Multiple sequence alignment - TraesCS2A01G147900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G147900 | chr2A | 100.000 | 3350 | 0 | 0 | 1 | 3350 | 94206174 | 94202825 | 0.000000e+00 | 6187.0 |
1 | TraesCS2A01G147900 | chr2A | 88.396 | 1241 | 76 | 29 | 789 | 2024 | 94275416 | 94276593 | 0.000000e+00 | 1432.0 |
2 | TraesCS2A01G147900 | chr2A | 82.032 | 807 | 140 | 5 | 1423 | 2227 | 94162156 | 94161353 | 0.000000e+00 | 682.0 |
3 | TraesCS2A01G147900 | chr2D | 91.620 | 2494 | 145 | 32 | 2 | 2469 | 95656300 | 95653845 | 0.000000e+00 | 3389.0 |
4 | TraesCS2A01G147900 | chr2D | 85.935 | 1749 | 143 | 44 | 689 | 2396 | 95666914 | 95668600 | 0.000000e+00 | 1772.0 |
5 | TraesCS2A01G147900 | chr2D | 89.918 | 1220 | 79 | 29 | 647 | 1836 | 95683611 | 95684816 | 0.000000e+00 | 1531.0 |
6 | TraesCS2A01G147900 | chr2D | 89.039 | 593 | 36 | 12 | 1826 | 2393 | 95685838 | 95686426 | 0.000000e+00 | 708.0 |
7 | TraesCS2A01G147900 | chr2D | 82.404 | 807 | 137 | 5 | 1423 | 2227 | 95649043 | 95648240 | 0.000000e+00 | 699.0 |
8 | TraesCS2A01G147900 | chr2D | 83.871 | 589 | 88 | 7 | 2510 | 3093 | 112538233 | 112538819 | 3.780000e-154 | 555.0 |
9 | TraesCS2A01G147900 | chr2D | 90.805 | 87 | 7 | 1 | 389 | 475 | 95683378 | 95683463 | 7.600000e-22 | 115.0 |
10 | TraesCS2A01G147900 | chr2D | 93.023 | 43 | 3 | 0 | 652 | 694 | 95683494 | 95683536 | 2.790000e-06 | 63.9 |
11 | TraesCS2A01G147900 | chr2B | 88.966 | 2021 | 132 | 46 | 491 | 2469 | 147286756 | 147284785 | 0.000000e+00 | 2412.0 |
12 | TraesCS2A01G147900 | chr2B | 86.524 | 1217 | 90 | 28 | 689 | 1891 | 147409077 | 147407921 | 0.000000e+00 | 1271.0 |
13 | TraesCS2A01G147900 | chr2B | 81.605 | 810 | 138 | 9 | 1423 | 2227 | 146996625 | 146995822 | 0.000000e+00 | 660.0 |
14 | TraesCS2A01G147900 | chr2B | 89.341 | 516 | 37 | 9 | 2 | 515 | 147287398 | 147286899 | 1.700000e-177 | 632.0 |
15 | TraesCS2A01G147900 | chr2B | 92.401 | 329 | 25 | 0 | 1884 | 2212 | 147405301 | 147404973 | 1.410000e-128 | 470.0 |
16 | TraesCS2A01G147900 | chr2B | 85.366 | 123 | 11 | 2 | 2278 | 2396 | 147431491 | 147431610 | 1.630000e-23 | 121.0 |
17 | TraesCS2A01G147900 | chr2B | 85.714 | 84 | 8 | 1 | 2278 | 2357 | 147431127 | 147431210 | 5.960000e-13 | 86.1 |
18 | TraesCS2A01G147900 | chr2B | 85.484 | 62 | 9 | 0 | 2204 | 2265 | 147431233 | 147431294 | 7.760000e-07 | 65.8 |
19 | TraesCS2A01G147900 | chr7D | 86.441 | 590 | 77 | 3 | 2503 | 3089 | 251355416 | 251354827 | 0.000000e+00 | 643.0 |
20 | TraesCS2A01G147900 | chr7D | 83.333 | 600 | 90 | 10 | 2505 | 3098 | 595869660 | 595869065 | 2.270000e-151 | 545.0 |
21 | TraesCS2A01G147900 | chr7A | 85.762 | 597 | 81 | 4 | 2497 | 3091 | 393325158 | 393325752 | 2.190000e-176 | 628.0 |
22 | TraesCS2A01G147900 | chr4D | 85.304 | 592 | 80 | 7 | 2497 | 3086 | 421546000 | 421546586 | 3.700000e-169 | 604.0 |
23 | TraesCS2A01G147900 | chr4D | 85.663 | 558 | 73 | 7 | 2539 | 3092 | 42574053 | 42574607 | 6.230000e-162 | 580.0 |
24 | TraesCS2A01G147900 | chr6B | 84.950 | 598 | 84 | 6 | 2497 | 3091 | 508533430 | 508532836 | 4.780000e-168 | 601.0 |
25 | TraesCS2A01G147900 | chr5B | 83.362 | 589 | 94 | 4 | 2505 | 3090 | 446454719 | 446455306 | 2.940000e-150 | 542.0 |
26 | TraesCS2A01G147900 | chr7B | 83.419 | 585 | 92 | 5 | 2505 | 3086 | 748331676 | 748331094 | 3.800000e-149 | 538.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G147900 | chr2A | 94202825 | 94206174 | 3349 | True | 6187.000 | 6187 | 100.00000 | 1 | 3350 | 1 | chr2A.!!$R2 | 3349 |
1 | TraesCS2A01G147900 | chr2A | 94275416 | 94276593 | 1177 | False | 1432.000 | 1432 | 88.39600 | 789 | 2024 | 1 | chr2A.!!$F1 | 1235 |
2 | TraesCS2A01G147900 | chr2A | 94161353 | 94162156 | 803 | True | 682.000 | 682 | 82.03200 | 1423 | 2227 | 1 | chr2A.!!$R1 | 804 |
3 | TraesCS2A01G147900 | chr2D | 95653845 | 95656300 | 2455 | True | 3389.000 | 3389 | 91.62000 | 2 | 2469 | 1 | chr2D.!!$R2 | 2467 |
4 | TraesCS2A01G147900 | chr2D | 95666914 | 95668600 | 1686 | False | 1772.000 | 1772 | 85.93500 | 689 | 2396 | 1 | chr2D.!!$F1 | 1707 |
5 | TraesCS2A01G147900 | chr2D | 95648240 | 95649043 | 803 | True | 699.000 | 699 | 82.40400 | 1423 | 2227 | 1 | chr2D.!!$R1 | 804 |
6 | TraesCS2A01G147900 | chr2D | 95683378 | 95686426 | 3048 | False | 604.475 | 1531 | 90.69625 | 389 | 2393 | 4 | chr2D.!!$F3 | 2004 |
7 | TraesCS2A01G147900 | chr2D | 112538233 | 112538819 | 586 | False | 555.000 | 555 | 83.87100 | 2510 | 3093 | 1 | chr2D.!!$F2 | 583 |
8 | TraesCS2A01G147900 | chr2B | 147284785 | 147287398 | 2613 | True | 1522.000 | 2412 | 89.15350 | 2 | 2469 | 2 | chr2B.!!$R2 | 2467 |
9 | TraesCS2A01G147900 | chr2B | 147404973 | 147409077 | 4104 | True | 870.500 | 1271 | 89.46250 | 689 | 2212 | 2 | chr2B.!!$R3 | 1523 |
10 | TraesCS2A01G147900 | chr2B | 146995822 | 146996625 | 803 | True | 660.000 | 660 | 81.60500 | 1423 | 2227 | 1 | chr2B.!!$R1 | 804 |
11 | TraesCS2A01G147900 | chr7D | 251354827 | 251355416 | 589 | True | 643.000 | 643 | 86.44100 | 2503 | 3089 | 1 | chr7D.!!$R1 | 586 |
12 | TraesCS2A01G147900 | chr7D | 595869065 | 595869660 | 595 | True | 545.000 | 545 | 83.33300 | 2505 | 3098 | 1 | chr7D.!!$R2 | 593 |
13 | TraesCS2A01G147900 | chr7A | 393325158 | 393325752 | 594 | False | 628.000 | 628 | 85.76200 | 2497 | 3091 | 1 | chr7A.!!$F1 | 594 |
14 | TraesCS2A01G147900 | chr4D | 421546000 | 421546586 | 586 | False | 604.000 | 604 | 85.30400 | 2497 | 3086 | 1 | chr4D.!!$F2 | 589 |
15 | TraesCS2A01G147900 | chr4D | 42574053 | 42574607 | 554 | False | 580.000 | 580 | 85.66300 | 2539 | 3092 | 1 | chr4D.!!$F1 | 553 |
16 | TraesCS2A01G147900 | chr6B | 508532836 | 508533430 | 594 | True | 601.000 | 601 | 84.95000 | 2497 | 3091 | 1 | chr6B.!!$R1 | 594 |
17 | TraesCS2A01G147900 | chr5B | 446454719 | 446455306 | 587 | False | 542.000 | 542 | 83.36200 | 2505 | 3090 | 1 | chr5B.!!$F1 | 585 |
18 | TraesCS2A01G147900 | chr7B | 748331094 | 748331676 | 582 | True | 538.000 | 538 | 83.41900 | 2505 | 3086 | 1 | chr7B.!!$R1 | 581 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
457 | 462 | 0.034670 | ACAGGGCATGGAAGAAGAGC | 60.035 | 55.0 | 3.46 | 0.00 | 0.00 | 4.09 | F |
1410 | 1660 | 0.110823 | CGAGCACGTGGTTAACAAGC | 60.111 | 55.0 | 22.78 | 5.99 | 34.56 | 4.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1633 | 1891 | 1.067060 | CCGGCATCTTGTAGTCGATCA | 59.933 | 52.381 | 0.0 | 0.0 | 0.0 | 2.92 | R |
