Multiple sequence alignment - TraesCS2A01G147300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G147300 chr2A 100.000 2564 0 0 1 2564 93934053 93936616 0.000000e+00 4735.0
1 TraesCS2A01G147300 chr2A 89.256 121 11 2 484 603 622695783 622695664 1.590000e-32 150.0
2 TraesCS2A01G147300 chr2A 87.402 127 14 2 477 603 502330490 502330366 7.390000e-31 145.0
3 TraesCS2A01G147300 chr2D 88.603 1281 72 33 370 1616 95416637 95417877 0.000000e+00 1489.0
4 TraesCS2A01G147300 chr2D 95.151 598 16 7 1838 2427 95418052 95418644 0.000000e+00 931.0
5 TraesCS2A01G147300 chr2D 90.045 221 19 3 12 230 194797705 194797486 1.500000e-72 283.0
6 TraesCS2A01G147300 chr2D 96.403 139 5 0 2426 2564 95418727 95418865 1.980000e-56 230.0
7 TraesCS2A01G147300 chr2D 86.364 132 15 3 229 359 95416395 95416524 9.560000e-30 141.0
8 TraesCS2A01G147300 chr2D 89.535 86 5 1 1674 1759 95417972 95418053 3.490000e-19 106.0
9 TraesCS2A01G147300 chr2B 95.968 620 16 5 1947 2564 146913099 146913711 0.000000e+00 998.0
10 TraesCS2A01G147300 chr2B 89.292 579 39 14 630 1198 146910121 146910686 0.000000e+00 704.0
11 TraesCS2A01G147300 chr2B 86.905 252 33 0 1347 1598 146911103 146911354 1.500000e-72 283.0
12 TraesCS2A01G147300 chr2B 89.498 219 21 2 14 230 763962243 763962025 2.510000e-70 276.0
13 TraesCS2A01G147300 chr2B 88.393 112 8 5 274 383 146908108 146908216 2.070000e-26 130.0
14 TraesCS2A01G147300 chr2B 93.651 63 4 0 402 464 146910023 146910085 7.550000e-16 95.3
15 TraesCS2A01G147300 chr7B 90.000 230 21 2 14 241 479175120 479175349 1.930000e-76 296.0
16 TraesCS2A01G147300 chr7D 90.045 221 20 2 14 232 611158256 611158036 4.180000e-73 285.0
17 TraesCS2A01G147300 chr3B 90.610 213 17 3 14 224 81304937 81305148 1.940000e-71 279.0
18 TraesCS2A01G147300 chr3B 88.987 227 23 2 6 230 704329431 704329657 1.940000e-71 279.0
19 TraesCS2A01G147300 chr3B 89.189 222 22 2 14 233 149178964 149178743 2.510000e-70 276.0
20 TraesCS2A01G147300 chr3B 89.256 121 11 2 488 607 57638671 57638790 1.590000e-32 150.0
21 TraesCS2A01G147300 chr4B 89.545 220 21 2 13 230 529358010 529358229 6.990000e-71 278.0
22 TraesCS2A01G147300 chr1B 88.889 225 19 5 14 236 22844349 22844129 3.250000e-69 272.0
23 TraesCS2A01G147300 chr5D 84.466 206 22 8 989 1192 550646408 550646605 7.240000e-46 195.0
24 TraesCS2A01G147300 chr5D 83.575 207 25 8 989 1192 550965514 550965714 4.360000e-43 185.0
25 TraesCS2A01G147300 chr5B 83.663 202 24 6 989 1187 703268726 703268921 5.640000e-42 182.0
26 TraesCS2A01G147300 chr6B 91.379 116 9 1 488 603 228695266 228695152 9.500000e-35 158.0
27 TraesCS2A01G147300 chr1D 90.517 116 10 1 488 603 150938129 150938015 4.420000e-33 152.0
28 TraesCS2A01G147300 chr5A 86.466 133 16 2 477 609 611023311 611023181 7.390000e-31 145.0
29 TraesCS2A01G147300 chr5A 85.000 140 17 4 483 621 38997633 38997769 3.440000e-29 139.0
30 TraesCS2A01G147300 chr5A 85.000 140 17 4 483 621 39114693 39114829 3.440000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G147300 chr2A 93934053 93936616 2563 False 4735.00 4735 100.0000 1 2564 1 chr2A.!!$F1 2563
1 TraesCS2A01G147300 chr2D 95416395 95418865 2470 False 579.40 1489 91.2112 229 2564 5 chr2D.!!$F1 2335
2 TraesCS2A01G147300 chr2B 146908108 146913711 5603 False 442.06 998 90.8418 274 2564 5 chr2B.!!$F1 2290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 2492 0.319405 TTTTCGAACGGAGGGAGTCC 59.681 55.0 0.0 0.0 42.85 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2454 6256 0.178873 ACAGGGGTGGACTGGTATGT 60.179 55.0 0.0 0.0 40.23 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.974642 AGTTGATCCCCATTACTACCTCC 59.025 47.826 0.00 0.00 0.00 4.30
23 24 2.605257 TGATCCCCATTACTACCTCCG 58.395 52.381 0.00 0.00 0.00 4.63
24 25 2.090943 TGATCCCCATTACTACCTCCGT 60.091 50.000 0.00 0.00 0.00 4.69
