Multiple sequence alignment - TraesCS2A01G149700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G149700 chr2A 100.000 5165 0 0 1 5165 96252593 96247429 0.000000e+00 9539.0
1 TraesCS2A01G149700 chr2D 93.059 2579 134 23 2171 4726 98269021 98266465 0.000000e+00 3729.0
2 TraesCS2A01G149700 chr2D 95.662 1337 41 7 829 2162 98270431 98269109 0.000000e+00 2132.0
3 TraesCS2A01G149700 chr2D 86.842 380 21 11 4749 5113 98266471 98266106 1.040000e-106 398.0
4 TraesCS2A01G149700 chr2B 94.209 2435 110 19 2171 4587 149844739 149842318 0.000000e+00 3687.0
5 TraesCS2A01G149700 chr2B 95.299 1340 41 9 824 2162 149846129 149844811 0.000000e+00 2106.0
6 TraesCS2A01G149700 chr2B 87.796 844 71 17 1 813 741211034 741211876 0.000000e+00 959.0
7 TraesCS2A01G149700 chr2B 87.796 844 71 15 1 813 741240767 741241609 0.000000e+00 959.0
8 TraesCS2A01G149700 chr2B 87.620 832 72 16 1 802 318083896 318083066 0.000000e+00 937.0
9 TraesCS2A01G149700 chr2B 87.620 832 72 16 1 802 564815152 564815982 0.000000e+00 937.0
10 TraesCS2A01G149700 chr2B 87.322 844 75 16 1 813 615587047 615587889 0.000000e+00 937.0
11 TraesCS2A01G149700 chr2B 83.632 446 33 17 4532 4965 149842317 149841900 2.920000e-102 383.0
12 TraesCS2A01G149700 chr2B 79.427 384 59 14 4500 4869 400811606 400811229 2.390000e-63 254.0
13 TraesCS2A01G149700 chr2B 93.976 166 10 0 5000 5165 149841897 149841732 8.590000e-63 252.0
14 TraesCS2A01G149700 chr5B 88.228 841 67 17 1 809 589824413 589823573 0.000000e+00 976.0
15 TraesCS2A01G149700 chr5B 87.753 841 70 17 1 809 610024944 610024105 0.000000e+00 952.0
16 TraesCS2A01G149700 chr5B 87.589 846 71 16 1 814 50045381 50044538 0.000000e+00 950.0
17 TraesCS2A01G149700 chr1B 87.825 846 68 18 1 812 321011063 321011907 0.000000e+00 959.0
18 TraesCS2A01G149700 chr6B 87.574 845 72 18 1 814 131696103 131695261 0.000000e+00 948.0
19 TraesCS2A01G149700 chr6B 87.485 847 72 14 1 814 712549827 712550672 0.000000e+00 946.0
20 TraesCS2A01G149700 chr6B 90.847 590 50 4 1 588 644467776 644467189 0.000000e+00 787.0
21 TraesCS2A01G149700 chr3B 87.001 677 56 12 169 813 802100642 802099966 0.000000e+00 734.0
22 TraesCS2A01G149700 chr6A 85.657 495 42 12 353 818 603625325 603624831 1.290000e-135 494.0
23 TraesCS2A01G149700 chr4D 81.327 407 55 11 4498 4891 334964737 334964339 1.400000e-80 311.0
24 TraesCS2A01G149700 chr4D 88.785 214 16 5 2166 2372 503868580 503868368 6.640000e-64 255.0
25 TraesCS2A01G149700 chr4D 91.503 153 12 1 657 809 380144108 380144259 5.240000e-50 209.0
26 TraesCS2A01G149700 chr4B 79.703 404 64 14 4503 4893 252980562 252980164 5.090000e-70 276.0
27 TraesCS2A01G149700 chr4B 79.730 148 21 9 4331 4472 295700672 295700816 1.180000e-16 99.0
28 TraesCS2A01G149700 chr7B 88.889 216 18 6 2166 2375 326671128 326670913 1.430000e-65 261.0
29 TraesCS2A01G149700 chr7A 89.252 214 15 5 2166 2372 138739640 138739852 1.430000e-65 261.0
30 TraesCS2A01G149700 chr7A 78.218 404 68 16 4498 4888 689918596 689918992 1.860000e-59 241.0
31 TraesCS2A01G149700 chr7A 86.905 168 15 4 1997 2164 138739386 138739546 1.140000e-41 182.0
32 TraesCS2A01G149700 chr1A 78.607 402 71 12 4498 4888 48771541 48771938 8.590000e-63 252.0
33 TraesCS2A01G149700 chr1A 77.916 403 73 10 4498 4888 12146266 12145868 2.400000e-58 237.0
34 TraesCS2A01G149700 chr7D 88.318 214 17 6 2166 2372 424268193 424267981 3.090000e-62 250.0
35 TraesCS2A01G149700 chr5A 78.412 403 70 14 4498 4888 634040114 634040511 3.990000e-61 246.0
36 TraesCS2A01G149700 chr4A 78.164 403 69 14 4497 4886 593114948 593114552 6.680000e-59 239.0
37 TraesCS2A01G149700 chr3A 77.995 409 70 15 4492 4886 599890369 599890771 6.680000e-59 239.0
