Multiple sequence alignment - TraesCS2A01G149900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G149900 chr2A 100.000 3073 0 0 1 3073 97550468 97547396 0.000000e+00 5675.0
1 TraesCS2A01G149900 chr2A 98.010 2111 32 2 1 2111 97317344 97315244 0.000000e+00 3657.0
2 TraesCS2A01G149900 chr2A 87.491 1359 128 22 936 2272 97308656 97307318 0.000000e+00 1530.0
3 TraesCS2A01G149900 chr2A 90.444 293 18 4 2135 2426 97315066 97314783 8.040000e-101 377.0
4 TraesCS2A01G149900 chr2A 82.456 342 18 16 86 406 97311471 97311151 8.450000e-66 261.0
5 TraesCS2A01G149900 chr2A 90.909 99 8 1 2419 2517 97314197 97314100 6.910000e-27 132.0
6 TraesCS2A01G149900 chr2B 90.534 2546 153 36 1 2517 150202329 150199843 0.000000e+00 3286.0
7 TraesCS2A01G149900 chr2B 91.235 1449 87 13 936 2371 150142098 150140677 0.000000e+00 1936.0
8 TraesCS2A01G149900 chr2B 88.353 1245 121 9 940 2169 150119186 150117951 0.000000e+00 1474.0
9 TraesCS2A01G149900 chr2B 85.766 1377 155 25 867 2226 150339411 150338059 0.000000e+00 1419.0
10 TraesCS2A01G149900 chr2B 85.244 1064 127 14 867 1917 150387776 150386730 0.000000e+00 1068.0
11 TraesCS2A01G149900 chr2B 80.706 850 96 42 1 813 150340241 150339423 1.580000e-167 599.0
12 TraesCS2A01G149900 chr2B 92.733 344 18 5 375 713 150145006 150144665 9.900000e-135 490.0
13 TraesCS2A01G149900 chr2B 80.576 417 46 16 4 406 150120515 150120120 3.880000e-74 289.0
14 TraesCS2A01G149900 chr2B 78.826 477 62 26 260 704 150388680 150388211 5.020000e-73 285.0
15 TraesCS2A01G149900 chr2B 93.976 166 7 1 701 866 150142378 150142216 6.580000e-62 248.0
16 TraesCS2A01G149900 chr2B 84.848 198 13 4 196 393 150146124 150145944 1.880000e-42 183.0
17 TraesCS2A01G149900 chr2D 91.408 2444 136 28 1 2425 98674604 98672216 0.000000e+00 3282.0
18 TraesCS2A01G149900 chr2D 90.517 1508 98 16 886 2371 98668434 98666950 0.000000e+00 1951.0
19 TraesCS2A01G149900 chr2D 85.637 1476 170 22 768 2226 98708964 98707514 0.000000e+00 1513.0
20 TraesCS2A01G149900 chr2D 88.311 1249 117 12 936 2169 98659732 98658498 0.000000e+00 1471.0
21 TraesCS2A01G149900 chr2D 90.192 520 30 5 196 713 98669712 98669212 0.000000e+00 658.0
22 TraesCS2A01G149900 chr2D 81.931 725 63 36 1 704 98709816 98709139 4.480000e-153 551.0
23 TraesCS2A01G149900 chr2D 94.709 189 10 0 701 889 98668895 98668707 8.330000e-76 294.0
24 TraesCS2A01G149900 chr2D 86.164 159 11 6 712 863 98659910 98659756 8.820000e-36 161.0
25 TraesCS2A01G149900 chr2D 84.181 177 14 8 464 632 98661258 98661088 3.170000e-35 159.0
26 TraesCS2A01G149900 chr1D 81.812 1435 177 45 833 2244 195992066 195993439 0.000000e+00 1127.0
27 TraesCS2A01G149900 chr3B 88.889 90 9 1 2282 2371 383727767 383727679 3.240000e-20 110.0
28 TraesCS2A01G149900 chr5A 77.059 170 33 6 2908 3073 706821292 706821125 3.260000e-15 93.5
29 TraesCS2A01G149900 chr7A 76.923 156 31 5 2513 2667 662735130 662735281 1.960000e-12 84.2
30 TraesCS2A01G149900 chr1A 87.302 63 8 0 2606 2668 573932972 573933034 4.250000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G149900 chr2A 97547396 97550468 3072 True 5675.00 5675 100.000000 1 3073 1 chr2A.!!$R1 3072
1 TraesCS2A01G149900 chr2A 97307318 97317344 10026 True 1191.40 3657 89.862000 1 2517 5 chr2A.!!$R2 2516
2 TraesCS2A01G149900 chr2B 150199843 150202329 2486 True 3286.00 3286 90.534000 1 2517 1 chr2B.!!$R1 2516
3 TraesCS2A01G149900 chr2B 150338059 150340241 2182 True 1009.00 1419 83.236000 1 2226 2 chr2B.!!$R4 2225
4 TraesCS2A01G149900 chr2B 150117951 150120515 2564 True 881.50 1474 84.464500 4 2169 2 chr2B.!!$R2 2165
5 TraesCS2A01G149900 chr2B 150140677 150146124 5447 True 714.25 1936 90.698000 196 2371 4 chr2B.!!$R3 2175
6 TraesCS2A01G149900 chr2B 150386730 150388680 1950 True 676.50 1068 82.035000 260 1917 2 chr2B.!!$R5 1657
7 TraesCS2A01G149900 chr2D 98666950 98674604 7654 True 1546.25 3282 91.706500 1 2425 4 chr2D.!!$R2 2424