25 26 2.077687 TCCCCATTACTACCTCCGTC 57.922 55.000 0.00 0.00 0.00 4.79
26 27 1.572415 TCCCCATTACTACCTCCGTCT 59.428 52.381 0.00 0.00 0.00 4.18
27 28 1.962100 CCCCATTACTACCTCCGTCTC 59.038 57.143 0.00 0.00 0.00 3.36
28 29 1.607628 CCCATTACTACCTCCGTCTCG 59.392 57.143 0.00 0.00 0.00 4.04
41 42 3.984508 CCGTCTCGGTGTATAAGTCAT 57.015 47.619 0.00 0.00 42.73 3.06
42 43 4.303086 CCGTCTCGGTGTATAAGTCATT 57.697 45.455 0.00 0.00 42.73 2.57
43 44 4.288531 CCGTCTCGGTGTATAAGTCATTC 58.711 47.826 0.00 0.00 42.73 2.67
44 45 4.201980 CCGTCTCGGTGTATAAGTCATTCA 60.202 45.833 0.00 0.00 42.73 2.57
45 46 4.733887 CGTCTCGGTGTATAAGTCATTCAC 59.266 45.833 0.00 0.00 34.95 3.18
46 47 4.733887 GTCTCGGTGTATAAGTCATTCACG 59.266 45.833 0.00 0.00 36.16 4.35
47 48 4.397103 TCTCGGTGTATAAGTCATTCACGT 59.603 41.667 0.00 0.00 36.16 4.49
48 49 5.585844 TCTCGGTGTATAAGTCATTCACGTA 59.414 40.000 0.00 0.00 36.16 3.57
49 50 5.813717 TCGGTGTATAAGTCATTCACGTAG 58.186 41.667 0.00 0.00 36.16 3.51
51 52 6.032094 CGGTGTATAAGTCATTCACGTAGTT 58.968 40.000 0.00 0.00 41.61 2.24
52 53 6.529125 CGGTGTATAAGTCATTCACGTAGTTT 59.471 38.462 0.00 0.00 41.61 2.66
53 54 7.062605 CGGTGTATAAGTCATTCACGTAGTTTT 59.937 37.037 0.00 0.00 41.61 2.43
54 55 9.357652 GGTGTATAAGTCATTCACGTAGTTTTA 57.642 33.333 0.00 0.00 41.61 1.52
56 57 9.577110 TGTATAAGTCATTCACGTAGTTTTAGG 57.423 33.333 0.00 0.00 41.61 2.69
57 58 9.578439 GTATAAGTCATTCACGTAGTTTTAGGT 57.422 33.333 0.00 0.00 41.61 3.08
59 60 6.780706 AGTCATTCACGTAGTTTTAGGTTG 57.219 37.500 0.00 0.00 41.61 3.77
60 61 6.518493 AGTCATTCACGTAGTTTTAGGTTGA 58.482 36.000 0.00 0.00 41.61 3.18
61 62 6.423001 AGTCATTCACGTAGTTTTAGGTTGAC 59.577 38.462 0.00 0.00 41.61 3.18
62 63 6.201425 GTCATTCACGTAGTTTTAGGTTGACA 59.799 38.462 0.00 0.00 41.61 3.58
63 64 6.762187 TCATTCACGTAGTTTTAGGTTGACAA 59.238 34.615 0.00 0.00 41.61 3.18
64 65 7.442969 TCATTCACGTAGTTTTAGGTTGACAAT 59.557 33.333 0.00 0.00 41.61 2.71
65 66 7.556733 TTCACGTAGTTTTAGGTTGACAATT 57.443 32.000 0.00 0.00 41.61 2.32
66 67 7.556733 TCACGTAGTTTTAGGTTGACAATTT 57.443 32.000 0.00 0.00 41.61 1.82
67 68 8.659925 TCACGTAGTTTTAGGTTGACAATTTA 57.340 30.769 0.00 0.00 41.61 1.40
68 69 9.107177 TCACGTAGTTTTAGGTTGACAATTTAA 57.893 29.630 0.00 0.00 41.61 1.52
69 70 9.161684 CACGTAGTTTTAGGTTGACAATTTAAC 57.838 33.333 0.00 0.00 41.61 2.01
70 71 9.112725 ACGTAGTTTTAGGTTGACAATTTAACT 57.887 29.630 0.00 0.00 37.78 2.24
194 195 9.525826 AATTTCTCAAATTGATGACCTAGAACT 57.474 29.630 0.00 0.00 39.50 3.01
196 197 9.436957 TTTCTCAAATTGATGACCTAGAACTAC 57.563 33.333 0.00 0.00 0.00 2.73
197 198 7.258441 TCTCAAATTGATGACCTAGAACTACG 58.742 38.462 0.00 0.00 0.00 3.51
198 199 5.810587 TCAAATTGATGACCTAGAACTACGC 59.189 40.000 0.00 0.00 0.00 4.42
199 200 3.416119 TTGATGACCTAGAACTACGCG 57.584 47.619 3.53 3.53 0.00 6.01
200 201 2.635714 TGATGACCTAGAACTACGCGA 58.364 47.619 15.93 0.00 0.00 5.87
201 202 3.011818 TGATGACCTAGAACTACGCGAA 58.988 45.455 15.93 0.00 0.00 4.70
202 203 3.630769 TGATGACCTAGAACTACGCGAAT 59.369 43.478 15.93 0.00 0.00 3.34
203 204 3.687572 TGACCTAGAACTACGCGAATC 57.312 47.619 15.93 5.02 0.00 2.52
204 205 3.011818 TGACCTAGAACTACGCGAATCA 58.988 45.455 15.93 0.00 0.00 2.57
205 206 3.181503 TGACCTAGAACTACGCGAATCAC 60.182 47.826 15.93 0.66 0.00 3.06
206 207 3.015327 ACCTAGAACTACGCGAATCACT 58.985 45.455 15.93 9.07 0.00 3.41
207 208 3.442977 ACCTAGAACTACGCGAATCACTT 59.557 43.478 15.93 0.00 0.00 3.16
208 209 4.637534 ACCTAGAACTACGCGAATCACTTA 59.362 41.667 15.93 0.00 0.00 2.24
209 210 5.298777 ACCTAGAACTACGCGAATCACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
210 211 6.484643 ACCTAGAACTACGCGAATCACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
211 212 6.796072 CCTAGAACTACGCGAATCACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
