATTATCGACCTAGAACTACGTGAA 57.068 37.500 0.00 0.00 0.00 3.18
765 767 6.932356 TTATCGACCTAGAACTACGTGAAT 57.068 37.500 0.00 0.00 0.00 2.57
766 768 4.611310 TCGACCTAGAACTACGTGAATG 57.389 45.455 0.00 0.00 0.00 2.67
767 769 4.256110 TCGACCTAGAACTACGTGAATGA 58.744 43.478 0.00 0.00 0.00 2.57
768 770 4.093998 TCGACCTAGAACTACGTGAATGAC 59.906 45.833 0.00 0.00 0.00 3.06
769 771 4.094590 CGACCTAGAACTACGTGAATGACT 59.905 45.833 0.00 0.00 0.00 3.41
770 772 5.391736 CGACCTAGAACTACGTGAATGACTT 60.392 44.000 0.00 0.00 0.00 3.01
771 773 6.183360 CGACCTAGAACTACGTGAATGACTTA 60.183 42.308 0.00 0.00 0.00 2.24
772 774 7.466996 CGACCTAGAACTACGTGAATGACTTAT 60.467 40.741 0.00 0.00 0.00 1.73
773 775 8.743085 ACCTAGAACTACGTGAATGACTTATA 57.257 34.615 0.00 0.00 0.00 0.98
774 776 8.619546 ACCTAGAACTACGTGAATGACTTATAC 58.380 37.037 0.00 0.00 0.00 1.47
775 777 8.618677 CCTAGAACTACGTGAATGACTTATACA 58.381 37.037 0.00 0.00 0.00 2.29
776 778 9.435802 CTAGAACTACGTGAATGACTTATACAC 57.564 37.037 0.00 0.00 0.00 2.90
777 779 7.256286 AGAACTACGTGAATGACTTATACACC 58.744 38.462 0.00 0.00 0.00 4.16
778 780 5.575957 ACTACGTGAATGACTTATACACCG 58.424 41.667 0.00 0.00 0.00 4.94
779 781 3.777478 ACGTGAATGACTTATACACCGG 58.223 45.455 0.00 0.00 0.00 5.28
780 782 3.120792 CGTGAATGACTTATACACCGGG 58.879 50.000 6.32 0.00 0.00 5.73
781 783 3.181484 CGTGAATGACTTATACACCGGGA 60.181 47.826 6.32 0.00 0.00 5.14
782 784 4.500887 CGTGAATGACTTATACACCGGGAT 60.501 45.833 6.32 0.00 0.00 3.85
783 785 4.750098 GTGAATGACTTATACACCGGGATG 59.250 45.833 6.32 0.00 0.00 3.51
784 786 4.202315 TGAATGACTTATACACCGGGATGG 60.202 45.833 6.32 0.00 46.41 3.51
785 787 3.035055 TGACTTATACACCGGGATGGA 57.965 47.619 6.32 0.00 42.00 3.41
786 788 2.963101 TGACTTATACACCGGGATGGAG 59.037 50.000 6.32 0.00 42.00 3.86
787 789 2.299297 GACTTATACACCGGGATGGAGG 59.701 54.545 6.32 0.00 42.00 4.30
788 790 2.326428 CTTATACACCGGGATGGAGGT 58.674 52.381 6.32 0.00 42.00 3.85
789 791 3.117016 ACTTATACACCGGGATGGAGGTA 60.117 47.826 6.32 0.00 42.00 3.08
790 792 2.011122 ATACACCGGGATGGAGGTAG 57.989 55.000 6.32 0.00 42.00 3.18
796 798 2.515429 ACCGGGATGGAGGTAGTAGTTA 59.485 50.000 6.32 0.00 42.00 2.24
927 929 3.015145 CCCCACTACCCACCCCAG 61.015 72.222 0.00 0.00 0.00 4.45
1756 1815 3.039202 GCCGCTTCGATGGTTGGTG 62.039 63.158 0.00 0.00 0.00 4.17
1827 1886 5.039645 AGGGTTTGGATCGGGATATGATAT 58.960 41.667 0.00 0.00 0.00 1.63
1838 2041 6.499436 TCGGGATATGATATGGGAAGTTCTA 58.501 40.000 2.25 0.00 0.00 2.10
1912 2275 5.048013 ACATGTCTGTCTTATTCTGTCGACA 60.048 40.000 18.88 18.88 35.35 4.35
1953 2923 1.548081 TGTGGGCATCAATGGTGAAG 58.452 50.000 0.00 0.00 37.30 3.02
1984 2954 3.507622 GCAGGCTTTTTCTGGAGTTATGT 59.492 43.478 0.00 0.00 33.16 2.29
1989 2959 7.004691 AGGCTTTTTCTGGAGTTATGTTAGTT 58.995 34.615 0.00 0.00 0.00 2.24
1990 2960 7.505923 AGGCTTTTTCTGGAGTTATGTTAGTTT 59.494 33.333 0.00 0.00 0.00 2.66
1991 2961 7.808381 GGCTTTTTCTGGAGTTATGTTAGTTTC 59.192 37.037 0.00 0.00 0.00 2.78
1992 2962 8.568794 GCTTTTTCTGGAGTTATGTTAGTTTCT 58.431 33.333 0.00 0.00 0.00 2.52
1993 2963 9.884465 CTTTTTCTGGAGTTATGTTAGTTTCTG 57.116 33.333 0.00 0.00 0.00 3.02
2032 3002 6.013898 CCATATCTGTCTCATGGGATACTTGT 60.014 42.308 0.00 0.00 36.38 3.16
2094 3072 4.839121 ACTGGTTATTGCTCGGAACAATA 58.161 39.130 9.22 9.22 0.00 1.90
2132 3176 1.405105 TGTGTGCAGGCTGAACTTTTC 59.595 47.619 25.54 13.66 0.00 2.29
2146 3190 3.595190 ACTTTTCTAACCTGCCCTTGT 57.405 42.857 0.00 0.00 0.00 3.16
2148 3192 3.636764 ACTTTTCTAACCTGCCCTTGTTG 59.363 43.478 0.00 0.00 0.00 3.33
2149 3193 2.286365 TTCTAACCTGCCCTTGTTGG 57.714 50.000 0.00 0.00 0.00 3.77
2150 3194 1.145571 TCTAACCTGCCCTTGTTGGT 58.854 50.000 0.00 0.00 0.00 3.67
2151 3195 1.202879 TCTAACCTGCCCTTGTTGGTG 60.203 52.381 0.00 0.00 32.53 4.17
2154 3198 0.777446 ACCTGCCCTTGTTGGTGTAT 59.223 50.000 0.00 0.00 0.00 2.29
2157 3201 3.016736 CCTGCCCTTGTTGGTGTATTAG 58.983 50.000 0.00 0.00 0.00 1.73
2158 3202 3.561313 CCTGCCCTTGTTGGTGTATTAGT 60.561 47.826 0.00 0.00 0.00 2.24
2161 3205 3.439129 GCCCTTGTTGGTGTATTAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
2162 3206 4.806286 GCCCTTGTTGGTGTATTAGTGTCT 60.806 45.833 0.00 0.00 0.00 3.41
2163 3207 5.570034 GCCCTTGTTGGTGTATTAGTGTCTA 60.570 44.000 0.00 0.00 0.00 2.59
2164 3208 6.106673 CCCTTGTTGGTGTATTAGTGTCTAG 58.893 44.000 0.00 0.00 0.00 2.43
2165 3209 6.106673 CCTTGTTGGTGTATTAGTGTCTAGG 58.893 44.000 0.00 0.00 0.00 3.02
2167 3211 4.081309 TGTTGGTGTATTAGTGTCTAGGGC 60.081 45.833 0.00 0.00 0.00 5.19
2169 3213 3.449737 TGGTGTATTAGTGTCTAGGGCAC 59.550 47.826 9.40 9.40 37.13 5.01
2170 3214 3.449737 GGTGTATTAGTGTCTAGGGCACA 59.550 47.826 16.66 0.68 39.17 4.57
2171 3215 4.101119 GGTGTATTAGTGTCTAGGGCACAT 59.899 45.833 16.66 8.06 39.17 3.21
2172 3216 5.396436 GGTGTATTAGTGTCTAGGGCACATT 60.396 44.000 16.66 3.10 39.17 2.71
2173 3217 6.113411 GTGTATTAGTGTCTAGGGCACATTT 58.887 40.000 16.66 6.64 39.17 2.32
2176 3220 6.808321 ATTAGTGTCTAGGGCACATTTAGA 57.192 37.500 16.66 0.00 39.17 2.10