38 TraesCS2A01G149700 chr1D 92.500 40 2 1 4433 4471 338073811 338073772 7.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G149700 chr2A 96247429 96252593 5164 True 9539.000000 9539 100.000000 1 5165 1 chr2A.!!$R1 5164
1 TraesCS2A01G149700 chr2D 98266106 98270431 4325 True 2086.333333 3729 91.854333 829 5113 3 chr2D.!!$R1 4284
2 TraesCS2A01G149700 chr2B 149841732 149846129 4397 True 1607.000000 3687 91.779000 824 5165 4 chr2B.!!$R3 4341
3 TraesCS2A01G149700 chr2B 741211034 741211876 842 False 959.000000 959 87.796000 1 813 1 chr2B.!!$F3 812
4 TraesCS2A01G149700 chr2B 741240767 741241609 842 False 959.000000 959 87.796000 1 813 1 chr2B.!!$F4 812
5 TraesCS2A01G149700 chr2B 318083066 318083896 830 True 937.000000 937 87.620000 1 802 1 chr2B.!!$R1 801
6 TraesCS2A01G149700 chr2B 564815152 564815982 830 False 937.000000 937 87.620000 1 802 1 chr2B.!!$F1 801
7 TraesCS2A01G149700 chr2B 615587047 615587889 842 False 937.000000 937 87.322000 1 813 1 chr2B.!!$F2 812
8 TraesCS2A01G149700 chr5B 589823573 589824413 840 True 976.000000 976 88.228000 1 809 1 chr5B.!!$R2 808
9 TraesCS2A01G149700 chr5B 610024105 610024944 839 True 952.000000 952 87.753000 1 809 1 chr5B.!!$R3 808
10 TraesCS2A01G149700 chr5B 50044538 50045381 843 True 950.000000 950 87.589000 1 814 1 chr5B.!!$R1 813
11 TraesCS2A01G149700 chr1B 321011063 321011907 844 False 959.000000 959 87.825000 1 812 1 chr1B.!!$F1 811
12 TraesCS2A01G149700 chr6B 131695261 131696103 842 True 948.000000 948 87.574000 1 814 1 chr6B.!!$R1 813
13 TraesCS2A01G149700 chr6B 712549827 712550672 845 False 946.000000 946 87.485000 1 814 1 chr6B.!!$F1 813
14 TraesCS2A01G149700 chr6B 644467189 644467776 587 True 787.000000 787 90.847000 1 588 1 chr6B.!!$R2 587
15 TraesCS2A01G149700 chr3B 802099966 802100642 676 True 734.000000 734 87.001000 169 813 1 chr3B.!!$R1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 63 0.336737 TTTGGGGCCGGATTGGTTAT 59.663 50.000 5.05 0.0 41.21 1.89 F
1262 1298 1.399727 CCAATTTCGTTCGTGGCTGTC 60.400 52.381 0.00 0.0 0.00 3.51 F
1609 1645 0.037303 ACCTGGAGAATGTGCCACTG 59.963 55.000 0.00 0.0 0.00 3.66 F
2037 2074 2.614057 GTTGGCGCTAATAGATGTGCTT 59.386 45.455 10.14 0.0 39.38 3.91 F
2901 3029 2.620251 TGGTGCCATATCCTTTCTCG 57.380 50.000 0.00 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1639 0.175760 TATGAGAACTCGGCAGTGGC 59.824 55.0 6.62 6.62 40.13 5.01 R
2635 2760 0.039618 GGAGGGATGTTGCCTTTGGA 59.960 55.0 0.00 0.00 38.79 3.53 R
3385 3515 0.254747 TCCCCGCTTTTTCATCCGAT 59.745 50.0 0.00 0.00 0.00 4.18 R
3922 4058 0.682532 TCAGAGCGAGAGACCTGCAT 60.683 55.0 0.00 0.00 33.85 3.96 R
4511 4653 0.179089 CTCCATGGAGCTCAACCTCG 60.179 60.0 28.45 2.18 35.31 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 0.336737 TTTGGGGCCGGATTGGTTAT 59.663 50.000 5.05 0.00 41.21 1.89
72 74 7.612633 GGGCCGGATTGGTTATTTATCTTATTA 59.387 37.037 5.05 0.00 41.21 0.98
134 136 1.541588 GTTTTGGAGAGCATGACACCC 59.458 52.381 0.00 0.00 0.00 4.61
189 193 3.409026 AAAAATCTCCGCTCTGTGAGT 57.591 42.857 0.00 0.00 31.39 3.41
199 203 2.414481 CGCTCTGTGAGTTTCATTCAGG 59.586 50.000 0.00 0.00 31.39 3.86
208 212 6.377996 TGTGAGTTTCATTCAGGATTATTGGG 59.622 38.462 0.00 0.00 0.00 4.12
213 217 3.118075 TCATTCAGGATTATTGGGCGTCA 60.118 43.478 0.00 0.00 0.00 4.35
242 246 3.012518 CCTGTCATCCCAATGTGAAGAC 58.987 50.000 0.00 0.00 34.32 3.01
273 277 4.783227 AGCATCAAAGGTAAAGAGAGGGTA 59.217 41.667 0.00 0.00 0.00 3.69
328 332 2.356665 TTTTGTGACTTGGCAGGCTA 57.643 45.000 0.00 0.00 0.00 3.93
360 364 8.665685 ACGGAGTTCATTAAGATTAATGTTGAC 58.334 33.333 19.59 16.57 46.28 3.18
385 389 5.253330 CAAGTTATGTGGAGGCTTTAAGGA 58.747 41.667 0.00 0.00 0.00 3.36
386 390 5.717119 AGTTATGTGGAGGCTTTAAGGAT 57.283 39.130 0.00 0.00 0.00 3.24
435 439 7.989741 AGAAACCATACTGGAGAAGTTATCATG 59.010 37.037 0.00 0.00 40.96 3.07