212 213 6.127810 AGAACTACGCGAATCACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
213 214 6.736123 AGAACTACGCGAATCACTTATACAT 58.264 36.000 15.93 0.00 0.00 2.29
214 215 6.856938 AGAACTACGCGAATCACTTATACATC 59.143 38.462 15.93 0.00 0.00 3.06
215 216 5.145059 ACTACGCGAATCACTTATACATCG 58.855 41.667 15.93 0.00 0.00 3.84
216 217 4.219143 ACGCGAATCACTTATACATCGA 57.781 40.909 15.93 0.00 32.38 3.59
217 218 4.219802 ACGCGAATCACTTATACATCGAG 58.780 43.478 15.93 0.00 36.43 4.04
218 219 4.024302 ACGCGAATCACTTATACATCGAGA 60.024 41.667 15.93 0.00 34.84 4.04
219 220 5.089411 CGCGAATCACTTATACATCGAGAT 58.911 41.667 0.00 0.00 33.00 2.75
220 221 5.002934 CGCGAATCACTTATACATCGAGATG 59.997 44.000 0.00 11.19 44.15 2.90
221 222 5.287274 GCGAATCACTTATACATCGAGATGG 59.713 44.000 16.37 2.15 42.91 3.51
222 223 6.612306 CGAATCACTTATACATCGAGATGGA 58.388 40.000 16.37 9.15 42.91 3.41
223 224 6.744993 CGAATCACTTATACATCGAGATGGAG 59.255 42.308 16.37 10.72 42.91 3.86
224 225 5.966742 TCACTTATACATCGAGATGGAGG 57.033 43.478 16.37 6.21 42.91 4.30
225 226 4.767409 TCACTTATACATCGAGATGGAGGG 59.233 45.833 16.37 9.86 42.91 4.30
226 227 4.767409 CACTTATACATCGAGATGGAGGGA 59.233 45.833 16.37 0.00 42.91 4.20
227 228 5.013547 ACTTATACATCGAGATGGAGGGAG 58.986 45.833 16.37 9.85 42.91 4.30
228 229 3.534357 ATACATCGAGATGGAGGGAGT 57.466 47.619 16.37 0.00 42.91 3.85
229 230 4.659529 ATACATCGAGATGGAGGGAGTA 57.340 45.455 16.37 0.03 42.91 2.59
230 231 2.870175 ACATCGAGATGGAGGGAGTAG 58.130 52.381 16.37 0.00 42.91 2.57
233 234 2.933573 TCGAGATGGAGGGAGTAGTTC 58.066 52.381 0.00 0.00 0.00 3.01
246 247 5.357596 AGGGAGTAGTTCTATTCGACTCAAC 59.642 44.000 0.00 0.00 38.59 3.18
255 256 1.946745 TTCGACTCAACATGCACACA 58.053 45.000 0.00 0.00 0.00 3.72
263 264 2.203466 CATGCACACACCCCACCA 60.203 61.111 0.00 0.00 0.00 4.17
271 272 1.342474 ACACACCCCACCACATCAAAA 60.342 47.619 0.00 0.00 0.00 2.44
282 283 0.593128 ACATCAAAAGCTCACCACGC 59.407 50.000 0.00 0.00 0.00 5.34
283 284 0.592637 CATCAAAAGCTCACCACGCA 59.407 50.000 0.00 0.00 0.00 5.24
284 285 0.593128 ATCAAAAGCTCACCACGCAC 59.407 50.000 0.00 0.00 0.00 5.34
285 286 1.369209 CAAAAGCTCACCACGCACG 60.369 57.895 0.00 0.00 0.00 5.34
286 287 1.817941 AAAAGCTCACCACGCACGT 60.818 52.632 0.00 0.00 0.00 4.49
287 288 0.531090 AAAAGCTCACCACGCACGTA 60.531 50.000 0.00 0.00 0.00 3.57
288 289 0.320421 AAAGCTCACCACGCACGTAT 60.320 50.000 0.00 0.00 0.00 3.06
289 290 1.014044 AAGCTCACCACGCACGTATG 61.014 55.000 0.00 0.00 0.00 2.39
290 291 1.736645 GCTCACCACGCACGTATGT 60.737 57.895 0.00 0.00 0.00 2.29
293 294 0.946700 TCACCACGCACGTATGTTGG 60.947 55.000 0.00 3.19 37.22 3.77
368 369 7.887996 AAAATTATCGAATGCAAACATGTGT 57.112 28.000 0.00 0.00 36.36 3.72
494 2379 8.836268 ATGGTCTAGTCTAGTTATTACTCTCG 57.164 38.462 6.77 0.00 35.78 4.04
497 2382 5.925397 TCTAGTCTAGTTATTACTCTCGCCG 59.075 44.000 6.77 0.00 35.78 6.46
498 2383 4.450053 AGTCTAGTTATTACTCTCGCCGT 58.550 43.478 0.00 0.00 35.78 5.68
499 2384 4.880696 AGTCTAGTTATTACTCTCGCCGTT 59.119 41.667 0.00 0.00 35.78 4.44
500 2385 5.007528 AGTCTAGTTATTACTCTCGCCGTTC 59.992 44.000 0.00 0.00 35.78 3.95
501 2386 3.062323 AGTTATTACTCTCGCCGTTCG 57.938 47.619 0.00 0.00 40.15 3.95
502 2387 2.114825 GTTATTACTCTCGCCGTTCGG 58.885 52.381 6.90 6.90 39.05 4.30
503 2388 0.664761 TATTACTCTCGCCGTTCGGG 59.335 55.000 13.16 3.71 40.87 5.14
508 2393 1.434696 TCTCGCCGTTCGGGAATAC 59.565 57.895 13.16 0.00 46.14 1.89
510 2395 0.870307 CTCGCCGTTCGGGAATACTG 60.870 60.000 13.16 0.00 42.52 2.74
511 2396 1.881252 CGCCGTTCGGGAATACTGG 60.881 63.158 13.16 0.00 38.47 4.00
514 2399 0.822164 CCGTTCGGGAATACTGGTCT 59.178 55.000 3.04 0.00 38.47 3.85
516 2401 2.428171 CCGTTCGGGAATACTGGTCTTA 59.572 50.000 3.04 0.00 38.47 2.10