2193 3237 8.147642 ACATTTAGATGTGCTCTAGTTATTGC 57.852 34.615 0.00 0.00 44.64 3.56
2206 3250 8.494347 GCTCTAGTTATTGCACATCTAAATGAG 58.506 37.037 0.00 0.00 36.67 2.90
2207 3251 9.539825 CTCTAGTTATTGCACATCTAAATGAGT 57.460 33.333 0.00 0.00 36.67 3.41
2211 3255 9.182214 AGTTATTGCACATCTAAATGAGTGAAT 57.818 29.630 0.00 0.00 36.67 2.57
2213 3257 7.634671 ATTGCACATCTAAATGAGTGAATCA 57.365 32.000 0.00 0.00 43.70 2.57
2214 3258 7.451501 TTGCACATCTAAATGAGTGAATCAA 57.548 32.000 0.00 0.00 42.53 2.57
2215 3259 7.080353 TGCACATCTAAATGAGTGAATCAAG 57.920 36.000 0.00 0.00 42.53 3.02
2216 3260 5.970023 GCACATCTAAATGAGTGAATCAAGC 59.030 40.000 0.00 0.00 42.53 4.01
2217 3261 6.403964 GCACATCTAAATGAGTGAATCAAGCA 60.404 38.462 0.00 0.00 42.53 3.91
2218 3262 7.681304 GCACATCTAAATGAGTGAATCAAGCAT 60.681 37.037 0.00 0.00 42.53 3.79
2233 3321 9.288576 TGAATCAAGCATAAAGAGAGAGAAAAA 57.711 29.630 0.00 0.00 0.00 1.94
2256 3344 8.833231 AAAAGAGAGAGAAAATATTCACACGA 57.167 30.769 0.00 0.00 38.06 4.35
2257 3345 8.833231 AAAGAGAGAGAAAATATTCACACGAA 57.167 30.769 0.00 0.00 38.06 3.85
2259 3347 8.417780 AGAGAGAGAAAATATTCACACGAATG 57.582 34.615 0.00 0.00 42.00 2.67
2260 3348 8.037758 AGAGAGAGAAAATATTCACACGAATGT 58.962 33.333 0.00 0.00 42.00 2.71
2261 3349 8.190888 AGAGAGAAAATATTCACACGAATGTC 57.809 34.615 0.00 0.00 42.00 3.06
2262 3350 7.819415 AGAGAGAAAATATTCACACGAATGTCA 59.181 33.333 0.00 0.00 42.00 3.58
2263 3351 8.322906 AGAGAAAATATTCACACGAATGTCAA 57.677 30.769 0.00 0.00 42.00 3.18
2264 3352 8.950210 AGAGAAAATATTCACACGAATGTCAAT 58.050 29.630 0.00 0.00 42.00 2.57
2265 3353 8.900511 AGAAAATATTCACACGAATGTCAATG 57.099 30.769 0.00 0.00 42.00 2.82
2266 3354 8.514594 AGAAAATATTCACACGAATGTCAATGT 58.485 29.630 0.00 0.00 42.00 2.71
2269 3357 9.773328 AAATATTCACACGAATGTCAATGTAAG 57.227 29.630 0.00 0.00 42.00 2.34
2270 3358 8.716646 ATATTCACACGAATGTCAATGTAAGA 57.283 30.769 0.00 0.00 42.00 2.10
2271 3359 7.615582 ATTCACACGAATGTCAATGTAAGAT 57.384 32.000 0.00 0.00 40.45 2.40
2272 3360 6.647212 TCACACGAATGTCAATGTAAGATC 57.353 37.500 0.00 0.00 36.72 2.75
2274 3362 6.648725 TCACACGAATGTCAATGTAAGATCAA 59.351 34.615 0.00 0.00 36.72 2.57
2275 3363 7.334171 TCACACGAATGTCAATGTAAGATCAAT 59.666 33.333 0.00 0.00 36.72 2.57
2276 3364 7.427318 CACACGAATGTCAATGTAAGATCAATG 59.573 37.037 0.00 0.00 36.72 2.82
2278 3366 7.637519 CACGAATGTCAATGTAAGATCAATGAC 59.362 37.037 7.62 7.62 44.01 3.06
2284 3372 9.835389 TGTCAATGTAAGATCAATGACATATGA 57.165 29.630 10.38 0.00 46.46 2.15
2294 3382 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
2295 3383 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
2296 3384 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
2297 3385 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
2298 3386 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
2299 3387 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
2300 3388 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
2301 3389 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
2302 3390 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
2306 3394 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
2308 3396 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
2370 3458 7.615365 ACACTTAGATTGGGCATTAGAAAATCA 59.385 33.333 0.00 0.00 31.15 2.57
2378 3466 4.949856 GGGCATTAGAAAATCAGAGACCAA 59.050 41.667 0.00 0.00 0.00 3.67
2383 3674 8.031277 GCATTAGAAAATCAGAGACCAACATTT 58.969 33.333 0.00 0.00 0.00 2.32
2436 4480 3.938963 GGATTCGGCTTTTATGTGACTCA 59.061 43.478 0.00 0.00 0.00 3.41
2526 4787 9.740710 AAAGGTTTATTACTAGCATTGAGACTT 57.259 29.630 0.00 0.00 0.00 3.01
2580 4846 5.391736 GCTGAGTTCTTCATTGAATGAGTGG 60.392 44.000 8.01 3.73 40.94 4.00
2582 4848 4.990526 AGTTCTTCATTGAATGAGTGGGT 58.009 39.130 8.01 0.00 40.94 4.51
2583 4849 5.388654 AGTTCTTCATTGAATGAGTGGGTT 58.611 37.500 8.01 0.00 40.94 4.11
2584 4850 5.242393 AGTTCTTCATTGAATGAGTGGGTTG 59.758 40.000 8.01 0.00 40.94 3.77
2585 4851 4.728772 TCTTCATTGAATGAGTGGGTTGT 58.271 39.130 8.01 0.00 40.94 3.32
2586 4852 4.520111 TCTTCATTGAATGAGTGGGTTGTG 59.480 41.667 8.01 0.00 40.94 3.33
2587 4853 4.097551 TCATTGAATGAGTGGGTTGTGA 57.902 40.909 3.29 0.00 33.59 3.58
2588 4854 4.468713 TCATTGAATGAGTGGGTTGTGAA 58.531 39.130 3.29 0.00 33.59 3.18
2589 4855 4.278170 TCATTGAATGAGTGGGTTGTGAAC 59.722 41.667 3.29 0.00 33.59 3.18
2991 5426 3.953612 ACACTGTTCCAAATTCTTCAGCA 59.046 39.130 0.00 0.00 0.00 4.41
2994 5429 2.957680 TGTTCCAAATTCTTCAGCAGCA 59.042 40.909 0.00 0.00 0.00 4.41
2997 5432 1.271379 CCAAATTCTTCAGCAGCAGCA 59.729 47.619 3.17 0.00 45.49 4.41
3231 5666 5.813383 ACACCATCATCAAGTTCTTCATCT 58.187 37.500 0.00 0.00 0.00 2.90
3242 5677 5.317733 AGTTCTTCATCTAGTCCTGAACG 57.682 43.478 0.00 0.00 37.82 3.95
3581 6016 1.174712 CCACCACAAGCTCCACAAGG 61.175 60.000 0.00 0.00 0.00 3.61
3604 6039 1.271926 GGCATACTGGTGTTCCCACTT 60.272 52.381 0.00 0.00 41.53 3.16
