Multiple sequence alignment - TraesCS2A01G147400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G147400 chr2A 100.000 4095 0 0 1 4095 93939259 93935165 0.000000e+00 7563
1 TraesCS2A01G147400 chr2B 91.373 2782 177 36 504 3261 146915841 146913099 0.000000e+00 3749
2 TraesCS2A01G147400 chr2B 83.367 499 51 13 6 501 146916586 146916117 2.260000e-117 433
3 TraesCS2A01G147400 chr2B 86.905 252 33 0 3610 3861 146911354 146911103 2.410000e-72 283
4 TraesCS2A01G147400 chr2D 89.037 2253 182 35 570 2782 95420954 95418727 0.000000e+00 2732
5 TraesCS2A01G147400 chr2D 95.151 598 16 7 2781 3370 95418644 95418052 0.000000e+00 931
6 TraesCS2A01G147400 chr2D 91.194 511 25 8 3592 4095 95417877 95417380 0.000000e+00 676
7 TraesCS2A01G147400 chr2D 87.344 561 64 6 1 559 95421491 95420936 1.610000e-178 636
8 TraesCS2A01G147400 chr2D 89.535 86 5 1 3449 3534 95418053 95417972 5.600000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G147400 chr2A 93935165 93939259 4094 True 7563.000000 7563 100.0000 1 4095 1 chr2A.!!$R1 4094
1 TraesCS2A01G147400 chr2B 146911103 146916586 5483 True 1488.333333 3749 87.2150 6 3861 3 chr2B.!!$R1 3855
2 TraesCS2A01G147400 chr2D 95417380 95421491 4111 True 1016.200000 2732 90.4522 1 4095 5 chr2D.!!$R1 4094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 990 1.218316 CTAACAGGACCAGCCCGTC 59.782 63.158 0.00 0.00 37.37 4.79 F
1371 1669 0.027455 CTGTTCGTTGCGCACTTTGA 59.973 50.000 11.12 2.19 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2576 2889 1.351017 CTAGGAAAGGCACAGGGTCAA 59.649 52.381 0.0 0.0 0.0 3.18 R
3165 3566 0.393077 ACAGCTTAGACAGGCACGTT 59.607 50.000 0.0 0.0 0.0 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.716794 ACATGCACATCCCAAAAACAATT 58.283 34.783 0.00 0.00 0.00 2.32
40 41 5.131784 ACATGCACATCCCAAAAACAATTT 58.868 33.333 0.00 0.00 0.00 1.82
41 42 6.294473 ACATGCACATCCCAAAAACAATTTA 58.706 32.000 0.00 0.00 0.00 1.40
44 46 7.432350 TGCACATCCCAAAAACAATTTATTC 57.568 32.000 0.00 0.00 0.00 1.75
46 48 7.718753 TGCACATCCCAAAAACAATTTATTCTT 59.281 29.630 0.00 0.00 0.00 2.52
97 99 1.962100 TGCATGCATGGAGAACACAAA 59.038 42.857 27.34 0.00 0.00 2.83
98 100 2.563620 TGCATGCATGGAGAACACAAAT 59.436 40.909 27.34 0.00 0.00 2.32
108 110 6.295039 TGGAGAACACAAATTTTCTCGTAC 57.705 37.500 10.17 0.77 45.95 3.67
162 164 7.665690 TGCAACAAATACCAAACATATGAGTT 58.334 30.769 10.38 0.00 0.00 3.01
164 166 9.072294 GCAACAAATACCAAACATATGAGTTAC 57.928 33.333 10.38 0.00 0.00 2.50
174 176 8.265055 CCAAACATATGAGTTACTAGGGAAAGA 58.735 37.037 10.38 0.00 0.00 2.52
203 205 7.657336 TCCATTTTCTCACAACCTTTGATTAC 58.343 34.615 0.00 0.00 0.00 1.89
215 217 9.912634 ACAACCTTTGATTACAGAATTACAATG 57.087 29.630 0.00 0.00 0.00 2.82
252 254 6.318396 ACGTCTGAGTAATTAGAGGAAGGTAC 59.682 42.308 11.00 0.00 34.06 3.34
275 277 9.180678 GTACACCATTTATTCACAAACTTTGAG 57.819 33.333 8.55 0.56 0.00 3.02
326 329 7.588497 TGTAGCAACATATGAGTGACTAGAT 57.412 36.000 10.38 0.00 0.00 1.98
370 373 8.674607 CCACAACCTTGGAAGAATAACTATAAC 58.325 37.037 0.00 0.00 39.24 1.89
434 437 8.035165 TCTTAACTCGTGCTTTTTATATTGCA 57.965 30.769 0.00 0.00 0.00 4.08
533 809 8.397906 GTCATTTCCAGTTTATCATGAATCGAA 58.602 33.333 0.00 0.00 0.00 3.71
547 823 7.730084 TCATGAATCGAAGATTTCCAGAGTAT 58.270 34.615 0.00 0.00 45.12 2.12
618 894 1.294659 GCAGTGAGAGAAGCCCAACG 61.295 60.000 0.00 0.00 0.00 4.10
656 934 1.227089 CACGAATGAGAGCCTCGGG 60.227 63.158 0.00 0.00 36.90 5.14
698 976 1.534595 ACTGTGACGTCTCGACCTAAC 59.465 52.381 17.92 4.26 0.00 2.34
712 990 1.218316 CTAACAGGACCAGCCCGTC 59.782 63.158 0.00 0.00 37.37 4.79
724 1002 4.263572 CCCGTCCAGCCCACACAA 62.264 66.667 0.00 0.00 0.00 3.33