517 2402 3.119029 CCGTTCGGGAATACTGGTCTTAA 60.119 47.826 3.04 0.00 38.47 1.85
518 2403 4.497300 CGTTCGGGAATACTGGTCTTAAA 58.503 43.478 0.00 0.00 0.00 1.52
519 2404 5.114081 CGTTCGGGAATACTGGTCTTAAAT 58.886 41.667 0.00 0.00 0.00 1.40
524 2412 6.328148 TCGGGAATACTGGTCTTAAATATGGT 59.672 38.462 0.00 0.00 0.00 3.55
599 2487 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
602 2490 2.830321 AGTATTTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
603 2491 2.381725 ATTTTCGAACGGAGGGAGTC 57.618 50.000 0.00 0.00 0.00 3.36
604 2492 0.319405 TTTTCGAACGGAGGGAGTCC 59.681 55.000 0.00 0.00 42.85 3.85
626 2514 9.839185 AGTCCTACATATACTTATACATGGGTT 57.161 33.333 0.00 0.00 0.00 4.11
768 2658 4.976116 CCACTTTACGCTTTCAAAAAGGAG 59.024 41.667 1.96 0.00 34.07 3.69
814 2711 9.665264 GTATATTGCAAGCAGTACTTAATTTCC 57.335 33.333 4.94 0.00 36.04 3.13
851 2748 2.421877 CTTGGCCTCACGTCACGTCT 62.422 60.000 0.00 0.00 38.32 4.18
853 2750 3.106407 GCCTCACGTCACGTCTGC 61.106 66.667 0.00 0.00 38.32 4.26
854 2751 2.335011 CCTCACGTCACGTCTGCA 59.665 61.111 0.00 0.00 38.32 4.41
855 2752 2.016704 CCTCACGTCACGTCTGCAC 61.017 63.158 0.00 0.00 38.32 4.57
856 2753 1.299089 CTCACGTCACGTCTGCACA 60.299 57.895 0.00 0.00 38.32 4.57
857 2754 1.271446 CTCACGTCACGTCTGCACAG 61.271 60.000 0.00 0.00 38.32 3.66
858 2755 2.658593 ACGTCACGTCTGCACAGC 60.659 61.111 0.00 0.00 33.69 4.40
859 2756 2.355126 CGTCACGTCTGCACAGCT 60.355 61.111 0.00 0.00 0.00 4.24
886 2783 0.935196 GGCGAGCCTATAAAACCACG 59.065 55.000 6.90 0.00 0.00 4.94
964 2871 1.895798 TCTGCTCTGTTTCTGATCGGT 59.104 47.619 0.42 0.00 0.00 4.69
967 2874 4.160439 TCTGCTCTGTTTCTGATCGGTATT 59.840 41.667 0.42 0.00 0.00 1.89
981 2888 2.033801 TCGGTATTCGGTAGCTGCTAAC 59.966 50.000 14.69 14.69 39.77 2.34
1198 3111 1.203038 TCCTTGGTACGTACACCCTCA 60.203 52.381 26.02 12.19 37.84 3.86
1208 3191 5.479124 ACGTACACCCTCAGTTTCTAAAT 57.521 39.130 0.00 0.00 0.00 1.40
1210 3193 5.221581 ACGTACACCCTCAGTTTCTAAATGT 60.222 40.000 0.00 0.00 0.00 2.71
1211 3194 5.120208 CGTACACCCTCAGTTTCTAAATGTG 59.880 44.000 0.00 0.00 0.00 3.21
1212 3195 5.304686 ACACCCTCAGTTTCTAAATGTGA 57.695 39.130 0.00 0.00 0.00 3.58
1213 3196 5.063880 ACACCCTCAGTTTCTAAATGTGAC 58.936 41.667 0.00 0.00 0.00 3.67
1214 3197 5.163195 ACACCCTCAGTTTCTAAATGTGACT 60.163 40.000 0.00 0.00 0.00 3.41
1215 3198 6.042781 ACACCCTCAGTTTCTAAATGTGACTA 59.957 38.462 0.00 0.00 0.00 2.59
1216 3199 6.934645 CACCCTCAGTTTCTAAATGTGACTAA 59.065 38.462 0.00 0.00 0.00 2.24
1217 3200 7.444183 CACCCTCAGTTTCTAAATGTGACTAAA 59.556 37.037 0.00 0.00 0.00 1.85
1218 3201 8.164070 ACCCTCAGTTTCTAAATGTGACTAAAT 58.836 33.333 0.00 0.00 0.00 1.40
1219 3202 9.667107 CCCTCAGTTTCTAAATGTGACTAAATA 57.333 33.333 0.00 0.00 0.00 1.40
1274 3454 3.317150 ACGTGCATACATACATGGATCG 58.683 45.455 0.00 0.00 31.95 3.69
1278 3458 3.934579 TGCATACATACATGGATCGATGC 59.065 43.478 20.15 20.15 39.08 3.91
1279 3459 3.310774 GCATACATACATGGATCGATGCC 59.689 47.826 16.74 10.30 33.88 4.40
1317 3518 0.527565 GTTGATGCCTGCGGATTTGT 59.472 50.000 0.00 0.00 0.00 2.83
1318 3519 1.067635 GTTGATGCCTGCGGATTTGTT 60.068 47.619 0.00 0.00 0.00 2.83
1319 3520 0.527113 TGATGCCTGCGGATTTGTTG 59.473 50.000 0.00 0.00 0.00 3.33
1325 3526 1.529226 CTGCGGATTTGTTGGGTACA 58.471 50.000 0.00 0.00 34.12 2.90
1344 3545 2.297880 ACATGTGCATGCAGTGTTCAAT 59.702 40.909 23.41 5.15 42.39 2.57
1380 3581 4.164087 AACGTGGTGGCCGTGTCA 62.164 61.111 0.00 0.00 38.77 3.58
1594 3795 0.748450 TATACCAAGTTCTCGGCCCG 59.252 55.000 0.00 0.00 0.00 6.13
1616 3817 7.342194 CCCGTGTGTTGATTATTATCGTAAAG 58.658 38.462 0.00 0.00 33.23 1.85
1617 3818 7.010738 CCCGTGTGTTGATTATTATCGTAAAGT 59.989 37.037 0.00 0.00 33.23 2.66
1618 3819 9.022915 CCGTGTGTTGATTATTATCGTAAAGTA 57.977 33.333 0.00 0.00 33.23 2.24