8 TraesCS2A01G149900 chr2D 98707514 98709816 2302 True 1032.00 1513 83.784000 1 2226 2 chr2D.!!$R3 2225
9 TraesCS2A01G149900 chr2D 98658498 98661258 2760 True 597.00 1471 86.218667 464 2169 3 chr2D.!!$R1 1705
10 TraesCS2A01G149900 chr1D 195992066 195993439 1373 False 1127.00 1127 81.812000 833 2244 1 chr1D.!!$F1 1411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 54 1.255667 GGGTAGGTCAACTCTCGGCA 61.256 60.000 0.0 0.0 0.0 5.69 F
934 5347 1.338020 CAGTTCACAACCCAAAGCTCC 59.662 52.381 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 6009 1.323271 CCAGCGGAAGGAGCTACAGA 61.323 60.0 0.00 0.0 44.06 3.41 R
2610 8806 0.105964 TGAGCCGTGTACTGCTGTTT 59.894 50.0 5.66 0.0 36.55 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 1.255667 GGGTAGGTCAACTCTCGGCA 61.256 60.000 0.00 0.00 0.00 5.69
185 213 1.371881 GGTCGCCGCTAGCTGTATC 60.372 63.158 13.93 0.53 40.39 2.24
203 231 7.046033 GCTGTATCACTAGCTTTAAACCCTAA 58.954 38.462 0.00 0.00 36.99 2.69
934 5347 1.338020 CAGTTCACAACCCAAAGCTCC 59.662 52.381 0.00 0.00 0.00 4.70
1556 6001 1.489649 AGCTGAGAGTGGCATAGCAAT 59.510 47.619 11.28 0.00 36.87 3.56
1564 6009 3.525221 GCATAGCAATTGCCCCGT 58.475 55.556 26.45 10.90 43.38 5.28
1578 6023 1.677637 CCCCGTCTGTAGCTCCTTCC 61.678 65.000 0.00 0.00 0.00 3.46
2103 6565 4.506271 GCTCCATGATTCCAGTGGATGTAT 60.506 45.833 14.00 3.20 40.96 2.29
2153 6779 2.815777 CGTAATCGCTACCTACGTACG 58.184 52.381 15.01 15.01 34.99 3.67
2154 6780 2.471370 CGTAATCGCTACCTACGTACGA 59.529 50.000 24.41 7.55 37.55 3.43
2221 6855 2.289444 TGCTTGGTTACTCCTTCCGAAG 60.289 50.000 0.68 0.68 37.07 3.79
2265 6905 9.738832 GTTGTCTAAAAACAAAGCTAATGGTTA 57.261 29.630 3.38 0.00 40.62 2.85
2296 6937 6.620877 TGCCTCTAATTTCCTTCTCTGTTA 57.379 37.500 0.00 0.00 0.00 2.41
2393 7034 4.275936 AGAGGACAAAGTGCACAATTACAC 59.724 41.667 21.04 3.44 37.05 2.90
2394 7035 3.951037 AGGACAAAGTGCACAATTACACA 59.049 39.130 21.04 0.00 39.30 3.72
2404 7045 3.568007 GCACAATTACACAGACCCAAAGA 59.432 43.478 0.00 0.00 0.00 2.52
2405 7046 4.556699 GCACAATTACACAGACCCAAAGAC 60.557 45.833 0.00 0.00 0.00 3.01
2426 7067 0.249398 AAAGCACTAGTAGCCCGTGG 59.751 55.000 11.98 0.00 0.00 4.94
2427 7068 0.613853 AAGCACTAGTAGCCCGTGGA 60.614 55.000 11.98 0.00 0.00 4.02
2428 7069 1.141234 GCACTAGTAGCCCGTGGAC 59.859 63.158 0.00 0.00 0.00 4.02
2485 7719 5.304686 TGCAAAGATCTATATCCGGGTTT 57.695 39.130 0.00 0.00 31.98 3.27
2510 7744 1.204146 ACATACGGCCTTGATCCAGT 58.796 50.000 0.00 0.00 0.00 4.00
2513 7747 2.871096 TACGGCCTTGATCCAGTTTT 57.129 45.000 0.00 0.00 0.00 2.43
2536 8732 1.723288 TTTGGCGGGGAAAAAGGAAT 58.277 45.000 0.00 0.00 0.00 3.01
2537 8733 1.723288 TTGGCGGGGAAAAAGGAATT 58.277 45.000 0.00 0.00 0.00 2.17
2538 8734 1.723288 TGGCGGGGAAAAAGGAATTT 58.277 45.000 0.00 0.00 0.00 1.82
2540 8736 3.445987 TGGCGGGGAAAAAGGAATTTAT 58.554 40.909 0.00 0.00 0.00 1.40
2541 8737 3.841255 TGGCGGGGAAAAAGGAATTTATT 59.159 39.130 0.00 0.00 0.00 1.40
2571 8767 7.631007 AGGTAATAGGGCTATAATTAACTGGC 58.369 38.462 0.00 0.00 33.07 4.85
2572 8768 7.238933 AGGTAATAGGGCTATAATTAACTGGCA 59.761 37.037 9.98 0.00 33.07 4.92
2573 8769 7.886446 GGTAATAGGGCTATAATTAACTGGCAA 59.114 37.037 9.98 0.00 0.00 4.52
2574 8770 8.947115 GTAATAGGGCTATAATTAACTGGCAAG 58.053 37.037 9.98 0.00 0.00 4.01
2575 8771 5.646692 AGGGCTATAATTAACTGGCAAGA 57.353 39.130 0.00 0.00 0.00 3.02
2576 8772 5.625150 AGGGCTATAATTAACTGGCAAGAG 58.375 41.667 0.00 0.00 0.00 2.85
2577 8773 5.132816 AGGGCTATAATTAACTGGCAAGAGT 59.867 40.000 0.00 0.00 0.00 3.24
2579 8775 6.321435 GGGCTATAATTAACTGGCAAGAGTTT 59.679 38.462 0.00 0.00 37.38 2.66
2580 8776 7.418408 GGCTATAATTAACTGGCAAGAGTTTC 58.582 38.462 0.00 0.00 37.38 2.78
2581 8777 7.283354 GGCTATAATTAACTGGCAAGAGTTTCT 59.717 37.037 0.00 0.00 37.38 2.52
2582 8778 8.338986 GCTATAATTAACTGGCAAGAGTTTCTC 58.661 37.037 0.00 0.00 37.38 2.87