726 1004 2.334946 CCGTCCAGCCCACACAATG 61.335 63.158 0.00 0.00 0.00 2.82
1029 1326 0.107800 GTAAGCTCCCCGTCCCTTTC 60.108 60.000 0.00 0.00 0.00 2.62
1039 1336 2.035442 GTCCCTTTCTCCAGTGCGC 61.035 63.158 0.00 0.00 0.00 6.09
1049 1347 2.051345 CAGTGCGCGTTTTGTCCC 60.051 61.111 8.43 0.00 0.00 4.46
1050 1348 3.284449 AGTGCGCGTTTTGTCCCC 61.284 61.111 8.43 0.00 0.00 4.81
1067 1365 1.748879 CCCACGAATTCGGTGGCAT 60.749 57.895 29.79 6.69 44.95 4.40
1094 1392 2.434884 CGGCTGTGGCTGTCGAAT 60.435 61.111 0.00 0.00 39.80 3.34
1102 1400 0.965866 TGGCTGTCGAATCCTCTCGT 60.966 55.000 0.00 0.00 39.84 4.18
1128 1426 3.026630 TCACTGTTCGGATTGACTGAC 57.973 47.619 0.00 0.00 33.15 3.51
1169 1467 3.428282 GCGCGTTTCGGGGATGTT 61.428 61.111 8.43 0.00 40.12 2.71
1170 1468 2.973316 GCGCGTTTCGGGGATGTTT 61.973 57.895 8.43 0.00 40.12 2.83
1173 1471 0.388006 GCGTTTCGGGGATGTTTTGG 60.388 55.000 0.00 0.00 0.00 3.28
1205 1503 2.560981 TCGTGGCTAGATGTTGAGAACA 59.439 45.455 0.00 0.00 46.94 3.18
1207 1505 3.615110 CGTGGCTAGATGTTGAGAACAGT 60.615 47.826 0.00 0.00 45.95 3.55
1210 1508 3.686726 GGCTAGATGTTGAGAACAGTTGG 59.313 47.826 0.00 0.00 45.95 3.77
1211 1509 4.319177 GCTAGATGTTGAGAACAGTTGGT 58.681 43.478 0.00 0.00 45.95 3.67
1225 1523 5.110814 ACAGTTGGTATTTAGGCAGCATA 57.889 39.130 0.00 0.00 0.00 3.14
1233 1531 8.150827 TGGTATTTAGGCAGCATATTAGAGAT 57.849 34.615 0.00 0.00 0.00 2.75
1235 1533 8.043710 GGTATTTAGGCAGCATATTAGAGATGT 58.956 37.037 0.00 0.00 0.00 3.06
1239 1537 5.303971 AGGCAGCATATTAGAGATGTTGTC 58.696 41.667 0.00 0.00 39.57 3.18
1241 1539 4.151335 GCAGCATATTAGAGATGTTGTCGG 59.849 45.833 0.00 0.00 37.70 4.79
1244 1542 5.755375 AGCATATTAGAGATGTTGTCGGTTG 59.245 40.000 0.00 0.00 0.00 3.77
1249 1547 1.002087 GAGATGTTGTCGGTTGGTCCT 59.998 52.381 0.00 0.00 0.00 3.85
1251 1549 2.158667 AGATGTTGTCGGTTGGTCCTTT 60.159 45.455 0.00 0.00 0.00 3.11
1253 1551 0.584876 GTTGTCGGTTGGTCCTTTCG 59.415 55.000 0.00 0.00 0.00 3.46
1255 1553 0.032952 TGTCGGTTGGTCCTTTCGAG 59.967 55.000 0.00 0.00 0.00 4.04
1257 1555 0.601558 TCGGTTGGTCCTTTCGAGAG 59.398 55.000 0.00 0.00 0.00 3.20
1261 1559 2.027100 GGTTGGTCCTTTCGAGAGGATT 60.027 50.000 25.95 0.00 46.94 3.01
1262 1560 3.263261 GTTGGTCCTTTCGAGAGGATTC 58.737 50.000 25.95 20.39 46.94 2.52
1264 1562 2.761208 TGGTCCTTTCGAGAGGATTCTC 59.239 50.000 25.95 13.76 46.94 2.87
1276 1574 5.014534 AGAGGATTCTCAGCTATCTGGAT 57.985 43.478 3.21 0.00 42.34 3.41
1357 1655 4.214119 TGAGTTTGTGATAAGCAGCTGTTC 59.786 41.667 16.64 8.21 0.00 3.18
1358 1656 3.187227 AGTTTGTGATAAGCAGCTGTTCG 59.813 43.478 16.64 0.00 0.00 3.95
1360 1658 2.766313 TGTGATAAGCAGCTGTTCGTT 58.234 42.857 16.64 6.77 0.00 3.85
1361 1659 2.480037 TGTGATAAGCAGCTGTTCGTTG 59.520 45.455 16.64 0.00 0.00 4.10
1365 1663 4.312231 GCAGCTGTTCGTTGCGCA 62.312 61.111 16.64 5.66 40.05 6.09
1366 1664 2.425773 CAGCTGTTCGTTGCGCAC 60.426 61.111 11.12 4.51 0.00 5.34
1368 1666 2.180204 AGCTGTTCGTTGCGCACTT 61.180 52.632 11.12 0.00 0.00 3.16
1370 1668 1.531522 GCTGTTCGTTGCGCACTTTG 61.532 55.000 11.12 0.00 0.00 2.77
1371 1669 0.027455 CTGTTCGTTGCGCACTTTGA 59.973 50.000 11.12 2.19 0.00 2.69
1372 1670 0.660488 TGTTCGTTGCGCACTTTGAT 59.340 45.000 11.12 0.00 0.00 2.57
1373 1671 1.044725 GTTCGTTGCGCACTTTGATG 58.955 50.000 11.12 0.00 0.00 3.07
1374 1672 0.940833 TTCGTTGCGCACTTTGATGA 59.059 45.000 11.12 2.51 0.00 2.92
1375 1673 0.512518 TCGTTGCGCACTTTGATGAG 59.487 50.000 11.12 0.00 0.00 2.90
1378 1676 1.800586 GTTGCGCACTTTGATGAGAGA 59.199 47.619 11.12 0.00 0.00 3.10
1379 1677 2.391616 TGCGCACTTTGATGAGAGAT 57.608 45.000 5.66 0.00 0.00 2.75
1380 1678 2.703416 TGCGCACTTTGATGAGAGATT 58.297 42.857 5.66 0.00 0.00 2.40