3702 6137 4.504864 CGGCTGAATATTTCTGGATACCCA 60.505 45.833 0.00 0.00 40.95 4.51
3972 6407 5.858381 ACCGAACAGCATATATCAGATTGT 58.142 37.500 0.00 0.00 0.00 2.71
3975 6410 6.347160 CCGAACAGCATATATCAGATTGTGTG 60.347 42.308 0.00 0.00 0.00 3.82
3981 6416 6.146184 AGCATATATCAGATTGTGTGCGTTAC 59.854 38.462 9.88 0.00 36.53 2.50
4094 6529 4.584325 TGTGTCATTCTTTCTGGGAAAAGG 59.416 41.667 0.00 0.00 36.97 3.11
4197 6632 1.192146 TATCTACCGCCCCTGGATGC 61.192 60.000 0.00 0.00 0.00 3.91
4215 6650 2.893637 TGCTCTGCGATAAAGAACTCC 58.106 47.619 0.00 0.00 0.00 3.85
4285 6722 9.450807 CTGTATTTTTCTTGACTTTGTGGTTAG 57.549 33.333 0.00 0.00 0.00 2.34
4286 6723 8.962679 TGTATTTTTCTTGACTTTGTGGTTAGT 58.037 29.630 0.00 0.00 0.00 2.24
4329 6769 1.134965 AGGTATCACGCTGCAACTCTC 60.135 52.381 0.00 0.00 0.00 3.20
4365 6805 2.721425 TGAAACGTCTTTCCCTTGGT 57.279 45.000 0.00 0.00 35.75 3.67
4377 6817 3.943671 TCCCTTGGTGAAGTTCTTCAA 57.056 42.857 15.44 7.66 32.04 2.69
4457 6897 2.101582 AGCCTCTATCATGGAACGTGAC 59.898 50.000 0.00 0.00 0.00 3.67
4515 6955 3.898123 CCTAGCCTGGCTACATTTCTCTA 59.102 47.826 24.10 2.20 40.44 2.43
4516 6956 4.345257 CCTAGCCTGGCTACATTTCTCTAA 59.655 45.833 24.10 1.65 40.44 2.10
4520 6960 5.072872 AGCCTGGCTACATTTCTCTAATCAT 59.927 40.000 21.98 0.00 36.99 2.45
4523 6963 7.279758 GCCTGGCTACATTTCTCTAATCATATC 59.720 40.741 12.43 0.00 0.00 1.63
4540 6980 6.173427 TCATATCGGATGGACAATTTGAGA 57.827 37.500 2.79 0.00 0.00 3.27
4542 6982 6.652062 TCATATCGGATGGACAATTTGAGATG 59.348 38.462 2.79 0.00 0.00 2.90
4618 7075 0.250597 GGTGGCCCAGTCTACGTTTT 60.251 55.000 0.00 0.00 0.00 2.43
4619 7076 0.872388 GTGGCCCAGTCTACGTTTTG 59.128 55.000 0.00 0.00 0.00 2.44
4620 7077 0.887387 TGGCCCAGTCTACGTTTTGC 60.887 55.000 0.00 0.00 0.00 3.68
4621 7078 1.583495 GGCCCAGTCTACGTTTTGCC 61.583 60.000 0.00 0.00 0.00 4.52
4623 7080 1.600023 CCCAGTCTACGTTTTGCCAA 58.400 50.000 0.00 0.00 0.00 4.52
4624 7081 2.159382 CCCAGTCTACGTTTTGCCAAT 58.841 47.619 0.00 0.00 0.00 3.16
4627 7084 4.398044 CCCAGTCTACGTTTTGCCAATATT 59.602 41.667 0.00 0.00 0.00 1.28
4628 7085 5.105917 CCCAGTCTACGTTTTGCCAATATTT 60.106 40.000 0.00 0.00 0.00 1.40
4629 7086 6.027749 CCAGTCTACGTTTTGCCAATATTTC 58.972 40.000 0.00 0.00 0.00 2.17
4630 7087 6.027749 CAGTCTACGTTTTGCCAATATTTCC 58.972 40.000 0.00 0.00 0.00 3.13
4631 7088 5.025826 GTCTACGTTTTGCCAATATTTCCG 58.974 41.667 0.00 0.00 0.00 4.30
4632 7089 3.926821 ACGTTTTGCCAATATTTCCGT 57.073 38.095 0.00 0.00 0.00 4.69
4633 7090 4.245845 ACGTTTTGCCAATATTTCCGTT 57.754 36.364 0.00 0.00 0.00 4.44
4634 7091 4.623002 ACGTTTTGCCAATATTTCCGTTT 58.377 34.783 0.00 0.00 0.00 3.60
4635 7092 4.682401 ACGTTTTGCCAATATTTCCGTTTC 59.318 37.500 0.00 0.00 0.00 2.78
4636 7093 4.681942 CGTTTTGCCAATATTTCCGTTTCA 59.318 37.500 0.00 0.00 0.00 2.69
4637 7094 5.164100 CGTTTTGCCAATATTTCCGTTTCAG 60.164 40.000 0.00 0.00 0.00 3.02
4638 7095 5.713792 TTTGCCAATATTTCCGTTTCAGA 57.286 34.783 0.00 0.00 0.00 3.27
4639 7096 5.713792 TTGCCAATATTTCCGTTTCAGAA 57.286 34.783 0.00 0.00 0.00 3.02
4640 7097 5.913137 TGCCAATATTTCCGTTTCAGAAT 57.087 34.783 0.00 0.00 0.00 2.40
4641 7098 5.649557 TGCCAATATTTCCGTTTCAGAATG 58.350 37.500 0.00 0.00 37.54 2.67
4691 7148 7.265673 GTGTATGAGCTCAGGTTTCACTATTA 58.734 38.462 22.96 1.80 0.00 0.98
4692 7149 7.928706 GTGTATGAGCTCAGGTTTCACTATTAT 59.071 37.037 22.96 2.16 0.00 1.28
4739 7200 7.379529 CAGTTAGTTTTTGCAATTCGAAGACAT 59.620 33.333 3.35 0.00 34.32 3.06
4787 7248 4.630894 TTTGTTCAGGTAGTGCAACAAG 57.369 40.909 0.00 0.00 41.43 3.16
4902 7363 0.453390 GCAGTTGCTATCCAAGGTGC 59.547 55.000 0.00 0.00 37.40 5.01
4962 7423 9.193806 AGTCTTAAAATGCATGGATTGTTAGAT 57.806 29.630 18.19 8.04 0.00 1.98
4964 7425 9.412460 TCTTAAAATGCATGGATTGTTAGATCT 57.588 29.630 13.66 0.00 0.00 2.75
5122 7583 4.220602 TGTCATGCTGTGTGTAGATACTGT 59.779 41.667 0.00 0.00 0.00 3.55
5322 7784 5.689383 TTAGTTTTTGCTTCTGCTAGTGG 57.311 39.130 0.00 0.00 40.48 4.00
5325 7787 2.928801 TTTGCTTCTGCTAGTGGTGA 57.071 45.000 0.00 0.00 40.48 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.092771 TCGAGTGAAGTTGGTATCTTCG 57.907 45.455 0.00 0.00 42.68 3.79
132 133 6.619852 AGGGCATCTCTAACCTATTCCTTAAA 59.380 38.462 0.00 0.00 0.00 1.52
134 135 5.727630 AGGGCATCTCTAACCTATTCCTTA 58.272 41.667 0.00 0.00 0.00 2.69
136 137 4.220861 AGGGCATCTCTAACCTATTCCT 57.779 45.455 0.00 0.00 0.00 3.36
140 141 3.669949 ACCAAGGGCATCTCTAACCTAT 58.330 45.455 0.00 0.00 31.88 2.57
141 142 3.130734 ACCAAGGGCATCTCTAACCTA 57.869 47.619 0.00 0.00 31.88 3.08
142 143 1.972588 ACCAAGGGCATCTCTAACCT 58.027 50.000 0.00 0.00 34.04 3.50
144 145 3.956744 AGAAACCAAGGGCATCTCTAAC 58.043 45.455 0.00 0.00 0.00 2.34
146 147 4.657814 AAAGAAACCAAGGGCATCTCTA 57.342 40.909 0.00 0.00 0.00 2.43
147 148 3.532641 AAAGAAACCAAGGGCATCTCT 57.467 42.857 0.00 0.00 0.00 3.10
148 149 4.281941 AGAAAAAGAAACCAAGGGCATCTC 59.718 41.667 0.00 0.00 0.00 2.75
150 151 4.607293 AGAAAAAGAAACCAAGGGCATC 57.393 40.909 0.00 0.00 0.00 3.91