2584 8780 6.959639 AATTAACTGGCAAGAGTTTCTCAA 57.040 33.333 0.00 0.00 37.38 3.02
2585 8781 7.530426 AATTAACTGGCAAGAGTTTCTCAAT 57.470 32.000 0.00 0.00 37.38 2.57
2586 8782 8.635765 AATTAACTGGCAAGAGTTTCTCAATA 57.364 30.769 0.00 0.00 37.38 1.90
2590 8786 5.471456 ACTGGCAAGAGTTTCTCAATACAAG 59.529 40.000 0.00 0.00 32.06 3.16
2591 8787 5.620206 TGGCAAGAGTTTCTCAATACAAGA 58.380 37.500 0.00 0.00 32.06 3.02
2592 8788 6.240894 TGGCAAGAGTTTCTCAATACAAGAT 58.759 36.000 0.00 0.00 32.06 2.40
2593 8789 6.149973 TGGCAAGAGTTTCTCAATACAAGATG 59.850 38.462 0.00 0.00 32.06 2.90
2594 8790 6.372659 GGCAAGAGTTTCTCAATACAAGATGA 59.627 38.462 0.00 0.00 32.06 2.92
2595 8791 7.094634 GGCAAGAGTTTCTCAATACAAGATGAA 60.095 37.037 0.00 0.00 32.06 2.57
2597 8793 7.913674 AGAGTTTCTCAATACAAGATGAACC 57.086 36.000 0.00 0.00 32.06 3.62
2599 8795 8.160106 AGAGTTTCTCAATACAAGATGAACCTT 58.840 33.333 0.00 0.00 32.06 3.50
2601 8797 9.136323 AGTTTCTCAATACAAGATGAACCTTTT 57.864 29.630 0.00 0.00 0.00 2.27
2602 8798 9.750125 GTTTCTCAATACAAGATGAACCTTTTT 57.250 29.630 0.00 0.00 0.00 1.94
2622 8818 5.584253 TTTTTAAGCCAAACAGCAGTACA 57.416 34.783 0.00 0.00 34.23 2.90
2623 8819 4.561735 TTTAAGCCAAACAGCAGTACAC 57.438 40.909 0.00 0.00 34.23 2.90
2624 8820 0.944386 AAGCCAAACAGCAGTACACG 59.056 50.000 0.00 0.00 34.23 4.49
2625 8821 0.884704 AGCCAAACAGCAGTACACGG 60.885 55.000 0.00 0.00 34.23 4.94
2626 8822 1.574428 CCAAACAGCAGTACACGGC 59.426 57.895 0.00 0.00 37.32 5.68
2630 8826 0.319900 AACAGCAGTACACGGCTCAG 60.320 55.000 3.93 0.00 45.29 3.35
2631 8827 1.290324 CAGCAGTACACGGCTCAGT 59.710 57.895 3.93 0.00 45.29 3.41
2633 8829 1.135139 CAGCAGTACACGGCTCAGTAT 59.865 52.381 3.93 0.00 45.29 2.12
2634 8830 1.135139 AGCAGTACACGGCTCAGTATG 59.865 52.381 0.89 0.00 43.74 2.39
2636 8832 1.476891 CAGTACACGGCTCAGTATGGT 59.523 52.381 0.00 0.00 36.16 3.55
2637 8833 2.094182 CAGTACACGGCTCAGTATGGTT 60.094 50.000 0.00 0.00 36.16 3.67
2638 8834 2.094182 AGTACACGGCTCAGTATGGTTG 60.094 50.000 0.00 0.00 36.16 3.77
2640 8836 1.897133 ACACGGCTCAGTATGGTTGTA 59.103 47.619 0.00 0.00 36.16 2.41
2642 8838 3.055385 ACACGGCTCAGTATGGTTGTAAT 60.055 43.478 0.00 0.00 36.16 1.89
2645 8841 5.234329 CACGGCTCAGTATGGTTGTAATTAG 59.766 44.000 0.00 0.00 36.16 1.73
2646 8842 4.211374 CGGCTCAGTATGGTTGTAATTAGC 59.789 45.833 0.00 0.00 36.16 3.09
2647 8843 4.515567 GGCTCAGTATGGTTGTAATTAGCC 59.484 45.833 0.00 0.00 39.03 3.93
2648 8844 5.123227 GCTCAGTATGGTTGTAATTAGCCA 58.877 41.667 5.99 5.99 36.16 4.75
2649 8845 5.237344 GCTCAGTATGGTTGTAATTAGCCAG 59.763 44.000 8.66 0.00 34.30 4.85
2650 8846 6.553953 TCAGTATGGTTGTAATTAGCCAGA 57.446 37.500 8.66 2.91 34.30 3.86
2652 8848 6.070481 TCAGTATGGTTGTAATTAGCCAGACA 60.070 38.462 20.80 2.77 43.09 3.41
2654 8850 7.283127 CAGTATGGTTGTAATTAGCCAGACAAT 59.717 37.037 20.80 7.33 43.09 2.71
2656 8852 5.815581 TGGTTGTAATTAGCCAGACAATCT 58.184 37.500 2.43 0.00 34.64 2.40
2657 8853 5.647658 TGGTTGTAATTAGCCAGACAATCTG 59.352 40.000 0.00 0.00 43.91 2.90
2658 8854 5.449177 GGTTGTAATTAGCCAGACAATCTGC 60.449 44.000 0.02 0.00 42.98 4.26
2659 8855 5.102953 TGTAATTAGCCAGACAATCTGCT 57.897 39.130 0.02 4.59 42.98 4.24
2660 8856 6.233905 TGTAATTAGCCAGACAATCTGCTA 57.766 37.500 0.02 3.73 42.98 3.49
2663 8859 1.577736 AGCCAGACAATCTGCTACCT 58.422 50.000 0.02 0.00 42.98 3.08
2664 8860 1.912043 AGCCAGACAATCTGCTACCTT 59.088 47.619 0.02 0.00 42.98 3.50
2665 8861 3.107601 AGCCAGACAATCTGCTACCTTA 58.892 45.455 0.02 0.00 42.98 2.69
2666 8862 3.713764 AGCCAGACAATCTGCTACCTTAT 59.286 43.478 0.02 0.00 42.98 1.73
2667 8863 4.164988 AGCCAGACAATCTGCTACCTTATT 59.835 41.667 0.02 0.00 42.98 1.40
2669 8865 5.686124 GCCAGACAATCTGCTACCTTATTCT 60.686 44.000 0.02 0.00 42.98 2.40
2670 8866 6.463049 GCCAGACAATCTGCTACCTTATTCTA 60.463 42.308 0.02 0.00 42.98 2.10
2672 8868 7.987458 CCAGACAATCTGCTACCTTATTCTAAA 59.013 37.037 0.02 0.00 42.98 1.85