1381 1679 2.417586 TGCGCACTTTGATGAGAGATTG 59.582 45.455 5.66 0.00 0.00 2.67
1382 1680 2.790468 GCGCACTTTGATGAGAGATTGC 60.790 50.000 0.30 0.00 0.00 3.56
1383 1681 2.417586 CGCACTTTGATGAGAGATTGCA 59.582 45.455 0.00 0.00 0.00 4.08
1384 1682 3.485381 CGCACTTTGATGAGAGATTGCAG 60.485 47.826 0.00 0.00 0.00 4.41
1385 1683 3.439476 GCACTTTGATGAGAGATTGCAGT 59.561 43.478 0.00 0.00 0.00 4.40
1386 1684 4.082895 GCACTTTGATGAGAGATTGCAGTT 60.083 41.667 0.00 0.00 0.00 3.16
1387 1685 5.391449 CACTTTGATGAGAGATTGCAGTTG 58.609 41.667 0.00 0.00 0.00 3.16
1388 1686 5.180680 CACTTTGATGAGAGATTGCAGTTGA 59.819 40.000 0.00 0.00 0.00 3.18
1389 1687 5.411977 ACTTTGATGAGAGATTGCAGTTGAG 59.588 40.000 0.00 0.00 0.00 3.02
1396 1694 4.973168 AGAGATTGCAGTTGAGTTAACCA 58.027 39.130 0.88 0.00 40.24 3.67
1401 1699 3.146066 TGCAGTTGAGTTAACCACATCC 58.854 45.455 0.88 0.00 40.24 3.51
1409 1707 4.202620 TGAGTTAACCACATCCCCATTTCA 60.203 41.667 0.88 0.00 0.00 2.69
1423 1721 4.037923 CCCCATTTCATATACAAGTGGTGC 59.962 45.833 6.91 0.00 30.43 5.01
1426 1724 5.357878 CCATTTCATATACAAGTGGTGCTGT 59.642 40.000 1.41 0.00 0.00 4.40
1431 1729 1.021202 TACAAGTGGTGCTGTTGTGC 58.979 50.000 0.00 0.00 35.95 4.57
1439 1737 1.586422 GTGCTGTTGTGCTCTGAGAA 58.414 50.000 9.28 0.00 0.00 2.87
1448 1746 7.312657 TGTTGTGCTCTGAGAATATGAAATC 57.687 36.000 9.28 0.00 0.00 2.17
1487 1785 1.279271 GTACACCTCCAAGTGGATGCT 59.721 52.381 0.00 0.00 44.46 3.79
1501 1799 1.681166 GGATGCTCTTGTGCCTGTGAT 60.681 52.381 0.00 0.00 0.00 3.06
1517 1815 5.351740 GCCTGTGATAAGTGTTAGAAGTTCC 59.648 44.000 0.00 0.00 0.00 3.62
1535 1833 9.220767 AGAAGTTCCTATGTGATTTTTCAGTAC 57.779 33.333 0.00 0.00 0.00 2.73
1612 1913 2.091555 TGTAGCCTTTGGGTTTTGACCT 60.092 45.455 0.00 0.00 34.28 3.85
1753 2054 6.245408 TCTACAGGTTAGCAATGGATGTTTT 58.755 36.000 0.00 0.00 0.00 2.43
1767 2068 6.084326 TGGATGTTTTCTTTGGTTTAGCTC 57.916 37.500 0.00 0.00 0.00 4.09
1801 2102 3.274288 GTGGAAGCAGAGGAATAACCAG 58.726 50.000 0.00 0.00 42.04 4.00
1928 2230 1.671054 GCCTCTGCGTTGGTTAGCA 60.671 57.895 0.00 0.00 41.55 3.49
1941 2243 6.468000 GCGTTGGTTAGCATTTGAACTTATAC 59.532 38.462 0.00 0.00 0.00 1.47
2052 2354 3.997021 CACAACCACTGATCAAGGTACTC 59.003 47.826 17.28 0.00 38.49 2.59
2054 2356 4.248859 CAACCACTGATCAAGGTACTCTG 58.751 47.826 17.28 9.87 38.49 3.35
2057 2359 5.084519 ACCACTGATCAAGGTACTCTGTTA 58.915 41.667 15.85 0.00 38.49 2.41
2074 2376 6.093771 ACTCTGTTACAGTACCTCAATCTACG 59.906 42.308 12.41 0.00 32.61 3.51
2078 2380 4.308899 ACAGTACCTCAATCTACGATGC 57.691 45.455 0.00 0.00 0.00 3.91
2118 2427 5.877564 TCTGTTATGTCTTGTGTGTTGTTGA 59.122 36.000 0.00 0.00 0.00 3.18
2119 2428 5.874831 TGTTATGTCTTGTGTGTTGTTGAC 58.125 37.500 0.00 0.00 0.00 3.18
2120 2429 5.645929 TGTTATGTCTTGTGTGTTGTTGACT 59.354 36.000 0.00 0.00 0.00 3.41
2121 2430 6.150307 TGTTATGTCTTGTGTGTTGTTGACTT 59.850 34.615 0.00 0.00 0.00 3.01
2122 2431 4.418013 TGTCTTGTGTGTTGTTGACTTG 57.582 40.909 0.00 0.00 0.00 3.16
2123 2432 3.818210 TGTCTTGTGTGTTGTTGACTTGT 59.182 39.130 0.00 0.00 0.00 3.16
2124 2433 4.277174 TGTCTTGTGTGTTGTTGACTTGTT 59.723 37.500 0.00 0.00 0.00 2.83
2125 2434 5.470437 TGTCTTGTGTGTTGTTGACTTGTTA 59.530 36.000 0.00 0.00 0.00 2.41
2189 2499 3.425359 CGAAGTTGCTTTCTACCAGCATG 60.425 47.826 0.00 0.00 46.62 4.06
2264 2575 7.856145 ACATAGAAGTTGCTTAGAGATTTGG 57.144 36.000 0.00 0.00 0.00 3.28
2270 2581 8.540388 AGAAGTTGCTTAGAGATTTGGTATGTA 58.460 33.333 0.00 0.00 0.00 2.29
2298 2609 1.000938 GCTGGTTTCTTCAGGCACTTG 60.001 52.381 0.00 0.00 34.60 3.16
2305 2616 5.472137 GGTTTCTTCAGGCACTTGTAATGTA 59.528 40.000 0.00 0.00 34.60 2.29
2318 2629 9.151471 GCACTTGTAATGTATCAGTTCTTAGAA 57.849 33.333 0.00 0.00 0.00 2.10