164 165 5.246307 ACGGAGGGAGTAATGAAGAAAAAG 58.754 41.667 0.00 0.00 0.00 2.27
173 174 3.952323 TGTAAGAGACGGAGGGAGTAATG 59.048 47.826 0.00 0.00 0.00 1.90
203 204 6.378848 ACCGTGCCAAAAATAATACACCTTAT 59.621 34.615 0.00 0.00 0.00 1.73
208 209 5.049398 TCACCGTGCCAAAAATAATACAC 57.951 39.130 0.00 0.00 0.00 2.90
220 221 1.614996 ATGTTTTGATCACCGTGCCA 58.385 45.000 0.00 0.00 0.00 4.92
221 222 3.840890 TTATGTTTTGATCACCGTGCC 57.159 42.857 0.00 0.00 0.00 5.01
251 252 8.566260 TGCCAAGGATAATTTTGTTCAAAATTG 58.434 29.630 30.05 20.27 41.09 2.32
269 270 6.070481 TGTCACTAACAACTATATGCCAAGGA 60.070 38.462 0.00 0.00 34.03 3.36
270 271 6.112734 TGTCACTAACAACTATATGCCAAGG 58.887 40.000 0.00 0.00 34.03 3.61
281 282 8.732746 AACTGATTTACTTGTCACTAACAACT 57.267 30.769 0.00 0.00 42.95 3.16
283 284 9.826574 ACTAACTGATTTACTTGTCACTAACAA 57.173 29.630 0.00 0.00 45.60 2.83
284 285 9.472361 GACTAACTGATTTACTTGTCACTAACA 57.528 33.333 0.00 0.00 35.59 2.41
285 286 8.923683 GGACTAACTGATTTACTTGTCACTAAC 58.076 37.037 0.00 0.00 0.00 2.34
286 287 8.644216 TGGACTAACTGATTTACTTGTCACTAA 58.356 33.333 0.00 0.00 0.00 2.24
287 288 8.185506 TGGACTAACTGATTTACTTGTCACTA 57.814 34.615 0.00 0.00 0.00 2.74
288 289 7.062749 TGGACTAACTGATTTACTTGTCACT 57.937 36.000 0.00 0.00 0.00 3.41
289 290 6.369065 CCTGGACTAACTGATTTACTTGTCAC 59.631 42.308 0.00 0.00 0.00 3.67
290 291 6.269077 TCCTGGACTAACTGATTTACTTGTCA 59.731 38.462 0.00 0.00 0.00 3.58
291 292 6.698380 TCCTGGACTAACTGATTTACTTGTC 58.302 40.000 0.00 0.00 0.00 3.18
292 293 6.681729 TCCTGGACTAACTGATTTACTTGT 57.318 37.500 0.00 0.00 0.00 3.16
293 294 7.979444 TTTCCTGGACTAACTGATTTACTTG 57.021 36.000 0.00 0.00 0.00 3.16
298 299 9.454859 CTCTTTATTTCCTGGACTAACTGATTT 57.545 33.333 0.00 0.00 0.00 2.17
299 300 8.826765 TCTCTTTATTTCCTGGACTAACTGATT 58.173 33.333 0.00 0.00 0.00 2.57
300 301 8.380742 TCTCTTTATTTCCTGGACTAACTGAT 57.619 34.615 0.00 0.00 0.00 2.90
301 302 7.792364 TCTCTTTATTTCCTGGACTAACTGA 57.208 36.000 0.00 0.00 0.00 3.41
302 303 9.535878 GTATCTCTTTATTTCCTGGACTAACTG 57.464 37.037 0.00 0.00 0.00 3.16
303 304 8.414778 CGTATCTCTTTATTTCCTGGACTAACT 58.585 37.037 0.00 0.00 0.00 2.24
304 305 7.169476 GCGTATCTCTTTATTTCCTGGACTAAC 59.831 40.741 0.00 0.00 0.00 2.34
305 306 7.147794 TGCGTATCTCTTTATTTCCTGGACTAA 60.148 37.037 0.00 0.00 0.00 2.24
306 307 6.322969 TGCGTATCTCTTTATTTCCTGGACTA 59.677 38.462 0.00 0.00 0.00 2.59
307 308 5.128827 TGCGTATCTCTTTATTTCCTGGACT 59.871 40.000 0.00 0.00 0.00 3.85
308 309 5.234543 GTGCGTATCTCTTTATTTCCTGGAC 59.765 44.000 0.00 0.00 0.00 4.02
309 310 5.105106 TGTGCGTATCTCTTTATTTCCTGGA 60.105 40.000 0.00 0.00 0.00 3.86
310 311 5.116180 TGTGCGTATCTCTTTATTTCCTGG 58.884 41.667 0.00 0.00 0.00 4.45
311 312 6.662414 TTGTGCGTATCTCTTTATTTCCTG 57.338 37.500 0.00 0.00 0.00 3.86
312 313 7.047891 TGATTGTGCGTATCTCTTTATTTCCT 58.952 34.615 0.00 0.00 0.00 3.36
313 314 7.246674 TGATTGTGCGTATCTCTTTATTTCC 57.753 36.000 0.00 0.00 0.00 3.13
314 315 8.604035 TCTTGATTGTGCGTATCTCTTTATTTC 58.396 33.333 0.00 0.00 0.00 2.17
315 316 8.492673 TCTTGATTGTGCGTATCTCTTTATTT 57.507 30.769 0.00 0.00 0.00 1.40
316 317 7.981789 TCTCTTGATTGTGCGTATCTCTTTATT 59.018 33.333 0.00 0.00 0.00 1.40
317 318 7.492524 TCTCTTGATTGTGCGTATCTCTTTAT 58.507 34.615 0.00 0.00 0.00 1.40
318 319 6.863275 TCTCTTGATTGTGCGTATCTCTTTA 58.137 36.000 0.00 0.00 0.00 1.85
319 320 5.724328 TCTCTTGATTGTGCGTATCTCTTT 58.276 37.500 0.00 0.00 0.00 2.52
320 321 5.330455 TCTCTTGATTGTGCGTATCTCTT 57.670 39.130 0.00 0.00 0.00 2.85
321 322 4.991153 TCTCTTGATTGTGCGTATCTCT 57.009 40.909 0.00 0.00 0.00 3.10
343 344 9.408648 TCTTGTCTCAAAAAGAAGGAAAGTATT 57.591 29.630 0.00 0.00 35.21 1.89
356 357 7.445096 TGCATGTATCTCTTCTTGTCTCAAAAA 59.555 33.333 0.00 0.00 0.00 1.94
409 411 9.392259 CCTAGTTTCGTTTTTATTTATCCCTCT 57.608 33.333 0.00 0.00 0.00 3.69
410 412 9.387257 TCCTAGTTTCGTTTTTATTTATCCCTC 57.613 33.333 0.00 0.00 0.00 4.30
411 413 9.743581 TTCCTAGTTTCGTTTTTATTTATCCCT 57.256 29.630 0.00 0.00 0.00 4.20
412 414 9.999009 CTTCCTAGTTTCGTTTTTATTTATCCC 57.001 33.333 0.00 0.00 0.00 3.85
423 425 8.897872 TGTTCTAATTCTTCCTAGTTTCGTTT 57.102 30.769 0.00 0.00 0.00 3.60
431 433 7.768120 AGATGCAGTTGTTCTAATTCTTCCTAG 59.232 37.037 0.00 0.00 0.00 3.02
499 501 6.662755 TCCTCCGTTCCTTTGTAGTAGTATA 58.337 40.000 0.00 0.00 0.00 1.47
501 503 4.922206 TCCTCCGTTCCTTTGTAGTAGTA 58.078 43.478 0.00 0.00 0.00 1.82
502 504 3.771216 TCCTCCGTTCCTTTGTAGTAGT 58.229 45.455 0.00 0.00 0.00 2.73
503 505 4.796038 TTCCTCCGTTCCTTTGTAGTAG 57.204 45.455 0.00 0.00 0.00 2.57
504 506 4.834496 TCTTTCCTCCGTTCCTTTGTAGTA 59.166 41.667 0.00 0.00 0.00 1.82
505 507 3.644738 TCTTTCCTCCGTTCCTTTGTAGT 59.355 43.478 0.00 0.00 0.00 2.73
506 508 4.246458 CTCTTTCCTCCGTTCCTTTGTAG 58.754 47.826 0.00 0.00 0.00 2.74
507 509 3.644738 ACTCTTTCCTCCGTTCCTTTGTA 59.355 43.478 0.00 0.00 0.00 2.41
513 515 3.447944 AGACATACTCTTTCCTCCGTTCC 59.552 47.826 0.00 0.00 0.00 3.62
517 519 9.765795 ATAAATTTAGACATACTCTTTCCTCCG 57.234 33.333 3.94 0.00 0.00 4.63