2673 8869 9.383519 CAGACAATCTGCTACCTTATTCTAAAA 57.616 33.333 0.00 0.00 37.72 1.52
2683 8879 9.198837 GCTACCTTATTCTAAAATCTAGTGAGC 57.801 37.037 0.00 0.00 0.00 4.26
2691 8887 9.620259 ATTCTAAAATCTAGTGAGCTTTTAGGG 57.380 33.333 15.62 0.56 44.36 3.53
2692 8888 8.375493 TCTAAAATCTAGTGAGCTTTTAGGGA 57.625 34.615 15.62 2.27 44.36 4.20
2693 8889 8.822805 TCTAAAATCTAGTGAGCTTTTAGGGAA 58.177 33.333 15.62 1.58 44.36 3.97
2694 8890 9.620259 CTAAAATCTAGTGAGCTTTTAGGGAAT 57.380 33.333 10.89 0.00 42.47 3.01
2698 8894 8.966069 ATCTAGTGAGCTTTTAGGGAATAAAC 57.034 34.615 0.00 0.00 33.04 2.01
2699 8895 8.147244 TCTAGTGAGCTTTTAGGGAATAAACT 57.853 34.615 0.00 0.00 33.04 2.66
2700 8896 8.258708 TCTAGTGAGCTTTTAGGGAATAAACTC 58.741 37.037 0.00 0.00 33.04 3.01
2701 8897 6.181190 AGTGAGCTTTTAGGGAATAAACTCC 58.819 40.000 0.00 0.00 33.04 3.85
2711 8907 3.189910 GGGAATAAACTCCCGTTCAACAC 59.810 47.826 0.00 0.00 45.81 3.32
2712 8908 3.816523 GGAATAAACTCCCGTTCAACACA 59.183 43.478 0.00 0.00 31.66 3.72
2713 8909 4.319984 GGAATAAACTCCCGTTCAACACAC 60.320 45.833 0.00 0.00 31.66 3.82
2714 8910 1.011333 AAACTCCCGTTCAACACACG 58.989 50.000 0.00 0.00 37.39 4.49
2716 8912 0.249322 ACTCCCGTTCAACACACGAG 60.249 55.000 0.00 0.00 40.20 4.18
2717 8913 0.944311 CTCCCGTTCAACACACGAGG 60.944 60.000 0.00 0.00 40.20 4.63
2719 8915 1.885388 CCGTTCAACACACGAGGCA 60.885 57.895 0.00 0.00 40.20 4.75
2720 8916 1.227999 CCGTTCAACACACGAGGCAT 61.228 55.000 0.00 0.00 40.20 4.40
2721 8917 1.424403 CGTTCAACACACGAGGCATA 58.576 50.000 0.00 0.00 40.20 3.14
2722 8918 1.999735 CGTTCAACACACGAGGCATAT 59.000 47.619 0.00 0.00 40.20 1.78
2723 8919 2.222796 CGTTCAACACACGAGGCATATG 60.223 50.000 0.00 0.00 40.20 1.78
2724 8920 1.368641 TCAACACACGAGGCATATGC 58.631 50.000 19.79 19.79 41.14 3.14
2725 8921 1.085893 CAACACACGAGGCATATGCA 58.914 50.000 28.07 0.00 44.36 3.96
2726 8922 1.672363 CAACACACGAGGCATATGCAT 59.328 47.619 28.07 22.70 44.36 3.96
2727 8923 2.871633 CAACACACGAGGCATATGCATA 59.128 45.455 28.07 9.27 44.36 3.14
2730 8926 2.733552 CACACGAGGCATATGCATACTC 59.266 50.000 28.07 22.17 44.36 2.59
2732 8928 1.067565 ACGAGGCATATGCATACTCCG 60.068 52.381 28.07 21.72 44.36 4.63
2733 8929 1.737029 CGAGGCATATGCATACTCCGG 60.737 57.143 28.07 10.51 44.36 5.14
2734 8930 1.276421 GAGGCATATGCATACTCCGGT 59.724 52.381 28.07 0.00 44.36 5.28
2735 8931 1.276421 AGGCATATGCATACTCCGGTC 59.724 52.381 28.07 7.52 44.36 4.79
2736 8932 1.676014 GGCATATGCATACTCCGGTCC 60.676 57.143 28.07 3.35 44.36 4.46
2737 8933 1.276421 GCATATGCATACTCCGGTCCT 59.724 52.381 22.84 0.00 41.59 3.85
2739 8935 2.375014 TATGCATACTCCGGTCCTGA 57.625 50.000 1.16 0.00 0.00 3.86
2742 8938 1.837439 TGCATACTCCGGTCCTGAAAT 59.163 47.619 0.00 0.00 0.00 2.17
2745 8941 4.058817 GCATACTCCGGTCCTGAAATAAG 58.941 47.826 0.00 0.00 0.00 1.73
2746 8942 4.202223 GCATACTCCGGTCCTGAAATAAGA 60.202 45.833 0.00 0.00 0.00 2.10
2747 8943 3.889520 ACTCCGGTCCTGAAATAAGAC 57.110 47.619 0.00 0.00 0.00 3.01
2750 8946 3.933332 CTCCGGTCCTGAAATAAGACAAC 59.067 47.826 0.00 0.00 31.99 3.32
2752 8948 3.684788 CCGGTCCTGAAATAAGACAACAG 59.315 47.826 0.00 0.00 31.99 3.16
2754 8950 4.627467 CGGTCCTGAAATAAGACAACAGAG 59.373 45.833 0.00 0.00 31.99 3.35
2756 8952 5.872070 GGTCCTGAAATAAGACAACAGAGAG 59.128 44.000 0.00 0.00 31.99 3.20
2758 8954 6.811170 GTCCTGAAATAAGACAACAGAGAGAG 59.189 42.308 0.00 0.00 0.00 3.20
2759 8955 6.071108 TCCTGAAATAAGACAACAGAGAGAGG 60.071 42.308 0.00 0.00 0.00 3.69
2760 8956 6.071108 CCTGAAATAAGACAACAGAGAGAGGA 60.071 42.308 0.00 0.00 0.00 3.71
2761 8957 6.929625 TGAAATAAGACAACAGAGAGAGGAG 58.070 40.000 0.00 0.00 0.00 3.69
2762 8958 5.930837 AATAAGACAACAGAGAGAGGAGG 57.069 43.478 0.00 0.00 0.00 4.30
2764 8960 3.756082 AGACAACAGAGAGAGGAGGAT 57.244 47.619 0.00 0.00 0.00 3.24
2765 8961 3.364549 AGACAACAGAGAGAGGAGGATG 58.635 50.000 0.00 0.00 0.00 3.51