437 441 7.200434 ACCATACTGGAGAAGTTATCATGTT 57.800 36.000 0.00 0.00 40.96 2.71
441 445 6.365970 ACTGGAGAAGTTATCATGTTGTCT 57.634 37.500 0.00 0.00 34.57 3.41
443 447 7.907389 ACTGGAGAAGTTATCATGTTGTCTTA 58.093 34.615 0.00 0.00 34.57 2.10
488 493 1.696832 GCGGATGAAGCGGAACTGAC 61.697 60.000 0.00 0.00 0.00 3.51
505 510 4.473520 CAGCGATCCTTGCGGGGT 62.474 66.667 0.00 0.00 37.44 4.95
549 554 5.047092 CCACAAGCCCATCATTTTAGAAACT 60.047 40.000 0.00 0.00 0.00 2.66
578 583 4.277476 TCTTTTGTGGCTTCTTTCCTTGA 58.723 39.130 0.00 0.00 0.00 3.02
588 593 6.071728 TGGCTTCTTTCCTTGAAAATGATCTC 60.072 38.462 0.00 0.00 30.84 2.75
589 594 6.071728 GGCTTCTTTCCTTGAAAATGATCTCA 60.072 38.462 0.00 0.00 30.84 3.27
597 618 7.823665 TCCTTGAAAATGATCTCAAGTTGATG 58.176 34.615 16.78 1.20 44.66 3.07
603 624 9.565213 GAAAATGATCTCAAGTTGATGTAAAGG 57.435 33.333 5.91 0.00 0.00 3.11
623 644 9.384764 GTAAAGGTAGAAGCATTGAGTTTATCT 57.615 33.333 0.00 0.00 0.00 1.98
624 645 7.856145 AAGGTAGAAGCATTGAGTTTATCTG 57.144 36.000 0.00 0.00 0.00 2.90
737 771 2.835764 TCTTAATAGTGTTCCGCCCTGT 59.164 45.455 0.00 0.00 0.00 4.00
899 933 2.588877 CGCCTAATCCCTGCGTGG 60.589 66.667 0.00 0.00 43.12 4.94
948 982 2.579684 GATCACACGACTCCAGCCCC 62.580 65.000 0.00 0.00 0.00 5.80
949 983 4.394712 CACACGACTCCAGCCCCC 62.395 72.222 0.00 0.00 0.00 5.40
950 984 4.954118 ACACGACTCCAGCCCCCA 62.954 66.667 0.00 0.00 0.00 4.96
951 985 3.636231 CACGACTCCAGCCCCCAA 61.636 66.667 0.00 0.00 0.00 4.12
1036 1070 2.604686 TCCACCGGAAGAGCTGCT 60.605 61.111 9.46 0.00 0.00 4.24
1185 1220 2.665165 CCTACAGTGAGCCAGATCTCT 58.335 52.381 0.00 0.00 34.29 3.10
1262 1298 1.399727 CCAATTTCGTTCGTGGCTGTC 60.400 52.381 0.00 0.00 0.00 3.51
1305 1341 1.570813 TACTGGCATCAGATTTCGCG 58.429 50.000 0.00 0.00 43.49 5.87
1514 1550 3.615351 TTGTTATCGAACACTGCCATCGA 60.615 43.478 0.00 0.00 45.29 3.59
1603 1639 5.065731 GCAATCTCTTTACCTGGAGAATGTG 59.934 44.000 0.00 0.00 39.97 3.21
1609 1645 0.037303 ACCTGGAGAATGTGCCACTG 59.963 55.000 0.00 0.00 0.00 3.66
1655 1691 4.530710 TTCTAGTAAATATGCCCGCGAT 57.469 40.909 8.23 0.00 0.00 4.58
1856 1892 4.263639 TGGCAGATCAAGGAGTTGAATTCT 60.264 41.667 7.05 0.00 45.88 2.40
2016 2053 4.332819 GTCTTCCGTCCCATTGTAAATCTG 59.667 45.833 0.00 0.00 0.00 2.90
2021 2058 3.427503 CGTCCCATTGTAAATCTGTTGGC 60.428 47.826 0.00 0.00 0.00 4.52
2037 2074 2.614057 GTTGGCGCTAATAGATGTGCTT 59.386 45.455 10.14 0.00 39.38 3.91
2044 2081 4.034048 CGCTAATAGATGTGCTTTTCGGTT 59.966 41.667 0.00 0.00 0.00 4.44
2081 2118 4.538891 AGGTACCAAAGTAGCCTTGGTAAT 59.461 41.667 15.94 5.73 46.12 1.89
2090 2127 6.673839 AGTAGCCTTGGTAATAAGAGGATC 57.326 41.667 0.00 0.00 0.00 3.36
2132 2169 4.737855 TGACCAGGTAGCTGAAGATAAC 57.262 45.455 23.31 6.71 0.00 1.89
2162 2199 9.301153 CAAATGGCATCAGGTAAAATTAAGTAC 57.699 33.333 0.00 0.00 0.00 2.73
2164 2201 7.624360 TGGCATCAGGTAAAATTAAGTACTG 57.376 36.000 0.00 0.00 0.00 2.74
2165 2202 7.172342 TGGCATCAGGTAAAATTAAGTACTGT 58.828 34.615 0.00 0.00 0.00 3.55
2166 2203 7.335924 TGGCATCAGGTAAAATTAAGTACTGTC 59.664 37.037 0.00 0.00 0.00 3.51
2167 2204 7.335924 GGCATCAGGTAAAATTAAGTACTGTCA 59.664 37.037 0.00 0.00 0.00 3.58
2168 2205 8.893727 GCATCAGGTAAAATTAAGTACTGTCAT 58.106 33.333 0.00 0.00 0.00 3.06
2334 2453 4.367450 GAAAATGGTGCACTGCAAACTTA 58.633 39.130 17.98 0.00 41.47 2.24
2342 2461 3.035942 GCACTGCAAACTTACACTTTCG 58.964 45.455 0.00 0.00 0.00 3.46
2368 2487 6.618287 TGTTGTTCACTCTTTCATAAGGTG 57.382 37.500 0.00 0.00 35.57 4.00
2377 2496 9.179909 TCACTCTTTCATAAGGTGTTTTTACAA 57.820 29.630 0.00 0.00 35.66 2.41
2382 2505 5.992729 TCATAAGGTGTTTTTACAAGTCGC 58.007 37.500 0.00 0.00 0.00 5.19
2385 2508 4.705337 AGGTGTTTTTACAAGTCGCAAA 57.295 36.364 0.00 0.00 0.00 3.68
