Multiple sequence alignment - TraesCS2A01G146100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G146100 chr2A 100.000 5901 0 0 1 5901 90741749 90747649 0.000000e+00 10898.0
1 TraesCS2A01G146100 chr2D 92.785 3770 184 37 2188 5901 93054862 93058599 0.000000e+00 5374.0
2 TraesCS2A01G146100 chr2D 87.522 1130 75 29 1 1102 93052796 93053887 0.000000e+00 1245.0
3 TraesCS2A01G146100 chr2D 89.674 368 27 9 1139 1502 93053983 93054343 5.390000e-125 459.0
4 TraesCS2A01G146100 chr2D 88.728 346 32 3 1808 2153 93054539 93054877 3.290000e-112 416.0
5 TraesCS2A01G146100 chr2D 90.503 179 12 2 1590 1765 93054350 93054526 1.280000e-56 231.0
6 TraesCS2A01G146100 chr2D 76.716 335 39 20 9 335 390318495 390318192 3.680000e-32 150.0
7 TraesCS2A01G146100 chr2D 100.000 37 0 0 1772 1808 17963557 17963521 1.060000e-07 69.4
8 TraesCS2A01G146100 chr2D 100.000 37 0 0 1772 1808 39610906 39610942 1.060000e-07 69.4
9 TraesCS2A01G146100 chr2D 100.000 37 0 0 1772 1808 635040919 635040955 1.060000e-07 69.4
10 TraesCS2A01G146100 chr2B 89.610 3513 258 60 2203 5652 144606549 144610017 0.000000e+00 4366.0
11 TraesCS2A01G146100 chr2B 84.955 1542 124 56 1 1501 144604548 144606022 0.000000e+00 1463.0
12 TraesCS2A01G146100 chr2B 86.103 331 38 3 1808 2131 144606218 144606547 3.380000e-92 350.0
13 TraesCS2A01G146100 chr2B 88.235 255 18 6 5659 5901 144610145 144610399 1.610000e-75 294.0
14 TraesCS2A01G146100 chr2B 84.536 194 24 5 1580 1770 144606020 144606210 2.810000e-43 187.0
15 TraesCS2A01G146100 chr6D 75.953 341 41 21 3 335 173958347 173958654 2.870000e-28 137.0
16 TraesCS2A01G146100 chrUn 100.000 37 0 0 1772 1808 354406488 354406452 1.060000e-07 69.4
17 TraesCS2A01G146100 chrUn 100.000 37 0 0 1772 1808 440314929 440314965 1.060000e-07 69.4
18 TraesCS2A01G146100 chr7D 100.000 37 0 0 1772 1808 382010504 382010468 1.060000e-07 69.4
19 TraesCS2A01G146100 chr7D 100.000 37 0 0 1772 1808 601302846 601302810 1.060000e-07 69.4
20 TraesCS2A01G146100 chr5B 100.000 37 0 0 1772 1808 713042552 713042516 1.060000e-07 69.4
21 TraesCS2A01G146100 chr4D 100.000 37 0 0 1772 1808 123582241 123582277 1.060000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G146100 chr2A 90741749 90747649 5900 False 10898 10898 100.0000 1 5901 1 chr2A.!!$F1 5900
1 TraesCS2A01G146100 chr2D 93052796 93058599 5803 False 1545 5374 89.8424 1 5901 5 chr2D.!!$F3 5900
2 TraesCS2A01G146100 chr2B 144604548 144610399 5851 False 1332 4366 86.6878 1 5901 5 chr2B.!!$F1 5900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 373 0.107831 TCTGAACCCCCAACTGAACG 59.892 55.000 0.0 0.0 0.0 3.95 F
1463 1570 0.409484 AGGGGATGGTTGGTTCTTGG 59.591 55.000 0.0 0.0 0.0 3.61 F
2153 2273 0.035458 CCCTTGCTTCGTTCTGTCCT 59.965 55.000 0.0 0.0 0.0 3.85 F
2299 2419 1.339055 TGCTATCCAGTGTCCAACAGC 60.339 52.381 0.0 0.0 0.0 4.40 F
3055 3212 2.236146 AGTCTGTCCGGCAACAATCATA 59.764 45.455 0.0 0.0 0.0 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1666 0.172803 CTCGACGGTCAAGGTTAGGG 59.827 60.000 9.10 0.0 0.00 3.53 R
2530 2666 0.322816 CAGCACCTGGCCACACTAAT 60.323 55.000 0.00 0.0 46.50 1.73 R
3124 3282 1.270412 CCAAGTGTGGCATGTGCAAAT 60.270 47.619 7.36 0.0 44.36 2.32 R
4273 4459 1.269958 AGCAGGTGCAGTGTATCTCA 58.730 50.000 4.48 0.0 45.16 3.27 R
4991 5177 0.179054 GCCAGCTCAGCAGATCATGA 60.179 55.000 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.348179 CGACATCAGAATCATAGGCAATCTC 59.652 44.000 0.00 0.00 0.00 2.75
45 46 3.332919 CAATCTCCACAGGAACAGACAG 58.667 50.000 0.00 0.00 0.00 3.51
49 50 1.451504 CACAGGAACAGACAGCCCA 59.548 57.895 0.00 0.00 0.00 5.36
51 52 1.344953 ACAGGAACAGACAGCCCACA 61.345 55.000 0.00 0.00 0.00 4.17
58 59 0.877071 CAGACAGCCCACATGTTCAC 59.123 55.000 0.00 0.00 0.00 3.18
65 66 1.539827 GCCCACATGTTCACAACTACC 59.460 52.381 0.00 0.00 0.00 3.18
87 88 4.755123 CCCCGTATGAACTATTGATGAACC 59.245 45.833 0.00 0.00 0.00 3.62
88 89 4.755123 CCCGTATGAACTATTGATGAACCC 59.245 45.833 0.00 0.00 0.00 4.11
89 90 5.454755 CCCGTATGAACTATTGATGAACCCT 60.455 44.000 0.00 0.00 0.00 4.34
90 91 5.466728 CCGTATGAACTATTGATGAACCCTG 59.533 44.000 0.00 0.00 0.00 4.45
91 92 6.049149 CGTATGAACTATTGATGAACCCTGT 58.951 40.000 0.00 0.00 0.00 4.00
93 94 7.254455 CGTATGAACTATTGATGAACCCTGTTC 60.254 40.741 0.07 0.07 34.82 3.18
94 95 6.126863 TGAACTATTGATGAACCCTGTTCT 57.873 37.500 8.30 0.00 35.16 3.01
95 96 6.173339 TGAACTATTGATGAACCCTGTTCTC 58.827 40.000 8.30 4.63 35.16 2.87
96 97 5.762179 ACTATTGATGAACCCTGTTCTCA 57.238 39.130 8.30 6.73 0.00 3.27
99 100 5.972107 ATTGATGAACCCTGTTCTCAAAG 57.028 39.130 17.44 0.00 0.00 2.77
100 101 3.149196 TGATGAACCCTGTTCTCAAAGC 58.851 45.455 8.30 0.00 0.00 3.51
101 102 3.181440 TGATGAACCCTGTTCTCAAAGCT 60.181 43.478 8.30 0.00 0.00 3.74
103 104 4.431416 TGAACCCTGTTCTCAAAGCTAA 57.569 40.909 8.30 0.00 0.00 3.09