579 581 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
580 582 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
581 583 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
582 584 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
583 585 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
584 586 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
585 587 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
586 588 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
587 589 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
588 590 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
589 591 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
590 592 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
591 593 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
592 594 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
593 595 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
594 596 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
595 597 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
596 598 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
597 599 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
598 600 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
599 601 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
600 602 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
601 603 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
602 604 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
603 605 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
604 606 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
605 607 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
606 608 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
607 609 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
608 610 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
609 611 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
610 612 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
611 613 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
612 614 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
613 615 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
615 617 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
655 657 9.529325 CGTGGAAATCTAGTGATATACTTTTCA 57.471 33.333 0.00 0.00 40.89 2.69
656 658 8.488764 GCGTGGAAATCTAGTGATATACTTTTC 58.511 37.037 0.00 0.00 40.89 2.29
657 659 7.169308 CGCGTGGAAATCTAGTGATATACTTTT 59.831 37.037 0.00 0.00 40.89 2.27
658 660 6.641314 CGCGTGGAAATCTAGTGATATACTTT 59.359 38.462 0.00 0.00 40.89 2.66
659 661 6.150318 CGCGTGGAAATCTAGTGATATACTT 58.850 40.000 0.00 0.00 40.89 2.24
660 662 5.335740 CCGCGTGGAAATCTAGTGATATACT 60.336 44.000 10.20 0.00 39.66 2.12
661 663 4.857588 CCGCGTGGAAATCTAGTGATATAC 59.142 45.833 10.20 0.00 37.49 1.47
662 664 4.763279 TCCGCGTGGAAATCTAGTGATATA 59.237 41.667 17.09 0.00 42.85 0.86
663 665 3.572682 TCCGCGTGGAAATCTAGTGATAT 59.427 43.478 17.09 0.00 42.85 1.63
664 666 2.953648 TCCGCGTGGAAATCTAGTGATA 59.046 45.455 17.09 0.00 42.85 2.15
665 667 1.754803 TCCGCGTGGAAATCTAGTGAT 59.245 47.619 17.09 0.00 42.85 3.06
666 668 1.179152 TCCGCGTGGAAATCTAGTGA 58.821 50.000 17.09 0.00 42.85 3.41
667 669 3.733236 TCCGCGTGGAAATCTAGTG 57.267 52.632 17.09 0.00 42.85 2.74
677 679 4.868450 TTTAGAAATTACATCCGCGTGG 57.132 40.909 9.28 9.28 0.00 4.94
735 737 8.897752 ACGTAGTTCTAGGTCGATAATTTAACT 58.102 33.333 0.00 0.00 37.78 2.24
736 738 8.951969 CACGTAGTTCTAGGTCGATAATTTAAC 58.048 37.037 0.00 0.00 41.61 2.01
737 739 8.892723 TCACGTAGTTCTAGGTCGATAATTTAA 58.107 33.333 0.00 0.00 41.61 1.52
738 740 8.437360 TCACGTAGTTCTAGGTCGATAATTTA 57.563 34.615 0.00 0.00 41.61 1.40
739 741 7.325660 TCACGTAGTTCTAGGTCGATAATTT 57.674 36.000 0.00 0.00 41.61 1.82
740 742 6.932356 TCACGTAGTTCTAGGTCGATAATT 57.068 37.500 0.00 0.00 41.61 1.40
741 743 6.932356 TTCACGTAGTTCTAGGTCGATAAT 57.068 37.500 0.00 0.00 41.61 1.28
742 744 6.539826 TCATTCACGTAGTTCTAGGTCGATAA 59.460 38.462 0.00 0.00 41.61 1.75
743 745 6.018425 GTCATTCACGTAGTTCTAGGTCGATA 60.018 42.308 0.00 0.00 41.61 2.92
744 746 4.880120 TCATTCACGTAGTTCTAGGTCGAT 59.120 41.667 0.00 0.00 41.61 3.59
745 747 4.093998 GTCATTCACGTAGTTCTAGGTCGA 59.906 45.833 0.00 0.00 41.61 4.20
746 748 4.094590 AGTCATTCACGTAGTTCTAGGTCG 59.905 45.833 0.00 0.00 41.61 4.79
747 749 5.564048 AGTCATTCACGTAGTTCTAGGTC 57.436 43.478 0.00 0.00 41.61 3.85
748 750 5.979288 AAGTCATTCACGTAGTTCTAGGT 57.021 39.130 0.00 0.20 41.61 3.08
749 751 8.618677 TGTATAAGTCATTCACGTAGTTCTAGG 58.381 37.037 0.00 0.00 41.61 3.02
750 752 9.435802 GTGTATAAGTCATTCACGTAGTTCTAG 57.564 37.037 0.00 0.00 41.61 2.43
751 753 8.400947 GGTGTATAAGTCATTCACGTAGTTCTA 58.599 37.037 0.00 0.00 41.61 2.10
752 754 7.256286 GGTGTATAAGTCATTCACGTAGTTCT 58.744 38.462 0.00 0.00 41.61 3.01
753 755 6.195983 CGGTGTATAAGTCATTCACGTAGTTC 59.804 42.308 0.00 0.00 41.61 3.01