2768 8964 0.754957 ACAGAGAGAGGAGGATGGCG 60.755 60.000 0.00 0.00 0.00 5.69
2769 8965 0.467106 CAGAGAGAGGAGGATGGCGA 60.467 60.000 0.00 0.00 0.00 5.54
2770 8966 0.467290 AGAGAGAGGAGGATGGCGAC 60.467 60.000 0.00 0.00 0.00 5.19
2771 8967 1.456705 AGAGAGGAGGATGGCGACC 60.457 63.158 0.00 0.00 0.00 4.79
2772 8968 2.835431 AGAGGAGGATGGCGACCG 60.835 66.667 0.00 0.00 0.00 4.79
2773 8969 4.593864 GAGGAGGATGGCGACCGC 62.594 72.222 5.75 5.75 41.06 5.68
2790 8986 3.120385 CGTGCTCTGGCGATTGCA 61.120 61.111 7.38 0.00 45.35 4.08
2791 8987 2.466982 CGTGCTCTGGCGATTGCAT 61.467 57.895 7.38 0.00 45.35 3.96
2792 8988 1.063649 GTGCTCTGGCGATTGCATG 59.936 57.895 7.38 0.00 45.35 4.06
2793 8989 2.116533 TGCTCTGGCGATTGCATGG 61.117 57.895 7.38 0.00 45.35 3.66
2794 8990 2.842256 GCTCTGGCGATTGCATGGG 61.842 63.158 7.38 0.00 45.35 4.00
2795 8991 2.829914 TCTGGCGATTGCATGGGC 60.830 61.111 7.38 0.00 45.35 5.36
2796 8992 4.260355 CTGGCGATTGCATGGGCG 62.260 66.667 7.38 0.00 45.35 6.13
2797 8993 4.792804 TGGCGATTGCATGGGCGA 62.793 61.111 7.38 0.00 45.35 5.54
2798 8994 4.256090 GGCGATTGCATGGGCGAC 62.256 66.667 7.38 0.00 45.35 5.19
2861 9970 4.154347 CCCTGCTCTGCTCCGGTC 62.154 72.222 0.00 0.00 0.00 4.79
2862 9971 3.073735 CCTGCTCTGCTCCGGTCT 61.074 66.667 0.00 0.00 0.00 3.85
2863 9972 2.493973 CTGCTCTGCTCCGGTCTC 59.506 66.667 0.00 0.00 0.00 3.36
2864 9973 3.071206 TGCTCTGCTCCGGTCTCC 61.071 66.667 0.00 0.00 0.00 3.71
2887 10274 3.866582 CCCTCCATCCCCGCTGAC 61.867 72.222 0.00 0.00 0.00 3.51
2911 10298 2.747855 CACCCCGCTTGAGCCTTC 60.748 66.667 0.00 0.00 37.91 3.46
2934 10321 4.828925 GCTCGCCTGCTCCTGTCC 62.829 72.222 0.00 0.00 0.00 4.02
2935 10322 4.154347 CTCGCCTGCTCCTGTCCC 62.154 72.222 0.00 0.00 0.00 4.46
2970 14818 1.520494 CTGGGCCGATCTCATCAATG 58.480 55.000 0.00 0.00 0.00 2.82
2979 14827 4.863707 TCATCAATGAGGAGCCGC 57.136 55.556 0.00 0.00 32.11 6.53
2981 14829 0.179065 TCATCAATGAGGAGCCGCTG 60.179 55.000 0.00 0.00 32.11 5.18
2982 14830 1.525535 ATCAATGAGGAGCCGCTGC 60.526 57.895 3.21 3.21 37.95 5.25
2983 14831 2.955022 ATCAATGAGGAGCCGCTGCC 62.955 60.000 8.47 4.61 38.69 4.85
2984 14832 4.496336 AATGAGGAGCCGCTGCCC 62.496 66.667 8.47 0.00 38.69 5.36
3021 14869 3.851128 GCCTCCTACCACCGCTCC 61.851 72.222 0.00 0.00 0.00 4.70
3022 14870 3.155167 CCTCCTACCACCGCTCCC 61.155 72.222 0.00 0.00 0.00 4.30
3023 14871 3.155167 CTCCTACCACCGCTCCCC 61.155 72.222 0.00 0.00 0.00 4.81
3071 14919 4.783621 GCTCAGCCCCGCATGTGA 62.784 66.667 8.11 0.00 0.00 3.58
3072 14920 2.513204 CTCAGCCCCGCATGTGAG 60.513 66.667 8.11 0.80 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 1.260561 GATCGTTATGGCGACGCAAAT 59.739 47.619 23.09 16.46 43.99 2.32
185 213 7.838884 ACTACTCTTAGGGTTTAAAGCTAGTG 58.161 38.462 16.40 13.36 0.00 2.74
203 231 9.368416 TGACCTAGATTAATTGCATACTACTCT 57.632 33.333 0.00 0.00 0.00 3.24
1428 5873 4.690719 TTGGCGTACCCACTGCCG 62.691 66.667 2.87 0.00 45.34 5.69
1556 6001 2.656069 GGAGCTACAGACGGGGCAA 61.656 63.158 0.00 0.00 0.00 4.52
1564 6009 1.323271 CCAGCGGAAGGAGCTACAGA 61.323 60.000 0.00 0.00 44.06 3.41
1712 6157 3.866379 TTGCCGCTGCCACTTCCAT 62.866 57.895 0.00 0.00 36.33 3.41
2103 6565 8.591114 AGTAGATTGCTCCACTAACTACTTAA 57.409 34.615 0.00 0.00 36.67 1.85
2133 6596 2.471370 TCGTACGTAGGTAGCGATTACG 59.529 50.000 16.05 9.77 44.10 3.18
2251 6887 5.807011 GCAACCAGAATAACCATTAGCTTTG 59.193 40.000 0.00 0.00 0.00 2.77
2265 6905 5.198602 AGGAAATTAGAGGCAACCAGAAT 57.801 39.130 0.00 0.00 37.17 2.40
2296 6937 1.077265 CAAACCAGCCACCATCCCT 59.923 57.895 0.00 0.00 0.00 4.20
2321 6962 1.589803 AAAACTGCCACGTACTCCAC 58.410 50.000 0.00 0.00 0.00 4.02
2370 7011 4.275936 GTGTAATTGTGCACTTTGTCCTCT 59.724 41.667 19.41 0.00 37.39 3.69
2371 7012 4.036262 TGTGTAATTGTGCACTTTGTCCTC 59.964 41.667 19.41 3.53 40.69 3.71
2372 7013 3.951037 TGTGTAATTGTGCACTTTGTCCT 59.049 39.130 19.41 0.00 40.69 3.85