104 105 4.985538 TGAACCCTGTTCTCAAAGCTAAT 58.014 39.130 8.30 0.00 0.00 1.73
105 106 4.761739 TGAACCCTGTTCTCAAAGCTAATG 59.238 41.667 8.30 0.00 0.00 1.90
106 107 4.640771 ACCCTGTTCTCAAAGCTAATGA 57.359 40.909 2.50 2.50 0.00 2.57
107 108 4.327680 ACCCTGTTCTCAAAGCTAATGAC 58.672 43.478 0.00 0.00 0.00 3.06
114 115 8.565896 TGTTCTCAAAGCTAATGACATAATGT 57.434 30.769 0.00 0.00 0.00 2.71
116 117 8.668353 GTTCTCAAAGCTAATGACATAATGTGA 58.332 33.333 0.00 0.00 0.00 3.58
117 118 8.201554 TCTCAAAGCTAATGACATAATGTGAC 57.798 34.615 0.00 0.00 0.00 3.67
124 125 9.783081 AGCTAATGACATAATGTGACATCATTA 57.217 29.630 14.35 14.35 41.30 1.90
133 134 2.482336 TGTGACATCATTAACGTGCACC 59.518 45.455 12.15 0.00 0.00 5.01
134 135 2.742053 GTGACATCATTAACGTGCACCT 59.258 45.455 12.15 0.73 0.00 4.00
135 136 2.741517 TGACATCATTAACGTGCACCTG 59.258 45.455 12.15 0.00 0.00 4.00
195 199 0.950555 CAGTCTAGCAGCACGCCAAA 60.951 55.000 0.00 0.00 44.04 3.28
197 201 0.804989 GTCTAGCAGCACGCCAAATT 59.195 50.000 0.00 0.00 44.04 1.82
199 203 0.247814 CTAGCAGCACGCCAAATTCG 60.248 55.000 0.00 0.00 44.04 3.34
206 210 1.451651 GCACGCCAAATTCGAAAAGTG 59.548 47.619 0.00 7.66 0.00 3.16
207 211 2.050691 CACGCCAAATTCGAAAAGTGG 58.949 47.619 16.71 16.71 0.00 4.00
231 236 6.926826 GGAACATTGGTAAAAACCGATTCTTT 59.073 34.615 0.00 0.00 31.64 2.52
235 240 4.612943 TGGTAAAAACCGATTCTTTGTGC 58.387 39.130 0.00 0.00 0.00 4.57
238 243 5.694458 GGTAAAAACCGATTCTTTGTGCAAT 59.306 36.000 0.00 0.00 0.00 3.56
263 269 2.421424 GCAGATGGATGTCAACTTGACC 59.579 50.000 17.51 4.96 46.40 4.02
279 285 4.772100 ACTTGACCAATCGAATCCCAATTT 59.228 37.500 0.00 0.00 0.00 1.82
297 303 9.768215 TCCCAATTTCTTAAATTAGACCATTCT 57.232 29.630 0.00 0.00 38.97 2.40
316 322 8.005388 ACCATTCTACTAGCTTAGAATCTACCA 58.995 37.037 14.99 0.00 43.87 3.25
320 326 8.818622 TCTACTAGCTTAGAATCTACCAACAA 57.181 34.615 0.00 0.00 0.00 2.83
321 327 8.904834 TCTACTAGCTTAGAATCTACCAACAAG 58.095 37.037 0.00 0.00 0.00 3.16
334 340 6.061441 TCTACCAACAAGAAGCAAATCTGAA 58.939 36.000 0.00 0.00 0.00 3.02
348 373 0.107831 TCTGAACCCCCAACTGAACG 59.892 55.000 0.00 0.00 0.00 3.95
368 396 8.996988 TGAACGAATAACACAATAAGAACAAC 57.003 30.769 0.00 0.00 0.00 3.32
387 415 1.944709 ACTTGCAACCTAAACGACCAC 59.055 47.619 0.00 0.00 0.00 4.16
458 488 3.076621 CAAGAAGCAACATCTACCAGCA 58.923 45.455 0.00 0.00 0.00 4.41
459 489 2.983229 AGAAGCAACATCTACCAGCAG 58.017 47.619 0.00 0.00 0.00 4.24
460 490 1.399791 GAAGCAACATCTACCAGCAGC 59.600 52.381 0.00 0.00 0.00 5.25
490 523 1.377333 CAAAGGGGGAGGCGAGAAC 60.377 63.158 0.00 0.00 0.00 3.01
636 669 2.024871 CCGCCGACGAGATCAGAC 59.975 66.667 0.00 0.00 43.93 3.51
637 670 2.351322 CGCCGACGAGATCAGACG 60.351 66.667 0.00 0.74 43.93 4.18
638 671 2.652496 GCCGACGAGATCAGACGC 60.652 66.667 0.00 0.00 0.00 5.19
689 722 5.448632 GGAAACAAGCAAGAAAAGAGAACGA 60.449 40.000 0.00 0.00 0.00 3.85
845 878 4.982701 ACCCAGCTGCTTGGTGCC 62.983 66.667 23.14 0.00 42.38 5.01
850 883 1.023513 CAGCTGCTTGGTGCCTACTC 61.024 60.000 0.00 0.00 42.00 2.59
872 905 1.028330 GCCCAGTTAAGGCCCGTTAC 61.028 60.000 0.00 0.00 45.16 2.50
944 986 2.814336 GCGAACTCCACTTCCAATTTCT 59.186 45.455 0.00 0.00 0.00 2.52
945 987 3.365364 GCGAACTCCACTTCCAATTTCTG 60.365 47.826 0.00 0.00 0.00 3.02
946 988 3.365364 CGAACTCCACTTCCAATTTCTGC 60.365 47.826 0.00 0.00 0.00 4.26
947 989 3.515602 ACTCCACTTCCAATTTCTGCT 57.484 42.857 0.00 0.00 0.00 4.24
991 1033 1.456705 CGAGGAGGAGGAGGAAGGG 60.457 68.421 0.00 0.00 0.00 3.95
1044 1086 2.131067 GCGGGAGGAGGAAGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
1068 1110 1.144936 CTTCGTCTGCCTGGATCCC 59.855 63.158 9.90 0.00 0.00 3.85
1106 1148 2.704572 CAAGTAGGGGTTTGCTCTCTG 58.295 52.381 0.00 0.00 0.00 3.35
1109 1151 1.066071 GTAGGGGTTTGCTCTCTGTCC 60.066 57.143 0.00 0.00 0.00 4.02
1110 1152 0.768221 AGGGGTTTGCTCTCTGTCCA 60.768 55.000 0.00 0.00 0.00 4.02
1112 1154 1.680249 GGGGTTTGCTCTCTGTCCATC 60.680 57.143 0.00 0.00 0.00 3.51
1116 1158 2.235898 GTTTGCTCTCTGTCCATCCTCT 59.764 50.000 0.00 0.00 0.00 3.69
1118 1160 0.667993 GCTCTCTGTCCATCCTCTCG 59.332 60.000 0.00 0.00 0.00 4.04
1119 1161 1.317613 CTCTCTGTCCATCCTCTCGG 58.682 60.000 0.00 0.00 0.00 4.63
1120 1162 0.626382 TCTCTGTCCATCCTCTCGGT 59.374 55.000 0.00 0.00 0.00 4.69
1121 1163 1.006043 TCTCTGTCCATCCTCTCGGTT 59.994 52.381 0.00 0.00 0.00 4.44
1123 1165 0.460987 CTGTCCATCCTCTCGGTTGC 60.461 60.000 0.00 0.00 0.00 4.17
1124 1166 1.191489 TGTCCATCCTCTCGGTTGCA 61.191 55.000 0.00 0.00 0.00 4.08
1125 1167 0.460987 GTCCATCCTCTCGGTTGCAG 60.461 60.000 0.00 0.00 0.00 4.41
1127 1169 1.817099 CATCCTCTCGGTTGCAGCC 60.817 63.158 10.00 10.00 0.00 4.85
1128 1170 1.992277 ATCCTCTCGGTTGCAGCCT 60.992 57.895 18.19 0.00 0.00 4.58
1131 1173 1.301677 CCTCTCGGTTGCAGCCTTTC 61.302 60.000 18.19 0.00 0.00 2.62
1132 1174 1.301677 CTCTCGGTTGCAGCCTTTCC 61.302 60.000 18.19 0.00 0.00 3.13