3256 | 7225 | 0.179124 | TGCAAAAGCAACGTGGAACC | 60.179 | 50.000 | 0.0 | 0.0 | 0.0 | 3.62 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 1.151810 | AGCCCTCCAACTCCTCCAA | 60.152 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
41 | 42 | 2.985282 | CTCCAAAAGCAGCCCGCA | 60.985 | 61.111 | 0.00 | 0.00 | 46.13 | 5.69 |
45 | 46 | 4.603535 | AAAAGCAGCCCGCACCCT | 62.604 | 61.111 | 0.00 | 0.00 | 46.13 | 4.34 |
63 | 64 | 0.933097 | CTGATCAGGACATTTCGCCG | 59.067 | 55.000 | 15.38 | 0.00 | 0.00 | 6.46 |
64 | 65 | 0.461870 | TGATCAGGACATTTCGCCGG | 60.462 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
65 | 66 | 1.153168 | ATCAGGACATTTCGCCGGG | 60.153 | 57.895 | 2.18 | 0.00 | 0.00 | 5.73 |
66 | 67 | 2.608970 | ATCAGGACATTTCGCCGGGG | 62.609 | 60.000 | 13.31 | 13.31 | 0.00 | 5.73 |
103 | 105 | 1.132500 | GCTAGAGGGGGTGTAAGCAT | 58.868 | 55.000 | 0.00 | 0.00 | 34.77 | 3.79 |
110 | 112 | 0.897863 | GGGGTGTAAGCATTGTGGCA | 60.898 | 55.000 | 0.00 | 0.00 | 34.77 | 4.92 |
241 | 245 | 1.444917 | ATCGCTAGCATCACGACCGA | 61.445 | 55.000 | 16.45 | 0.23 | 38.85 | 4.69 |
323 | 327 | 4.384056 | CAGATCTAGCCCATCGACAATTT | 58.616 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
344 | 348 | 8.829612 | CAATTTTAAGGCATTATCCATCAAACC | 58.170 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
370 | 374 | 3.177487 | CACGATCGATCCATGCATAGAG | 58.823 | 50.000 | 24.34 | 4.14 | 0.00 | 2.43 |
415 | 420 | 8.052141 | TCCTTTTCTTTTCCCATGAACAAATTT | 58.948 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
455 | 460 | 3.432186 | CGATTACAGGGCATGGAAGAAGA | 60.432 | 47.826 | 2.26 | 0.00 | 34.35 | 2.87 |
457 | 462 | 0.034670 | ACAGGGCATGGAAGAAGAGC | 60.035 | 55.000 | 3.46 | 0.00 | 0.00 | 4.09 |
484 | 496 | 2.085320 | CTCCCCGACGACCTATCTATG | 58.915 | 57.143 | 0.00 | 0.00 | 0.00 | 2.23 |
499 | 669 | 8.546083 | ACCTATCTATGTATGATCATCCTTCC | 57.454 | 38.462 | 12.53 | 0.00 | 0.00 | 3.46 |
525 | 695 | 3.135712 | TGGACTTTTGAGCTCACTGGTTA | 59.864 | 43.478 | 18.03 | 0.00 | 0.00 | 2.85 |
563 | 740 | 0.389296 | TTGCGTACACCATCGTCCAG | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
566 | 743 | 1.076533 | CGTACACCATCGTCCAGTGC | 61.077 | 60.000 | 0.00 | 0.00 | 34.83 | 4.40 |
609 | 786 | 0.984230 | AGGCCCTCTTGAAACGATCA | 59.016 | 50.000 | 0.00 | 0.00 | 35.85 | 2.92 |
631 | 808 | 3.674997 | AGATGTCGTTTACCATGTGCTT | 58.325 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
633 | 810 | 5.242434 | AGATGTCGTTTACCATGTGCTTTA | 58.758 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
634 | 811 | 5.880332 | AGATGTCGTTTACCATGTGCTTTAT | 59.120 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
635 | 812 | 7.045416 | AGATGTCGTTTACCATGTGCTTTATA | 58.955 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
699 | 878 | 5.007136 | GGAGACATCAAATTCAGACGGAATC | 59.993 | 44.000 | 1.11 | 0.00 | 45.46 | 2.52 |
723 | 906 | 3.879892 | GCTAATTTAACCTCAGCTGGGAG | 59.120 | 47.826 | 17.43 | 7.93 | 34.62 | 4.30 |
866 | 1075 | 0.681733 | TTCCTTCAAGTCAGCGCTCT | 59.318 | 50.000 | 7.13 | 0.00 | 0.00 | 4.09 |
868 | 1077 | 0.320247 | CCTTCAAGTCAGCGCTCTGT | 60.320 | 55.000 | 7.13 | 0.00 | 41.10 | 3.41 |
884 | 1093 | 0.387202 | CTGTAGCTCGAGGGGATGTG | 59.613 | 60.000 | 15.58 | 0.00 | 0.00 | 3.21 |
923 | 1133 | 3.949885 | TTCCTGCGGCGTCTAGGGA | 62.950 | 63.158 | 20.86 | 13.46 | 32.39 | 4.20 |
924 | 1134 | 3.905678 | CCTGCGGCGTCTAGGGAG | 61.906 | 72.222 | 9.37 | 0.00 | 0.00 | 4.30 |
925 | 1135 | 3.141488 | CTGCGGCGTCTAGGGAGT | 61.141 | 66.667 | 9.37 | 0.00 | 0.00 | 3.85 |
965 | 1178 | 3.304559 | CGATTAAGAAACGCAGACAGGAG | 59.695 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
966 | 1179 | 4.495422 | GATTAAGAAACGCAGACAGGAGA | 58.505 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
967 | 1180 | 2.447244 | AAGAAACGCAGACAGGAGAG | 57.553 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
990 | 1204 | 0.627986 | CCCCTGCCAATTCTCCTTCT | 59.372 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1065 | 1298 | 0.179045 | ACGACTGCAGCTTCCACTTT | 60.179 | 50.000 | 15.27 | 0.00 | 0.00 | 2.66 |
1074 | 1307 | 1.001406 | AGCTTCCACTTTCAGTCTCCG | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
1080 | 1314 | 1.122019 | ACTTTCAGTCTCCGGCCACT | 61.122 | 55.000 | 2.24 | 0.00 | 0.00 | 4.00 |
1086 | 1320 | 1.668151 | GTCTCCGGCCACTCAACAC | 60.668 | 63.158 | 2.24 | 0.00 | 0.00 | 3.32 |
1109 | 1352 | 0.471191 | TCGGCTCTAGTGGGTCGATA | 59.529 | 55.000 | 5.93 | 0.00 | 0.00 | 2.92 |
1256 | 1501 | 2.121538 | CGGAGAGCATCGTCAGGGA | 61.122 | 63.158 | 0.00 | 0.00 | 42.67 | 4.20 |
1410 | 1660 | 0.110823 | CGAGCACGTGGTTAACAAGC | 60.111 | 55.000 | 22.78 | 5.99 | 34.56 | 4.01 |
1411 | 1661 | 0.941542 | GAGCACGTGGTTAACAAGCA | 59.058 | 50.000 | 22.78 | 0.00 | 36.38 | 3.91 |
1412 | 1662 | 0.944386 | AGCACGTGGTTAACAAGCAG | 59.056 | 50.000 | 15.81 | 0.00 | 39.94 | 4.24 |
1632 | 1890 | 1.002868 | TTCTTCCTCAGCAGCAGCC | 60.003 | 57.895 | 0.00 | 0.00 | 43.56 | 4.85 |
1633 | 1891 | 1.486997 | TTCTTCCTCAGCAGCAGCCT | 61.487 | 55.000 | 0.00 | 0.00 | 43.56 | 4.58 |
1706 | 1965 | 3.123620 | GAGGCGCTGCAGTTCCTG | 61.124 | 66.667 | 26.43 | 9.82 | 34.12 | 3.86 |
1931 | 5849 | 1.599797 | CTTCACCAACGACCCCACC | 60.600 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
2171 | 6089 | 0.820871 | GCGAGATCAGGAGGAACTGT | 59.179 | 55.000 | 0.00 | 0.00 | 41.55 | 3.55 |
2175 | 6093 | 3.685835 | CGAGATCAGGAGGAACTGTAGGA | 60.686 | 52.174 | 0.00 | 0.00 | 41.55 | 2.94 |
2230 | 6154 | 2.094539 | CACTCGAACGTGCATGCG | 59.905 | 61.111 | 14.09 | 2.45 | 37.94 | 4.73 |
2245 | 6174 | 0.951558 | ATGCGTTCGGTTCTTTTGCT | 59.048 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2246 | 6175 | 0.028770 | TGCGTTCGGTTCTTTTGCTG | 59.971 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2247 | 6176 | 1.268778 | GCGTTCGGTTCTTTTGCTGC | 61.269 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2248 | 6177 | 0.028770 | CGTTCGGTTCTTTTGCTGCA | 59.971 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2249 | 6178 | 1.334960 | CGTTCGGTTCTTTTGCTGCAT | 60.335 | 47.619 | 1.84 | 0.00 | 0.00 | 3.96 |
2250 | 6179 | 2.742774 | GTTCGGTTCTTTTGCTGCATT | 58.257 | 42.857 | 1.84 | 0.00 | 0.00 | 3.56 |