1650 3851 9.971922 ATTATTATCGTAAAGGTGTACTGTACC 57.028 33.333 14.91 3.57 36.68 3.34
1665 3898 9.649167 GTGTACTGTACCTGTACTGATTTATTT 57.351 33.333 14.91 0.80 38.81 1.40
1680 3935 9.601217 ACTGATTTATTTCCACTACTATGTCAC 57.399 33.333 0.00 0.00 0.00 3.67
1689 3944 6.675026 TCCACTACTATGTCACGTTATATGC 58.325 40.000 0.00 0.00 0.00 3.14
1690 3945 5.567915 CCACTACTATGTCACGTTATATGCG 59.432 44.000 0.00 0.87 0.00 4.73
1691 3946 6.140786 CACTACTATGTCACGTTATATGCGT 58.859 40.000 0.00 2.02 43.90 5.24
1787 4072 2.142761 ACAGCTGAGGACCTGTGCA 61.143 57.895 23.35 0.36 40.55 4.57
1826 5479 4.260743 GGAGCAAAATGTTTTTCCAAGTGC 60.261 41.667 4.75 0.00 30.82 4.40
1836 5489 5.752712 GTTTTTCCAAGTGCAAAAACAACA 58.247 33.333 15.27 0.00 45.62 3.33
1837 5490 6.202226 GTTTTTCCAAGTGCAAAAACAACAA 58.798 32.000 15.27 0.00 45.62 2.83
1885 5597 0.883833 AAAGTTGGCCAATGCTCGAG 59.116 50.000 23.66 8.45 37.74 4.04
1920 5632 5.986135 ACATCACTCGCAGTTATAAGATTCC 59.014 40.000 0.00 0.00 0.00 3.01
2040 5755 0.393077 AACAGCTTAGACAGGCACGT 59.607 50.000 0.00 0.00 0.00 4.49
2041 5756 0.393077 ACAGCTTAGACAGGCACGTT 59.607 50.000 0.00 0.00 0.00 3.99
2082 5797 4.380531 CAAGAGTACAGCTCAAGAACCAA 58.619 43.478 0.00 0.00 46.47 3.67
2083 5798 3.996480 AGAGTACAGCTCAAGAACCAAC 58.004 45.455 0.00 0.00 46.47 3.77
2084 5799 3.067833 GAGTACAGCTCAAGAACCAACC 58.932 50.000 0.00 0.00 43.58 3.77
2085 5800 2.438021 AGTACAGCTCAAGAACCAACCA 59.562 45.455 0.00 0.00 0.00 3.67
2423 6141 8.397148 CAACTTAACCAATTTTTGCAGAAACAT 58.603 29.630 4.29 0.00 0.00 2.71
2424 6226 7.918643 ACTTAACCAATTTTTGCAGAAACATG 58.081 30.769 4.29 7.35 0.00 3.21
2436 6238 4.223700 TGCAGAAACATGTAGATCAGAGGT 59.776 41.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.974642 GGAGGTAGTAATGGGGATCAACT 59.025 47.826 0.00 0.00 0.00 3.16
1 2 3.244112 CGGAGGTAGTAATGGGGATCAAC 60.244 52.174 0.00 0.00 0.00 3.18
2 3 2.969950 CGGAGGTAGTAATGGGGATCAA 59.030 50.000 0.00 0.00 0.00 2.57
3 4 2.090943 ACGGAGGTAGTAATGGGGATCA 60.091 50.000 0.00 0.00 0.00 2.92
4 5 2.561858 GACGGAGGTAGTAATGGGGATC 59.438 54.545 0.00 0.00 0.00 3.36
5 6 2.179424 AGACGGAGGTAGTAATGGGGAT 59.821 50.000 0.00 0.00 0.00 3.85
6 7 1.572415 AGACGGAGGTAGTAATGGGGA 59.428 52.381 0.00 0.00 0.00 4.81
7 8 1.962100 GAGACGGAGGTAGTAATGGGG 59.038 57.143 0.00 0.00 0.00 4.96
8 9 1.607628 CGAGACGGAGGTAGTAATGGG 59.392 57.143 0.00 0.00 0.00 4.00
22 23 4.733887 GTGAATGACTTATACACCGAGACG 59.266 45.833 0.00 0.00 0.00 4.18
23 24 4.733887 CGTGAATGACTTATACACCGAGAC 59.266 45.833 0.00 0.00 0.00 3.36
24 25 4.397103 ACGTGAATGACTTATACACCGAGA 59.603 41.667 0.00 0.00 0.00 4.04
25 26 4.669318 ACGTGAATGACTTATACACCGAG 58.331 43.478 0.00 0.00 0.00 4.63
26 27 4.707030 ACGTGAATGACTTATACACCGA 57.293 40.909 0.00 0.00 0.00 4.69
27 28 5.575957 ACTACGTGAATGACTTATACACCG 58.424 41.667 0.00 0.00 0.00 4.94
28 29 7.823149 AAACTACGTGAATGACTTATACACC 57.177 36.000 0.00 0.00 0.00 4.16
30 31 9.577110 CCTAAAACTACGTGAATGACTTATACA 57.423 33.333 0.00 0.00 0.00 2.29
31 32 9.578439 ACCTAAAACTACGTGAATGACTTATAC 57.422 33.333 0.00 0.00 0.00 1.47
33 34 8.932791 CAACCTAAAACTACGTGAATGACTTAT 58.067 33.333 0.00 0.00 0.00 1.73
34 35 8.143193 TCAACCTAAAACTACGTGAATGACTTA 58.857 33.333 0.00 0.00 0.00 2.24
35 36 6.987992 TCAACCTAAAACTACGTGAATGACTT 59.012 34.615 0.00 0.00 0.00 3.01
36 37 6.423001 GTCAACCTAAAACTACGTGAATGACT 59.577 38.462 0.00 0.00 31.94 3.41
37 38 6.201425 TGTCAACCTAAAACTACGTGAATGAC 59.799 38.462 0.00 0.00 34.44 3.06
38 39 6.282167 TGTCAACCTAAAACTACGTGAATGA 58.718 36.000 0.00 0.00 0.00 2.57
39 40 6.533819 TGTCAACCTAAAACTACGTGAATG 57.466 37.500 0.00 0.00 0.00 2.67
40 41 7.739498 ATTGTCAACCTAAAACTACGTGAAT 57.261 32.000 0.00 0.00 0.00 2.57
41 42 7.556733 AATTGTCAACCTAAAACTACGTGAA 57.443 32.000 0.00 0.00 0.00 3.18
42 43 7.556733 AAATTGTCAACCTAAAACTACGTGA 57.443 32.000 0.00 0.00 0.00 4.35