1134 1176 3.737172 CGGTTGCAGCCTTTCCCG 61.737 66.667 18.19 0.00 0.00 5.14
1135 1177 3.373565 GGTTGCAGCCTTTCCCGG 61.374 66.667 13.08 0.00 0.00 5.73
1136 1178 2.597510 GTTGCAGCCTTTCCCGGT 60.598 61.111 0.00 0.00 0.00 5.28
1137 1179 2.597217 TTGCAGCCTTTCCCGGTG 60.597 61.111 0.00 0.00 0.00 4.94
1138 1180 3.126703 TTGCAGCCTTTCCCGGTGA 62.127 57.895 0.00 0.00 0.00 4.02
1140 1182 2.747855 CAGCCTTTCCCGGTGAGC 60.748 66.667 0.00 0.00 0.00 4.26
1141 1183 2.930562 AGCCTTTCCCGGTGAGCT 60.931 61.111 0.00 0.00 0.00 4.09
1143 1185 2.045926 CCTTTCCCGGTGAGCTGG 60.046 66.667 0.00 0.00 40.89 4.85
1157 1258 3.479255 GCTGGGTCGAAAGCTTTTG 57.521 52.632 18.91 18.91 36.47 2.44
1162 1263 1.877443 GGGTCGAAAGCTTTTGTGCTA 59.123 47.619 22.94 4.12 43.24 3.49
1360 1462 0.887933 GGATGGTGAATTGGCAACGT 59.112 50.000 0.00 0.00 42.51 3.99
1362 1464 1.269448 GATGGTGAATTGGCAACGTGT 59.731 47.619 0.00 0.00 42.51 4.49
1372 1474 2.186826 GCAACGTGTGGGTCTTGCT 61.187 57.895 0.00 0.00 36.81 3.91
1425 1532 1.228154 GGGACAAGCGTGGAGGTTT 60.228 57.895 4.26 0.00 38.72 3.27
1433 1540 3.041508 AGCGTGGAGGTTTCTTAGTTC 57.958 47.619 0.00 0.00 0.00 3.01
1459 1566 1.636003 AGAAGAGGGGATGGTTGGTTC 59.364 52.381 0.00 0.00 0.00 3.62
1460 1567 1.636003 GAAGAGGGGATGGTTGGTTCT 59.364 52.381 0.00 0.00 0.00 3.01
1461 1568 1.760405 AGAGGGGATGGTTGGTTCTT 58.240 50.000 0.00 0.00 0.00 2.52
1462 1569 1.355720 AGAGGGGATGGTTGGTTCTTG 59.644 52.381 0.00 0.00 0.00 3.02
1463 1570 0.409484 AGGGGATGGTTGGTTCTTGG 59.591 55.000 0.00 0.00 0.00 3.61
1465 1572 1.482365 GGGGATGGTTGGTTCTTGGTT 60.482 52.381 0.00 0.00 0.00 3.67
1466 1573 1.618343 GGGATGGTTGGTTCTTGGTTG 59.382 52.381 0.00 0.00 0.00 3.77
1467 1574 2.593026 GGATGGTTGGTTCTTGGTTGA 58.407 47.619 0.00 0.00 0.00 3.18
1468 1575 2.962421 GGATGGTTGGTTCTTGGTTGAA 59.038 45.455 0.00 0.00 0.00 2.69
1469 1576 3.243737 GGATGGTTGGTTCTTGGTTGAAC 60.244 47.826 0.00 0.00 43.88 3.18
1470 1577 3.094484 TGGTTGGTTCTTGGTTGAACT 57.906 42.857 7.22 0.00 44.02 3.01
1471 1578 3.436243 TGGTTGGTTCTTGGTTGAACTT 58.564 40.909 7.22 0.00 44.02 2.66
1472 1579 3.194542 TGGTTGGTTCTTGGTTGAACTTG 59.805 43.478 7.22 0.00 44.02 3.16
1473 1580 3.445805 GGTTGGTTCTTGGTTGAACTTGA 59.554 43.478 7.22 0.00 44.02 3.02
1475 1582 4.712122 TGGTTCTTGGTTGAACTTGAAC 57.288 40.909 14.83 14.83 44.02 3.18
1476 1583 4.082845 TGGTTCTTGGTTGAACTTGAACA 58.917 39.130 20.30 10.64 44.02 3.18
1477 1584 4.709397 TGGTTCTTGGTTGAACTTGAACAT 59.291 37.500 20.30 0.00 44.02 2.71
1486 1593 6.039616 GGTTGAACTTGAACATTTTGTGCTA 58.960 36.000 0.00 0.00 0.00 3.49
1502 1609 8.671384 TTTTGTGCTACTCAAGTTAGTTACAT 57.329 30.769 0.00 0.00 0.00 2.29
1503 1610 7.652300 TTGTGCTACTCAAGTTAGTTACATG 57.348 36.000 0.00 0.00 0.00 3.21
1505 1612 7.888424 TGTGCTACTCAAGTTAGTTACATGTA 58.112 34.615 0.08 0.08 0.00 2.29
1506 1613 8.027189 TGTGCTACTCAAGTTAGTTACATGTAG 58.973 37.037 5.56 0.00 0.00 2.74
1507 1614 8.027771 GTGCTACTCAAGTTAGTTACATGTAGT 58.972 37.037 5.56 0.91 0.00 2.73
1508 1615 9.234827 TGCTACTCAAGTTAGTTACATGTAGTA 57.765 33.333 5.56 2.07 0.00 1.82
1509 1616 9.719279 GCTACTCAAGTTAGTTACATGTAGTAG 57.281 37.037 15.83 15.83 38.10 2.57
1510 1617 9.719279 CTACTCAAGTTAGTTACATGTAGTAGC 57.281 37.037 5.56 4.67 34.06 3.58
1511 1618 7.545489 ACTCAAGTTAGTTACATGTAGTAGCC 58.455 38.462 5.56 0.00 34.77 3.93
1512 1619 6.870769 TCAAGTTAGTTACATGTAGTAGCCC 58.129 40.000 5.56 0.00 34.77 5.19
1513 1620 6.666546 TCAAGTTAGTTACATGTAGTAGCCCT 59.333 38.462 5.56 0.00 34.77 5.19
1514 1621 7.835682 TCAAGTTAGTTACATGTAGTAGCCCTA 59.164 37.037 5.56 0.00 34.77 3.53
1515 1622 8.472413 CAAGTTAGTTACATGTAGTAGCCCTAA 58.528 37.037 5.56 4.87 34.77 2.69
1516 1623 8.599624 AGTTAGTTACATGTAGTAGCCCTAAA 57.400 34.615 5.56 0.00 34.77 1.85
1517 1624 9.210228 AGTTAGTTACATGTAGTAGCCCTAAAT 57.790 33.333 5.56 4.34 34.77 1.40
1521 1628 9.998106 AGTTACATGTAGTAGCCCTAAATAATG 57.002 33.333 5.56 0.00 34.77 1.90
1522 1629 8.718734 GTTACATGTAGTAGCCCTAAATAATGC 58.281 37.037 5.56 0.00 33.43 3.56
1523 1630 7.079451 ACATGTAGTAGCCCTAAATAATGCT 57.921 36.000 0.00 0.00 37.84 3.79
1524 1631 8.202461 ACATGTAGTAGCCCTAAATAATGCTA 57.798 34.615 0.00 0.00 35.34 3.49
1528 1635 5.840940 GTAGCCCTAAATAATGCTACGTG 57.159 43.478 0.00 0.00 44.50 4.49
1529 1636 4.417426 AGCCCTAAATAATGCTACGTGT 57.583 40.909 0.00 0.00 30.97 4.49
1530 1637 4.777463 AGCCCTAAATAATGCTACGTGTT 58.223 39.130 0.00 0.00 30.97 3.32
1531 1638 5.920903 AGCCCTAAATAATGCTACGTGTTA 58.079 37.500 0.00 0.00 30.97 2.41
1532 1639 6.531021 AGCCCTAAATAATGCTACGTGTTAT 58.469 36.000 0.00 0.00 30.97 1.89
1533 1640 6.426937 AGCCCTAAATAATGCTACGTGTTATG 59.573 38.462 0.00 0.00 30.97 1.90
1534 1641 6.204108 GCCCTAAATAATGCTACGTGTTATGT 59.796 38.462 0.00 0.00 0.00 2.29
1535 1642 7.255001 GCCCTAAATAATGCTACGTGTTATGTT 60.255 37.037 0.00 0.00 0.00 2.71