2327 2638 8.846943 TGTATCAGTTCTTAGAAATCTTGCAA 57.153 30.769 0.00 0.00 0.00 4.08
2351 2662 4.686191 AGAGAGGCATGATTTCTGTAGG 57.314 45.455 0.00 0.00 0.00 3.18
2352 2663 3.137533 GAGAGGCATGATTTCTGTAGGC 58.862 50.000 0.00 0.00 0.00 3.93
2395 2706 7.220740 TCGTGATGCTTATTATGTTTATGGGA 58.779 34.615 0.00 0.00 0.00 4.37
2576 2889 5.964958 CATCCCTAGTGATGTTTGTTTGT 57.035 39.130 7.01 0.00 37.85 2.83
2604 2918 2.642807 TGTGCCTTTCCTAGCTTACCTT 59.357 45.455 0.00 0.00 0.00 3.50
2613 2927 7.119407 CCTTTCCTAGCTTACCTTCAACTAAAC 59.881 40.741 0.00 0.00 0.00 2.01
2752 3066 0.178873 ACAGGGGTGGACTGGTATGT 60.179 55.000 0.00 0.00 40.23 2.29
2782 3096 5.604010 GCATTTGCATACCTCTGATCTAC 57.396 43.478 0.00 0.00 41.59 2.59
2783 3181 5.059161 GCATTTGCATACCTCTGATCTACA 58.941 41.667 0.00 0.00 41.59 2.74
3129 3530 2.831284 GGTGCGGTGTGGTTGGTT 60.831 61.111 0.00 0.00 0.00 3.67
3218 3620 5.784177 TGTCTTCTGAATCTGGAACTACAC 58.216 41.667 0.00 0.00 0.00 2.90
3321 3725 5.121768 ACTGCGAGTGATGTTGGTTTTATAC 59.878 40.000 0.00 0.00 0.00 1.47
3369 3835 2.946990 TCTGCATTGACGATTCATGCAT 59.053 40.909 13.78 0.00 41.40 3.96
3370 3836 3.379057 TCTGCATTGACGATTCATGCATT 59.621 39.130 13.78 0.00 41.40 3.56
3371 3837 3.440228 TGCATTGACGATTCATGCATTG 58.560 40.909 0.00 0.00 39.38 2.82
3380 3846 5.976586 ACGATTCATGCATTGTTGTTTTTG 58.023 33.333 0.00 0.00 0.00 2.44
3389 3855 4.142730 GCATTGTTGTTTTTGCACTTGGAA 60.143 37.500 0.00 0.00 35.22 3.53
3403 3869 4.260743 GCACTTGGAAAAACATTTTGCTCC 60.261 41.667 8.24 4.25 31.00 4.70
3405 3871 2.478831 TGGAAAAACATTTTGCTCCGC 58.521 42.857 8.24 0.00 32.33 5.54
3408 3874 3.673338 GGAAAAACATTTTGCTCCGCTAC 59.327 43.478 0.57 0.00 0.00 3.58
3455 5317 3.119245 GCTGTGTGATGGCAGATCAAAAT 60.119 43.478 0.00 0.00 34.87 1.82
3468 5330 5.142265 CAGATCAAAATGATAATCGGCACG 58.858 41.667 0.00 0.00 46.38 5.34
3517 5381 7.891782 ACGAGTACAAAATCATTACACATACG 58.108 34.615 0.00 0.00 0.00 3.06
3526 5390 9.805966 AAAATCATTACACATACGCATATAACG 57.194 29.630 0.00 0.00 0.00 3.18
3529 5393 7.140048 TCATTACACATACGCATATAACGTGA 58.860 34.615 12.85 0.00 44.79 4.35
3534 5398 6.581166 ACACATACGCATATAACGTGACATAG 59.419 38.462 12.85 3.21 44.79 2.23
3535 5399 6.581166 CACATACGCATATAACGTGACATAGT 59.419 38.462 12.85 0.00 44.79 2.12
3541 5427 6.567132 CGCATATAACGTGACATAGTAGTGGA 60.567 42.308 0.00 0.00 0.00 4.02
3549 5435 8.644318 ACGTGACATAGTAGTGGAAATAAATC 57.356 34.615 0.00 0.00 0.00 2.17
3551 5437 8.755941 CGTGACATAGTAGTGGAAATAAATCAG 58.244 37.037 0.00 0.00 0.00 2.90
3552 5438 9.601217 GTGACATAGTAGTGGAAATAAATCAGT 57.399 33.333 0.00 0.00 0.00 3.41
3574 5492 4.510038 ACAGGTACAGTACACCTTTACG 57.490 45.455 12.89 0.00 44.18 3.18
3575 5493 4.144297 ACAGGTACAGTACACCTTTACGA 58.856 43.478 12.89 0.00 44.18 3.43
3576 5494 4.768968 ACAGGTACAGTACACCTTTACGAT 59.231 41.667 12.89 0.00 44.18 3.73
3577 5495 5.945784 ACAGGTACAGTACACCTTTACGATA 59.054 40.000 12.89 0.00 44.18 2.92
3578 5496 6.434028 ACAGGTACAGTACACCTTTACGATAA 59.566 38.462 12.89 0.00 44.18 1.75
3579 5497 7.123247 ACAGGTACAGTACACCTTTACGATAAT 59.877 37.037 12.89 0.00 44.18 1.28
3580 5498 8.623903 CAGGTACAGTACACCTTTACGATAATA 58.376 37.037 12.89 0.00 44.18 0.98
3581 5499 9.189156 AGGTACAGTACACCTTTACGATAATAA 57.811 33.333 12.89 0.00 44.18 1.40
3582 5500 9.971922 GGTACAGTACACCTTTACGATAATAAT 57.028 33.333 12.89 0.00 32.98 1.28
3780 5698 4.324991 GTCGGCCCCGGACTTGTT 62.325 66.667 0.73 0.00 40.25 2.83
3843 5761 4.164087 TGACACGGCCACCACGTT 62.164 61.111 2.24 0.00 43.58 3.99
3879 5797 2.910482 CGTAATTGAACACTGCATGCAC 59.090 45.455 18.46 7.35 0.00 4.57
3881 5799 3.671008 AATTGAACACTGCATGCACAT 57.329 38.095 18.46 4.89 0.00 3.21