754 756 6.032094 CGGTGTATAAGTCATTCACGTAGTT 58.968 40.000 0.00 0.00 41.61 2.24
756 758 4.974275 CCGGTGTATAAGTCATTCACGTAG 59.026 45.833 0.00 0.00 36.16 3.51
757 759 4.202040 CCCGGTGTATAAGTCATTCACGTA 60.202 45.833 0.00 0.00 36.16 3.57
758 760 3.429822 CCCGGTGTATAAGTCATTCACGT 60.430 47.826 0.00 0.00 36.16 4.49
759 761 3.120792 CCCGGTGTATAAGTCATTCACG 58.879 50.000 0.00 0.00 36.16 4.35
760 762 4.395959 TCCCGGTGTATAAGTCATTCAC 57.604 45.455 0.00 0.00 34.95 3.18
761 763 4.202315 CCATCCCGGTGTATAAGTCATTCA 60.202 45.833 0.00 0.00 0.00 2.57
762 764 4.039973 TCCATCCCGGTGTATAAGTCATTC 59.960 45.833 0.00 0.00 35.57 2.67
763 765 3.971305 TCCATCCCGGTGTATAAGTCATT 59.029 43.478 0.00 0.00 35.57 2.57
764 766 3.578716 CTCCATCCCGGTGTATAAGTCAT 59.421 47.826 0.00 0.00 35.57 3.06
765 767 2.963101 CTCCATCCCGGTGTATAAGTCA 59.037 50.000 0.00 0.00 35.57 3.41
766 768 2.299297 CCTCCATCCCGGTGTATAAGTC 59.701 54.545 0.00 0.00 35.57 3.01
767 769 2.326428 CCTCCATCCCGGTGTATAAGT 58.674 52.381 0.00 0.00 35.57 2.24
768 770 2.326428 ACCTCCATCCCGGTGTATAAG 58.674 52.381 0.00 0.00 35.57 1.73
769 771 2.482414 ACCTCCATCCCGGTGTATAA 57.518 50.000 0.00 0.00 35.57 0.98
770 772 2.448194 ACTACCTCCATCCCGGTGTATA 59.552 50.000 0.00 0.00 34.76 1.47
771 773 1.219724 ACTACCTCCATCCCGGTGTAT 59.780 52.381 0.00 0.00 34.76 2.29
772 774 0.632835 ACTACCTCCATCCCGGTGTA 59.367 55.000 0.00 0.00 34.76 2.90
773 775 0.632835 TACTACCTCCATCCCGGTGT 59.367 55.000 0.00 0.00 34.76 4.16
774 776 1.329256 CTACTACCTCCATCCCGGTG 58.671 60.000 0.00 0.00 34.76 4.94
775 777 0.932211 ACTACTACCTCCATCCCGGT 59.068 55.000 0.00 0.00 37.31 5.28
776 778 2.083628 AACTACTACCTCCATCCCGG 57.916 55.000 0.00 0.00 0.00 5.73
777 779 5.603170 TTTTAACTACTACCTCCATCCCG 57.397 43.478 0.00 0.00 0.00 5.14
778 780 6.531923 GGATTTTAACTACTACCTCCATCCC 58.468 44.000 0.00 0.00 0.00 3.85
779 781 6.041296 TCGGATTTTAACTACTACCTCCATCC 59.959 42.308 0.00 0.00 0.00 3.51
780 782 7.047460 TCGGATTTTAACTACTACCTCCATC 57.953 40.000 0.00 0.00 0.00 3.51
781 783 7.613551 ATCGGATTTTAACTACTACCTCCAT 57.386 36.000 0.00 0.00 0.00 3.41
782 784 8.716674 ATATCGGATTTTAACTACTACCTCCA 57.283 34.615 0.00 0.00 0.00 3.86
796 798 6.877322 CGGTACCCAGATTTATATCGGATTTT 59.123 38.462 6.25 0.00 35.85 1.82
911 913 3.015145 CCTGGGGTGGGTAGTGGG 61.015 72.222 0.00 0.00 0.00 4.61
961 963 1.608717 CTGCTAACCCCTGCGTCTCT 61.609 60.000 0.00 0.00 0.00 3.10
965 967 3.717294 CCCTGCTAACCCCTGCGT 61.717 66.667 0.00 0.00 0.00 5.24
1756 1815 1.333931 TGCGACAGATCCATCGAGTAC 59.666 52.381 17.83 3.35 40.86 2.73
1827 1886 3.504906 CACACGACTACTAGAACTTCCCA 59.495 47.826 0.00 0.00 0.00 4.37
1838 2041 3.225104 TGGGTAGAAACACACGACTACT 58.775 45.455 0.00 0.00 32.77 2.57
1912 2275 5.242393 ACAATAGCACAGCAAGAATTCAAGT 59.758 36.000 8.44 0.00 0.00 3.16
1953 2923 4.171754 CAGAAAAAGCCTGCAATAGAAGC 58.828 43.478 0.00 0.00 0.00 3.86
1984 2954 2.248280 TTGAGGCGTGCAGAAACTAA 57.752 45.000 0.00 0.00 0.00 2.24
1989 2959 0.881118 GGATTTTGAGGCGTGCAGAA 59.119 50.000 0.00 0.00 0.00 3.02
1990 2960 0.250684 TGGATTTTGAGGCGTGCAGA 60.251 50.000 0.00 0.00 0.00 4.26
1991 2961 0.813184 ATGGATTTTGAGGCGTGCAG 59.187 50.000 0.00 0.00 0.00 4.41
1992 2962 2.121291 TATGGATTTTGAGGCGTGCA 57.879 45.000 0.00 0.00 0.00 4.57
1993 2963 2.880890 AGATATGGATTTTGAGGCGTGC 59.119 45.455 0.00 0.00 0.00 5.34
2032 3002 8.817092 AATAAAATCGGGATGGAGTTTTCTAA 57.183 30.769 0.00 0.00 35.94 2.10
2132 3176 1.247567 CACCAACAAGGGCAGGTTAG 58.752 55.000 0.00 0.00 43.89 2.34
2146 3190 4.081309 GTGCCCTAGACACTAATACACCAA 60.081 45.833 8.21 0.00 35.12 3.67
2148 3192 3.449737 TGTGCCCTAGACACTAATACACC 59.550 47.826 14.50 0.00 38.86 4.16
2149 3193 4.730949 TGTGCCCTAGACACTAATACAC 57.269 45.455 14.50 0.00 38.86 2.90
2150 3194 5.950544 AATGTGCCCTAGACACTAATACA 57.049 39.130 14.50 0.00 38.86 2.29
2151 3195 7.723324 TCTAAATGTGCCCTAGACACTAATAC 58.277 38.462 14.50 0.00 38.86 1.89
2154 3198 6.156256 ACATCTAAATGTGCCCTAGACACTAA 59.844 38.462 14.50 0.00 44.51 2.24
2157 3201 4.770795 ACATCTAAATGTGCCCTAGACAC 58.229 43.478 8.47 8.47 44.51 3.67
2169 3213 8.146479 TGCAATAACTAGAGCACATCTAAATG 57.854 34.615 0.00 0.00 40.06 2.32
2179 3223 7.986889 TCATTTAGATGTGCAATAACTAGAGCA 59.013 33.333 0.00 0.00 34.77 4.26
2180 3224 8.370493 TCATTTAGATGTGCAATAACTAGAGC 57.630 34.615 0.00 0.00 34.77 4.09
2181 3225 9.539825 ACTCATTTAGATGTGCAATAACTAGAG 57.460 33.333 0.00 0.00 34.77 2.43
2182 3226 9.317936 CACTCATTTAGATGTGCAATAACTAGA 57.682 33.333 0.00 0.00 34.77 2.43
2183 3227 9.317936 TCACTCATTTAGATGTGCAATAACTAG 57.682 33.333 0.00 0.00 34.77 2.57
2184 3228 9.665719 TTCACTCATTTAGATGTGCAATAACTA 57.334 29.630 0.00 0.00 34.77 2.24
2185 3229 8.565896 TTCACTCATTTAGATGTGCAATAACT 57.434 30.769 0.00 0.00 34.77 2.24
2190 3234 7.451501 TTGATTCACTCATTTAGATGTGCAA 57.548 32.000 0.00 0.00 34.77 4.08
2191 3235 6.403964 GCTTGATTCACTCATTTAGATGTGCA 60.404 38.462 0.00 0.00 34.77 4.57
2192 3236 5.970023 GCTTGATTCACTCATTTAGATGTGC 59.030 40.000 0.00 0.00 34.77 4.57