1536 1643 8.280497 CCCTAAATAATGCTACGTGTTATGTTC 58.720 37.037 0.00 0.00 0.00 3.18
1537 1644 8.822855 CCTAAATAATGCTACGTGTTATGTTCA 58.177 33.333 0.00 0.00 0.00 3.18
1540 1647 7.843490 ATAATGCTACGTGTTATGTTCAAGT 57.157 32.000 0.00 0.00 0.00 3.16
1541 1648 6.554334 AATGCTACGTGTTATGTTCAAGTT 57.446 33.333 0.00 0.00 0.00 2.66
1542 1649 5.585500 TGCTACGTGTTATGTTCAAGTTC 57.415 39.130 0.00 0.00 0.00 3.01
1543 1650 5.051153 TGCTACGTGTTATGTTCAAGTTCA 58.949 37.500 0.00 0.00 0.00 3.18
1544 1651 5.524281 TGCTACGTGTTATGTTCAAGTTCAA 59.476 36.000 0.00 0.00 0.00 2.69
1545 1652 5.844396 GCTACGTGTTATGTTCAAGTTCAAC 59.156 40.000 0.00 0.00 0.00 3.18
1546 1653 5.164606 ACGTGTTATGTTCAAGTTCAACC 57.835 39.130 0.00 0.00 0.00 3.77
1547 1654 4.035909 ACGTGTTATGTTCAAGTTCAACCC 59.964 41.667 0.00 0.00 0.00 4.11
1548 1655 4.035792 CGTGTTATGTTCAAGTTCAACCCA 59.964 41.667 0.00 0.00 0.00 4.51
1549 1656 5.449314 CGTGTTATGTTCAAGTTCAACCCAA 60.449 40.000 0.00 0.00 0.00 4.12
1550 1657 5.746721 GTGTTATGTTCAAGTTCAACCCAAC 59.253 40.000 0.00 0.00 0.00 3.77
1551 1658 5.654650 TGTTATGTTCAAGTTCAACCCAACT 59.345 36.000 5.48 0.00 38.30 3.16
1552 1659 6.153680 TGTTATGTTCAAGTTCAACCCAACTT 59.846 34.615 5.48 0.00 45.66 2.66
1559 1666 3.477530 AGTTCAACCCAACTTGAGTAGC 58.522 45.455 0.00 0.00 32.34 3.58
1560 1667 2.552743 GTTCAACCCAACTTGAGTAGCC 59.447 50.000 0.00 0.00 31.76 3.93
1561 1668 1.073284 TCAACCCAACTTGAGTAGCCC 59.927 52.381 0.00 0.00 0.00 5.19
1562 1669 1.073923 CAACCCAACTTGAGTAGCCCT 59.926 52.381 0.00 0.00 0.00 5.19
1563 1670 2.304761 CAACCCAACTTGAGTAGCCCTA 59.695 50.000 0.00 0.00 0.00 3.53
1564 1671 2.627933 ACCCAACTTGAGTAGCCCTAA 58.372 47.619 0.00 0.00 0.00 2.69
1565 1672 2.305052 ACCCAACTTGAGTAGCCCTAAC 59.695 50.000 0.00 0.00 0.00 2.34
1566 1673 2.355818 CCCAACTTGAGTAGCCCTAACC 60.356 54.545 0.00 0.00 0.00 2.85
1567 1674 2.572104 CCAACTTGAGTAGCCCTAACCT 59.428 50.000 0.00 0.00 0.00 3.50
1568 1675 3.009143 CCAACTTGAGTAGCCCTAACCTT 59.991 47.826 0.00 0.00 0.00 3.50
1569 1676 3.983044 ACTTGAGTAGCCCTAACCTTG 57.017 47.619 0.00 0.00 0.00 3.61
1570 1677 3.517612 ACTTGAGTAGCCCTAACCTTGA 58.482 45.455 0.00 0.00 0.00 3.02
1571 1678 3.261137 ACTTGAGTAGCCCTAACCTTGAC 59.739 47.826 0.00 0.00 0.00 3.18
1572 1679 2.185387 TGAGTAGCCCTAACCTTGACC 58.815 52.381 0.00 0.00 0.00 4.02
1573 1680 1.136500 GAGTAGCCCTAACCTTGACCG 59.864 57.143 0.00 0.00 0.00 4.79
1574 1681 0.900421 GTAGCCCTAACCTTGACCGT 59.100 55.000 0.00 0.00 0.00 4.83
1575 1682 1.134877 GTAGCCCTAACCTTGACCGTC 60.135 57.143 0.00 0.00 0.00 4.79
1576 1683 1.447314 GCCCTAACCTTGACCGTCG 60.447 63.158 0.00 0.00 0.00 5.12
1577 1684 1.880819 GCCCTAACCTTGACCGTCGA 61.881 60.000 0.00 0.00 0.00 4.20
1578 1685 0.172803 CCCTAACCTTGACCGTCGAG 59.827 60.000 8.66 8.66 0.00 4.04
1579 1686 0.886563 CCTAACCTTGACCGTCGAGT 59.113 55.000 13.74 0.45 0.00 4.18
1580 1687 2.086869 CCTAACCTTGACCGTCGAGTA 58.913 52.381 13.74 1.53 0.00 2.59
1581 1688 2.159462 CCTAACCTTGACCGTCGAGTAC 60.159 54.545 13.74 0.00 0.00 2.73
1582 1689 0.600057 AACCTTGACCGTCGAGTACC 59.400 55.000 13.74 0.00 0.00 3.34
1583 1690 0.538057 ACCTTGACCGTCGAGTACCA 60.538 55.000 13.74 0.00 0.00 3.25
1584 1691 0.599558 CCTTGACCGTCGAGTACCAA 59.400 55.000 13.74 0.00 0.00 3.67
1585 1692 1.203994 CCTTGACCGTCGAGTACCAAT 59.796 52.381 13.74 0.00 0.00 3.16
1586 1693 2.424601 CCTTGACCGTCGAGTACCAATA 59.575 50.000 13.74 0.00 0.00 1.90
1603 1710 9.221933 AGTACCAATATTTTTGTGTCGACAATA 57.778 29.630 21.95 14.23 41.77 1.90
1609 1716 9.730420 AATATTTTTGTGTCGACAATAATAGGC 57.270 29.630 21.95 5.66 43.35 3.93
1689 1802 8.592105 ATTACATGTTGTTTCATTTTGGTCAG 57.408 30.769 2.30 0.00 0.00 3.51
1731 1844 1.072159 GGCACTGGCAGTCTGTTCT 59.928 57.895 19.13 0.00 43.71 3.01
1732 1845 0.321671 GGCACTGGCAGTCTGTTCTA 59.678 55.000 19.13 0.00 43.71 2.10
1775 1888 6.918043 GTGCTGATCACAATTTTAGTGTTC 57.082 37.500 0.00 0.00 44.98 3.18
1776 1889 5.565259 GTGCTGATCACAATTTTAGTGTTCG 59.435 40.000 0.00 0.00 44.98 3.95
1777 1890 4.554973 GCTGATCACAATTTTAGTGTTCGC 59.445 41.667 0.00 0.00 38.12 4.70
1778 1891 5.041951 TGATCACAATTTTAGTGTTCGCC 57.958 39.130 0.00 0.00 38.12 5.54
1779 1892 3.529634 TCACAATTTTAGTGTTCGCCG 57.470 42.857 0.00 0.00 38.16 6.46
1780 1893 1.976045 CACAATTTTAGTGTTCGCCGC 59.024 47.619 0.00 0.00 32.44 6.53
1781 1894 1.068816 ACAATTTTAGTGTTCGCCGCC 60.069 47.619 0.00 0.00 0.00 6.13
1782 1895 1.199097 CAATTTTAGTGTTCGCCGCCT 59.801 47.619 0.00 0.00 0.00 5.52
1783 1896 1.084289 ATTTTAGTGTTCGCCGCCTC 58.916 50.000 0.00 0.00 0.00 4.70
1784 1897 1.286354 TTTTAGTGTTCGCCGCCTCG 61.286 55.000 0.00 0.00 0.00 4.63
1785 1898 2.144833 TTTAGTGTTCGCCGCCTCGA 62.145 55.000 0.00 0.00 36.60 4.04
1786 1899 2.807631 TTAGTGTTCGCCGCCTCGAC 62.808 60.000 0.00 0.00 38.30 4.20
1790 1903 4.063967 TTCGCCGCCTCGACACAT 62.064 61.111 0.00 0.00 38.30 3.21
1791 1904 3.583276 TTCGCCGCCTCGACACATT 62.583 57.895 0.00 0.00 38.30 2.71