2386 2509 4.417506 AGGTGTTTTTACAAGTCGCAAAC 58.582 39.130 0.00 0.00 0.00 2.93
2438 2561 3.520569 GGTTGTTGCACAAACTGTTGAT 58.479 40.909 9.82 0.00 42.31 2.57
2489 2612 4.335594 ACACAGCAAGTAAGTTTTCTGGAC 59.664 41.667 0.00 0.00 0.00 4.02
2534 2657 4.916983 TTTCAAGTGTGTTCTGAATGGG 57.083 40.909 0.00 0.00 0.00 4.00
2536 2659 4.163441 TCAAGTGTGTTCTGAATGGGAA 57.837 40.909 0.00 0.00 0.00 3.97
2539 2662 5.598005 TCAAGTGTGTTCTGAATGGGAATTT 59.402 36.000 0.00 0.00 0.00 1.82
2542 2665 3.577848 TGTGTTCTGAATGGGAATTTGGG 59.422 43.478 0.00 0.00 0.00 4.12
2596 2721 5.568620 AGTTCAACTGTGGTTCCTATTCT 57.431 39.130 0.00 0.00 32.73 2.40
2610 2735 6.887002 GGTTCCTATTCTGTTTCTCCATTTCT 59.113 38.462 0.00 0.00 0.00 2.52
2672 2800 5.189145 TCCCTCCAGTTCCTTTATACTCAAC 59.811 44.000 0.00 0.00 0.00 3.18
2673 2801 5.045869 CCCTCCAGTTCCTTTATACTCAACA 60.046 44.000 0.00 0.00 0.00 3.33
2746 2874 4.003648 CCAGAACCAGTGGATCTGTTTAC 58.996 47.826 34.66 6.35 46.69 2.01
2800 2928 4.986054 ACCCAAGTAGGATGTGTAAACA 57.014 40.909 0.00 0.00 41.22 2.83
2832 2960 9.052759 TGGTTAAAGAATCTTATTTATCGCTCC 57.947 33.333 0.00 0.00 0.00 4.70
2866 2994 7.575414 TGTGGTTTGAAGTTCAGCTTTTATA 57.425 32.000 5.56 0.00 37.59 0.98
2892 3020 5.385198 CTTTACCTACCATTGGTGCCATAT 58.615 41.667 18.83 0.95 38.42 1.78
2896 3024 3.181429 CCTACCATTGGTGCCATATCCTT 60.181 47.826 18.83 0.00 36.19 3.36
2897 3025 3.403228 ACCATTGGTGCCATATCCTTT 57.597 42.857 7.76 0.00 32.98 3.11
2898 3026 3.299503 ACCATTGGTGCCATATCCTTTC 58.700 45.455 7.76 0.00 32.98 2.62
2901 3029 2.620251 TGGTGCCATATCCTTTCTCG 57.380 50.000 0.00 0.00 0.00 4.04
3020 3150 4.282449 TGAAAGAGATTGGTCGTCAGGTTA 59.718 41.667 0.00 0.00 0.00 2.85
3095 3225 5.922544 GCTGAGACTTGCAATATTTGTTGTT 59.077 36.000 0.00 0.00 0.00 2.83
3257 3387 2.955660 CTGTGGCTGGTTAAGGAACAAA 59.044 45.455 0.00 0.00 37.29 2.83
3266 3396 4.354387 TGGTTAAGGAACAAACCCTCCATA 59.646 41.667 2.02 0.00 43.27 2.74
3305 3435 4.545208 AAGCCAAGTTCCTCTAGAGAAC 57.455 45.455 21.76 20.21 0.00 3.01
3313 3443 7.418025 CCAAGTTCCTCTAGAGAACGGAAATAT 60.418 40.741 21.76 4.24 37.29 1.28
3360 3490 3.609853 TGCAATTAGCTCGTTTCCTGAT 58.390 40.909 0.00 0.00 45.94 2.90
3399 3529 8.567948 TGGAGATAAAATATCGGATGAAAAAGC 58.432 33.333 0.00 0.00 0.00 3.51
3469 3599 7.519008 GCTGCACTTAGCTAATTTCGTGATAAT 60.519 37.037 21.44 0.00 45.94 1.28
3487 3618 7.148672 CGTGATAATAGGATGCAGAGAAATGTC 60.149 40.741 0.00 0.00 0.00 3.06
3522 3653 4.001652 GGGGACAACTTAGTCAGTAAAGC 58.998 47.826 0.00 0.00 40.29 3.51
3922 4058 0.036388 GGAATGGAAGTCTCGTGCCA 60.036 55.000 0.00 0.00 34.45 4.92
3993 4130 6.183360 CCATTGGTGCTTGCTTGTACATTATA 60.183 38.462 0.00 0.00 0.00 0.98
4034 4171 5.452078 TGATTGGTTCATTCTTTCCACAC 57.548 39.130 0.00 0.00 0.00 3.82
4200 4337 6.014242 ACCAGCCGATTCTATTCATTATGAGA 60.014 38.462 0.00 0.00 0.00 3.27
4247 4384 0.109597 GGCCTTGTGAGCATGTTTCG 60.110 55.000 0.00 0.00 0.00 3.46
4293 4430 2.568956 CCTTGTCAGATCCCAGTTCTGA 59.431 50.000 1.00 0.00 45.53 3.27
4307 4444 4.452825 CAGTTCTGATGGCAAGATCTGAT 58.547 43.478 16.90 0.00 33.57 2.90
4352 4489 0.636101 AATTGGGGATAAGCTGGCCA 59.364 50.000 4.71 4.71 0.00 5.36
4369 4506 1.135721 GCCAAATCAAGGTGCCAGATC 59.864 52.381 0.00 0.00 0.00 2.75
4373 4510 2.414994 ATCAAGGTGCCAGATCTGTG 57.585 50.000 21.11 13.38 0.00 3.66
4437 4579 6.370994 CAGAATGAGGGGAATAATTCTCGATG 59.629 42.308 0.00 0.00 39.69 3.84
4511 4653 7.222031 AGGTGAAAGTAACGAAAATTGCTTTTC 59.778 33.333 3.62 1.96 42.36 2.29
4541 4683 1.812571 CTCCATGGAGGTCGGTTTTTG 59.187 52.381 31.14 4.36 38.51 2.44
4543 4685 2.041081 TCCATGGAGGTCGGTTTTTGAT 59.959 45.455 11.44 0.00 39.02 2.57
4546 4688 4.461081 CCATGGAGGTCGGTTTTTGATAAA 59.539 41.667 5.56 0.00 0.00 1.40
4618 4814 5.372343 AAACACAGATATACATGGAGGCA 57.628 39.130 0.00 0.00 0.00 4.75