2251 | 6180 | 2.704725 | TCGGTTCTTTTGCTGCATTC | 57.295 | 45.000 | 1.84 | 0.00 | 0.00 | 2.67 |
2252 | 6181 | 1.952990 | TCGGTTCTTTTGCTGCATTCA | 59.047 | 42.857 | 1.84 | 0.00 | 0.00 | 2.57 |
2253 | 6182 | 2.557924 | TCGGTTCTTTTGCTGCATTCAT | 59.442 | 40.909 | 1.84 | 0.00 | 0.00 | 2.57 |
2276 | 6234 | 5.710613 | TGCATTTTGTTTCTTTCGTTTCC | 57.289 | 34.783 | 0.00 | 0.00 | 0.00 | 3.13 |
2320 | 6278 | 4.638865 | AGGTTGTAATTCGATTAACAGGGC | 59.361 | 41.667 | 0.00 | 0.00 | 0.00 | 5.19 |
2398 | 6360 | 5.227569 | TCCAGTCATCTACTTTCTTTGCA | 57.772 | 39.130 | 0.00 | 0.00 | 35.76 | 4.08 |
2469 | 6434 | 5.545063 | TTGCATTAGATCTCCGGTTCATA | 57.455 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
2470 | 6435 | 5.745312 | TGCATTAGATCTCCGGTTCATAT | 57.255 | 39.130 | 0.00 | 0.00 | 0.00 | 1.78 |
2471 | 6436 | 5.482006 | TGCATTAGATCTCCGGTTCATATG | 58.518 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
2472 | 6437 | 4.872691 | GCATTAGATCTCCGGTTCATATGG | 59.127 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
2473 | 6438 | 4.537135 | TTAGATCTCCGGTTCATATGGC | 57.463 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2474 | 6439 | 1.625818 | AGATCTCCGGTTCATATGGCC | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
2475 | 6440 | 1.625818 | GATCTCCGGTTCATATGGCCT | 59.374 | 52.381 | 3.32 | 0.00 | 0.00 | 5.19 |
2476 | 6441 | 1.048601 | TCTCCGGTTCATATGGCCTC | 58.951 | 55.000 | 3.32 | 0.00 | 0.00 | 4.70 |
2477 | 6442 | 1.051812 | CTCCGGTTCATATGGCCTCT | 58.948 | 55.000 | 3.32 | 0.00 | 0.00 | 3.69 |
2478 | 6443 | 1.417890 | CTCCGGTTCATATGGCCTCTT | 59.582 | 52.381 | 3.32 | 0.00 | 0.00 | 2.85 |
2479 | 6444 | 1.416401 | TCCGGTTCATATGGCCTCTTC | 59.584 | 52.381 | 3.32 | 0.00 | 0.00 | 2.87 |
2480 | 6445 | 1.543429 | CCGGTTCATATGGCCTCTTCC | 60.543 | 57.143 | 3.32 | 0.00 | 0.00 | 3.46 |
2481 | 6446 | 1.543429 | CGGTTCATATGGCCTCTTCCC | 60.543 | 57.143 | 3.32 | 0.00 | 0.00 | 3.97 |
2482 | 6447 | 1.202940 | GGTTCATATGGCCTCTTCCCC | 60.203 | 57.143 | 3.32 | 0.00 | 0.00 | 4.81 |
2483 | 6448 | 1.494721 | GTTCATATGGCCTCTTCCCCA | 59.505 | 52.381 | 3.32 | 0.00 | 35.21 | 4.96 |
2484 | 6449 | 1.905839 | TCATATGGCCTCTTCCCCAA | 58.094 | 50.000 | 3.32 | 0.00 | 34.25 | 4.12 |
2485 | 6450 | 1.776667 | TCATATGGCCTCTTCCCCAAG | 59.223 | 52.381 | 3.32 | 0.00 | 34.25 | 3.61 |
2486 | 6451 | 1.776667 | CATATGGCCTCTTCCCCAAGA | 59.223 | 52.381 | 3.32 | 0.00 | 37.11 | 3.02 |
2487 | 6452 | 1.979809 | TATGGCCTCTTCCCCAAGAA | 58.020 | 50.000 | 3.32 | 0.00 | 38.23 | 2.52 |
2488 | 6453 | 1.084018 | ATGGCCTCTTCCCCAAGAAA | 58.916 | 50.000 | 3.32 | 0.00 | 38.23 | 2.52 |
2489 | 6454 | 0.405585 | TGGCCTCTTCCCCAAGAAAG | 59.594 | 55.000 | 3.32 | 0.00 | 38.23 | 2.62 |
2490 | 6455 | 0.698818 | GGCCTCTTCCCCAAGAAAGA | 59.301 | 55.000 | 0.00 | 0.00 | 38.23 | 2.52 |
2491 | 6456 | 1.286257 | GGCCTCTTCCCCAAGAAAGAT | 59.714 | 52.381 | 0.00 | 0.00 | 38.23 | 2.40 |
2492 | 6457 | 2.291865 | GGCCTCTTCCCCAAGAAAGATT | 60.292 | 50.000 | 0.00 | 0.00 | 38.23 | 2.40 |
2493 | 6458 | 3.053619 | GGCCTCTTCCCCAAGAAAGATTA | 60.054 | 47.826 | 0.00 | 0.00 | 38.23 | 1.75 |
2494 | 6459 | 4.203226 | GCCTCTTCCCCAAGAAAGATTAG | 58.797 | 47.826 | 0.00 | 0.00 | 38.23 | 1.73 |
2495 | 6460 | 4.786425 | CCTCTTCCCCAAGAAAGATTAGG | 58.214 | 47.826 | 0.00 | 0.00 | 38.23 | 2.69 |
2501 | 6466 | 3.564352 | CCCCAAGAAAGATTAGGGTTGCT | 60.564 | 47.826 | 0.00 | 0.00 | 37.84 | 3.91 |
2508 | 6473 | 2.463752 | AGATTAGGGTTGCTGTCGGTA | 58.536 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2621 | 6587 | 7.924541 | TGAGTATTGTTAGGGTTTGTATCCTT | 58.075 | 34.615 | 0.00 | 0.00 | 34.75 | 3.36 |
2626 | 6592 | 7.899648 | TTGTTAGGGTTTGTATCCTTTTCAA | 57.100 | 32.000 | 0.00 | 0.00 | 34.75 | 2.69 |
2718 | 6684 | 0.314302 | GCATAGCATCGTCGGTAGGT | 59.686 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2772 | 6740 | 0.464373 | TGGATCTGCTCGGATTTGGC | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2788 | 6756 | 2.417339 | TGGCTATCGTTCGTCTATGC | 57.583 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2807 | 6775 | 1.400494 | GCTCGTGTGTTTTCAGGTTGT | 59.600 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
2862 | 6830 | 1.823470 | TTGCTGTTCTGGTGCGCTT | 60.823 | 52.632 | 9.73 | 0.00 | 0.00 | 4.68 |
2879 | 6847 | 2.298610 | GCTTGTCTTATGGGGCCTTAC | 58.701 | 52.381 | 0.84 | 0.00 | 0.00 | 2.34 |
2947 | 6915 | 1.202545 | GGTAAGGAAGAGGCGATGACC | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
2990 | 6959 | 0.387367 | AGTGCTTGTAGTCGTCGCTG | 60.387 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3005 | 6974 | 2.364324 | GTCGCTGGGTGGTCTATGAATA | 59.636 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3055 | 7024 | 3.507786 | TCGTTGTACCGTCATGATTGAG | 58.492 | 45.455 | 0.00 | 0.00 | 30.85 | 3.02 |
3065 | 7034 | 4.934001 | CCGTCATGATTGAGGATGAATAGG | 59.066 | 45.833 | 0.00 | 0.00 | 39.56 | 2.57 |
3080 | 7049 | 4.495422 | TGAATAGGTCAGAAGTTTCTCGC | 58.505 | 43.478 | 0.00 | 0.00 | 34.74 | 5.03 |
3086 | 7055 | 4.035684 | GGTCAGAAGTTTCTCGCAAAAAC | 58.964 | 43.478 | 0.00 | 0.00 | 34.74 | 2.43 |
3094 | 7063 | 5.752712 | AGTTTCTCGCAAAAACAAGATCTC | 58.247 | 37.500 | 0.00 | 0.00 | 38.73 | 2.75 |
3095 | 7064 | 5.529060 | AGTTTCTCGCAAAAACAAGATCTCT | 59.471 | 36.000 | 0.00 | 0.00 | 38.73 | 3.10 |
3096 | 7065 | 6.706270 | AGTTTCTCGCAAAAACAAGATCTCTA | 59.294 | 34.615 | 0.00 | 0.00 | 38.73 | 2.43 |
3097 | 7066 | 6.712241 | TTCTCGCAAAAACAAGATCTCTAG | 57.288 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
3098 | 7067 | 5.784177 | TCTCGCAAAAACAAGATCTCTAGT | 58.216 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3099 | 7068 | 6.223852 | TCTCGCAAAAACAAGATCTCTAGTT | 58.776 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3100 | 7069 | 6.366332 | TCTCGCAAAAACAAGATCTCTAGTTC | 59.634 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3101 | 7070 | 5.989168 | TCGCAAAAACAAGATCTCTAGTTCA | 59.011 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3102 | 7071 | 6.650807 | TCGCAAAAACAAGATCTCTAGTTCAT | 59.349 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3103 | 7072 | 6.958193 | CGCAAAAACAAGATCTCTAGTTCATC | 59.042 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
3104 | 7073 | 7.360353 | CGCAAAAACAAGATCTCTAGTTCATCA | 60.360 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