1792 1905 3.554692 CGCCGCCTCGACACATTC 61.555 66.667 0.00 0.00 0.00 2.67
1793 1906 3.195698 GCCGCCTCGACACATTCC 61.196 66.667 0.00 0.00 0.00 3.01
1794 1907 2.511600 CCGCCTCGACACATTCCC 60.512 66.667 0.00 0.00 0.00 3.97
1795 1908 2.511600 CGCCTCGACACATTCCCC 60.512 66.667 0.00 0.00 0.00 4.81
1796 1909 2.511600 GCCTCGACACATTCCCCG 60.512 66.667 0.00 0.00 0.00 5.73
1797 1910 2.186903 CCTCGACACATTCCCCGG 59.813 66.667 0.00 0.00 0.00 5.73
1798 1911 2.511600 CTCGACACATTCCCCGGC 60.512 66.667 0.00 0.00 0.00 6.13
1799 1912 3.309436 CTCGACACATTCCCCGGCA 62.309 63.158 0.00 0.00 0.00 5.69
1800 1913 2.124736 CGACACATTCCCCGGCAT 60.125 61.111 0.00 0.00 0.00 4.40
1801 1914 2.180204 CGACACATTCCCCGGCATC 61.180 63.158 0.00 0.00 0.00 3.91
1802 1915 2.124736 ACACATTCCCCGGCATCG 60.125 61.111 0.00 0.00 0.00 3.84
1803 1916 2.124736 CACATTCCCCGGCATCGT 60.125 61.111 0.00 0.00 33.95 3.73
1804 1917 2.180204 CACATTCCCCGGCATCGTC 61.180 63.158 0.00 0.00 33.95 4.20
1805 1918 2.591715 CATTCCCCGGCATCGTCC 60.592 66.667 0.00 0.00 33.95 4.79
1806 1919 3.873812 ATTCCCCGGCATCGTCCC 61.874 66.667 0.00 0.00 33.95 4.46
1820 1933 1.135024 TCGTCCCAATAACAGCCGTAC 60.135 52.381 0.00 0.00 0.00 3.67
1833 1946 3.119637 ACAGCCGTACCAATTGTAAATGC 60.120 43.478 4.43 1.80 0.00 3.56
1836 1949 3.733684 GCCGTACCAATTGTAAATGCCTG 60.734 47.826 4.43 0.00 0.00 4.85
1896 2009 8.447833 TGTTAAATCTGTCGAACATGGAAATAC 58.552 33.333 0.00 0.00 0.00 1.89
1900 2013 4.082408 TCTGTCGAACATGGAAATACGTCT 60.082 41.667 0.00 0.00 0.00 4.18
1904 2017 3.062099 CGAACATGGAAATACGTCTGTGG 59.938 47.826 0.00 0.00 0.00 4.17
1911 2024 1.737838 AATACGTCTGTGGCATGTGG 58.262 50.000 0.00 0.00 0.00 4.17
1915 2028 0.238289 CGTCTGTGGCATGTGGTTTC 59.762 55.000 0.00 0.00 0.00 2.78
1916 2029 1.609208 GTCTGTGGCATGTGGTTTCT 58.391 50.000 0.00 0.00 0.00 2.52
1938 2051 3.947196 TGCATTGTCTTCTTGTTGTCTGT 59.053 39.130 0.00 0.00 0.00 3.41
1939 2052 4.201940 TGCATTGTCTTCTTGTTGTCTGTG 60.202 41.667 0.00 0.00 0.00 3.66
1951 2064 6.710295 TCTTGTTGTCTGTGTATGTAGCAAAT 59.290 34.615 0.00 0.00 0.00 2.32
1958 2077 4.834534 TGTGTATGTAGCAAATACGGGTT 58.165 39.130 0.00 0.00 37.17 4.11
1966 2085 7.633193 TGTAGCAAATACGGGTTTTCATTAT 57.367 32.000 0.00 0.00 37.17 1.28
1986 2105 8.217111 TCATTATACAATCATGTGGCTTTAGGA 58.783 33.333 0.00 0.00 40.84 2.94
2014 2134 2.067365 ACCTTGTCTTGTTTGGGGAC 57.933 50.000 0.00 0.00 0.00 4.46
2045 2165 3.182967 GAGACAGTTCCATTCTAGTGCG 58.817 50.000 0.00 0.00 0.00 5.34
2066 2186 1.697432 TGAGGACGTCAAAAGACCCAT 59.303 47.619 18.91 0.00 29.64 4.00
2067 2187 2.105821 TGAGGACGTCAAAAGACCCATT 59.894 45.455 18.91 0.00 29.64 3.16
2085 2205 7.616935 AGACCCATTTATCACATGATCAAACTT 59.383 33.333 0.00 0.00 36.05 2.66
2103 2223 6.206634 TCAAACTTATGAAGGGTCACATTCAC 59.793 38.462 0.00 0.00 38.19 3.18
2144 2264 1.630148 CGACTCTTACCCTTGCTTCG 58.370 55.000 0.00 0.00 0.00 3.79
2145 2265 1.067776 CGACTCTTACCCTTGCTTCGT 60.068 52.381 0.00 0.00 0.00 3.85
2146 2266 2.609737 CGACTCTTACCCTTGCTTCGTT 60.610 50.000 0.00 0.00 0.00 3.85
2147 2267 2.994578 GACTCTTACCCTTGCTTCGTTC 59.005 50.000 0.00 0.00 0.00 3.95
2148 2268 2.633481 ACTCTTACCCTTGCTTCGTTCT 59.367 45.455 0.00 0.00 0.00 3.01
2149 2269 2.996621 CTCTTACCCTTGCTTCGTTCTG 59.003 50.000 0.00 0.00 0.00 3.02
2150 2270 2.367567 TCTTACCCTTGCTTCGTTCTGT 59.632 45.455 0.00 0.00 0.00 3.41
2151 2271 2.450609 TACCCTTGCTTCGTTCTGTC 57.549 50.000 0.00 0.00 0.00 3.51
2152 2272 0.250338 ACCCTTGCTTCGTTCTGTCC 60.250 55.000 0.00 0.00 0.00 4.02
2153 2273 0.035458 CCCTTGCTTCGTTCTGTCCT 59.965 55.000 0.00 0.00 0.00 3.85
2154 2274 1.543429 CCCTTGCTTCGTTCTGTCCTT 60.543 52.381 0.00 0.00 0.00 3.36
2155 2275 2.222027 CCTTGCTTCGTTCTGTCCTTT 58.778 47.619 0.00 0.00 0.00 3.11
2156 2276 2.224314 CCTTGCTTCGTTCTGTCCTTTC 59.776 50.000 0.00 0.00 0.00 2.62
2157 2277 2.910688 TGCTTCGTTCTGTCCTTTCT 57.089 45.000 0.00 0.00 0.00 2.52
2158 2278 4.307432 CTTGCTTCGTTCTGTCCTTTCTA 58.693 43.478 0.00 0.00 0.00 2.10
2159 2279 4.537135 TGCTTCGTTCTGTCCTTTCTAT 57.463 40.909 0.00 0.00 0.00 1.98
2160 2280 4.245660 TGCTTCGTTCTGTCCTTTCTATG 58.754 43.478 0.00 0.00 0.00 2.23
2161 2281 4.021456 TGCTTCGTTCTGTCCTTTCTATGA 60.021 41.667 0.00 0.00 0.00 2.15
2162 2282 4.929808 GCTTCGTTCTGTCCTTTCTATGAA 59.070 41.667 0.00 0.00 0.00 2.57
2163 2283 5.062809 GCTTCGTTCTGTCCTTTCTATGAAG 59.937 44.000 0.00 0.00 33.93 3.02
2164 2284 5.073311 TCGTTCTGTCCTTTCTATGAAGG 57.927 43.478 0.00 0.00 46.17 3.46
2177 2297 8.961294 CTTTCTATGAAGGATCAAATCTCTGT 57.039 34.615 0.00 0.00 39.49 3.41
2178 2298 8.954950 TTTCTATGAAGGATCAAATCTCTGTC 57.045 34.615 0.00 0.00 39.49 3.51
2179 2299 7.666063 TCTATGAAGGATCAAATCTCTGTCA 57.334 36.000 0.00 0.00 39.49 3.58
2180 2300 7.495901 TCTATGAAGGATCAAATCTCTGTCAC 58.504 38.462 0.00 0.00 39.49 3.67