4622 4818 6.467677 ACACAGATATACATGGAGGCATAAC 58.532 40.000 0.00 0.00 0.00 1.89
4653 4849 6.915300 TGTGTACAAATTTTCAGGACGAAATG 59.085 34.615 0.00 0.00 43.12 2.32
4654 4850 6.915843 GTGTACAAATTTTCAGGACGAAATGT 59.084 34.615 0.00 0.00 43.12 2.71
4706 4905 0.810648 TGGCTTTTCGGCACATGATC 59.189 50.000 0.00 0.00 44.12 2.92
4723 4922 2.289565 GATCGTTCATCCCCAAAGTCC 58.710 52.381 0.00 0.00 0.00 3.85
4726 4925 2.841266 TCGTTCATCCCCAAAGTCCATA 59.159 45.455 0.00 0.00 0.00 2.74
4754 4953 7.504922 TTATTTATTTTTGCACAGATCGCAC 57.495 32.000 0.00 0.00 39.59 5.34
4758 4957 1.592064 TTTGCACAGATCGCACTTCA 58.408 45.000 0.00 0.00 39.59 3.02
4787 4987 9.382275 GGTATTTCATCCTAAAATTTTGCACAT 57.618 29.630 13.76 0.00 0.00 3.21
4888 5091 0.107017 CATTTCGGCCTCCATGGAGT 60.107 55.000 34.49 15.87 40.44 3.85
4891 5094 3.083349 CGGCCTCCATGGAGTCCA 61.083 66.667 34.83 15.88 40.02 4.02
4894 5097 0.039618 GGCCTCCATGGAGTCCAAAA 59.960 55.000 32.42 3.59 39.81 2.44
4895 5098 1.177401 GCCTCCATGGAGTCCAAAAC 58.823 55.000 34.49 14.56 40.44 2.43
4896 5099 1.453155 CCTCCATGGAGTCCAAAACG 58.547 55.000 34.49 16.68 40.44 3.60
4902 5111 2.265904 GGAGTCCAAAACGCCCCAC 61.266 63.158 3.60 0.00 41.68 4.61
4959 5205 2.450345 GCGAGGTTTAACCCGAGCG 61.450 63.158 22.43 16.50 39.75 5.03
4965 5211 0.373716 GTTTAACCCGAGCGCTGATG 59.626 55.000 18.48 4.61 0.00 3.07
4966 5212 0.742990 TTTAACCCGAGCGCTGATGG 60.743 55.000 18.48 15.20 0.00 3.51
4967 5213 3.733344 TAACCCGAGCGCTGATGGC 62.733 63.158 18.48 0.00 37.64 4.40
4970 5216 4.827087 CCGAGCGCTGATGGCTGT 62.827 66.667 18.48 0.00 41.72 4.40
4971 5217 3.260483 CGAGCGCTGATGGCTGTC 61.260 66.667 18.48 0.00 41.72 3.51
4972 5218 2.894387 GAGCGCTGATGGCTGTCC 60.894 66.667 18.48 0.00 41.72 4.02
4973 5219 4.827087 AGCGCTGATGGCTGTCCG 62.827 66.667 10.39 0.00 39.77 4.79
4974 5220 4.819761 GCGCTGATGGCTGTCCGA 62.820 66.667 0.00 0.00 39.13 4.55
4975 5221 2.107750 CGCTGATGGCTGTCCGAT 59.892 61.111 0.00 0.00 39.13 4.18
4976 5222 1.522355 CGCTGATGGCTGTCCGATT 60.522 57.895 0.00 0.00 39.13 3.34
4977 5223 1.493950 CGCTGATGGCTGTCCGATTC 61.494 60.000 0.00 0.00 39.13 2.52
4978 5224 1.162800 GCTGATGGCTGTCCGATTCC 61.163 60.000 0.00 0.00 38.06 3.01
4979 5225 0.178767 CTGATGGCTGTCCGATTCCA 59.821 55.000 0.00 0.00 34.14 3.53
4980 5226 0.107703 TGATGGCTGTCCGATTCCAC 60.108 55.000 0.00 0.00 34.14 4.02
4981 5227 0.107703 GATGGCTGTCCGATTCCACA 60.108 55.000 0.00 0.00 34.14 4.17
4982 5228 0.327924 ATGGCTGTCCGATTCCACAA 59.672 50.000 0.00 0.00 34.14 3.33
4983 5229 0.109532 TGGCTGTCCGATTCCACAAA 59.890 50.000 0.00 0.00 34.14 2.83
4984 5230 0.804989 GGCTGTCCGATTCCACAAAG 59.195 55.000 0.00 0.00 0.00 2.77
4985 5231 0.169009 GCTGTCCGATTCCACAAAGC 59.831 55.000 0.00 0.00 0.00 3.51
4986 5232 0.443869 CTGTCCGATTCCACAAAGCG 59.556 55.000 0.00 0.00 46.06 4.68
4987 5233 0.250124 TGTCCGATTCCACAAAGCGT 60.250 50.000 0.00 0.00 45.06 5.07
4988 5234 0.872388 GTCCGATTCCACAAAGCGTT 59.128 50.000 0.00 0.00 45.06 4.84
4989 5235 1.265905 GTCCGATTCCACAAAGCGTTT 59.734 47.619 0.00 0.00 45.06 3.60
4990 5236 1.950909 TCCGATTCCACAAAGCGTTTT 59.049 42.857 0.00 0.00 45.06 2.43
4991 5237 2.031508 TCCGATTCCACAAAGCGTTTTC 60.032 45.455 0.00 0.00 45.06 2.29
4992 5238 2.287308 CCGATTCCACAAAGCGTTTTCA 60.287 45.455 0.00 0.00 45.06 2.69
4993 5239 3.367607 CGATTCCACAAAGCGTTTTCAA 58.632 40.909 0.00 0.00 41.70 2.69
4994 5240 3.794028 CGATTCCACAAAGCGTTTTCAAA 59.206 39.130 0.00 0.00 41.70 2.69
4995 5241 4.266502 CGATTCCACAAAGCGTTTTCAAAA 59.733 37.500 0.00 0.00 41.70 2.44
4996 5242 4.912528 TTCCACAAAGCGTTTTCAAAAC 57.087 36.364 2.61 2.61 0.00 2.43
4997 5243 4.181309 TCCACAAAGCGTTTTCAAAACT 57.819 36.364 11.23 0.00 0.00 2.66
5025 5271 2.223735 ACTGAAGAAACTCGACGCTTCA 60.224 45.455 12.31 12.31 43.00 3.02