3105 | 7074 | 8.457261 | GCAAAAACAAGATCTCTAGTTCATCAT | 58.543 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
3108 | 7077 | 9.730705 | AAAACAAGATCTCTAGTTCATCATTCA | 57.269 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
3109 | 7078 | 9.730705 | AAACAAGATCTCTAGTTCATCATTCAA | 57.269 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3110 | 7079 | 9.730705 | AACAAGATCTCTAGTTCATCATTCAAA | 57.269 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3111 | 7080 | 9.730705 | ACAAGATCTCTAGTTCATCATTCAAAA | 57.269 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3113 | 7082 | 8.961294 | AGATCTCTAGTTCATCATTCAAAAGG | 57.039 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
3114 | 7083 | 8.547173 | AGATCTCTAGTTCATCATTCAAAAGGT | 58.453 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
3115 | 7084 | 9.171877 | GATCTCTAGTTCATCATTCAAAAGGTT | 57.828 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
3116 | 7085 | 8.924511 | TCTCTAGTTCATCATTCAAAAGGTTT | 57.075 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
3122 | 7091 | 9.971922 | AGTTCATCATTCAAAAGGTTTAGAAAG | 57.028 | 29.630 | 0.00 | 0.00 | 0.00 | 2.62 |
3123 | 7092 | 9.965824 | GTTCATCATTCAAAAGGTTTAGAAAGA | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
3125 | 7094 | 8.299570 | TCATCATTCAAAAGGTTTAGAAAGAGC | 58.700 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
3126 | 7095 | 6.981722 | TCATTCAAAAGGTTTAGAAAGAGCC | 58.018 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3127 | 7096 | 6.549364 | TCATTCAAAAGGTTTAGAAAGAGCCA | 59.451 | 34.615 | 0.00 | 0.00 | 0.00 | 4.75 |
3128 | 7097 | 6.783708 | TTCAAAAGGTTTAGAAAGAGCCAA | 57.216 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
3129 | 7098 | 6.976934 | TCAAAAGGTTTAGAAAGAGCCAAT | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3130 | 7099 | 8.472007 | TTCAAAAGGTTTAGAAAGAGCCAATA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
3131 | 7100 | 7.882179 | TCAAAAGGTTTAGAAAGAGCCAATAC | 58.118 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3132 | 7101 | 7.504238 | TCAAAAGGTTTAGAAAGAGCCAATACA | 59.496 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3133 | 7102 | 7.833285 | AAAGGTTTAGAAAGAGCCAATACAA | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3134 | 7103 | 7.833285 | AAGGTTTAGAAAGAGCCAATACAAA | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3135 | 7104 | 8.422577 | AAGGTTTAGAAAGAGCCAATACAAAT | 57.577 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
3136 | 7105 | 8.422577 | AGGTTTAGAAAGAGCCAATACAAATT | 57.577 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
3137 | 7106 | 8.870116 | AGGTTTAGAAAGAGCCAATACAAATTT | 58.130 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3138 | 7107 | 8.925700 | GGTTTAGAAAGAGCCAATACAAATTTG | 58.074 | 33.333 | 16.67 | 16.67 | 0.00 | 2.32 |
3139 | 7108 | 9.691362 | GTTTAGAAAGAGCCAATACAAATTTGA | 57.309 | 29.630 | 24.64 | 8.78 | 0.00 | 2.69 |
3143 | 7112 | 9.428097 | AGAAAGAGCCAATACAAATTTGATTTC | 57.572 | 29.630 | 24.64 | 16.11 | 0.00 | 2.17 |
3144 | 7113 | 7.816945 | AAGAGCCAATACAAATTTGATTTCG | 57.183 | 32.000 | 24.64 | 10.69 | 0.00 | 3.46 |
3145 | 7114 | 6.332630 | AGAGCCAATACAAATTTGATTTCGG | 58.667 | 36.000 | 24.64 | 16.76 | 0.00 | 4.30 |
3146 | 7115 | 4.869861 | AGCCAATACAAATTTGATTTCGGC | 59.130 | 37.500 | 24.64 | 23.84 | 0.00 | 5.54 |
3147 | 7116 | 4.869861 | GCCAATACAAATTTGATTTCGGCT | 59.130 | 37.500 | 24.64 | 2.15 | 0.00 | 5.52 |
3148 | 7117 | 5.351189 | GCCAATACAAATTTGATTTCGGCTT | 59.649 | 36.000 | 24.64 | 1.42 | 0.00 | 4.35 |
3149 | 7118 | 6.128309 | GCCAATACAAATTTGATTTCGGCTTT | 60.128 | 34.615 | 24.64 | 0.68 | 0.00 | 3.51 |
3150 | 7119 | 7.455447 | CCAATACAAATTTGATTTCGGCTTTC | 58.545 | 34.615 | 24.64 | 0.00 | 0.00 | 2.62 |
3151 | 7120 | 7.412891 | CCAATACAAATTTGATTTCGGCTTTCC | 60.413 | 37.037 | 24.64 | 0.00 | 0.00 | 3.13 |
3152 | 7121 | 4.954875 | ACAAATTTGATTTCGGCTTTCCA | 58.045 | 34.783 | 24.64 | 0.00 | 0.00 | 3.53 |
3153 | 7122 | 5.363939 | ACAAATTTGATTTCGGCTTTCCAA | 58.636 | 33.333 | 24.64 | 0.00 | 0.00 | 3.53 |
3154 | 7123 | 5.819901 | ACAAATTTGATTTCGGCTTTCCAAA | 59.180 | 32.000 | 24.64 | 0.00 | 0.00 | 3.28 |
3155 | 7124 | 6.317391 | ACAAATTTGATTTCGGCTTTCCAAAA | 59.683 | 30.769 | 24.64 | 0.00 | 0.00 | 2.44 |
3156 | 7125 | 6.934048 | AATTTGATTTCGGCTTTCCAAAAA | 57.066 | 29.167 | 0.00 | 0.00 | 0.00 | 1.94 |
3182 | 7151 | 8.868522 | AATTGATTTCAGACATTTAGAGGACA | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
3183 | 7152 | 8.868522 | ATTGATTTCAGACATTTAGAGGACAA | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3184 | 7153 | 8.690203 | TTGATTTCAGACATTTAGAGGACAAA | 57.310 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
3185 | 7154 | 8.868522 | TGATTTCAGACATTTAGAGGACAAAT | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
3186 | 7155 | 9.300681 | TGATTTCAGACATTTAGAGGACAAATT | 57.699 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3230 | 7199 | 7.939784 | AATTTAGTTGTGAAATACTCCCTCC | 57.060 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3231 | 7200 | 3.611766 | AGTTGTGAAATACTCCCTCCG | 57.388 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
3232 | 7201 | 2.904434 | AGTTGTGAAATACTCCCTCCGT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3233 | 7202 | 4.091549 | AGTTGTGAAATACTCCCTCCGTA | 58.908 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
3234 | 7203 | 4.081807 | AGTTGTGAAATACTCCCTCCGTAC | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
3235 | 7204 | 3.433343 | TGTGAAATACTCCCTCCGTACA | 58.567 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3236 | 7205 | 4.028131 | TGTGAAATACTCCCTCCGTACAT | 58.972 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
3237 | 7206 | 4.468510 | TGTGAAATACTCCCTCCGTACATT | 59.531 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
3238 | 7207 | 5.657745 | TGTGAAATACTCCCTCCGTACATTA | 59.342 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3239 | 7208 | 6.154877 | TGTGAAATACTCCCTCCGTACATTAA | 59.845 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3240 | 7209 | 7.147620 | TGTGAAATACTCCCTCCGTACATTAAT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3241 | 7210 | 8.362639 | GTGAAATACTCCCTCCGTACATTAATA | 58.637 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3242 | 7211 | 9.096823 | TGAAATACTCCCTCCGTACATTAATAT | 57.903 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3248 | 7217 | 8.680903 | ACTCCCTCCGTACATTAATATAATACG | 58.319 | 37.037 | 11.12 | 11.12 | 38.62 | 3.06 |