2181 2301 5.752036 TGAAGGATCAAATCTCTGTCACT 57.248 39.130 0.00 0.00 30.99 3.41
2182 2302 5.485620 TGAAGGATCAAATCTCTGTCACTG 58.514 41.667 0.00 0.00 30.99 3.66
2183 2303 5.012458 TGAAGGATCAAATCTCTGTCACTGT 59.988 40.000 0.00 0.00 30.99 3.55
2184 2304 6.211384 TGAAGGATCAAATCTCTGTCACTGTA 59.789 38.462 0.00 0.00 30.99 2.74
2185 2305 6.805016 AGGATCAAATCTCTGTCACTGTAT 57.195 37.500 0.00 0.00 0.00 2.29
2186 2306 7.904558 AGGATCAAATCTCTGTCACTGTATA 57.095 36.000 0.00 0.00 0.00 1.47
2187 2307 8.489676 AGGATCAAATCTCTGTCACTGTATAT 57.510 34.615 0.00 0.00 0.00 0.86
2188 2308 8.932610 AGGATCAAATCTCTGTCACTGTATATT 58.067 33.333 0.00 0.00 0.00 1.28
2189 2309 9.202273 GGATCAAATCTCTGTCACTGTATATTC 57.798 37.037 0.00 0.00 0.00 1.75
2190 2310 9.202273 GATCAAATCTCTGTCACTGTATATTCC 57.798 37.037 0.00 0.00 0.00 3.01
2191 2311 8.311395 TCAAATCTCTGTCACTGTATATTCCT 57.689 34.615 0.00 0.00 0.00 3.36
2192 2312 8.762645 TCAAATCTCTGTCACTGTATATTCCTT 58.237 33.333 0.00 0.00 0.00 3.36
2193 2313 9.039870 CAAATCTCTGTCACTGTATATTCCTTC 57.960 37.037 0.00 0.00 0.00 3.46
2194 2314 6.378710 TCTCTGTCACTGTATATTCCTTCG 57.621 41.667 0.00 0.00 0.00 3.79
2295 2415 2.768253 CAGTGCTATCCAGTGTCCAA 57.232 50.000 0.00 0.00 39.55 3.53
2299 2419 1.339055 TGCTATCCAGTGTCCAACAGC 60.339 52.381 0.00 0.00 0.00 4.40
2315 2436 9.023962 TGTCCAACAGCTGAAAAATAAATAGAT 57.976 29.630 23.35 0.00 0.00 1.98
2338 2459 6.258230 TCTGACCATGCTAAATTCAAGTTG 57.742 37.500 0.00 0.00 0.00 3.16
2369 2490 5.261216 TCCGTGCAGTGAGATATATGGATA 58.739 41.667 0.00 0.00 0.00 2.59
2401 2526 4.457834 AGTCTCATGGTTAGCACACTAC 57.542 45.455 0.00 0.00 0.00 2.73
2405 2530 5.020795 TCTCATGGTTAGCACACTACCTTA 58.979 41.667 0.00 0.00 0.00 2.69
2461 2586 4.321718 CCCATATTACAGAGTGCCAGATG 58.678 47.826 0.00 0.00 0.00 2.90
2465 2590 6.319658 CCATATTACAGAGTGCCAGATGTTTT 59.680 38.462 0.00 0.00 0.00 2.43
2497 2633 7.175816 TGCTTAGCACTAACAAACATTCCAATA 59.824 33.333 1.39 0.00 31.71 1.90
2499 2635 9.507280 CTTAGCACTAACAAACATTCCAATATG 57.493 33.333 0.00 0.00 0.00 1.78
2530 2666 6.988580 CAGCTGATTATGATCTTACTGGACAA 59.011 38.462 8.42 0.00 33.28 3.18
2614 2750 3.262405 AGGGGCGTTCACTAATTGAGTTA 59.738 43.478 0.00 0.00 35.64 2.24
2677 2829 9.467258 CACTTCAAATTGTGATCTTACAAACAT 57.533 29.630 3.02 0.00 43.13 2.71
2805 2957 9.807921 ATTTAAACCTTCAGAATCTTCCAGTTA 57.192 29.630 0.00 0.00 0.00 2.24
2841 2993 7.600065 AGAATGATTTTGAGACTTTCACATGG 58.400 34.615 0.00 0.00 34.94 3.66
2895 3052 8.341903 CGTAGCAATTTGTGTATATGAATTGGA 58.658 33.333 9.02 0.00 38.98 3.53
2927 3084 6.529125 GGCATCAACATTTTTCAGTCTATGTG 59.471 38.462 0.00 0.00 31.98 3.21
2932 3089 7.498900 TCAACATTTTTCAGTCTATGTGTCAGT 59.501 33.333 0.00 0.00 31.98 3.41
2933 3090 7.426929 ACATTTTTCAGTCTATGTGTCAGTC 57.573 36.000 0.00 0.00 30.51 3.51
2934 3091 6.992123 ACATTTTTCAGTCTATGTGTCAGTCA 59.008 34.615 0.00 0.00 30.51 3.41
2935 3092 7.498900 ACATTTTTCAGTCTATGTGTCAGTCAA 59.501 33.333 0.00 0.00 30.51 3.18
2954 3111 4.997395 GTCAACAATCATCCAGTGTACTGT 59.003 41.667 10.80 0.00 42.27 3.55
2992 3149 8.668510 TGCTAGACCTAGAAATCAAATTCATC 57.331 34.615 8.16 0.00 35.21 2.92
2999 3156 9.347240 ACCTAGAAATCAAATTCATCGATCATT 57.653 29.630 0.00 0.00 0.00 2.57
3010 3167 5.541098 TCATCGATCATTAATGATGCAGC 57.459 39.130 30.86 17.31 46.84 5.25
3055 3212 2.236146 AGTCTGTCCGGCAACAATCATA 59.764 45.455 0.00 0.00 0.00 2.15
3109 3267 8.253810 AGAACTAGAAATCGACTTCATTGATCA 58.746 33.333 9.55 0.00 30.25 2.92
3124 3282 6.987386 TCATTGATCATAAATGATGCATGCA 58.013 32.000 25.04 25.04 46.84 3.96
3677 3835 6.849305 CACGAACCAAAGTGTATGTACTTTTC 59.151 38.462 6.46 3.09 45.85 2.29
4023 4193 7.212274 GCACTCATGGATAAAATTGCCTAAAT 58.788 34.615 0.00 0.00 0.00 1.40
4222 4408 2.966309 GAACCTCTGCCGGTTTGCG 61.966 63.158 1.90 0.00 46.85 4.85
4273 4459 5.298276 TCCTTTATCAGTTTGTCGCTTGTTT 59.702 36.000 0.00 0.00 0.00 2.83
4354 4540 5.569441 CGTTCCTGAGCATATAGAATGTACG 59.431 44.000 0.00 0.00 0.00 3.67
4444 4630 1.134670 GGTATGGTCAGAGTGTCCTGC 60.135 57.143 0.00 0.00 34.28 4.85
4574 4760 4.481930 TTTTGCAAGGTCGTCATAACTG 57.518 40.909 0.00 0.00 0.00 3.16
4575 4761 2.093306 TGCAAGGTCGTCATAACTGG 57.907 50.000 0.00 0.00 0.00 4.00
4596 4782 5.265191 TGGTACAAGTGAGATCTTAGAGCT 58.735 41.667 0.00 0.00 31.92 4.09
4614 4800 5.892568 AGAGCTACCGTGACACTTTAATAG 58.107 41.667 3.68 0.06 0.00 1.73
4678 4864 9.675464 TGTTCTCCAACTAACTTTCTTTCTTTA 57.325 29.630 0.00 0.00 33.17 1.85
4769 4955 8.128322 TCTTAACTAAGATGCTTGTCTTCTCT 57.872 34.615 3.43 0.00 39.15 3.10
4823 5009 2.422276 AGCTGAAAAACGTGGAATGC 57.578 45.000 0.00 0.00 0.00 3.56
4952 5138 3.276857 CCATCAGACAGGAACAAGATGG 58.723 50.000 0.00 0.00 44.35 3.51
4963 5149 0.985490 ACAAGATGGGGAGCCTCCTC 60.985 60.000 11.29 7.32 37.60 3.71
4991 5177 1.544246 GAAAGCCAATGTTACCGCCTT 59.456 47.619 0.00 0.00 0.00 4.35
5036 5222 4.160439 TGAACATGATGTGGTCTCTAGTCC 59.840 45.833 0.00 0.00 45.16 3.85