3887 5805 0.452987 CACTGCATGCACATGTACCC 59.547 55.000 18.46 0.00 40.80 3.69
3888 5806 0.038021 ACTGCATGCACATGTACCCA 59.962 50.000 18.46 0.00 40.80 4.51
3889 5807 1.175654 CTGCATGCACATGTACCCAA 58.824 50.000 18.46 0.00 40.80 4.12
3900 5818 1.529226 TGTACCCAACAAATCCGCAG 58.471 50.000 0.00 0.00 34.29 5.18
3927 5846 3.034721 ACCACAATTTTCATGCAGCAG 57.965 42.857 0.00 0.00 0.00 4.24
3928 5847 2.289195 ACCACAATTTTCATGCAGCAGG 60.289 45.455 0.00 0.00 0.00 4.85
3955 5874 5.102313 CGATCCATGTATGTATGCACGTAT 58.898 41.667 0.00 0.00 0.00 3.06
3956 5875 5.576774 CGATCCATGTATGTATGCACGTATT 59.423 40.000 0.00 0.00 0.00 1.89
3957 5876 6.090763 CGATCCATGTATGTATGCACGTATTT 59.909 38.462 0.00 0.00 0.00 1.40
3958 5877 7.274686 CGATCCATGTATGTATGCACGTATTTA 59.725 37.037 0.00 0.00 0.00 1.40
3959 5878 8.840833 ATCCATGTATGTATGCACGTATTTAA 57.159 30.769 0.00 0.00 0.00 1.52
3960 5879 8.664211 TCCATGTATGTATGCACGTATTTAAA 57.336 30.769 0.00 0.00 0.00 1.52
3962 5887 9.891828 CCATGTATGTATGCACGTATTTAAATT 57.108 29.630 5.91 0.00 0.00 1.82
3974 5899 9.401873 GCACGTATTTAAATTAAGGAAAACTGT 57.598 29.630 5.91 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.222872 AGAATAAATTGTTTTTGGGATGTGCA 58.777 30.769 0.00 0.00 0.00 4.57
70 72 6.090783 GTGTTCTCCATGCATGCATATATTG 58.909 40.000 31.73 20.63 34.91 1.90
77 79 1.618487 TTGTGTTCTCCATGCATGCA 58.382 45.000 25.04 25.04 0.00 3.96
79 81 5.929992 AGAAAATTTGTGTTCTCCATGCATG 59.070 36.000 20.19 20.19 27.52 4.06
98 100 9.430623 TGATTTGATCTTGTATGTACGAGAAAA 57.569 29.630 12.78 10.43 46.62 2.29
164 166 9.061435 GTGAGAAAATGGAATATCTTTCCCTAG 57.939 37.037 2.11 0.00 37.79 3.02
174 176 8.421249 TCAAAGGTTGTGAGAAAATGGAATAT 57.579 30.769 0.00 0.00 0.00 1.28
203 205 8.479280 CGTTTTGGAAACTTCATTGTAATTCTG 58.521 33.333 2.53 0.00 0.00 3.02
215 217 4.877323 ACTCAGACGTTTTGGAAACTTC 57.123 40.909 0.00 2.84 0.00 3.01
252 254 7.920151 TCACTCAAAGTTTGTGAATAAATGGTG 59.080 33.333 21.24 8.22 37.71 4.17
303 305 7.652727 TCATCTAGTCACTCATATGTTGCTAC 58.347 38.462 1.90 0.00 0.00 3.58
483 486 9.232473 GACATTTCTAACTTCCATTAAAGAGGT 57.768 33.333 0.00 0.00 0.00 3.85
511 762 8.737168 ATCTTCGATTCATGATAAACTGGAAA 57.263 30.769 0.00 0.00 0.00 3.13
517 768 8.830580 TCTGGAAATCTTCGATTCATGATAAAC 58.169 33.333 0.00 0.00 0.00 2.01
518 769 8.962884 TCTGGAAATCTTCGATTCATGATAAA 57.037 30.769 0.00 0.00 0.00 1.40
521 797 6.590068 ACTCTGGAAATCTTCGATTCATGAT 58.410 36.000 0.00 0.00 0.00 2.45
523 799 7.959689 ATACTCTGGAAATCTTCGATTCATG 57.040 36.000 0.00 0.00 0.00 3.07
530 806 8.798748 AACGTAATATACTCTGGAAATCTTCG 57.201 34.615 0.00 0.00 0.00 3.79
575 851 9.482627 TGCGAAATGTTTTGAAAAACCTAATAT 57.517 25.926 14.37 0.72 45.82 1.28
581 857 5.062809 TCACTGCGAAATGTTTTGAAAAACC 59.937 36.000 14.37 1.18 45.82 3.27
585 861 5.065859 TCTCTCACTGCGAAATGTTTTGAAA 59.934 36.000 0.00 0.00 0.00 2.69
618 894 4.476752 TACGGCCCACCAATCGCC 62.477 66.667 0.00 0.00 39.41 5.54
624 900 4.302509 CGTGTGTACGGCCCACCA 62.303 66.667 7.99 0.00 46.23 4.17
634 910 1.132453 CGAGGCTCTCATTCGTGTGTA 59.868 52.381 13.50 0.00 0.00 2.90
656 934 2.256591 CCCGTGCTGATGCTATGGC 61.257 63.158 0.00 0.00 40.48 4.40
678 956 1.534595 GTTAGGTCGAGACGTCACAGT 59.465 52.381 19.50 0.00 0.00 3.55
712 990 3.751246 CGGCATTGTGTGGGCTGG 61.751 66.667 0.00 0.00 0.00 4.85
866 1163 2.994995 TGCGGGAGAAGGAAGCGA 60.995 61.111 0.00 0.00 0.00 4.93
909 1206 1.299392 CGGATGATTCAGCGAGCGA 60.299 57.895 0.00 0.00 0.00 4.93
955 1252 2.442999 CGCTTCTCGTCTGCAGCAG 61.443 63.158 17.10 17.10 32.17 4.24
1029 1326 1.082756 GACAAAACGCGCACTGGAG 60.083 57.895 5.73 0.00 0.00 3.86
1039 1336 0.955905 AATTCGTGGGGGACAAAACG 59.044 50.000 0.00 0.00 37.38 3.60