3249 | 7218 | 8.579850 | TCCCTCCGTACATTAATATAATACGT | 57.420 | 34.615 | 14.49 | 0.00 | 37.51 | 3.57 |
3250 | 7219 | 8.461222 | TCCCTCCGTACATTAATATAATACGTG | 58.539 | 37.037 | 0.00 | 9.33 | 37.51 | 4.49 |
3251 | 7220 | 8.246180 | CCCTCCGTACATTAATATAATACGTGT | 58.754 | 37.037 | 0.00 | 0.00 | 37.51 | 4.49 |
3252 | 7221 | 9.630098 | CCTCCGTACATTAATATAATACGTGTT | 57.370 | 33.333 | 2.29 | 2.29 | 37.51 | 3.32 |
3255 | 7224 | 9.519905 | CCGTACATTAATATAATACGTGTTTGC | 57.480 | 33.333 | 1.91 | 0.00 | 37.51 | 3.68 |
3256 | 7225 | 9.230583 | CGTACATTAATATAATACGTGTTTGCG | 57.769 | 33.333 | 1.91 | 0.00 | 35.17 | 4.85 |
3257 | 7226 | 9.519905 | GTACATTAATATAATACGTGTTTGCGG | 57.480 | 33.333 | 1.91 | 0.00 | 35.98 | 5.69 |
3258 | 7227 | 8.145316 | ACATTAATATAATACGTGTTTGCGGT | 57.855 | 30.769 | 1.91 | 0.00 | 35.98 | 5.68 |
3259 | 7228 | 8.614346 | ACATTAATATAATACGTGTTTGCGGTT | 58.386 | 29.630 | 1.91 | 0.00 | 35.98 | 4.44 |
3260 | 7229 | 9.098746 | CATTAATATAATACGTGTTTGCGGTTC | 57.901 | 33.333 | 1.91 | 0.00 | 35.98 | 3.62 |
3261 | 7230 | 5.662211 | ATATAATACGTGTTTGCGGTTCC | 57.338 | 39.130 | 1.91 | 0.00 | 35.98 | 3.62 |
3262 | 7231 | 1.595466 | AATACGTGTTTGCGGTTCCA | 58.405 | 45.000 | 0.00 | 0.00 | 35.98 | 3.53 |
3263 | 7232 | 0.869730 | ATACGTGTTTGCGGTTCCAC | 59.130 | 50.000 | 0.00 | 0.00 | 35.98 | 4.02 |
3264 | 7233 | 2.052590 | CGTGTTTGCGGTTCCACG | 60.053 | 61.111 | 0.00 | 0.00 | 43.70 | 4.94 |
3265 | 7234 | 2.815298 | CGTGTTTGCGGTTCCACGT | 61.815 | 57.895 | 0.00 | 0.00 | 44.04 | 4.49 |
3266 | 7235 | 1.430228 | GTGTTTGCGGTTCCACGTT | 59.570 | 52.632 | 0.00 | 0.00 | 35.98 | 3.99 |
3267 | 7236 | 0.863957 | GTGTTTGCGGTTCCACGTTG | 60.864 | 55.000 | 0.00 | 0.00 | 35.98 | 4.10 |
3268 | 7237 | 1.942223 | GTTTGCGGTTCCACGTTGC | 60.942 | 57.895 | 0.00 | 0.00 | 35.98 | 4.17 |
3269 | 7238 | 2.115911 | TTTGCGGTTCCACGTTGCT | 61.116 | 52.632 | 0.00 | 0.00 | 35.98 | 3.91 |
3270 | 7239 | 1.658686 | TTTGCGGTTCCACGTTGCTT | 61.659 | 50.000 | 0.00 | 0.00 | 35.98 | 3.91 |
3271 | 7240 | 1.658686 | TTGCGGTTCCACGTTGCTTT | 61.659 | 50.000 | 0.00 | 0.00 | 35.98 | 3.51 |
3272 | 7241 | 1.065109 | GCGGTTCCACGTTGCTTTT | 59.935 | 52.632 | 0.00 | 0.00 | 35.98 | 2.27 |
3273 | 7242 | 1.206115 | GCGGTTCCACGTTGCTTTTG | 61.206 | 55.000 | 0.00 | 0.00 | 35.98 | 2.44 |
3317 | 7286 | 9.926158 | TTTGAACTGCAAAAATGTGTCATATAT | 57.074 | 25.926 | 0.00 | 0.00 | 43.18 | 0.86 |
3343 | 7312 | 8.874744 | AATTAGTGTACAGAGGTAGTAACAGA | 57.125 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
3344 | 7313 | 9.476928 | AATTAGTGTACAGAGGTAGTAACAGAT | 57.523 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3346 | 7315 | 7.862512 | AGTGTACAGAGGTAGTAACAGATAC | 57.137 | 40.000 | 0.00 | 0.00 | 34.52 | 2.24 |
3347 | 7316 | 6.538021 | AGTGTACAGAGGTAGTAACAGATACG | 59.462 | 42.308 | 0.00 | 0.00 | 39.62 | 3.06 |
3348 | 7317 | 6.314896 | GTGTACAGAGGTAGTAACAGATACGT | 59.685 | 42.308 | 0.00 | 0.00 | 39.62 | 3.57 |
3349 | 7318 | 7.492669 | GTGTACAGAGGTAGTAACAGATACGTA | 59.507 | 40.741 | 0.00 | 0.00 | 39.62 | 3.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 0.461870 | CCGGCGAAATGTCCTGATCA | 60.462 | 55.000 | 9.30 | 0.00 | 0.00 | 2.92 |
83 | 85 | 0.042731 | TGCTTACACCCCCTCTAGCT | 59.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
91 | 93 | 0.897863 | TGCCACAATGCTTACACCCC | 60.898 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
103 | 105 | 0.605319 | CGAAACCCTAGCTGCCACAA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
110 | 112 | 1.602327 | GGTCGACCGAAACCCTAGCT | 61.602 | 60.000 | 20.85 | 0.00 | 0.00 | 3.32 |
241 | 245 | 2.025226 | TCGATCCCTACTTCACCAGTCT | 60.025 | 50.000 | 0.00 | 0.00 | 36.88 | 3.24 |
323 | 327 | 4.582656 | CCGGTTTGATGGATAATGCCTTAA | 59.417 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
344 | 348 | 1.300156 | ATGGATCGATCGTGCACCG | 60.300 | 57.895 | 18.81 | 9.55 | 38.13 | 4.94 |
370 | 374 | 4.068599 | AGGAAAGAAGAAAGCTAGTGTGC | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
377 | 381 | 7.268586 | GGAAAAGAAAAGGAAAGAAGAAAGCT | 58.731 | 34.615 | 0.00 | 0.00 | 0.00 | 3.74 |
383 | 387 | 7.054491 | TCATGGGAAAAGAAAAGGAAAGAAG | 57.946 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
415 | 420 | 2.203084 | TGCAAACCGACGCCTCAA | 60.203 | 55.556 | 0.00 | 0.00 | 0.00 | 3.02 |
475 | 480 | 7.286546 | ACGGAAGGATGATCATACATAGATAGG | 59.713 | 40.741 | 20.23 | 3.51 | 0.00 | 2.57 |
484 | 496 | 3.069586 | TCCACACGGAAGGATGATCATAC | 59.930 | 47.826 | 10.19 | 10.19 | 38.83 | 2.39 |
499 | 669 | 1.261619 | GTGAGCTCAAAAGTCCACACG | 59.738 | 52.381 | 20.19 | 0.00 | 31.59 | 4.49 |
525 | 695 | 5.123820 | ACGCAATGACAAAAGTACTGCATAT | 59.876 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
563 | 740 | 2.125952 | GGCGAATTTGCTGGGCAC | 60.126 | 61.111 | 17.19 | 0.00 | 38.71 | 5.01 |
566 | 743 | 2.179018 | CACGGCGAATTTGCTGGG | 59.821 | 61.111 | 26.73 | 21.24 | 45.70 | 4.45 |
609 | 786 | 3.674997 | AGCACATGGTAAACGACATCTT | 58.325 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
631 | 808 | 7.201661 | GGCGACATGTTTGTTTACTCCATATAA | 60.202 | 37.037 | 0.00 | 0.00 | 35.79 | 0.98 |
633 | 810 | 5.065988 | GGCGACATGTTTGTTTACTCCATAT | 59.934 | 40.000 | 0.00 | 0.00 | 35.79 | 1.78 |
634 | 811 | 4.393680 | GGCGACATGTTTGTTTACTCCATA | 59.606 | 41.667 | 0.00 | 0.00 | 35.79 | 2.74 |
635 | 812 | 3.190535 | GGCGACATGTTTGTTTACTCCAT | 59.809 | 43.478 | 0.00 | 0.00 | 35.79 | 3.41 |
699 | 878 | 3.629398 | CCCAGCTGAGGTTAAATTAGCAG | 59.371 | 47.826 | 17.39 | 0.00 | 36.87 | 4.24 |
723 | 906 | 2.552031 | GTGGACGGATAGGCTTTTCTC | 58.448 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
866 | 1075 | 0.324368 | ACACATCCCCTCGAGCTACA | 60.324 | 55.000 | 6.99 | 0.00 | 0.00 | 2.74 |
868 | 1077 | 1.676678 | GCACACATCCCCTCGAGCTA | 61.677 | 60.000 | 6.99 | 0.00 | 0.00 | 3.32 |
876 | 1085 | 0.250901 | ACAACTCAGCACACATCCCC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
884 | 1093 | 2.246739 | TGCGAGCACAACTCAGCAC | 61.247 | 57.895 | 0.00 | 0.00 | 46.63 | 4.40 |
923 | 1133 | 0.543749 | GGCAGAGCATGTTCCCTACT | 59.456 | 55.000 | 5.87 | 0.00 | 0.00 | 2.57 |