5069 5255 2.238521 TCCATGGGAGAAAACAGTTGC 58.761 47.619 13.02 0.00 0.00 4.17
5077 5263 3.179048 GAGAAAACAGTTGCACAACACC 58.821 45.455 15.40 0.00 43.47 4.16
5132 5322 7.124347 TCAGCGTAACTTTTAAATGATTCGT 57.876 32.000 8.00 0.00 0.00 3.85
5141 5331 2.357327 AAATGATTCGTCGGTCGTGA 57.643 45.000 0.00 0.00 40.80 4.35
5173 5363 1.668419 AATCAAGAAGCGATTCGGGG 58.332 50.000 7.91 1.80 0.00 5.73
5174 5364 0.541863 ATCAAGAAGCGATTCGGGGT 59.458 50.000 7.91 0.00 0.00 4.95
5175 5365 0.108329 TCAAGAAGCGATTCGGGGTC 60.108 55.000 7.91 0.00 0.00 4.46
5176 5366 0.391130 CAAGAAGCGATTCGGGGTCA 60.391 55.000 7.91 0.00 0.00 4.02
5177 5367 0.391263 AAGAAGCGATTCGGGGTCAC 60.391 55.000 7.91 0.00 0.00 3.67
5178 5368 2.125673 AAGCGATTCGGGGTCACG 60.126 61.111 8.34 0.00 0.00 4.35
5179 5369 2.552585 GAAGCGATTCGGGGTCACGA 62.553 60.000 8.34 0.00 41.76 4.35
5195 5389 3.696426 GAGCATCGCATCGCCGTC 61.696 66.667 0.00 0.00 0.00 4.79
5270 5464 1.500474 TGAAGGCCCTTGATCGAGAT 58.500 50.000 11.89 0.00 0.00 2.75
5277 5471 3.065655 GCCCTTGATCGAGATGATTCAG 58.934 50.000 11.89 0.00 37.47 3.02
5279 5473 4.056740 CCCTTGATCGAGATGATTCAGTG 58.943 47.826 11.89 0.00 37.47 3.66
5283 5477 4.941657 TGATCGAGATGATTCAGTGAAGG 58.058 43.478 11.91 0.00 37.47 3.46
5285 5479 4.645762 TCGAGATGATTCAGTGAAGGAG 57.354 45.455 11.91 0.00 0.00 3.69
5313 5507 3.817084 GCCAGAAGCAGTTGCATCATATA 59.183 43.478 11.36 0.00 45.16 0.86
5317 5511 6.204359 CAGAAGCAGTTGCATCATATAAACC 58.796 40.000 11.36 0.00 45.16 3.27
5365 5563 0.463474 GGCCTGAAGATGCTCTGGAC 60.463 60.000 0.00 0.00 36.74 4.02
5400 5598 0.462047 CTTGGCGCCACCTAGGTAAG 60.462 60.000 32.95 17.96 37.61 2.34
5445 5644 7.064229 TGAATCAATGAATCTTCATCATCCCA 58.936 34.615 5.92 1.05 46.60 4.37
5446 5645 7.728532 TGAATCAATGAATCTTCATCATCCCAT 59.271 33.333 5.92 0.00 46.60 4.00
5447 5646 8.492415 AATCAATGAATCTTCATCATCCCATT 57.508 30.769 5.92 0.00 46.60 3.16
5457 5656 1.405872 TCATCCCATTCCTGCATTGC 58.594 50.000 0.46 0.46 0.00 3.56
5463 5662 2.420568 ATTCCTGCATTGCCCTGCG 61.421 57.895 6.12 0.00 45.30 5.18
5465 5664 3.818787 CCTGCATTGCCCTGCGAC 61.819 66.667 6.12 0.00 45.30 5.19
5560 5760 3.601981 GCCACGTAGCGAATCTCG 58.398 61.111 0.00 0.00 43.89 4.04
5603 5803 0.685785 CCCTAGTCAGCAGAGCAGGA 60.686 60.000 7.34 0.00 30.69 3.86
5657 5983 1.543358 GGCTTTGCCTTCCTTCTTCTG 59.457 52.381 0.73 0.00 46.69 3.02
5691 6017 1.502163 CGAGATTTGGAGCCATCGCC 61.502 60.000 0.00 0.00 34.57 5.54
5713 6039 1.303799 CGCTGATGCTGCCAAGAAGT 61.304 55.000 0.00 0.00 36.97 3.01
5715 6041 1.817357 CTGATGCTGCCAAGAAGTGA 58.183 50.000 0.00 0.00 0.00 3.41
5716 6042 2.156917 CTGATGCTGCCAAGAAGTGAA 58.843 47.619 0.00 0.00 0.00 3.18
5738 6064 2.280524 TCACGAAACTGTGCCGGG 60.281 61.111 2.18 0.00 39.73 5.73
5770 6096 2.872557 CTGATGCGTTGCACTGGG 59.127 61.111 0.00 0.00 43.04 4.45
5773 6099 4.972733 ATGCGTTGCACTGGGCCA 62.973 61.111 5.85 5.85 43.04 5.36
5794 6120 1.937108 GCCTTCCGCTATGATCCGAAG 60.937 57.143 0.00 0.00 0.00 3.79
5797 6123 0.827925 TCCGCTATGATCCGAAGCCT 60.828 55.000 5.70 0.00 32.50 4.58
5799 6125 0.315251 CGCTATGATCCGAAGCCTGA 59.685 55.000 5.70 0.00 32.50 3.86
5862 6200 2.910688 TTCGATTACAGGGAGATGCC 57.089 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.642919 GGAGATTGCCTATGATTCTGATGTC 59.357 44.000 0.00 0.00 0.00 3.06
9 10 5.411977 GTGGAGATTGCCTATGATTCTGATG 59.588 44.000 0.00 0.00 0.00 3.07
18 19 3.209410 GTTCCTGTGGAGATTGCCTATG 58.791 50.000 0.00 0.00 31.21 2.23
22 23 1.003580 TCTGTTCCTGTGGAGATTGCC 59.996 52.381 0.00 0.00 31.21 4.52
30 31 1.302832 GGGCTGTCTGTTCCTGTGG 60.303 63.158 0.00 0.00 0.00 4.17
45 46 1.539827 GGTAGTTGTGAACATGTGGGC 59.460 52.381 0.00 0.00 0.00 5.36
49 50 1.418637 ACGGGGTAGTTGTGAACATGT 59.581 47.619 0.00 0.00 0.00 3.21
51 52 3.516300 TCATACGGGGTAGTTGTGAACAT 59.484 43.478 0.00 0.00 0.00 2.71
58 59 5.909477 TCAATAGTTCATACGGGGTAGTTG 58.091 41.667 0.00 0.00 0.00 3.16
65 66 4.755123 GGGTTCATCAATAGTTCATACGGG 59.245 45.833 0.00 0.00 0.00 5.28
87 88 7.615582 TTATGTCATTAGCTTTGAGAACAGG 57.384 36.000 0.00 0.00 0.00 4.00
88 89 8.671921 ACATTATGTCATTAGCTTTGAGAACAG 58.328 33.333 0.00 0.00 0.00 3.16
89 90 8.453320 CACATTATGTCATTAGCTTTGAGAACA 58.547 33.333 0.00 0.00 0.00 3.18
90 91 8.668353 TCACATTATGTCATTAGCTTTGAGAAC 58.332 33.333 0.00 0.00 0.00 3.01
91 92 8.668353 GTCACATTATGTCATTAGCTTTGAGAA 58.332 33.333 0.00 0.00 0.00 2.87
93 94 7.977904 TGTCACATTATGTCATTAGCTTTGAG 58.022 34.615 0.00 0.00 0.00 3.02
94 95 7.920160 TGTCACATTATGTCATTAGCTTTGA 57.080 32.000 0.00 0.00 0.00 2.69
95 96 8.400186 TGATGTCACATTATGTCATTAGCTTTG 58.600 33.333 0.00 0.00 37.22 2.77
96 97 8.510243 TGATGTCACATTATGTCATTAGCTTT 57.490 30.769 0.00 0.00 37.22 3.51
103 104 8.337532 CACGTTAATGATGTCACATTATGTCAT 58.662 33.333 0.58 0.00 40.73 3.06
104 105 7.676104 GCACGTTAATGATGTCACATTATGTCA 60.676 37.037 0.58 0.00 40.73 3.58