2373 7014 4.036262 TCTGTGTAATTGTGCACTTTGTCC 59.964 41.667 19.41 2.38 40.69 4.02
2380 7021 2.226330 TGGGTCTGTGTAATTGTGCAC 58.774 47.619 10.75 10.75 40.49 4.57
2393 7034 1.338020 GTGCTTTGGTCTTTGGGTCTG 59.662 52.381 0.00 0.00 0.00 3.51
2394 7035 1.215423 AGTGCTTTGGTCTTTGGGTCT 59.785 47.619 0.00 0.00 0.00 3.85
2404 7045 0.249398 CGGGCTACTAGTGCTTTGGT 59.751 55.000 5.39 0.00 0.00 3.67
2405 7046 0.249398 ACGGGCTACTAGTGCTTTGG 59.751 55.000 5.39 1.91 0.00 3.28
2426 7067 5.362556 ACATGCATGCCTAAATTATCGTC 57.637 39.130 26.53 0.00 0.00 4.20
2427 7068 5.412594 CCTACATGCATGCCTAAATTATCGT 59.587 40.000 26.53 4.76 0.00 3.73
2428 7069 5.674569 GCCTACATGCATGCCTAAATTATCG 60.675 44.000 26.53 0.00 0.00 2.92
2492 7726 2.332063 AACTGGATCAAGGCCGTATG 57.668 50.000 1.23 0.00 0.00 2.39
2517 7751 1.723288 ATTCCTTTTTCCCCGCCAAA 58.277 45.000 0.00 0.00 0.00 3.28
2519 7753 1.723288 AAATTCCTTTTTCCCCGCCA 58.277 45.000 0.00 0.00 0.00 5.69
2545 8741 8.765517 GCCAGTTAATTATAGCCCTATTACCTA 58.234 37.037 0.00 0.00 0.00 3.08
2546 8742 7.238933 TGCCAGTTAATTATAGCCCTATTACCT 59.761 37.037 0.00 0.00 0.00 3.08
2547 8743 7.399634 TGCCAGTTAATTATAGCCCTATTACC 58.600 38.462 0.00 0.00 0.00 2.85
2549 8745 8.886369 TCTTGCCAGTTAATTATAGCCCTATTA 58.114 33.333 0.00 0.00 0.00 0.98
2550 8746 7.755618 TCTTGCCAGTTAATTATAGCCCTATT 58.244 34.615 0.00 0.00 0.00 1.73
2551 8747 7.017651 ACTCTTGCCAGTTAATTATAGCCCTAT 59.982 37.037 0.00 0.00 0.00 2.57
2552 8748 6.329197 ACTCTTGCCAGTTAATTATAGCCCTA 59.671 38.462 0.00 0.00 0.00 3.53
2554 8750 5.377478 ACTCTTGCCAGTTAATTATAGCCC 58.623 41.667 0.00 0.00 0.00 5.19
2555 8751 6.944234 AACTCTTGCCAGTTAATTATAGCC 57.056 37.500 0.00 0.00 34.70 3.93
2556 8752 8.214721 AGAAACTCTTGCCAGTTAATTATAGC 57.785 34.615 0.00 0.00 35.45 2.97
2557 8753 9.383519 TGAGAAACTCTTGCCAGTTAATTATAG 57.616 33.333 0.00 0.00 35.45 1.31
2558 8754 9.733556 TTGAGAAACTCTTGCCAGTTAATTATA 57.266 29.630 0.00 0.00 35.45 0.98
2559 8755 8.635765 TTGAGAAACTCTTGCCAGTTAATTAT 57.364 30.769 0.00 0.00 35.45 1.28
2560 8756 8.635765 ATTGAGAAACTCTTGCCAGTTAATTA 57.364 30.769 0.00 0.00 35.45 1.40
2566 8762 4.973168 TGTATTGAGAAACTCTTGCCAGT 58.027 39.130 0.00 0.00 0.00 4.00
2567 8763 5.702670 TCTTGTATTGAGAAACTCTTGCCAG 59.297 40.000 0.00 0.00 0.00 4.85
2568 8764 5.620206 TCTTGTATTGAGAAACTCTTGCCA 58.380 37.500 0.00 0.00 0.00 4.92
2569 8765 6.372659 TCATCTTGTATTGAGAAACTCTTGCC 59.627 38.462 0.00 0.00 0.00 4.52
2570 8766 7.369803 TCATCTTGTATTGAGAAACTCTTGC 57.630 36.000 0.00 0.00 0.00 4.01
2571 8767 8.233190 GGTTCATCTTGTATTGAGAAACTCTTG 58.767 37.037 0.00 0.00 0.00 3.02
2572 8768 8.160106 AGGTTCATCTTGTATTGAGAAACTCTT 58.840 33.333 0.00 0.00 27.48 2.85
2573 8769 7.684529 AGGTTCATCTTGTATTGAGAAACTCT 58.315 34.615 0.00 0.00 27.48 3.24
2574 8770 7.913674 AGGTTCATCTTGTATTGAGAAACTC 57.086 36.000 0.00 0.00 27.48 3.01
2575 8771 8.697507 AAAGGTTCATCTTGTATTGAGAAACT 57.302 30.769 0.00 0.00 34.75 2.66
2576 8772 9.750125 AAAAAGGTTCATCTTGTATTGAGAAAC 57.250 29.630 0.00 0.00 0.00 2.78
2601 8797 4.496673 CGTGTACTGCTGTTTGGCTTAAAA 60.497 41.667 0.09 0.00 0.00 1.52
2602 8798 3.002862 CGTGTACTGCTGTTTGGCTTAAA 59.997 43.478 0.09 0.00 0.00 1.52
2603 8799 2.546368 CGTGTACTGCTGTTTGGCTTAA 59.454 45.455 0.09 0.00 0.00 1.85
2604 8800 2.139917 CGTGTACTGCTGTTTGGCTTA 58.860 47.619 0.09 0.00 0.00 3.09
2606 8802 0.884704 CCGTGTACTGCTGTTTGGCT 60.885 55.000 0.09 0.00 0.00 4.75
2607 8803 1.574428 CCGTGTACTGCTGTTTGGC 59.426 57.895 0.09 0.00 0.00 4.52
2608 8804 0.884704 AGCCGTGTACTGCTGTTTGG 60.885 55.000 0.09 0.56 35.10 3.28
2609 8805 0.512952 GAGCCGTGTACTGCTGTTTG 59.487 55.000 5.66 0.00 36.55 2.93
2610 8806 0.105964 TGAGCCGTGTACTGCTGTTT 59.894 50.000 5.66 0.00 36.55 2.83
2612 8808 1.290324 CTGAGCCGTGTACTGCTGT 59.710 57.895 5.66 0.66 36.55 4.40
2613 8809 0.526211 TACTGAGCCGTGTACTGCTG 59.474 55.000 5.66 0.00 36.55 4.41
2615 8811 1.560923 CATACTGAGCCGTGTACTGC 58.439 55.000 0.00 0.00 0.00 4.40