5125 5371 8.725148 AGCAGCTTTACATACATATATTCAAGC 58.275 33.333 0.00 0.00 0.00 4.01
5158 5404 3.745975 GCGACAGCAGCCATATTACATAA 59.254 43.478 0.00 0.00 44.35 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 74 0.460311 CCGGCGACCTTACTTGATCT 59.540 55.000 9.30 0.00 0.00 2.75
123 125 0.107508 CATTCCTCGGGTGTCATGCT 60.108 55.000 0.00 0.00 0.00 3.79
134 136 9.241317 CCTTATCAAAAATCAAATCATTCCTCG 57.759 33.333 0.00 0.00 0.00 4.63
189 193 4.277476 ACGCCCAATAATCCTGAATGAAA 58.723 39.130 0.00 0.00 0.00 2.69
199 203 3.131396 ACGAGAATGACGCCCAATAATC 58.869 45.455 0.00 0.00 0.00 1.75
208 212 0.109272 TGACAGGACGAGAATGACGC 60.109 55.000 0.00 0.00 0.00 5.19
213 217 1.866015 TGGGATGACAGGACGAGAAT 58.134 50.000 0.00 0.00 0.00 2.40
242 246 6.049149 TCTTTACCTTTGATGCTAATCTCCG 58.951 40.000 0.00 0.00 33.61 4.63
302 306 5.118286 CCTGCCAAGTCACAAAATTCTTTT 58.882 37.500 0.00 0.00 0.00 2.27
328 332 7.686127 ATTAATCTTAATGAACTCCGTAGCGGT 60.686 37.037 7.47 0.00 38.77 5.68
360 364 1.453155 AAGCCTCCACATAACTTGCG 58.547 50.000 0.00 0.00 0.00 4.85
385 389 2.616330 CGACGCCCACACTTGCAAT 61.616 57.895 0.00 0.00 0.00 3.56
386 390 3.276091 CGACGCCCACACTTGCAA 61.276 61.111 0.00 0.00 0.00 4.08
435 439 7.228706 CACACCCCAATATAATCCTAAGACAAC 59.771 40.741 0.00 0.00 0.00 3.32
437 441 6.690460 GCACACCCCAATATAATCCTAAGACA 60.690 42.308 0.00 0.00 0.00 3.41
441 445 5.654901 TGCACACCCCAATATAATCCTAA 57.345 39.130 0.00 0.00 0.00 2.69
443 447 4.534647 TTGCACACCCCAATATAATCCT 57.465 40.909 0.00 0.00 0.00 3.24
505 510 7.247456 TGTGGAGAGTAATACCAATGTACAA 57.753 36.000 0.00 0.00 35.40 2.41
549 554 5.596836 AAGAAGCCACAAAAGAACAATCA 57.403 34.783 0.00 0.00 0.00 2.57
578 583 9.082313 ACCTTTACATCAACTTGAGATCATTTT 57.918 29.630 0.00 0.00 0.00 1.82
588 593 6.801539 TGCTTCTACCTTTACATCAACTTG 57.198 37.500 0.00 0.00 0.00 3.16
589 594 7.665559 TCAATGCTTCTACCTTTACATCAACTT 59.334 33.333 0.00 0.00 0.00 2.66
597 618 9.384764 AGATAAACTCAATGCTTCTACCTTTAC 57.615 33.333 0.00 0.00 0.00 2.01
603 624 8.386606 CAACTCAGATAAACTCAATGCTTCTAC 58.613 37.037 0.00 0.00 0.00 2.59
649 670 4.377943 CGTGCGTCATCCTGTTAATTTTGA 60.378 41.667 0.00 0.00 0.00 2.69
737 771 2.852449 TCCGTTACAAATTCAGCCACA 58.148 42.857 0.00 0.00 0.00 4.17
809 843 4.098501 GGTGAGATGATGGGGTCAAATTTC 59.901 45.833 0.00 0.00 40.97 2.17
815 849 1.667595 TTGGTGAGATGATGGGGTCA 58.332 50.000 0.00 0.00 42.06 4.02
816 850 2.806945 TTTGGTGAGATGATGGGGTC 57.193 50.000 0.00 0.00 0.00 4.46
817 851 3.011595 TCATTTTGGTGAGATGATGGGGT 59.988 43.478 0.00 0.00 0.00 4.95
818 852 3.382546 GTCATTTTGGTGAGATGATGGGG 59.617 47.826 0.00 0.00 32.92 4.96
819 853 3.065786 CGTCATTTTGGTGAGATGATGGG 59.934 47.826 0.00 0.00 34.64 4.00
820 854 3.488047 GCGTCATTTTGGTGAGATGATGG 60.488 47.826 6.84 0.00 37.31 3.51
821 855 3.127376 TGCGTCATTTTGGTGAGATGATG 59.873 43.478 0.00 0.00 38.96 3.07
822 856 3.127548 GTGCGTCATTTTGGTGAGATGAT 59.872 43.478 0.00 0.00 32.92 2.45
827 861 1.069022 CAGGTGCGTCATTTTGGTGAG 60.069 52.381 0.00 0.00 0.00 3.51
948 982 2.082629 GAGCCGTTGGGTTTGGTTGG 62.083 60.000 0.00 0.00 31.55 3.77
949 983 1.362355 GAGCCGTTGGGTTTGGTTG 59.638 57.895 0.00 0.00 31.55 3.77
950 984 1.830847 GGAGCCGTTGGGTTTGGTT 60.831 57.895 0.00 0.00 31.55 3.67
951 985 2.203437 GGAGCCGTTGGGTTTGGT 60.203 61.111 0.00 0.00 31.55 3.67
1019 1053 2.604686 AGCAGCTCTTCCGGTGGA 60.605 61.111 0.00 0.00 33.23 4.02
1210 1246 1.477105 GTTTCAAGAAACGGCAGCAC 58.523 50.000 9.64 0.00 40.85 4.40
1305 1341 1.067212 CCATAGTCTGAGCACGGGTAC 59.933 57.143 0.00 0.00 0.00 3.34
1514 1550 4.573900 CTCAACAGCTCAAGTAGGAACAT 58.426 43.478 0.00 0.00 0.00 2.71
1603 1639 0.175760 TATGAGAACTCGGCAGTGGC 59.824 55.000 6.62 6.62 40.13 5.01
1609 1645 2.101582 AGACATGGTATGAGAACTCGGC 59.898 50.000 0.00 0.00 0.00 5.54