1049 1347 1.714899 GATGCCACCGAATTCGTGGG 61.715 60.000 31.87 28.08 39.32 4.61
1050 1348 1.721487 GATGCCACCGAATTCGTGG 59.279 57.895 29.44 29.44 40.72 4.94
1124 1422 1.961277 GTGGCGACCAACCAGTCAG 60.961 63.158 0.00 0.00 38.04 3.51
1128 1426 4.619227 ACCGTGGCGACCAACCAG 62.619 66.667 0.00 0.00 38.04 4.00
1165 1463 3.813166 ACGAAATCGACACTCCAAAACAT 59.187 39.130 10.16 0.00 43.02 2.71
1169 1467 2.139917 CCACGAAATCGACACTCCAAA 58.860 47.619 10.16 0.00 43.02 3.28
1170 1468 1.790755 CCACGAAATCGACACTCCAA 58.209 50.000 10.16 0.00 43.02 3.53
1173 1471 2.159421 TCTAGCCACGAAATCGACACTC 60.159 50.000 10.16 0.00 43.02 3.51
1205 1503 7.745717 TCTAATATGCTGCCTAAATACCAACT 58.254 34.615 0.00 0.00 0.00 3.16
1207 1505 7.973402 TCTCTAATATGCTGCCTAAATACCAA 58.027 34.615 0.00 0.00 0.00 3.67
1210 1508 9.442047 AACATCTCTAATATGCTGCCTAAATAC 57.558 33.333 0.00 0.00 0.00 1.89
1211 1509 9.440773 CAACATCTCTAATATGCTGCCTAAATA 57.559 33.333 0.00 0.00 0.00 1.40
1225 1523 4.504858 GACCAACCGACAACATCTCTAAT 58.495 43.478 0.00 0.00 0.00 1.73
1233 1531 1.670791 GAAAGGACCAACCGACAACA 58.329 50.000 0.00 0.00 44.74 3.33
1235 1533 0.464870 TCGAAAGGACCAACCGACAA 59.535 50.000 0.00 0.00 44.74 3.18
1239 1537 0.389948 CCTCTCGAAAGGACCAACCG 60.390 60.000 0.00 0.00 44.74 4.44
1255 1553 6.606796 TCATATCCAGATAGCTGAGAATCCTC 59.393 42.308 10.19 0.00 45.17 3.71
1257 1555 6.788598 TCATATCCAGATAGCTGAGAATCC 57.211 41.667 10.19 0.00 45.17 3.01
1265 1563 9.814899 CGAAGAATAAATCATATCCAGATAGCT 57.185 33.333 0.00 0.00 0.00 3.32
1266 1564 9.039870 CCGAAGAATAAATCATATCCAGATAGC 57.960 37.037 0.00 0.00 0.00 2.97
1290 1588 6.798315 TCGAACTCTAAATCCTAGATACCG 57.202 41.667 0.00 0.00 0.00 4.02
1357 1655 0.512518 TCTCATCAAAGTGCGCAACG 59.487 50.000 14.00 0.02 0.00 4.10
1358 1656 1.800586 TCTCTCATCAAAGTGCGCAAC 59.199 47.619 14.00 6.79 0.00 4.17
1360 1658 2.391616 ATCTCTCATCAAAGTGCGCA 57.608 45.000 5.66 5.66 0.00 6.09
1361 1659 2.790468 GCAATCTCTCATCAAAGTGCGC 60.790 50.000 0.00 0.00 0.00 6.09
1362 1660 2.417586 TGCAATCTCTCATCAAAGTGCG 59.582 45.455 0.00 0.00 33.48 5.34
1365 1663 5.311265 TCAACTGCAATCTCTCATCAAAGT 58.689 37.500 0.00 0.00 0.00 2.66
1366 1664 5.411977 ACTCAACTGCAATCTCTCATCAAAG 59.588 40.000 0.00 0.00 0.00 2.77
1368 1666 4.903054 ACTCAACTGCAATCTCTCATCAA 58.097 39.130 0.00 0.00 0.00 2.57
1370 1668 6.183360 GGTTAACTCAACTGCAATCTCTCATC 60.183 42.308 5.42 0.00 37.30 2.92
1371 1669 5.645497 GGTTAACTCAACTGCAATCTCTCAT 59.355 40.000 5.42 0.00 37.30 2.90
1372 1670 4.997395 GGTTAACTCAACTGCAATCTCTCA 59.003 41.667 5.42 0.00 37.30 3.27
1373 1671 4.997395 TGGTTAACTCAACTGCAATCTCTC 59.003 41.667 5.42 0.00 37.30 3.20
1374 1672 4.757149 GTGGTTAACTCAACTGCAATCTCT 59.243 41.667 5.42 0.00 37.30 3.10
1375 1673 4.515191 TGTGGTTAACTCAACTGCAATCTC 59.485 41.667 5.42 0.00 37.30 2.75
1378 1676 4.218417 GGATGTGGTTAACTCAACTGCAAT 59.782 41.667 5.42 0.00 37.30 3.56
1379 1677 3.568007 GGATGTGGTTAACTCAACTGCAA 59.432 43.478 5.42 0.00 37.30 4.08
1380 1678 3.146066 GGATGTGGTTAACTCAACTGCA 58.854 45.455 5.42 0.00 37.30 4.41
1381 1679 2.488153 GGGATGTGGTTAACTCAACTGC 59.512 50.000 5.42 0.00 37.30 4.40
1382 1680 3.081804 GGGGATGTGGTTAACTCAACTG 58.918 50.000 5.42 0.00 37.30 3.16
1383 1681 2.714250 TGGGGATGTGGTTAACTCAACT 59.286 45.455 5.42 0.00 37.30 3.16
1384 1682 3.149005 TGGGGATGTGGTTAACTCAAC 57.851 47.619 5.42 4.64 36.32 3.18
1385 1683 4.396357 AATGGGGATGTGGTTAACTCAA 57.604 40.909 5.42 0.00 0.00 3.02
1386 1684 4.202620 TGAAATGGGGATGTGGTTAACTCA 60.203 41.667 5.42 6.07 0.00 3.41
1387 1685 4.340617 TGAAATGGGGATGTGGTTAACTC 58.659 43.478 5.42 0.28 0.00 3.01
1388 1686 4.396357 TGAAATGGGGATGTGGTTAACT 57.604 40.909 5.42 0.00 0.00 2.24