43 44 9.161684 GTTAAATTGTCAACCTAAAACTACGTG 57.838 33.333 0.00 0.00 0.00 4.49
44 45 9.112725 AGTTAAATTGTCAACCTAAAACTACGT 57.887 29.630 0.00 0.00 0.00 3.57
168 169 9.525826 AGTTCTAGGTCATCAATTTGAGAAATT 57.474 29.630 5.21 0.00 41.57 1.82
170 171 9.436957 GTAGTTCTAGGTCATCAATTTGAGAAA 57.563 33.333 5.21 0.00 0.00 2.52
171 172 7.759886 CGTAGTTCTAGGTCATCAATTTGAGAA 59.240 37.037 5.21 0.00 0.00 2.87
172 173 7.258441 CGTAGTTCTAGGTCATCAATTTGAGA 58.742 38.462 5.21 0.62 0.00 3.27
173 174 6.019479 GCGTAGTTCTAGGTCATCAATTTGAG 60.019 42.308 5.21 0.00 0.00 3.02
174 175 5.810587 GCGTAGTTCTAGGTCATCAATTTGA 59.189 40.000 0.75 0.75 0.00 2.69
175 176 5.276395 CGCGTAGTTCTAGGTCATCAATTTG 60.276 44.000 0.00 0.00 0.00 2.32
176 177 4.804139 CGCGTAGTTCTAGGTCATCAATTT 59.196 41.667 0.00 0.00 0.00 1.82
177 178 4.097437 TCGCGTAGTTCTAGGTCATCAATT 59.903 41.667 5.77 0.00 0.00 2.32
178 179 3.630769 TCGCGTAGTTCTAGGTCATCAAT 59.369 43.478 5.77 0.00 0.00 2.57
179 180 3.011818 TCGCGTAGTTCTAGGTCATCAA 58.988 45.455 5.77 0.00 0.00 2.57
180 181 2.635714 TCGCGTAGTTCTAGGTCATCA 58.364 47.619 5.77 0.00 0.00 3.07
181 182 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
182 183 3.630769 TGATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
183 184 3.011818 TGATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
184 185 3.065095 AGTGATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
185 186 3.015327 AGTGATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
186 187 3.694535 AGTGATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
187 188 7.350467 TGTATAAGTGATTCGCGTAGTTCTAG 58.650 38.462 5.77 0.00 0.00 2.43
188 189 7.250445 TGTATAAGTGATTCGCGTAGTTCTA 57.750 36.000 5.77 0.00 0.00 2.10
189 190 6.127810 TGTATAAGTGATTCGCGTAGTTCT 57.872 37.500 5.77 0.00 0.00 3.01
190 191 6.183359 CGATGTATAAGTGATTCGCGTAGTTC 60.183 42.308 5.77 0.00 0.00 3.01
191 192 5.624081 CGATGTATAAGTGATTCGCGTAGTT 59.376 40.000 5.77 3.55 0.00 2.24
192 193 5.049886 TCGATGTATAAGTGATTCGCGTAGT 60.050 40.000 5.77 0.00 0.00 2.73
193 194 5.379827 TCGATGTATAAGTGATTCGCGTAG 58.620 41.667 5.77 0.00 0.00 3.51
194 195 5.178067 TCTCGATGTATAAGTGATTCGCGTA 59.822 40.000 5.77 0.00 0.00 4.42
195 196 4.024302 TCTCGATGTATAAGTGATTCGCGT 60.024 41.667 5.77 0.00 0.00 6.01
196 197 4.464112 TCTCGATGTATAAGTGATTCGCG 58.536 43.478 0.00 0.00 0.00 5.87
197 198 5.287274 CCATCTCGATGTATAAGTGATTCGC 59.713 44.000 6.20 0.00 37.11 4.70
198 199 6.612306 TCCATCTCGATGTATAAGTGATTCG 58.388 40.000 6.20 0.00 37.11 3.34
199 200 7.032580 CCTCCATCTCGATGTATAAGTGATTC 58.967 42.308 6.20 0.00 37.11 2.52
200 201 6.071108 CCCTCCATCTCGATGTATAAGTGATT 60.071 42.308 6.20 0.00 37.11 2.57
201 202 5.420421 CCCTCCATCTCGATGTATAAGTGAT 59.580 44.000 6.20 0.00 37.11 3.06
202 203 4.767409 CCCTCCATCTCGATGTATAAGTGA 59.233 45.833 6.20 0.00 37.11 3.41
203 204 4.767409 TCCCTCCATCTCGATGTATAAGTG 59.233 45.833 6.20 0.00 37.11 3.16
204 205 4.999310 TCCCTCCATCTCGATGTATAAGT 58.001 43.478 6.20 0.00 37.11 2.24
205 206 5.013547 ACTCCCTCCATCTCGATGTATAAG 58.986 45.833 6.20 0.81 37.11 1.73
206 207 4.999310 ACTCCCTCCATCTCGATGTATAA 58.001 43.478 6.20 0.00 37.11 0.98
207 208 4.659529 ACTCCCTCCATCTCGATGTATA 57.340 45.455 6.20 0.00 37.11 1.47
208 209 3.534357 ACTCCCTCCATCTCGATGTAT 57.466 47.619 6.20 0.00 37.11 2.29
209 210 3.394940 ACTACTCCCTCCATCTCGATGTA 59.605 47.826 6.20 0.00 37.11 2.29
210 211 2.175931 ACTACTCCCTCCATCTCGATGT 59.824 50.000 6.20 0.00 37.11 3.06
211 212 2.870175 ACTACTCCCTCCATCTCGATG 58.130 52.381 0.00 0.00 38.51 3.84
212 213 3.139397 AGAACTACTCCCTCCATCTCGAT 59.861 47.826 0.00 0.00 0.00 3.59
213 214 2.510382 AGAACTACTCCCTCCATCTCGA 59.490 50.000 0.00 0.00 0.00 4.04
214 215 2.938838 AGAACTACTCCCTCCATCTCG 58.061 52.381 0.00 0.00 0.00 4.04