2193 3237 7.080353 TGCTTGATTCACTCATTTAGATGTG 57.920 36.000 0.00 0.00 34.77 3.21
2198 3242 9.932699 CTCTTTATGCTTGATTCACTCATTTAG 57.067 33.333 5.48 4.66 32.72 1.85
2200 3244 8.571461 TCTCTTTATGCTTGATTCACTCATTT 57.429 30.769 5.48 0.00 32.72 2.32
2201 3245 8.045507 TCTCTCTTTATGCTTGATTCACTCATT 58.954 33.333 5.48 0.00 32.72 2.57
2203 3247 6.939622 TCTCTCTTTATGCTTGATTCACTCA 58.060 36.000 0.00 0.00 0.00 3.41
2206 3250 7.840342 TTCTCTCTCTTTATGCTTGATTCAC 57.160 36.000 0.00 0.00 0.00 3.18
2207 3251 8.853077 TTTTCTCTCTCTTTATGCTTGATTCA 57.147 30.769 0.00 0.00 0.00 2.57
2233 3321 8.877779 CATTCGTGTGAATATTTTCTCTCTCTT 58.122 33.333 0.00 0.00 42.94 2.85
2236 3324 7.819415 TGACATTCGTGTGAATATTTTCTCTCT 59.181 33.333 0.00 0.00 42.94 3.10
2237 3325 7.963981 TGACATTCGTGTGAATATTTTCTCTC 58.036 34.615 0.00 0.00 42.94 3.20
2238 3326 7.905604 TGACATTCGTGTGAATATTTTCTCT 57.094 32.000 0.00 0.00 42.94 3.10
2241 3329 8.673626 ACATTGACATTCGTGTGAATATTTTC 57.326 30.769 0.00 0.00 42.94 2.29
2245 3333 8.716646 TCTTACATTGACATTCGTGTGAATAT 57.283 30.769 0.00 0.00 42.94 1.28
2247 3335 7.334171 TGATCTTACATTGACATTCGTGTGAAT 59.666 33.333 0.00 0.00 45.70 2.57
2251 3339 7.334171 TCATTGATCTTACATTGACATTCGTGT 59.666 33.333 0.00 0.00 0.00 4.49
2252 3340 7.637519 GTCATTGATCTTACATTGACATTCGTG 59.362 37.037 14.48 0.00 43.96 4.35
2254 3342 7.687445 TGTCATTGATCTTACATTGACATTCG 58.313 34.615 16.71 0.00 46.43 3.34
2268 3356 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
2269 3357 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
2270 3358 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
2271 3359 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
2272 3360 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
2274 3362 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
2275 3363 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
2276 3364 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
2281 3369 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
2282 3370 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
2283 3371 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
2284 3372 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
2293 3381 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2294 3382 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2315 3403 8.237267 ACTAATACAGTTTTGCTAAAGCACATC 58.763 33.333 3.66 0.00 42.69 3.06
2316 3404 8.110860 ACTAATACAGTTTTGCTAAAGCACAT 57.889 30.769 3.66 0.00 42.69 3.21
2318 3406 9.887406 TTTACTAATACAGTTTTGCTAAAGCAC 57.113 29.630 3.66 0.00 44.05 4.40
2319 3407 9.887406 GTTTACTAATACAGTTTTGCTAAAGCA 57.113 29.630 0.00 0.00 43.30 3.91
2320 3408 9.887406 TGTTTACTAATACAGTTTTGCTAAAGC 57.113 29.630 0.00 0.00 38.80 3.51
2331 3419 9.886132 CCCAATCTAAGTGTTTACTAATACAGT 57.114 33.333 0.00 0.00 41.62 3.55
2333 3421 8.322828 TGCCCAATCTAAGTGTTTACTAATACA 58.677 33.333 0.00 0.00 35.69 2.29
2334 3422 8.726870 TGCCCAATCTAAGTGTTTACTAATAC 57.273 34.615 0.00 0.00 35.69 1.89
2336 3424 8.823220 AATGCCCAATCTAAGTGTTTACTAAT 57.177 30.769 0.00 0.00 35.69 1.73
2337 3425 9.391006 CTAATGCCCAATCTAAGTGTTTACTAA 57.609 33.333 0.00 0.00 35.69 2.24
2338 3426 8.764558 TCTAATGCCCAATCTAAGTGTTTACTA 58.235 33.333 0.00 0.00 35.69 1.82
2339 3427 7.630082 TCTAATGCCCAATCTAAGTGTTTACT 58.370 34.615 0.00 0.00 39.32 2.24
2340 3428 7.859325 TCTAATGCCCAATCTAAGTGTTTAC 57.141 36.000 0.00 0.00 0.00 2.01
2341 3429 8.871629 TTTCTAATGCCCAATCTAAGTGTTTA 57.128 30.769 0.00 0.00 0.00 2.01
2342 3430 7.775053 TTTCTAATGCCCAATCTAAGTGTTT 57.225 32.000 0.00 0.00 0.00 2.83
2343 3431 7.775053 TTTTCTAATGCCCAATCTAAGTGTT 57.225 32.000 0.00 0.00 0.00 3.32
2345 3433 7.999679 TGATTTTCTAATGCCCAATCTAAGTG 58.000 34.615 0.00 0.00 0.00 3.16
2370 3458 3.632145 AGCGAAAACAAATGTTGGTCTCT 59.368 39.130 0.00 0.00 38.44 3.10
2378 3466 4.582701 TCCATTGAGCGAAAACAAATGT 57.417 36.364 0.00 0.00 0.00 2.71
2383 3674 5.895636 ATGTATTCCATTGAGCGAAAACA 57.104 34.783 0.00 0.00 0.00 2.83
2550 4814 7.879677 TCATTCAATGAAGAACTCAGCTTTCTA 59.120 33.333 0.00 0.00 37.52 2.10
2580 4846 6.560253 ACTAATCATCACAAGTTCACAACC 57.440 37.500 0.00 0.00 0.00 3.77
2582 4848 7.717436 TGGTAACTAATCATCACAAGTTCACAA 59.283 33.333 0.00 0.00 34.23 3.33
2583 4849 7.220740 TGGTAACTAATCATCACAAGTTCACA 58.779 34.615 0.00 0.00 34.23 3.58
2584 4850 7.667043 TGGTAACTAATCATCACAAGTTCAC 57.333 36.000 0.00 0.00 34.23 3.18
2585 4851 8.862325 AATGGTAACTAATCATCACAAGTTCA 57.138 30.769 0.00 0.00 34.23 3.18
2586 4852 9.167311 AGAATGGTAACTAATCATCACAAGTTC 57.833 33.333 0.00 0.00 34.23 3.01
2587 4853 9.167311 GAGAATGGTAACTAATCATCACAAGTT 57.833 33.333 0.00 0.00 36.26 2.66
2588 4854 8.321353 TGAGAATGGTAACTAATCATCACAAGT 58.679 33.333 0.00 0.00 37.61 3.16
2589 4855 8.722480 TGAGAATGGTAACTAATCATCACAAG 57.278 34.615 0.00 0.00 37.61 3.16
2991 5426 2.840651 AGGGTTAGTATCTTGTGCTGCT 59.159 45.455 0.00 0.00 0.00 4.24