1389 1687 6.976934 ATATGAAATGGGGATGTGGTTAAC 57.023 37.500 0.00 0.00 0.00 2.01
1396 1694 6.070656 CCACTTGTATATGAAATGGGGATGT 58.929 40.000 0.00 0.00 0.00 3.06
1401 1699 4.889409 AGCACCACTTGTATATGAAATGGG 59.111 41.667 2.89 0.00 0.00 4.00
1409 1707 3.440173 GCACAACAGCACCACTTGTATAT 59.560 43.478 0.00 0.00 0.00 0.86
1423 1721 6.732531 TTTCATATTCTCAGAGCACAACAG 57.267 37.500 0.00 0.00 0.00 3.16
1426 1724 6.036408 CACGATTTCATATTCTCAGAGCACAA 59.964 38.462 0.00 0.00 0.00 3.33
1431 1729 7.943413 ACATCACGATTTCATATTCTCAGAG 57.057 36.000 0.00 0.00 0.00 3.35
1448 1746 6.247903 GTGTACCACATGATTAAACATCACG 58.752 40.000 0.00 0.00 34.08 4.35
1487 1785 3.769739 ACACTTATCACAGGCACAAGA 57.230 42.857 0.00 0.00 0.00 3.02
1527 1825 7.074653 AGAAGGGTAATGACTTGTACTGAAA 57.925 36.000 0.00 0.00 0.00 2.69
1535 1833 6.153680 ACTCAGACTAGAAGGGTAATGACTTG 59.846 42.308 0.00 0.00 0.00 3.16
1591 1891 2.312390 GGTCAAAACCCAAAGGCTACA 58.688 47.619 0.00 0.00 39.93 2.74
1612 1913 5.359576 ACAGAAACCACATAGCAAAGAACAA 59.640 36.000 0.00 0.00 0.00 2.83
1753 2054 5.048846 AGTCCAAAGAGCTAAACCAAAGA 57.951 39.130 0.00 0.00 0.00 2.52
1767 2068 2.430332 TGCTTCCACCAAAAGTCCAAAG 59.570 45.455 0.00 0.00 0.00 2.77
1801 2102 9.928236 GTATTCAAAAGATCAATCAGTTAGAGC 57.072 33.333 0.00 0.00 0.00 4.09
1941 2243 7.980662 AGTGAGTGAATAGATCAAATGACTGAG 59.019 37.037 0.00 0.00 40.50 3.35
2052 2354 6.432607 TCGTAGATTGAGGTACTGTAACAG 57.567 41.667 5.55 0.00 41.55 3.16
2054 2356 5.686397 GCATCGTAGATTGAGGTACTGTAAC 59.314 44.000 0.00 0.00 45.12 2.50
2057 2359 3.699538 TGCATCGTAGATTGAGGTACTGT 59.300 43.478 0.00 0.00 45.12 3.55
2118 2427 3.120792 CACTGTGCAGTACGTAACAAGT 58.879 45.455 4.37 1.19 40.20 3.16
2119 2428 2.096909 GCACTGTGCAGTACGTAACAAG 60.097 50.000 26.70 0.00 44.26 3.16
2120 2429 1.862201 GCACTGTGCAGTACGTAACAA 59.138 47.619 26.70 0.00 44.26 2.83
2121 2430 1.493772 GCACTGTGCAGTACGTAACA 58.506 50.000 26.70 0.00 44.26 2.41
2189 2499 9.170584 GAAGTACTAAAATCAACTTGAAAGTGC 57.829 33.333 0.00 2.26 39.66 4.40
2264 2575 8.585881 TGAAGAAACCAGCCTCTATATACATAC 58.414 37.037 0.00 0.00 0.00 2.39
2270 2581 4.202409 GCCTGAAGAAACCAGCCTCTATAT 60.202 45.833 0.00 0.00 0.00 0.86
2305 2616 7.992754 AGTTGCAAGATTTCTAAGAACTGAT 57.007 32.000 0.00 0.00 0.00 2.90
2318 2629 3.988976 TGCCTCTCTAGTTGCAAGATT 57.011 42.857 0.00 0.00 0.00 2.40
2327 2638 5.304101 CCTACAGAAATCATGCCTCTCTAGT 59.696 44.000 0.00 0.00 0.00 2.57
2351 2662 9.110617 CATCACGAAAATCATAATATCACTTGC 57.889 33.333 0.00 0.00 0.00 4.01
2352 2663 9.110617 GCATCACGAAAATCATAATATCACTTG 57.889 33.333 0.00 0.00 0.00 3.16
2395 2706 8.362639 TGCTGAAGCTCTAGAAAATTTTGAAAT 58.637 29.630 8.47 0.00 42.66 2.17
2400 2711 7.392673 TCAGATGCTGAAGCTCTAGAAAATTTT 59.607 33.333 2.28 2.28 37.57 1.82
2403 2714 5.987098 TCAGATGCTGAAGCTCTAGAAAAT 58.013 37.500 3.61 0.00 37.57 1.82
2576 2889 1.351017 CTAGGAAAGGCACAGGGTCAA 59.649 52.381 0.00 0.00 0.00 3.18
2604 2918 7.074653 ACCAAACAGGAGATAGTTTAGTTGA 57.925 36.000 0.00 0.00 41.22 3.18
2770 3084 4.223700 TGCAGAAACATGTAGATCAGAGGT 59.776 41.667 0.00 0.00 0.00 3.85
2782 3096 7.918643 ACTTAACCAATTTTTGCAGAAACATG 58.081 30.769 4.29 7.35 0.00 3.21
2783 3181 8.397148 CAACTTAACCAATTTTTGCAGAAACAT 58.603 29.630 4.29 0.00 0.00 2.71
3126 3527 3.244249 ACCAAGAGTACAGCTCAAGAACC 60.244 47.826 0.00 0.00 46.47 3.62
3127 3528 3.996480 ACCAAGAGTACAGCTCAAGAAC 58.004 45.455 0.00 0.00 46.47 3.01
3128 3529 4.100963 TCAACCAAGAGTACAGCTCAAGAA 59.899 41.667 0.00 0.00 46.47 2.52
3129 3530 3.641436 TCAACCAAGAGTACAGCTCAAGA 59.359 43.478 0.00 0.00 46.47 3.02
3165 3566 0.393077 ACAGCTTAGACAGGCACGTT 59.607 50.000 0.00 0.00 0.00 3.99