215 216 5.182380 CGAATAGAACTACTCCCTCCATCTC 59.818 48.000 0.00 0.00 0.00 2.75
216 217 5.074115 CGAATAGAACTACTCCCTCCATCT 58.926 45.833 0.00 0.00 0.00 2.90
217 218 5.048573 GTCGAATAGAACTACTCCCTCCATC 60.049 48.000 0.00 0.00 0.00 3.51
218 219 4.828387 GTCGAATAGAACTACTCCCTCCAT 59.172 45.833 0.00 0.00 0.00 3.41
219 220 4.079901 AGTCGAATAGAACTACTCCCTCCA 60.080 45.833 0.00 0.00 0.00 3.86
220 221 4.463070 AGTCGAATAGAACTACTCCCTCC 58.537 47.826 0.00 0.00 0.00 4.30
221 222 5.124645 TGAGTCGAATAGAACTACTCCCTC 58.875 45.833 0.00 0.00 36.56 4.30
222 223 5.113446 TGAGTCGAATAGAACTACTCCCT 57.887 43.478 0.00 0.00 36.56 4.20
223 224 5.125097 TGTTGAGTCGAATAGAACTACTCCC 59.875 44.000 8.25 0.00 36.56 4.30
224 225 6.192234 TGTTGAGTCGAATAGAACTACTCC 57.808 41.667 8.25 0.00 36.56 3.85
225 226 6.197468 GCATGTTGAGTCGAATAGAACTACTC 59.803 42.308 8.25 0.00 37.64 2.59
226 227 6.037098 GCATGTTGAGTCGAATAGAACTACT 58.963 40.000 8.25 0.00 0.00 2.57
227 228 5.805486 TGCATGTTGAGTCGAATAGAACTAC 59.195 40.000 8.25 0.00 0.00 2.73
228 229 5.805486 GTGCATGTTGAGTCGAATAGAACTA 59.195 40.000 8.25 0.00 0.00 2.24
229 230 4.627467 GTGCATGTTGAGTCGAATAGAACT 59.373 41.667 8.25 0.00 0.00 3.01
230 231 4.388773 TGTGCATGTTGAGTCGAATAGAAC 59.611 41.667 0.00 0.00 0.00 3.01
233 234 3.679502 TGTGTGCATGTTGAGTCGAATAG 59.320 43.478 0.00 0.00 0.00 1.73
246 247 2.203466 TGGTGGGGTGTGTGCATG 60.203 61.111 0.00 0.00 0.00 4.06
255 256 0.188342 AGCTTTTGATGTGGTGGGGT 59.812 50.000 0.00 0.00 0.00 4.95
263 264 0.593128 GCGTGGTGAGCTTTTGATGT 59.407 50.000 0.00 0.00 0.00 3.06
271 272 1.446099 CATACGTGCGTGGTGAGCT 60.446 57.895 7.55 0.00 35.28 4.09
282 283 7.692908 ATGAAAAACTTTTCCAACATACGTG 57.307 32.000 11.42 0.00 44.48 4.49
283 284 9.974980 ATAATGAAAAACTTTTCCAACATACGT 57.025 25.926 11.42 0.00 44.48 3.57
349 350 8.888716 ACTAATAACACATGTTTGCATTCGATA 58.111 29.630 1.98 0.00 39.31 2.92
491 2376 0.870307 CAGTATTCCCGAACGGCGAG 60.870 60.000 16.62 4.14 44.57 5.03
492 2377 1.140161 CAGTATTCCCGAACGGCGA 59.860 57.895 16.62 4.25 44.57 5.54
494 2379 0.808847 GACCAGTATTCCCGAACGGC 60.809 60.000 7.80 0.00 0.00 5.68
497 2382 7.172703 CCATATTTAAGACCAGTATTCCCGAAC 59.827 40.741 0.00 0.00 0.00 3.95
498 2383 7.147444 ACCATATTTAAGACCAGTATTCCCGAA 60.147 37.037 0.00 0.00 0.00 4.30
499 2384 6.328148 ACCATATTTAAGACCAGTATTCCCGA 59.672 38.462 0.00 0.00 0.00 5.14
500 2385 6.531021 ACCATATTTAAGACCAGTATTCCCG 58.469 40.000 0.00 0.00 0.00 5.14
501 2386 7.778382 ACAACCATATTTAAGACCAGTATTCCC 59.222 37.037 0.00 0.00 0.00 3.97
502 2387 8.747538 ACAACCATATTTAAGACCAGTATTCC 57.252 34.615 0.00 0.00 0.00 3.01
571 2459 8.140677 TCCGTTCGAAAATACTTGTCTTAAAA 57.859 30.769 0.00 0.00 0.00 1.52
573 2461 6.366877 CCTCCGTTCGAAAATACTTGTCTTAA 59.633 38.462 0.00 0.00 0.00 1.85
575 2463 4.689345 CCTCCGTTCGAAAATACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
576 2464 4.243270 CCTCCGTTCGAAAATACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
585 2473 0.319405 GGACTCCCTCCGTTCGAAAA 59.681 55.000 0.00 0.00 0.00 2.29
588 2476 0.393537 GTAGGACTCCCTCCGTTCGA 60.394 60.000 0.00 0.00 45.10 3.71
589 2477 0.679002 TGTAGGACTCCCTCCGTTCG 60.679 60.000 0.00 0.00 45.10 3.95
590 2478 1.777941 ATGTAGGACTCCCTCCGTTC 58.222 55.000 0.00 0.00 45.10 3.95
599 2487 9.476928 ACCCATGTATAAGTATATGTAGGACTC 57.523 37.037 0.00 0.00 30.05 3.36
602 2490 9.831682 TGAACCCATGTATAAGTATATGTAGGA 57.168 33.333 0.00 0.00 30.05 2.94
626 2514 2.668212 CGAAAAGTGGCGCCCTGA 60.668 61.111 26.77 1.08 0.00 3.86
768 2658 3.703420 ACTACGACTCCGCATATGTTTC 58.297 45.455 4.29 0.00 39.95 2.78
814 2711 1.299541 AGTGTGCGAAAAGGAGTGTG 58.700 50.000 0.00 0.00 0.00 3.82
922 2819 4.944962 TTGTCAAGTGTGAACTGTGAAG 57.055 40.909 0.00 0.00 34.87 3.02
964 2871 4.569761 CTCAGTTAGCAGCTACCGAATA 57.430 45.455 0.00 0.00 0.00 1.75