2616 8812 1.476891 ACCATACTGAGCCGTGTACTG 59.523 52.381 0.00 0.00 0.00 2.74
2619 8815 1.897133 ACAACCATACTGAGCCGTGTA 59.103 47.619 0.00 0.00 0.00 2.90
2620 8816 0.685097 ACAACCATACTGAGCCGTGT 59.315 50.000 0.00 0.00 0.00 4.49
2621 8817 2.665649 TACAACCATACTGAGCCGTG 57.334 50.000 0.00 0.00 0.00 4.94
2622 8818 3.906720 ATTACAACCATACTGAGCCGT 57.093 42.857 0.00 0.00 0.00 5.68
2623 8819 4.211374 GCTAATTACAACCATACTGAGCCG 59.789 45.833 0.00 0.00 0.00 5.52
2624 8820 4.515567 GGCTAATTACAACCATACTGAGCC 59.484 45.833 0.00 0.00 39.03 4.70
2625 8821 5.123227 TGGCTAATTACAACCATACTGAGC 58.877 41.667 0.00 0.00 0.00 4.26
2626 8822 6.480320 GTCTGGCTAATTACAACCATACTGAG 59.520 42.308 0.00 0.00 0.00 3.35
2627 8823 6.070481 TGTCTGGCTAATTACAACCATACTGA 60.070 38.462 11.27 0.51 32.23 3.41
2630 8826 6.995511 TTGTCTGGCTAATTACAACCATAC 57.004 37.500 6.22 6.22 31.76 2.39
2631 8827 7.498900 CAGATTGTCTGGCTAATTACAACCATA 59.501 37.037 0.00 0.00 40.71 2.74
2633 8829 5.647658 CAGATTGTCTGGCTAATTACAACCA 59.352 40.000 0.00 0.00 40.71 3.67
2634 8830 5.449177 GCAGATTGTCTGGCTAATTACAACC 60.449 44.000 8.85 0.00 44.43 3.77
2636 8832 5.500234 AGCAGATTGTCTGGCTAATTACAA 58.500 37.500 8.85 0.00 44.43 2.41
2637 8833 5.102953 AGCAGATTGTCTGGCTAATTACA 57.897 39.130 8.85 0.00 44.43 2.41
2638 8834 5.467063 GGTAGCAGATTGTCTGGCTAATTAC 59.533 44.000 8.85 2.77 44.43 1.89
2640 8836 4.164988 AGGTAGCAGATTGTCTGGCTAATT 59.835 41.667 8.85 0.00 44.43 1.40
2642 8838 3.107601 AGGTAGCAGATTGTCTGGCTAA 58.892 45.455 8.85 0.00 44.43 3.09
2645 8841 2.409948 AAGGTAGCAGATTGTCTGGC 57.590 50.000 8.85 2.11 44.43 4.85
2646 8842 5.923204 AGAATAAGGTAGCAGATTGTCTGG 58.077 41.667 8.85 0.00 44.43 3.86
2647 8843 8.948631 TTTAGAATAAGGTAGCAGATTGTCTG 57.051 34.615 2.65 2.65 46.90 3.51
2657 8853 9.198837 GCTCACTAGATTTTAGAATAAGGTAGC 57.801 37.037 0.00 0.00 0.00 3.58
2672 8868 9.397280 GTTTATTCCCTAAAAGCTCACTAGATT 57.603 33.333 0.00 0.00 31.22 2.40
2673 8869 8.773216 AGTTTATTCCCTAAAAGCTCACTAGAT 58.227 33.333 0.00 0.00 31.22 1.98
2674 8870 8.147244 AGTTTATTCCCTAAAAGCTCACTAGA 57.853 34.615 0.00 0.00 31.22 2.43
2676 8872 7.336396 GGAGTTTATTCCCTAAAAGCTCACTA 58.664 38.462 0.00 0.00 31.22 2.74
2677 8873 6.181190 GGAGTTTATTCCCTAAAAGCTCACT 58.819 40.000 0.00 0.00 31.22 3.41
2678 8874 6.438259 GGAGTTTATTCCCTAAAAGCTCAC 57.562 41.667 0.00 0.00 31.22 3.51
2698 8894 0.944311 CCTCGTGTGTTGAACGGGAG 60.944 60.000 0.00 0.00 44.37 4.30
2699 8895 1.068417 CCTCGTGTGTTGAACGGGA 59.932 57.895 0.00 0.00 44.37 5.14
2700 8896 2.604174 GCCTCGTGTGTTGAACGGG 61.604 63.158 0.00 0.00 41.25 5.28
2701 8897 1.227999 ATGCCTCGTGTGTTGAACGG 61.228 55.000 0.00 0.00 41.34 4.44
2702 8898 1.424403 TATGCCTCGTGTGTTGAACG 58.576 50.000 0.00 0.00 42.36 3.95
2703 8899 2.476185 GCATATGCCTCGTGTGTTGAAC 60.476 50.000 17.26 0.00 34.31 3.18
2704 8900 1.737236 GCATATGCCTCGTGTGTTGAA 59.263 47.619 17.26 0.00 34.31 2.69
2705 8901 1.338579 TGCATATGCCTCGTGTGTTGA 60.339 47.619 24.54 0.00 41.18 3.18
2706 8902 1.085893 TGCATATGCCTCGTGTGTTG 58.914 50.000 24.54 0.00 41.18 3.33
2707 8903 2.042686 ATGCATATGCCTCGTGTGTT 57.957 45.000 24.54 0.00 41.18 3.32
2708 8904 2.103094 AGTATGCATATGCCTCGTGTGT 59.897 45.455 24.54 3.72 41.18 3.72
2709 8905 2.733552 GAGTATGCATATGCCTCGTGTG 59.266 50.000 24.54 0.00 41.18 3.82
2711 8907 2.341257 GGAGTATGCATATGCCTCGTG 58.659 52.381 24.54 0.00 41.18 4.35
2712 8908 1.067565 CGGAGTATGCATATGCCTCGT 60.068 52.381 24.54 10.64 41.18 4.18
2713 8909 1.633561 CGGAGTATGCATATGCCTCG 58.366 55.000 24.54 14.69 41.18 4.63
2714 8910 1.276421 ACCGGAGTATGCATATGCCTC 59.724 52.381 24.54 21.22 41.18 4.70
2716 8912 1.676014 GGACCGGAGTATGCATATGCC 60.676 57.143 24.54 12.88 41.18 4.40
2717 8913 1.276421 AGGACCGGAGTATGCATATGC 59.724 52.381 21.09 21.09 42.50 3.14
2719 8915 2.889512 TCAGGACCGGAGTATGCATAT 58.110 47.619 9.46 0.00 0.00 1.78