3166 3567 0.393077 AACAGCTTAGACAGGCACGT 59.607 50.000 0.00 0.00 0.00 4.49
3321 3725 0.883833 AAAGTTGGCCAATGCTCGAG 59.116 50.000 23.66 8.45 37.74 4.04
3369 3835 6.202226 GTTTTTCCAAGTGCAAAAACAACAA 58.798 32.000 15.27 0.00 45.62 2.83
3370 3836 5.752712 GTTTTTCCAAGTGCAAAAACAACA 58.247 33.333 15.27 0.00 45.62 3.33
3380 3846 4.260743 GGAGCAAAATGTTTTTCCAAGTGC 60.261 41.667 4.75 0.00 30.82 4.40
3419 5253 2.142761 ACAGCTGAGGACCTGTGCA 61.143 57.895 23.35 0.36 40.55 4.57
3515 5379 6.140786 CACTACTATGTCACGTTATATGCGT 58.859 40.000 0.00 2.02 43.90 5.24
3516 5380 5.567915 CCACTACTATGTCACGTTATATGCG 59.432 44.000 0.00 0.87 0.00 4.73
3517 5381 6.675026 TCCACTACTATGTCACGTTATATGC 58.325 40.000 0.00 0.00 0.00 3.14
3526 5390 9.601217 ACTGATTTATTTCCACTACTATGTCAC 57.399 33.333 0.00 0.00 0.00 3.67
3534 5398 9.310716 GTACCTGTACTGATTTATTTCCACTAC 57.689 37.037 0.60 0.00 33.45 2.73
3535 5399 9.038072 TGTACCTGTACTGATTTATTTCCACTA 57.962 33.333 8.75 0.00 37.00 2.74
3541 5427 9.649167 GTGTACTGTACCTGTACTGATTTATTT 57.351 33.333 14.91 0.80 38.81 1.40
3556 5442 9.971922 ATTATTATCGTAAAGGTGTACTGTACC 57.028 33.333 14.91 3.57 36.68 3.34
3588 5506 9.022915 CCGTGTGTTGATTATTATCGTAAAGTA 57.977 33.333 0.00 0.00 33.23 2.24
3589 5507 7.010738 CCCGTGTGTTGATTATTATCGTAAAGT 59.989 37.037 0.00 0.00 33.23 2.66
3590 5508 7.342194 CCCGTGTGTTGATTATTATCGTAAAG 58.658 38.462 0.00 0.00 33.23 1.85
3609 5527 2.030562 CAAGTTCTCGGCCCGTGT 59.969 61.111 1.63 0.00 0.00 4.49
3612 5530 0.748450 TATACCAAGTTCTCGGCCCG 59.252 55.000 0.00 0.00 0.00 6.13
3826 5744 4.164087 AACGTGGTGGCCGTGTCA 62.164 61.111 0.00 0.00 38.77 3.58
3862 5780 2.297880 ACATGTGCATGCAGTGTTCAAT 59.702 40.909 23.41 5.15 42.39 2.57
3879 5797 1.815613 TGCGGATTTGTTGGGTACATG 59.184 47.619 0.00 0.00 36.44 3.21
3881 5799 1.529226 CTGCGGATTTGTTGGGTACA 58.471 50.000 0.00 0.00 34.12 2.90
3887 5805 0.527113 TGATGCCTGCGGATTTGTTG 59.473 50.000 0.00 0.00 0.00 3.33
3888 5806 1.067635 GTTGATGCCTGCGGATTTGTT 60.068 47.619 0.00 0.00 0.00 2.83
3889 5807 0.527565 GTTGATGCCTGCGGATTTGT 59.472 50.000 0.00 0.00 0.00 2.83
3900 5818 3.125658 GCATGAAAATTGTGGTTGATGCC 59.874 43.478 0.00 0.00 30.90 4.40
3927 5846 3.310774 GCATACATACATGGATCGATGCC 59.689 47.826 16.74 10.30 33.88 4.40
3928 5847 3.934579 TGCATACATACATGGATCGATGC 59.065 43.478 20.15 20.15 39.08 3.91
3930 5849 4.176271 CGTGCATACATACATGGATCGAT 58.824 43.478 0.00 0.00 0.00 3.59
3932 5851 3.317150 ACGTGCATACATACATGGATCG 58.683 45.455 0.00 0.00 31.95 3.69
3987 5912 9.667107 CCCTCAGTTTCTAAATGTGACTAAATA 57.333 33.333 0.00 0.00 0.00 1.40
3988 5913 8.164070 ACCCTCAGTTTCTAAATGTGACTAAAT 58.836 33.333 0.00 0.00 0.00 1.40
3994 5919 5.304686 ACACCCTCAGTTTCTAAATGTGA 57.695 39.130 0.00 0.00 0.00 3.58
3995 5920 5.120208 CGTACACCCTCAGTTTCTAAATGTG 59.880 44.000 0.00 0.00 0.00 3.21
3999 5924 4.942761 ACGTACACCCTCAGTTTCTAAA 57.057 40.909 0.00 0.00 0.00 1.85
4000 5925 4.218417 GGTACGTACACCCTCAGTTTCTAA 59.782 45.833 26.02 0.00 31.91 2.10
4001 5926 3.758554 GGTACGTACACCCTCAGTTTCTA 59.241 47.826 26.02 0.00 31.91 2.10
4002 5927 2.560105 GGTACGTACACCCTCAGTTTCT 59.440 50.000 26.02 0.00 31.91 2.52
4003 5928 2.297033 TGGTACGTACACCCTCAGTTTC 59.703 50.000 26.02 5.74 37.84 2.78
4004 5929 2.318908 TGGTACGTACACCCTCAGTTT 58.681 47.619 26.02 0.00 37.84 2.66
4005 5930 1.999648 TGGTACGTACACCCTCAGTT 58.000 50.000 26.02 0.00 37.84 3.16
4006 5931 1.891150 CTTGGTACGTACACCCTCAGT 59.109 52.381 26.02 0.00 37.84 3.41
4007 5932 1.203994 CCTTGGTACGTACACCCTCAG 59.796 57.143 26.02 11.71 37.84 3.35
4008 5933 1.203038 TCCTTGGTACGTACACCCTCA 60.203 52.381 26.02 12.19 37.84 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.