1655 1691 6.594788 ATTCCTTGATTAAGCTGCAAGAAA 57.405 33.333 16.06 6.70 41.03 2.52
1710 1746 6.618287 TGTTTGTTGACCTCAGAAGTATTG 57.382 37.500 0.00 0.00 0.00 1.90
2016 2053 2.213499 AGCACATCTATTAGCGCCAAC 58.787 47.619 2.29 0.00 0.00 3.77
2021 2058 3.555956 ACCGAAAAGCACATCTATTAGCG 59.444 43.478 0.00 0.00 0.00 4.26
2037 2074 1.066303 GCAACACCATGACAACCGAAA 59.934 47.619 0.00 0.00 0.00 3.46
2044 2081 1.544537 GGTACCTGCAACACCATGACA 60.545 52.381 4.06 0.00 32.32 3.58
2132 2169 4.433186 TTTACCTGATGCCATTTGAACG 57.567 40.909 0.00 0.00 0.00 3.95
2342 2461 7.432252 CACCTTATGAAAGAGTGAACAACAAAC 59.568 37.037 0.00 0.00 36.65 2.93
2368 2487 5.573669 TCCTTTGTTTGCGACTTGTAAAAAC 59.426 36.000 0.00 0.00 33.80 2.43
2377 2496 5.897050 TGTAAATTTCCTTTGTTTGCGACT 58.103 33.333 0.00 0.00 0.00 4.18
2438 2561 2.158827 TGTAGCAGTTTGAGCTCCAACA 60.159 45.455 27.06 8.27 42.32 3.33
2521 2644 3.831911 TCCCAAATTCCCATTCAGAACAC 59.168 43.478 0.00 0.00 0.00 3.32
2534 2657 6.731292 AAGGGCAATATAGTTCCCAAATTC 57.269 37.500 10.57 0.00 41.22 2.17
2536 2659 8.616799 TTAAAAGGGCAATATAGTTCCCAAAT 57.383 30.769 10.57 0.00 41.22 2.32
2539 2662 6.041523 GCATTAAAAGGGCAATATAGTTCCCA 59.958 38.462 10.57 0.00 41.22 4.37
2542 2665 7.290110 AGGCATTAAAAGGGCAATATAGTTC 57.710 36.000 3.75 0.00 37.76 3.01
2635 2760 0.039618 GGAGGGATGTTGCCTTTGGA 59.960 55.000 0.00 0.00 38.79 3.53
2672 2800 6.961359 TTGATCGATACACCTTACAGTTTG 57.039 37.500 0.00 0.00 0.00 2.93
2673 2801 7.492669 CAGATTGATCGATACACCTTACAGTTT 59.507 37.037 0.00 0.00 0.00 2.66
2746 2874 3.475566 TCCTGAAAACAGTCTCCAGTG 57.524 47.619 0.00 0.00 0.00 3.66
2821 2949 6.202188 CCACAACTTATAACGGAGCGATAAAT 59.798 38.462 0.00 0.00 0.00 1.40
2832 2960 7.411274 TGAACTTCAAACCACAACTTATAACG 58.589 34.615 0.00 0.00 0.00 3.18
2866 2994 3.089284 GCACCAATGGTAGGTAAAGCTT 58.911 45.455 3.85 0.00 37.23 3.74
2881 3009 2.238646 ACGAGAAAGGATATGGCACCAA 59.761 45.455 0.00 0.00 0.00 3.67
2983 3113 5.489792 TCTCTTTCACCATTTGACTAGCT 57.510 39.130 0.00 0.00 32.26 3.32
3020 3150 3.964031 GACATGTAAGGACAGGGAGAGAT 59.036 47.826 0.00 0.00 41.73 2.75
3257 3387 5.250774 AGTTGAACATGTAAGTATGGAGGGT 59.749 40.000 0.00 0.00 32.32 4.34
3266 3396 6.952773 TGGCTTTTAGTTGAACATGTAAGT 57.047 33.333 0.00 0.00 0.00 2.24
3305 3435 5.867174 TCAACTGACAGTACACATATTTCCG 59.133 40.000 8.91 0.00 0.00 4.30
3313 3443 4.341235 AGCTAACTCAACTGACAGTACACA 59.659 41.667 8.91 0.00 0.00 3.72
3385 3515 0.254747 TCCCCGCTTTTTCATCCGAT 59.745 50.000 0.00 0.00 0.00 4.18
3399 3529 3.631686 TGCACAGAATTTCATTATCCCCG 59.368 43.478 0.00 0.00 0.00 5.73
3469 3599 4.842531 TTGGACATTTCTCTGCATCCTA 57.157 40.909 0.79 0.00 0.00 2.94
3487 3618 3.387699 AGTTGTCCCCACTTTTTCATTGG 59.612 43.478 0.00 0.00 0.00 3.16
3541 3672 7.401493 TGCCTCCTTTATTTCCCAAAATTGATA 59.599 33.333 0.00 0.00 36.49 2.15
3902 4038 0.744771 GGCACGAGACTTCCATTCCC 60.745 60.000 0.00 0.00 0.00 3.97
3922 4058 0.682532 TCAGAGCGAGAGACCTGCAT 60.683 55.000 0.00 0.00 33.85 3.96
3993 4130 7.177744 ACCAATCAAAGAAAATTACATACGGGT 59.822 33.333 0.00 0.00 0.00 5.28
4034 4171 0.798776 CCGAAGCTAACAGCAACCAG 59.201 55.000 0.38 0.00 45.56 4.00
4200 4337 2.538222 TGGATGGCCAACATTCACATT 58.462 42.857 10.96 0.00 40.22 2.71
4247 4384 6.673796 GCATTTCAGCAGCAAAATGAATTACC 60.674 38.462 25.94 11.32 42.71 2.85
4293 4430 7.160049 CACTTATACTCATCAGATCTTGCCAT 58.840 38.462 0.00 0.00 0.00 4.40
4325 4462 6.129179 CCAGCTTATCCCCAATTTCTTCTTA 58.871 40.000 0.00 0.00 0.00 2.10
4352 4489 3.087031 CACAGATCTGGCACCTTGATTT 58.913 45.455 26.08 0.00 34.19 2.17
4389 4529 4.398673 GGCCCTAGACCTAGAACATATACG 59.601 50.000 5.67 0.00 35.21 3.06
4483 4625 4.148174 GCAATTTTCGTTACTTTCACCTGC 59.852 41.667 0.00 0.00 0.00 4.85