1232 3215 9.401873 GCACGTATTTAAATTAAGGAAAACTGT 57.598 29.630 5.91 0.00 0.00 3.55
1246 3415 8.664211 TCCATGTATGTATGCACGTATTTAAA 57.336 30.769 0.00 0.00 0.00 1.52
1247 3416 8.840833 ATCCATGTATGTATGCACGTATTTAA 57.159 30.769 0.00 0.00 0.00 1.52
1248 3417 7.274686 CGATCCATGTATGTATGCACGTATTTA 59.725 37.037 0.00 0.00 0.00 1.40
1249 3418 6.090763 CGATCCATGTATGTATGCACGTATTT 59.909 38.462 0.00 0.00 0.00 1.40
1251 3420 5.102313 CGATCCATGTATGTATGCACGTAT 58.898 41.667 0.00 0.00 0.00 3.06
1278 3458 2.289195 ACCACAATTTTCATGCAGCAGG 60.289 45.455 0.00 0.00 0.00 4.85
1279 3459 3.034721 ACCACAATTTTCATGCAGCAG 57.965 42.857 0.00 0.00 0.00 4.24
1317 3518 1.175654 CTGCATGCACATGTACCCAA 58.824 50.000 18.46 0.00 40.80 4.12
1318 3519 0.038021 ACTGCATGCACATGTACCCA 59.962 50.000 18.46 0.00 40.80 4.51
1319 3520 0.452987 CACTGCATGCACATGTACCC 59.547 55.000 18.46 0.00 40.80 3.69
1325 3526 3.671008 AATTGAACACTGCATGCACAT 57.329 38.095 18.46 4.89 0.00 3.21
1363 3564 4.164087 TGACACGGCCACCACGTT 62.164 61.111 2.24 0.00 43.58 3.99
1426 3627 4.324991 GTCGGCCCCGGACTTGTT 62.325 66.667 0.73 0.00 40.25 2.83
1624 3825 9.971922 GGTACAGTACACCTTTACGATAATAAT 57.028 33.333 12.89 0.00 32.98 1.28
1625 3826 9.189156 AGGTACAGTACACCTTTACGATAATAA 57.811 33.333 12.89 0.00 44.18 1.40
1626 3827 8.623903 CAGGTACAGTACACCTTTACGATAATA 58.376 37.037 12.89 0.00 44.18 0.98
1627 3828 7.123247 ACAGGTACAGTACACCTTTACGATAAT 59.877 37.037 12.89 0.00 44.18 1.28
1628 3829 6.434028 ACAGGTACAGTACACCTTTACGATAA 59.566 38.462 12.89 0.00 44.18 1.75
1629 3830 5.945784 ACAGGTACAGTACACCTTTACGATA 59.054 40.000 12.89 0.00 44.18 2.92
1630 3831 4.768968 ACAGGTACAGTACACCTTTACGAT 59.231 41.667 12.89 0.00 44.18 3.73
1631 3832 4.144297 ACAGGTACAGTACACCTTTACGA 58.856 43.478 12.89 0.00 44.18 3.43
1632 3833 4.510038 ACAGGTACAGTACACCTTTACG 57.490 45.455 12.89 0.00 44.18 3.18
1654 3855 9.601217 GTGACATAGTAGTGGAAATAAATCAGT 57.399 33.333 0.00 0.00 0.00 3.41
1656 3857 8.255206 ACGTGACATAGTAGTGGAAATAAATCA 58.745 33.333 0.00 0.00 0.00 2.57
1657 3858 8.644318 ACGTGACATAGTAGTGGAAATAAATC 57.356 34.615 0.00 0.00 0.00 2.17
1665 3898 6.567132 CGCATATAACGTGACATAGTAGTGGA 60.567 42.308 0.00 0.00 0.00 4.02
1677 3932 7.140048 TCATTACACATACGCATATAACGTGA 58.860 34.615 12.85 0.00 44.79 4.35
1680 3935 9.805966 AAAATCATTACACATACGCATATAACG 57.194 29.630 0.00 0.00 0.00 3.18
1689 3944 7.891782 ACGAGTACAAAATCATTACACATACG 58.108 34.615 0.00 0.00 0.00 3.06
1738 3995 5.142265 CAGATCAAAATGATAATCGGCACG 58.858 41.667 0.00 0.00 46.38 5.34
1751 4008 3.119245 GCTGTGTGATGGCAGATCAAAAT 60.119 43.478 0.00 0.00 34.87 1.82
1798 5451 3.673338 GGAAAAACATTTTGCTCCGCTAC 59.327 43.478 0.57 0.00 0.00 3.58
1801 5454 2.478831 TGGAAAAACATTTTGCTCCGC 58.521 42.857 8.24 0.00 32.33 5.54
1803 5456 4.260743 GCACTTGGAAAAACATTTTGCTCC 60.261 41.667 8.24 4.25 31.00 4.70
1817 5470 4.142730 GCATTGTTGTTTTTGCACTTGGAA 60.143 37.500 0.00 0.00 35.22 3.53
1826 5479 5.976586 ACGATTCATGCATTGTTGTTTTTG 58.023 33.333 0.00 0.00 0.00 2.44
1835 5488 3.440228 TGCATTGACGATTCATGCATTG 58.560 40.909 0.00 0.00 39.38 2.82
1836 5489 3.379057 TCTGCATTGACGATTCATGCATT 59.621 39.130 13.78 0.00 41.40 3.56
1837 5490 2.946990 TCTGCATTGACGATTCATGCAT 59.053 40.909 13.78 0.00 41.40 3.96
1885 5597 5.121768 ACTGCGAGTGATGTTGGTTTTATAC 59.878 40.000 0.00 0.00 0.00 1.47
1920 5632 3.545078 GCTCTTGCGCTTTTGTGATATTG 59.455 43.478 9.73 0.00 0.00 1.90
1988 5702 5.784177 TGTCTTCTGAATCTGGAACTACAC 58.216 41.667 0.00 0.00 0.00 2.90
2423 6141 5.059161 GCATTTGCATACCTCTGATCTACA 58.941 41.667 0.00 0.00 41.59 2.74
2424 6226 5.604010 GCATTTGCATACCTCTGATCTAC 57.396 43.478 0.00 0.00 41.59 2.59
2454 6256 0.178873 ACAGGGGTGGACTGGTATGT 60.179 55.000 0.00 0.00 40.23 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.