2720 8916 2.375014 TCAGGACCGGAGTATGCATA 57.625 50.000 9.46 1.16 0.00 3.14
2721 8917 1.496060 TTCAGGACCGGAGTATGCAT 58.504 50.000 9.46 3.79 0.00 3.96
2722 8918 1.271856 TTTCAGGACCGGAGTATGCA 58.728 50.000 9.46 0.00 0.00 3.96
2723 8919 2.622064 ATTTCAGGACCGGAGTATGC 57.378 50.000 9.46 0.00 0.00 3.14
2724 8920 5.163447 TGTCTTATTTCAGGACCGGAGTATG 60.163 44.000 9.46 0.80 0.00 2.39
2725 8921 4.960469 TGTCTTATTTCAGGACCGGAGTAT 59.040 41.667 9.46 0.00 0.00 2.12
2726 8922 4.346730 TGTCTTATTTCAGGACCGGAGTA 58.653 43.478 9.46 0.00 0.00 2.59
2727 8923 3.170717 TGTCTTATTTCAGGACCGGAGT 58.829 45.455 9.46 0.00 0.00 3.85
2730 8926 3.670625 TGTTGTCTTATTTCAGGACCGG 58.329 45.455 0.00 0.00 0.00 5.28
2732 8928 5.794894 TCTCTGTTGTCTTATTTCAGGACC 58.205 41.667 0.00 0.00 0.00 4.46
2733 8929 6.692486 TCTCTCTGTTGTCTTATTTCAGGAC 58.308 40.000 0.00 0.00 0.00 3.85
2734 8930 6.071108 CCTCTCTCTGTTGTCTTATTTCAGGA 60.071 42.308 0.00 0.00 0.00 3.86
2735 8931 6.071108 TCCTCTCTCTGTTGTCTTATTTCAGG 60.071 42.308 0.00 0.00 0.00 3.86
2736 8932 6.929625 TCCTCTCTCTGTTGTCTTATTTCAG 58.070 40.000 0.00 0.00 0.00 3.02
2737 8933 6.071108 CCTCCTCTCTCTGTTGTCTTATTTCA 60.071 42.308 0.00 0.00 0.00 2.69
2739 8935 6.019748 TCCTCCTCTCTCTGTTGTCTTATTT 58.980 40.000 0.00 0.00 0.00 1.40
2742 8938 4.659529 TCCTCCTCTCTCTGTTGTCTTA 57.340 45.455 0.00 0.00 0.00 2.10
2745 8941 2.430332 CCATCCTCCTCTCTCTGTTGTC 59.570 54.545 0.00 0.00 0.00 3.18
2746 8942 2.465813 CCATCCTCCTCTCTCTGTTGT 58.534 52.381 0.00 0.00 0.00 3.32
2747 8943 1.138661 GCCATCCTCCTCTCTCTGTTG 59.861 57.143 0.00 0.00 0.00 3.33
2750 8946 0.467106 TCGCCATCCTCCTCTCTCTG 60.467 60.000 0.00 0.00 0.00 3.35
2752 8948 1.460273 GGTCGCCATCCTCCTCTCTC 61.460 65.000 0.00 0.00 0.00 3.20
2754 8950 2.851071 CGGTCGCCATCCTCCTCTC 61.851 68.421 0.00 0.00 0.00 3.20
2756 8952 4.593864 GCGGTCGCCATCCTCCTC 62.594 72.222 3.73 0.00 34.56 3.71
2772 8968 4.527157 GCAATCGCCAGAGCACGC 62.527 66.667 0.00 0.00 39.83 5.34
2773 8969 2.466982 ATGCAATCGCCAGAGCACG 61.467 57.895 0.00 0.00 40.14 5.34
2774 8970 1.063649 CATGCAATCGCCAGAGCAC 59.936 57.895 0.00 0.00 40.14 4.40
2776 8972 2.719979 CCATGCAATCGCCAGAGC 59.280 61.111 0.00 0.00 37.32 4.09
2777 8973 2.842256 GCCCATGCAATCGCCAGAG 61.842 63.158 0.00 0.00 37.32 3.35
2778 8974 2.829914 GCCCATGCAATCGCCAGA 60.830 61.111 0.00 0.00 37.32 3.86
2780 8976 4.792804 TCGCCCATGCAATCGCCA 62.793 61.111 0.00 0.00 37.32 5.69
2781 8977 4.256090 GTCGCCCATGCAATCGCC 62.256 66.667 0.00 0.00 37.32 5.54
2782 8978 4.256090 GGTCGCCCATGCAATCGC 62.256 66.667 0.00 0.00 37.32 4.58
2783 8979 3.585990 GGGTCGCCCATGCAATCG 61.586 66.667 9.72 0.00 44.65 3.34
2784 8980 3.585990 CGGGTCGCCCATGCAATC 61.586 66.667 14.17 0.00 45.83 2.67
2844 9953 4.154347 GACCGGAGCAGAGCAGGG 62.154 72.222 9.46 0.00 0.00 4.45
2846 9955 2.493973 GAGACCGGAGCAGAGCAG 59.506 66.667 9.46 0.00 0.00 4.24
2847 9956 3.071206 GGAGACCGGAGCAGAGCA 61.071 66.667 9.46 0.00 0.00 4.26
2848 9957 4.200283 CGGAGACCGGAGCAGAGC 62.200 72.222 9.46 0.00 44.15 4.09
2870 9979 3.866582 GTCAGCGGGGATGGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
2871 9980 4.227134 CGTCAGCGGGGATGGAGG 62.227 72.222 0.00 0.00 0.00 4.30
2893 10280 4.351054 AAGGCTCAAGCGGGGTGG 62.351 66.667 0.00 0.00 43.26 4.61
2917 10304 4.828925 GGACAGGAGCAGGCGAGC 62.829 72.222 0.00 0.00 0.00 5.03
2947 14795 1.752358 GATGAGATCGGCCCAGCAGA 61.752 60.000 0.00 0.00 37.15 4.26
2949 14797 1.625417 TTGATGAGATCGGCCCAGCA 61.625 55.000 0.00 0.00 0.00 4.41
3003 14851 4.208686 GAGCGGTGGTAGGAGGCG 62.209 72.222 0.00 0.00 0.00 5.52
3006 14854 3.155167 GGGGAGCGGTGGTAGGAG 61.155 72.222 0.00 0.00 0.00 3.69
3009 14857 3.834799 GACGGGGAGCGGTGGTAG 61.835 72.222 0.00 0.00 0.00 3.18
3054 14902 4.783621 TCACATGCGGGGCTGAGC 62.784 66.667 0.00 0.00 0.00 4.26
3055 14903 2.513204 CTCACATGCGGGGCTGAG 60.513 66.667 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.