924 | 1134 | 0.464554 | GGGCAGAGCATGTTCCCTAC | 60.465 | 60.000 | 5.87 | 0.00 | 34.19 | 3.18 |
925 | 1135 | 1.915228 | GGGCAGAGCATGTTCCCTA | 59.085 | 57.895 | 5.87 | 0.00 | 34.19 | 3.53 |
990 | 1204 | 0.876777 | CCATTTATACGCGCGGGACA | 60.877 | 55.000 | 35.22 | 16.34 | 0.00 | 4.02 |
1065 | 1298 | 1.533033 | TTGAGTGGCCGGAGACTGA | 60.533 | 57.895 | 5.05 | 0.00 | 0.00 | 3.41 |
1074 | 1307 | 1.507141 | CCGAGTTGTGTTGAGTGGCC | 61.507 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1080 | 1314 | 1.961394 | ACTAGAGCCGAGTTGTGTTGA | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1086 | 1320 | 0.173708 | GACCCACTAGAGCCGAGTTG | 59.826 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1109 | 1352 | 1.694048 | CCCTACCCATCCTTGAGCTCT | 60.694 | 57.143 | 16.19 | 0.00 | 0.00 | 4.09 |
1188 | 1433 | 2.445845 | CTCACCCTATGCCCCGGA | 60.446 | 66.667 | 0.73 | 0.00 | 0.00 | 5.14 |
1347 | 1592 | 3.685836 | AAAAACAGTTGACAGTACGGC | 57.314 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 |
1632 | 1890 | 2.389059 | CGGCATCTTGTAGTCGATCAG | 58.611 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
1633 | 1891 | 1.067060 | CCGGCATCTTGTAGTCGATCA | 59.933 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
1682 | 1941 | 1.962822 | CTGCAGCGCCTCAGTTTCA | 60.963 | 57.895 | 15.85 | 0.00 | 0.00 | 2.69 |
1685 | 1944 | 2.111878 | AACTGCAGCGCCTCAGTT | 59.888 | 55.556 | 28.40 | 28.40 | 45.57 | 3.16 |
1706 | 1965 | 4.360405 | TTGAAGAAGGGCGGGGGC | 62.360 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
1844 | 3135 | 2.284405 | ATGTCGGAGGGGTTCGGT | 60.284 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
1931 | 5849 | 2.048222 | ACGATGTCCTGCACCACG | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 4.94 |
2171 | 6089 | 5.424757 | CAACCCTATTTGTTGACGATCCTA | 58.575 | 41.667 | 0.00 | 0.00 | 44.57 | 2.94 |
2175 | 6093 | 3.440173 | CAGCAACCCTATTTGTTGACGAT | 59.560 | 43.478 | 7.28 | 0.00 | 44.57 | 3.73 |
2230 | 6154 | 2.422276 | ATGCAGCAAAAGAACCGAAC | 57.578 | 45.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2232 | 6156 | 1.952990 | TGAATGCAGCAAAAGAACCGA | 59.047 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
2233 | 6157 | 2.420628 | TGAATGCAGCAAAAGAACCG | 57.579 | 45.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2247 | 6176 | 7.346695 | ACGAAAGAAACAAAATGCAATGAATG | 58.653 | 30.769 | 0.00 | 0.00 | 0.00 | 2.67 |
2248 | 6177 | 7.481275 | ACGAAAGAAACAAAATGCAATGAAT | 57.519 | 28.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2249 | 6178 | 6.900568 | ACGAAAGAAACAAAATGCAATGAA | 57.099 | 29.167 | 0.00 | 0.00 | 0.00 | 2.57 |
2250 | 6179 | 6.900568 | AACGAAAGAAACAAAATGCAATGA | 57.099 | 29.167 | 0.00 | 0.00 | 0.00 | 2.57 |
2251 | 6180 | 6.628461 | GGAAACGAAAGAAACAAAATGCAATG | 59.372 | 34.615 | 0.00 | 0.00 | 0.00 | 2.82 |
2252 | 6181 | 6.538381 | AGGAAACGAAAGAAACAAAATGCAAT | 59.462 | 30.769 | 0.00 | 0.00 | 0.00 | 3.56 |
2253 | 6182 | 5.872070 | AGGAAACGAAAGAAACAAAATGCAA | 59.128 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2398 | 6360 | 5.296748 | GTCGCCCCATAAATTAATGCATTT | 58.703 | 37.500 | 18.75 | 2.40 | 0.00 | 2.32 |
2422 | 6385 | 1.156736 | CACCTAAACCTTCGGTGCAG | 58.843 | 55.000 | 0.00 | 0.00 | 41.39 | 4.41 |
2469 | 6434 | 1.006400 | CTTTCTTGGGGAAGAGGCCAT | 59.994 | 52.381 | 5.01 | 0.00 | 35.16 | 4.40 |
2470 | 6435 | 0.405585 | CTTTCTTGGGGAAGAGGCCA | 59.594 | 55.000 | 5.01 | 0.00 | 35.16 | 5.36 |
2471 | 6436 | 0.698818 | TCTTTCTTGGGGAAGAGGCC | 59.301 | 55.000 | 0.00 | 0.00 | 35.16 | 5.19 |
2472 | 6437 | 2.816777 | ATCTTTCTTGGGGAAGAGGC | 57.183 | 50.000 | 0.00 | 0.00 | 35.16 | 4.70 |
2473 | 6438 | 4.786425 | CCTAATCTTTCTTGGGGAAGAGG | 58.214 | 47.826 | 0.00 | 0.00 | 35.16 | 3.69 |
2480 | 6445 | 3.445096 | CAGCAACCCTAATCTTTCTTGGG | 59.555 | 47.826 | 0.00 | 0.00 | 43.26 | 4.12 |
2481 | 6446 | 4.082125 | ACAGCAACCCTAATCTTTCTTGG | 58.918 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
2482 | 6447 | 4.142816 | CGACAGCAACCCTAATCTTTCTTG | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
2483 | 6448 | 4.003648 | CGACAGCAACCCTAATCTTTCTT | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2484 | 6449 | 3.600388 | CGACAGCAACCCTAATCTTTCT | 58.400 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2485 | 6450 | 2.678336 | CCGACAGCAACCCTAATCTTTC | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
2486 | 6451 | 2.039879 | ACCGACAGCAACCCTAATCTTT | 59.960 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2487 | 6452 | 1.628846 | ACCGACAGCAACCCTAATCTT | 59.371 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
2488 | 6453 | 1.276622 | ACCGACAGCAACCCTAATCT | 58.723 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2489 | 6454 | 2.547826 | GTACCGACAGCAACCCTAATC | 58.452 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
2490 | 6455 | 1.134907 | CGTACCGACAGCAACCCTAAT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
2491 | 6456 | 0.244450 | CGTACCGACAGCAACCCTAA | 59.756 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2492 | 6457 | 1.885157 | CGTACCGACAGCAACCCTA | 59.115 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
2493 | 6458 | 2.654877 | CGTACCGACAGCAACCCT | 59.345 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
2494 | 6459 | 3.116531 | GCGTACCGACAGCAACCC | 61.117 | 66.667 | 0.00 | 0.00 | 0.00 | 4.11 |
2495 | 6460 | 3.116531 | GGCGTACCGACAGCAACC | 61.117 | 66.667 | 0.00 | 0.00 | 33.63 | 3.77 |
2501 | 6466 | 1.607148 | CATAGATGAGGCGTACCGACA | 59.393 | 52.381 | 0.00 | 0.00 | 42.76 | 4.35 |
2508 | 6473 | 1.447643 | GCCACCATAGATGAGGCGT | 59.552 | 57.895 | 9.28 | 0.00 | 38.39 | 5.68 |
2519 | 6484 | 4.860835 | ATGGTCCTAGGCCACCAT | 57.139 | 55.556 | 23.52 | 23.52 | 46.46 | 3.55 |
2537 | 6503 | 3.083997 | GGGATCCACCGCACTCCT | 61.084 | 66.667 | 15.23 | 0.00 | 40.11 | 3.69 |
2570 | 6536 | 7.544804 | AGAACCATCTAAAAATGAAGCCTTT | 57.455 | 32.000 | 0.00 | 0.00 | 32.88 | 3.11 |
2572 | 6538 | 7.233348 | TCAAAGAACCATCTAAAAATGAAGCCT | 59.767 | 33.333 | 0.00 | 0.00 | 33.77 | 4.58 |
2601 | 6567 | 8.485578 | TTGAAAAGGATACAAACCCTAACAAT | 57.514 | 30.769 | 0.00 | 0.00 | 41.41 | 2.71 |
2621 | 6587 | 0.949105 | GCCGTCTCGCCTTCTTGAAA | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2700 | 6666 | 1.337071 | ACACCTACCGACGATGCTATG | 59.663 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