4484 4626 5.519722 AGCAATTTTCGTTACTTTCACCTG 58.480 37.500 0.00 0.00 0.00 4.00
4511 4653 0.179089 CTCCATGGAGCTCAACCTCG 60.179 60.000 28.45 2.18 35.31 4.63
4516 4658 1.617018 CCGACCTCCATGGAGCTCAA 61.617 60.000 32.97 4.05 40.69 3.02
4517 4659 2.060383 CCGACCTCCATGGAGCTCA 61.060 63.158 32.97 2.79 40.69 4.26
4653 4849 2.100584 TGCACAACCCTCATTTCAACAC 59.899 45.455 0.00 0.00 0.00 3.32
4654 4850 2.382882 TGCACAACCCTCATTTCAACA 58.617 42.857 0.00 0.00 0.00 3.33
4681 4880 2.166829 TGTGCCGAAAAGCCATGTATT 58.833 42.857 0.00 0.00 0.00 1.89
4682 4881 1.832883 TGTGCCGAAAAGCCATGTAT 58.167 45.000 0.00 0.00 0.00 2.29
4683 4882 1.472082 CATGTGCCGAAAAGCCATGTA 59.528 47.619 0.00 0.00 37.00 2.29
4706 4905 2.128771 ATGGACTTTGGGGATGAACG 57.871 50.000 0.00 0.00 0.00 3.95
4726 4925 9.971744 GCGATCTGTGCAAAAATAAATAAATTT 57.028 25.926 0.00 0.00 0.00 1.82
4781 4981 5.294734 AGGATGTGATGTGTATATGTGCA 57.705 39.130 0.00 0.00 0.00 4.57
4782 4982 5.528690 ACAAGGATGTGATGTGTATATGTGC 59.471 40.000 0.00 0.00 38.69 4.57
4860 5063 3.323403 TGGAGGCCGAAATGTTTGAAAAT 59.677 39.130 0.00 0.00 0.00 1.82
4888 5091 0.988832 ATAGAGTGGGGCGTTTTGGA 59.011 50.000 0.00 0.00 0.00 3.53
4891 5094 3.518303 AGAACTATAGAGTGGGGCGTTTT 59.482 43.478 6.78 0.00 35.52 2.43
4894 5097 2.431057 CAAGAACTATAGAGTGGGGCGT 59.569 50.000 6.78 0.00 35.52 5.68
4895 5098 2.431057 ACAAGAACTATAGAGTGGGGCG 59.569 50.000 6.78 0.00 35.52 6.13
4896 5099 3.197983 ACACAAGAACTATAGAGTGGGGC 59.802 47.826 6.78 0.00 35.52 5.80
4902 5111 8.988064 TTGCTTAAGACACAAGAACTATAGAG 57.012 34.615 6.67 0.00 0.00 2.43
4959 5205 1.162800 GGAATCGGACAGCCATCAGC 61.163 60.000 0.00 0.00 44.25 4.26
4965 5211 0.804989 CTTTGTGGAATCGGACAGCC 59.195 55.000 0.00 0.00 0.00 4.85
4966 5212 0.169009 GCTTTGTGGAATCGGACAGC 59.831 55.000 0.00 0.00 0.00 4.40
4967 5213 0.443869 CGCTTTGTGGAATCGGACAG 59.556 55.000 0.00 0.00 0.00 3.51
4968 5214 0.250124 ACGCTTTGTGGAATCGGACA 60.250 50.000 0.00 0.00 0.00 4.02
4969 5215 0.872388 AACGCTTTGTGGAATCGGAC 59.128 50.000 0.00 0.00 0.00 4.79
4970 5216 1.600023 AAACGCTTTGTGGAATCGGA 58.400 45.000 0.00 0.00 0.00 4.55
4971 5217 2.287308 TGAAAACGCTTTGTGGAATCGG 60.287 45.455 0.00 0.00 0.00 4.18
4972 5218 2.993545 TGAAAACGCTTTGTGGAATCG 58.006 42.857 0.00 0.00 0.00 3.34
4973 5219 5.290885 AGTTTTGAAAACGCTTTGTGGAATC 59.709 36.000 14.38 0.00 0.00 2.52
4974 5220 5.175127 AGTTTTGAAAACGCTTTGTGGAAT 58.825 33.333 14.38 0.00 0.00 3.01
4975 5221 4.561105 AGTTTTGAAAACGCTTTGTGGAA 58.439 34.783 14.38 0.00 0.00 3.53
4976 5222 4.170256 GAGTTTTGAAAACGCTTTGTGGA 58.830 39.130 15.66 0.00 0.00 4.02
4977 5223 3.923461 TGAGTTTTGAAAACGCTTTGTGG 59.077 39.130 21.64 0.00 0.00 4.17
4978 5224 4.490799 GCTGAGTTTTGAAAACGCTTTGTG 60.491 41.667 21.64 10.24 0.00 3.33
4979 5225 3.612423 GCTGAGTTTTGAAAACGCTTTGT 59.388 39.130 21.64 2.35 0.00 2.83
4980 5226 3.859386 AGCTGAGTTTTGAAAACGCTTTG 59.141 39.130 21.64 14.01 0.00 2.77
4981 5227 4.110036 AGCTGAGTTTTGAAAACGCTTT 57.890 36.364 21.64 3.38 0.00 3.51
4982 5228 3.782889 AGCTGAGTTTTGAAAACGCTT 57.217 38.095 21.64 3.72 0.00 4.68
4983 5229 4.335594 AGTTAGCTGAGTTTTGAAAACGCT 59.664 37.500 21.64 20.72 0.00 5.07
4984 5230 4.437820 CAGTTAGCTGAGTTTTGAAAACGC 59.562 41.667 16.00 16.00 45.28 4.84
4985 5231 5.806286 TCAGTTAGCTGAGTTTTGAAAACG 58.194 37.500 14.38 2.91 45.94 3.60
5025 5271 3.871463 GCATGTCAGAACCTGAACCTGAT 60.871 47.826 0.00 0.00 42.46 2.90
5108 5354 8.870116 TGTAGGACTGCTTGAATATATGTATGT 58.130 33.333 0.00 0.00 0.00 2.29
5113 5359 6.128715 CGCTTGTAGGACTGCTTGAATATATG 60.129 42.308 0.00 0.00 0.00 1.78
5125 5371 0.038251 TGCTGTCGCTTGTAGGACTG 60.038 55.000 0.00 0.00 36.97 3.51
5129 5375 2.103042 GGCTGCTGTCGCTTGTAGG 61.103 63.158 0.00 0.00 36.97 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.