2994 5429 4.532521 ACTTGAGGGTTAGTATCTTGTGCT 59.467 41.667 0.00 0.00 0.00 4.40
2997 5432 4.286032 TGCACTTGAGGGTTAGTATCTTGT 59.714 41.667 0.00 0.00 0.00 3.16
3231 5666 2.693591 CCTATTCTGGCGTTCAGGACTA 59.306 50.000 7.79 0.00 43.53 2.59
3445 5880 5.640147 AGAGGATTGGTTATGGTGTTTTGA 58.360 37.500 0.00 0.00 0.00 2.69
3581 6016 0.679960 GGGAACACCAGTATGCCCAC 60.680 60.000 0.00 0.00 39.85 4.61
3604 6039 1.303561 GCCAGGACTGCAATGGTGA 60.304 57.895 8.27 0.00 36.43 4.02
3702 6137 1.922447 TGGTTGTCATGAGCCCCTATT 59.078 47.619 0.00 0.00 0.00 1.73
3865 6300 0.174389 GAGTCAGAAGATGGCTGCGA 59.826 55.000 0.00 0.00 46.38 5.10
3972 6407 1.525718 TAGCACCTCCGTAACGCACA 61.526 55.000 0.00 0.00 0.00 4.57
3975 6410 1.202382 AGATTAGCACCTCCGTAACGC 60.202 52.381 0.00 0.00 0.00 4.84
4094 6529 4.083324 TCACGCATTTCCAGAGATTTTCAC 60.083 41.667 0.00 0.00 0.00 3.18
4197 6632 3.526931 TGGGAGTTCTTTATCGCAGAG 57.473 47.619 0.00 0.00 43.63 3.35
4215 6650 2.025981 TGTGGGATCTCACCTTGATTGG 60.026 50.000 22.96 0.00 36.87 3.16
4329 6769 5.516339 ACGTTTCAAGCATGTTTTCTTCAAG 59.484 36.000 0.00 0.00 0.00 3.02
4365 6805 8.227791 GCGATATACAAAACTTGAAGAACTTCA 58.772 33.333 12.40 12.40 46.72 3.02
4377 6817 7.542534 TTTATCGGTTGCGATATACAAAACT 57.457 32.000 0.00 0.00 31.91 2.66
4443 6883 1.945819 GCCACTGTCACGTTCCATGAT 60.946 52.381 0.00 0.00 0.00 2.45
4457 6897 0.538584 TGGAGCAGTATCAGCCACTG 59.461 55.000 0.00 0.00 45.08 3.66
4515 6955 7.226441 TCTCAAATTGTCCATCCGATATGATT 58.774 34.615 0.00 0.00 0.00 2.57
4516 6956 6.772605 TCTCAAATTGTCCATCCGATATGAT 58.227 36.000 0.00 0.00 0.00 2.45
4520 6960 5.759763 CACATCTCAAATTGTCCATCCGATA 59.240 40.000 0.00 0.00 0.00 2.92
4523 6963 3.065786 CCACATCTCAAATTGTCCATCCG 59.934 47.826 0.00 0.00 0.00 4.18
4540 6980 3.396611 AGGGTTTGTACCAACTACCACAT 59.603 43.478 9.46 0.00 46.96 3.21
4542 6982 3.405831 GAGGGTTTGTACCAACTACCAC 58.594 50.000 9.46 0.00 46.96 4.16
4563 7003 2.279069 ACCAGACCACAGCCTCTCG 61.279 63.158 0.00 0.00 0.00 4.04
4566 7006 1.294780 CTCACCAGACCACAGCCTC 59.705 63.158 0.00 0.00 0.00 4.70
4618 7075 5.417266 TCATTCTGAAACGGAAATATTGGCA 59.583 36.000 0.00 0.00 32.18 4.92
4619 7076 5.890334 TCATTCTGAAACGGAAATATTGGC 58.110 37.500 0.00 0.00 32.18 4.52
4623 7080 8.230486 GCGATAATCATTCTGAAACGGAAATAT 58.770 33.333 0.00 0.00 32.18 1.28
4624 7081 7.568679 CGCGATAATCATTCTGAAACGGAAATA 60.569 37.037 0.00 0.00 32.18 1.40
4627 7084 4.026062 CGCGATAATCATTCTGAAACGGAA 60.026 41.667 0.00 0.00 33.01 4.30
4628 7085 3.489416 CGCGATAATCATTCTGAAACGGA 59.511 43.478 0.00 0.00 0.00 4.69
4629 7086 3.362986 CCGCGATAATCATTCTGAAACGG 60.363 47.826 8.23 0.00 0.00 4.44
4630 7087 3.362986 CCCGCGATAATCATTCTGAAACG 60.363 47.826 8.23 0.00 0.00 3.60
4631 7088 3.560068 ACCCGCGATAATCATTCTGAAAC 59.440 43.478 8.23 0.00 0.00 2.78
4632 7089 3.804036 ACCCGCGATAATCATTCTGAAA 58.196 40.909 8.23 0.00 0.00 2.69
4633 7090 3.469008 ACCCGCGATAATCATTCTGAA 57.531 42.857 8.23 0.00 0.00 3.02
4634 7091 3.572682 ACTACCCGCGATAATCATTCTGA 59.427 43.478 8.23 0.00 0.00 3.27
4635 7092 3.914312 ACTACCCGCGATAATCATTCTG 58.086 45.455 8.23 0.00 0.00 3.02
4636 7093 4.602340 AACTACCCGCGATAATCATTCT 57.398 40.909 8.23 0.00 0.00 2.40
4637 7094 6.774354 TTAAACTACCCGCGATAATCATTC 57.226 37.500 8.23 0.00 0.00 2.67
4638 7095 6.764560 AGTTTAAACTACCCGCGATAATCATT 59.235 34.615 19.26 0.00 37.52 2.57
4639 7096 6.285990 AGTTTAAACTACCCGCGATAATCAT 58.714 36.000 19.26 0.00 37.52 2.45
4640 7097 5.663456 AGTTTAAACTACCCGCGATAATCA 58.337 37.500 19.26 0.00 37.52 2.57
4641 7098 6.416514 CAAGTTTAAACTACCCGCGATAATC 58.583 40.000 20.83 0.00 38.57 1.75
4642 7099 5.295045 CCAAGTTTAAACTACCCGCGATAAT 59.705 40.000 20.83 0.00 38.57 1.28
4643 7100 4.630940 CCAAGTTTAAACTACCCGCGATAA 59.369 41.667 20.83 0.00 38.57 1.75
4644 7101 4.183101 CCAAGTTTAAACTACCCGCGATA 58.817 43.478 20.83 0.00 38.57 2.92
4645 7102 3.004862 CCAAGTTTAAACTACCCGCGAT 58.995 45.455 20.83 0.20 38.57 4.58
4691 7148 8.596781 ACTGACAGAAGTACCATTCTAGTAAT 57.403 34.615 10.08 0.00 37.43 1.89
4692 7149 8.418597 AACTGACAGAAGTACCATTCTAGTAA 57.581 34.615 10.08 0.00 37.43 2.24
4739 7200 3.199442 TGAACCTTCTGTATCCCTCCA 57.801 47.619 0.00 0.00 0.00 3.86
4787 7248 6.429385 CAGATCATAACCTCTAAAATCAGGCC 59.571 42.308 0.00 0.00 32.32 5.19
4830 7291 3.906720 TCAACTCCTGGTATGCCTTAC 57.093 47.619 0.16 0.00 35.27 2.34
4840 7301 2.393271 AGCTCGAAATCAACTCCTGG 57.607 50.000 0.00 0.00 0.00 4.45
4894 7355 1.576421 GCTTCGTTGAGCACCTTGG 59.424 57.895 3.90 0.00 42.25 3.61
4902 7363 1.662629 CTATGCTGGTGCTTCGTTGAG 59.337 52.381 0.00 0.00 40.48 3.02
4962 7423 3.181453 TGTTAATCGAACCACCCACAAGA 60.181 43.478 0.00 0.00 37.22 3.02
4964 7425 3.210232 TGTTAATCGAACCACCCACAA 57.790 42.857 0.00 0.00 37.22 3.33
5029 7490 1.283029 AGACTATTGCCATGTGCCAGT 59.717 47.619 4.07 4.88 40.16 4.00
5122 7583 2.909965 GTTTGGCAAGCACCGGGA 60.910 61.111 6.32 0.00 0.00 5.14
5306 7767 2.928801 TCACCACTAGCAGAAGCAAA 57.071 45.000 0.00 0.00 45.49 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.