2701 | 6667 | 1.337071 | CACACCTACCGACGATGCTAT | 59.663 | 52.381 | 0.00 | 0.00 | 0.00 | 2.97 |
2772 | 6740 | 3.219189 | CACGAGCATAGACGAACGATAG | 58.781 | 50.000 | 0.14 | 0.00 | 46.19 | 2.08 |
2788 | 6756 | 5.236478 | AGAATACAACCTGAAAACACACGAG | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2862 | 6830 | 1.562475 | GTGGTAAGGCCCCATAAGACA | 59.438 | 52.381 | 0.00 | 0.00 | 33.76 | 3.41 |
2879 | 6847 | 2.126580 | GTCGGGAAGTCGTCGTGG | 60.127 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
2990 | 6959 | 9.520515 | AATTACATTCATATTCATAGACCACCC | 57.479 | 33.333 | 0.00 | 0.00 | 0.00 | 4.61 |
3029 | 6998 | 2.128821 | CATGACGGTACAACGAACACA | 58.871 | 47.619 | 0.00 | 0.00 | 37.61 | 3.72 |
3043 | 7012 | 5.545588 | ACCTATTCATCCTCAATCATGACG | 58.454 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3055 | 7024 | 5.751028 | CGAGAAACTTCTGACCTATTCATCC | 59.249 | 44.000 | 0.00 | 0.00 | 37.73 | 3.51 |
3065 | 7034 | 4.658071 | TGTTTTTGCGAGAAACTTCTGAC | 58.342 | 39.130 | 0.00 | 0.00 | 37.73 | 3.51 |
3096 | 7065 | 9.971922 | CTTTCTAAACCTTTTGAATGATGAACT | 57.028 | 29.630 | 3.38 | 0.00 | 33.31 | 3.01 |
3097 | 7066 | 9.965824 | TCTTTCTAAACCTTTTGAATGATGAAC | 57.034 | 29.630 | 6.50 | 0.00 | 34.15 | 3.18 |
3099 | 7068 | 8.299570 | GCTCTTTCTAAACCTTTTGAATGATGA | 58.700 | 33.333 | 9.39 | 2.12 | 36.41 | 2.92 |
3100 | 7069 | 7.543520 | GGCTCTTTCTAAACCTTTTGAATGATG | 59.456 | 37.037 | 9.39 | 6.81 | 36.41 | 3.07 |
3101 | 7070 | 7.233348 | TGGCTCTTTCTAAACCTTTTGAATGAT | 59.767 | 33.333 | 9.39 | 0.00 | 36.41 | 2.45 |
3102 | 7071 | 6.549364 | TGGCTCTTTCTAAACCTTTTGAATGA | 59.451 | 34.615 | 8.91 | 8.91 | 35.48 | 2.57 |
3103 | 7072 | 6.748132 | TGGCTCTTTCTAAACCTTTTGAATG | 58.252 | 36.000 | 0.00 | 0.47 | 33.31 | 2.67 |
3104 | 7073 | 6.976934 | TGGCTCTTTCTAAACCTTTTGAAT | 57.023 | 33.333 | 0.00 | 0.00 | 33.31 | 2.57 |
3105 | 7074 | 6.783708 | TTGGCTCTTTCTAAACCTTTTGAA | 57.216 | 33.333 | 0.00 | 0.00 | 31.81 | 2.69 |
3106 | 7075 | 6.976934 | ATTGGCTCTTTCTAAACCTTTTGA | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3107 | 7076 | 7.657336 | TGTATTGGCTCTTTCTAAACCTTTTG | 58.343 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
3108 | 7077 | 7.833285 | TGTATTGGCTCTTTCTAAACCTTTT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3109 | 7078 | 7.833285 | TTGTATTGGCTCTTTCTAAACCTTT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3110 | 7079 | 7.833285 | TTTGTATTGGCTCTTTCTAAACCTT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 3.50 |
3111 | 7080 | 8.422577 | AATTTGTATTGGCTCTTTCTAAACCT | 57.577 | 30.769 | 0.00 | 0.00 | 0.00 | 3.50 |
3112 | 7081 | 8.925700 | CAAATTTGTATTGGCTCTTTCTAAACC | 58.074 | 33.333 | 10.15 | 0.00 | 0.00 | 3.27 |
3113 | 7082 | 9.691362 | TCAAATTTGTATTGGCTCTTTCTAAAC | 57.309 | 29.630 | 17.47 | 0.00 | 0.00 | 2.01 |
3117 | 7086 | 9.428097 | GAAATCAAATTTGTATTGGCTCTTTCT | 57.572 | 29.630 | 17.47 | 0.00 | 31.47 | 2.52 |
3118 | 7087 | 8.375465 | CGAAATCAAATTTGTATTGGCTCTTTC | 58.625 | 33.333 | 17.47 | 11.47 | 31.47 | 2.62 |
3119 | 7088 | 7.331687 | CCGAAATCAAATTTGTATTGGCTCTTT | 59.668 | 33.333 | 17.47 | 5.50 | 31.47 | 2.52 |
3120 | 7089 | 6.813152 | CCGAAATCAAATTTGTATTGGCTCTT | 59.187 | 34.615 | 17.47 | 1.67 | 31.47 | 2.85 |
3121 | 7090 | 6.332630 | CCGAAATCAAATTTGTATTGGCTCT | 58.667 | 36.000 | 17.47 | 2.26 | 31.47 | 4.09 |
3122 | 7091 | 5.005682 | GCCGAAATCAAATTTGTATTGGCTC | 59.994 | 40.000 | 26.79 | 16.08 | 31.47 | 4.70 |
3123 | 7092 | 4.869861 | GCCGAAATCAAATTTGTATTGGCT | 59.130 | 37.500 | 26.79 | 11.74 | 31.47 | 4.75 |
3124 | 7093 | 4.869861 | AGCCGAAATCAAATTTGTATTGGC | 59.130 | 37.500 | 26.78 | 26.78 | 31.47 | 4.52 |
3125 | 7094 | 6.966435 | AAGCCGAAATCAAATTTGTATTGG | 57.034 | 33.333 | 17.47 | 16.68 | 31.47 | 3.16 |
3126 | 7095 | 7.117523 | TGGAAAGCCGAAATCAAATTTGTATTG | 59.882 | 33.333 | 17.47 | 8.87 | 36.79 | 1.90 |
3127 | 7096 | 7.158021 | TGGAAAGCCGAAATCAAATTTGTATT | 58.842 | 30.769 | 17.47 | 13.16 | 36.79 | 1.89 |
3128 | 7097 | 6.696411 | TGGAAAGCCGAAATCAAATTTGTAT | 58.304 | 32.000 | 17.47 | 7.53 | 36.79 | 2.29 |
3129 | 7098 | 6.090483 | TGGAAAGCCGAAATCAAATTTGTA | 57.910 | 33.333 | 17.47 | 5.54 | 36.79 | 2.41 |
3130 | 7099 | 4.954875 | TGGAAAGCCGAAATCAAATTTGT | 58.045 | 34.783 | 17.47 | 3.04 | 36.79 | 2.83 |
3131 | 7100 | 5.921004 | TTGGAAAGCCGAAATCAAATTTG | 57.079 | 34.783 | 12.15 | 12.15 | 36.79 | 2.32 |
3132 | 7101 | 6.934048 | TTTTGGAAAGCCGAAATCAAATTT | 57.066 | 29.167 | 0.00 | 0.00 | 41.60 | 1.82 |
3133 | 7102 | 6.934048 | TTTTTGGAAAGCCGAAATCAAATT | 57.066 | 29.167 | 0.00 | 0.00 | 44.95 | 1.82 |
3156 | 7125 | 9.300681 | TGTCCTCTAAATGTCTGAAATCAATTT | 57.699 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3157 | 7126 | 8.868522 | TGTCCTCTAAATGTCTGAAATCAATT | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
3158 | 7127 | 8.868522 | TTGTCCTCTAAATGTCTGAAATCAAT | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3159 | 7128 | 8.690203 | TTTGTCCTCTAAATGTCTGAAATCAA | 57.310 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3160 | 7129 | 8.868522 | ATTTGTCCTCTAAATGTCTGAAATCA | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3204 | 7173 | 9.457436 | GGAGGGAGTATTTCACAACTAAATTTA | 57.543 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3205 | 7174 | 7.120726 | CGGAGGGAGTATTTCACAACTAAATTT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
3206 | 7175 | 6.598064 | CGGAGGGAGTATTTCACAACTAAATT | 59.402 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
3207 | 7176 | 6.113411 | CGGAGGGAGTATTTCACAACTAAAT | 58.887 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3208 | 7177 | 5.012354 | ACGGAGGGAGTATTTCACAACTAAA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3209 | 7178 | 4.529377 | ACGGAGGGAGTATTTCACAACTAA | 59.471 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
3210 | 7179 | 4.091549 | ACGGAGGGAGTATTTCACAACTA | 58.908 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3211 | 7180 | 2.904434 | ACGGAGGGAGTATTTCACAACT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3212 | 7181 | 3.329929 | ACGGAGGGAGTATTTCACAAC | 57.670 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
3213 | 7182 | 3.833650 | TGTACGGAGGGAGTATTTCACAA | 59.166 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
3214 | 7183 | 3.433343 | TGTACGGAGGGAGTATTTCACA | 58.567 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
3215 | 7184 | 4.667519 | ATGTACGGAGGGAGTATTTCAC | 57.332 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3216 | 7185 | 6.795144 | TTAATGTACGGAGGGAGTATTTCA | 57.205 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3222 | 7191 | 8.680903 | CGTATTATATTAATGTACGGAGGGAGT | 58.319 | 37.037 | 0.00 | 0.00 | 35.71 | 3.85 |
3223 | 7192 | 8.680903 | ACGTATTATATTAATGTACGGAGGGAG | 58.319 | 37.037 | 19.26 | 2.37 | 41.57 | 4.30 |
3224 | 7193 | 8.461222 | CACGTATTATATTAATGTACGGAGGGA | 58.539 | 37.037 | 19.26 | 0.00 | 41.57 | 4.20 |
3225 | 7194 | 8.246180 | ACACGTATTATATTAATGTACGGAGGG | 58.754 | 37.037 | 19.26 | 12.47 | 41.57 | 4.30 |
3226 | 7195 | 9.630098 | AACACGTATTATATTAATGTACGGAGG | 57.370 | 33.333 | 19.26 | 13.90 | 41.57 | 4.30 |
3229 | 7198 | 9.519905 | GCAAACACGTATTATATTAATGTACGG | 57.480 | 33.333 | 19.26 | 13.90 | 41.57 | 4.02 |
3230 | 7199 | 9.230583 | CGCAAACACGTATTATATTAATGTACG | 57.769 | 33.333 | 16.17 | 16.17 | 42.58 | 3.67 |
3231 | 7200 | 9.519905 | CCGCAAACACGTATTATATTAATGTAC | 57.480 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3232 | 7201 | 9.258826 | ACCGCAAACACGTATTATATTAATGTA | 57.741 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
3233 | 7202 | 8.145316 | ACCGCAAACACGTATTATATTAATGT | 57.855 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
3234 | 7203 | 8.996988 | AACCGCAAACACGTATTATATTAATG | 57.003 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
3235 | 7204 | 8.284693 | GGAACCGCAAACACGTATTATATTAAT | 58.715 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3236 | 7205 | 7.279536 | TGGAACCGCAAACACGTATTATATTAA | 59.720 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3237 | 7206 | 6.760298 | TGGAACCGCAAACACGTATTATATTA | 59.240 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3238 | 7207 | 5.585445 | TGGAACCGCAAACACGTATTATATT | 59.415 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3239 | 7208 | 5.006941 | GTGGAACCGCAAACACGTATTATAT | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3240 | 7209 | 4.329528 | GTGGAACCGCAAACACGTATTATA | 59.670 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
3241 | 7210 | 3.125658 | GTGGAACCGCAAACACGTATTAT | 59.874 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
3242 | 7211 | 2.479656 | GTGGAACCGCAAACACGTATTA | 59.520 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
3243 | 7212 | 1.264826 | GTGGAACCGCAAACACGTATT | 59.735 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
3244 | 7213 | 0.869730 | GTGGAACCGCAAACACGTAT | 59.130 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3245 | 7214 | 2.309326 | GTGGAACCGCAAACACGTA | 58.691 | 52.632 | 0.00 | 0.00 | 0.00 | 3.57 |
3246 | 7215 | 3.103875 | GTGGAACCGCAAACACGT | 58.896 | 55.556 | 0.00 | 0.00 | 0.00 | 4.49 |
3248 | 7217 | 0.863957 | CAACGTGGAACCGCAAACAC | 60.864 | 55.000 | 5.27 | 0.00 | 0.00 | 3.32 |
3249 | 7218 | 1.429825 | CAACGTGGAACCGCAAACA | 59.570 | 52.632 | 5.27 | 0.00 | 0.00 | 2.83 |
3250 | 7219 | 1.942223 | GCAACGTGGAACCGCAAAC | 60.942 | 57.895 | 0.00 | 0.00 | 0.00 | 2.93 |
3251 | 7220 | 1.658686 | AAGCAACGTGGAACCGCAAA | 61.659 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
3252 | 7221 | 1.658686 | AAAGCAACGTGGAACCGCAA | 61.659 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3253 | 7222 | 1.658686 | AAAAGCAACGTGGAACCGCA | 61.659 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
3254 | 7223 | 1.065109 | AAAAGCAACGTGGAACCGC | 59.935 | 52.632 | 0.00 | 0.00 | 0.00 | 5.68 |
3255 | 7224 | 1.206115 | GCAAAAGCAACGTGGAACCG | 61.206 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3256 | 7225 | 0.179124 | TGCAAAAGCAACGTGGAACC | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3257 | 7226 | 1.851658 | ATGCAAAAGCAACGTGGAAC | 58.148 | 45.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3258 | 7227 | 2.593346 | AATGCAAAAGCAACGTGGAA | 57.407 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3259 | 7228 | 2.593346 | AAATGCAAAAGCAACGTGGA | 57.407 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3260 | 7229 | 2.865551 | AGAAAATGCAAAAGCAACGTGG | 59.134 | 40.909 | 0.00 | 0.00 | 0.00 | 4.94 |
3261 | 7230 | 3.551082 | TGAGAAAATGCAAAAGCAACGTG | 59.449 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
3262 | 7231 | 3.779759 | TGAGAAAATGCAAAAGCAACGT | 58.220 | 36.364 | 0.00 | 0.00 | 0.00 | 3.99 |
3263 | 7232 | 4.977741 | ATGAGAAAATGCAAAAGCAACG | 57.022 | 36.364 | 0.00 | 0.00 | 0.00 | 4.10 |
3264 | 7233 | 7.974243 | AAAAATGAGAAAATGCAAAAGCAAC | 57.026 | 28.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3285 | 7254 | 9.766277 | GACACATTTTTGCAGTTCAAATAAAAA | 57.234 | 25.926 | 0.00 | 0.00 | 43.53 | 1.94 |
3286 | 7255 | 8.939929 | TGACACATTTTTGCAGTTCAAATAAAA | 58.060 | 25.926 | 0.00 | 0.00 | 43.53 | 1.52 |
3287 | 7256 | 8.484641 | TGACACATTTTTGCAGTTCAAATAAA | 57.515 | 26.923 | 0.00 | 0.00 | 43.53 | 1.40 |
3288 | 7257 | 8.659925 | ATGACACATTTTTGCAGTTCAAATAA | 57.340 | 26.923 | 0.00 | 0.00 | 43.53 | 1.40 |
3289 | 7258 | 9.926158 | ATATGACACATTTTTGCAGTTCAAATA | 57.074 | 25.926 | 0.00 | 0.00 | 43.53 | 1.40 |
3290 | 7259 | 8.836268 | ATATGACACATTTTTGCAGTTCAAAT | 57.164 | 26.923 | 0.00 | 0.00 | 43.53 | 2.32 |
3291 | 7260 | 9.926158 | ATATATGACACATTTTTGCAGTTCAAA | 57.074 | 25.926 | 0.00 | 0.00 | 42.50 | 2.69 |
3317 | 7286 | 9.964354 | TCTGTTACTACCTCTGTACACTAATTA | 57.036 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3318 | 7287 | 8.874744 | TCTGTTACTACCTCTGTACACTAATT | 57.125 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3320 | 7289 | 9.388506 | GTATCTGTTACTACCTCTGTACACTAA | 57.611 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3321 | 7290 | 7.708322 | CGTATCTGTTACTACCTCTGTACACTA | 59.292 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
3322 | 7291 | 6.538021 | CGTATCTGTTACTACCTCTGTACACT | 59.462 | 42.308 | 0.00 | 0.00 | 0.00 | 3.55 |
3323 | 7292 | 6.314896 | ACGTATCTGTTACTACCTCTGTACAC | 59.685 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
3324 | 7293 | 6.409704 | ACGTATCTGTTACTACCTCTGTACA | 58.590 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3325 | 7294 | 6.917217 | ACGTATCTGTTACTACCTCTGTAC | 57.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.