105 106 6.628856 GCACGTTAATGATGTCACATTATGTC 59.371 38.462 0.58 0.00 40.73 3.06
106 107 6.093357 TGCACGTTAATGATGTCACATTATGT 59.907 34.615 0.58 0.00 40.73 2.29
107 108 6.411782 GTGCACGTTAATGATGTCACATTATG 59.588 38.462 0.00 0.00 40.73 1.90
114 115 2.741517 CAGGTGCACGTTAATGATGTCA 59.258 45.455 9.81 0.00 0.00 3.58
116 117 3.052455 TCAGGTGCACGTTAATGATGT 57.948 42.857 9.81 0.00 0.00 3.06
117 118 4.319046 GCTATCAGGTGCACGTTAATGATG 60.319 45.833 20.78 14.81 0.00 3.07
133 134 4.343526 AGTTCTGTCCCATAGTGCTATCAG 59.656 45.833 0.00 0.00 0.00 2.90
134 135 4.290093 AGTTCTGTCCCATAGTGCTATCA 58.710 43.478 0.00 0.00 0.00 2.15
135 136 4.946478 AGTTCTGTCCCATAGTGCTATC 57.054 45.455 0.00 0.00 0.00 2.08
184 188 1.715519 CTTTTCGAATTTGGCGTGCTG 59.284 47.619 0.00 0.00 0.00 4.41
195 199 6.642707 TTACCAATGTTCCACTTTTCGAAT 57.357 33.333 0.00 0.00 0.00 3.34
197 201 6.452494 TTTTACCAATGTTCCACTTTTCGA 57.548 33.333 0.00 0.00 0.00 3.71
199 203 6.019398 CGGTTTTTACCAATGTTCCACTTTTC 60.019 38.462 0.00 0.00 0.00 2.29
206 210 6.020971 AGAATCGGTTTTTACCAATGTTCC 57.979 37.500 0.00 0.00 0.00 3.62
207 211 7.436970 ACAAAGAATCGGTTTTTACCAATGTTC 59.563 33.333 0.00 0.00 0.00 3.18
231 236 2.752939 CCATCTGCGCGATTGCACA 61.753 57.895 12.10 0.00 40.62 4.57
235 240 0.234106 GACATCCATCTGCGCGATTG 59.766 55.000 12.10 8.89 0.00 2.67
238 243 1.083806 GTTGACATCCATCTGCGCGA 61.084 55.000 12.10 3.27 0.00 5.87
262 268 8.947055 AATTTAAGAAATTGGGATTCGATTGG 57.053 30.769 0.00 0.00 39.50 3.16
291 297 8.410673 TGGTAGATTCTAAGCTAGTAGAATGG 57.589 38.462 20.47 0.00 46.25 3.16
296 302 8.904834 TCTTGTTGGTAGATTCTAAGCTAGTAG 58.095 37.037 0.00 0.00 0.00 2.57
297 303 8.818622 TCTTGTTGGTAGATTCTAAGCTAGTA 57.181 34.615 0.00 0.00 0.00 1.82
298 304 7.719871 TCTTGTTGGTAGATTCTAAGCTAGT 57.280 36.000 0.00 0.00 0.00 2.57
316 322 3.321968 GGGGTTCAGATTTGCTTCTTGTT 59.678 43.478 0.00 0.00 0.00 2.83
320 326 1.428912 TGGGGGTTCAGATTTGCTTCT 59.571 47.619 0.00 0.00 0.00 2.85
321 327 1.923356 TGGGGGTTCAGATTTGCTTC 58.077 50.000 0.00 0.00 0.00 3.86
334 340 2.106857 TGTTATTCGTTCAGTTGGGGGT 59.893 45.455 0.00 0.00 0.00 4.95
348 373 8.795786 TGCAAGTTGTTCTTATTGTGTTATTC 57.204 30.769 4.48 0.00 34.66 1.75
368 396 1.265905 GGTGGTCGTTTAGGTTGCAAG 59.734 52.381 0.00 0.00 0.00 4.01
387 415 2.996168 CTTAGATCTTGGGCGGGCGG 62.996 65.000 0.00 0.00 0.00 6.13
471 501 2.602676 TTCTCGCCTCCCCCTTTGG 61.603 63.158 0.00 0.00 0.00 3.28
495 528 1.218316 CCTCCAAGCAGGTACGACC 59.782 63.158 0.00 0.00 38.99 4.79
497 530 4.533318 ACCTCCAAGCAGGTACGA 57.467 55.556 0.00 0.00 45.71 3.43
620 653 2.351322 CGTCTGATCTCGTCGGCG 60.351 66.667 1.15 1.15 39.92 6.46
621 654 2.652496 GCGTCTGATCTCGTCGGC 60.652 66.667 0.00 0.00 32.95 5.54
622 655 2.024871 GGCGTCTGATCTCGTCGG 59.975 66.667 0.00 0.00 34.31 4.79
637 670 4.459089 AAGGAGAAGAGCGGCGGC 62.459 66.667 9.78 8.43 40.37 6.53
638 671 2.202810 GAAGGAGAAGAGCGGCGG 60.203 66.667 9.78 0.00 0.00 6.13
680 713 0.959553 TGGAAGCGTCTCGTTCTCTT 59.040 50.000 0.00 0.00 0.00 2.85
681 714 0.241481 GTGGAAGCGTCTCGTTCTCT 59.759 55.000 0.00 0.00 0.00 3.10
682 715 0.039437 TGTGGAAGCGTCTCGTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
683 716 0.318784 GTGTGGAAGCGTCTCGTTCT 60.319 55.000 0.00 0.00 0.00 3.01
689 722 0.039074 CGAAGAGTGTGGAAGCGTCT 60.039 55.000 0.00 0.00 0.00 4.18
826 859 2.674380 CACCAAGCAGCTGGGTCC 60.674 66.667 19.88 0.00 35.20 4.46
845 878 0.464452 CCTTAACTGGGCCGGAGTAG 59.536 60.000 21.81 11.90 0.00 2.57
896 929 1.683441 GTTGGATTGGACCCTCGGT 59.317 57.895 0.00 0.00 39.44 4.69
944 986 2.743538 CGCAGCAGCAGGTTAGCA 60.744 61.111 0.82 0.00 42.27 3.49
945 987 3.503363 CCGCAGCAGCAGGTTAGC 61.503 66.667 0.82 0.00 42.27 3.09
946 988 2.046892 ACCGCAGCAGCAGGTTAG 60.047 61.111 10.83 0.00 42.27 2.34
947 989 2.047274 GACCGCAGCAGCAGGTTA 60.047 61.111 16.10 0.00 43.98 2.85
991 1033 4.925861 GCCCGCCATCTCTCAGCC 62.926 72.222 0.00 0.00 0.00 4.85
1068 1110 2.099141 TGCGGTTCATGAAGAAGGAG 57.901 50.000 8.80 0.00 36.78 3.69
1116 1158 2.282180 GGGAAAGGCTGCAACCGA 60.282 61.111 0.50 0.00 33.69 4.69
1118 1160 3.373565 CCGGGAAAGGCTGCAACC 61.374 66.667 0.00 0.00 0.00 3.77
1119 1161 2.597510 ACCGGGAAAGGCTGCAAC 60.598 61.111 6.32 0.00 33.69 4.17
1120 1162 2.597217 CACCGGGAAAGGCTGCAA 60.597 61.111 6.32 0.00 33.69 4.08
1121 1163 3.551496 CTCACCGGGAAAGGCTGCA 62.551 63.158 6.32 0.00 33.69 4.41
1123 1165 2.747855 GCTCACCGGGAAAGGCTG 60.748 66.667 6.32 0.00 33.69 4.85
1124 1166 2.930562 AGCTCACCGGGAAAGGCT 60.931 61.111 6.32 5.07 33.69 4.58
1125 1167 2.747855 CAGCTCACCGGGAAAGGC 60.748 66.667 6.32 2.49 33.69 4.35
1127 1169 2.045926 CCCAGCTCACCGGGAAAG 60.046 66.667 6.32 0.26 46.34 2.62
1128 1170 2.852075 ACCCAGCTCACCGGGAAA 60.852 61.111 13.66 0.00 46.34 3.13
1132 1174 3.234630 TTTCGACCCAGCTCACCGG 62.235 63.158 0.00 0.00 0.00 5.28
1134 1176 2.035442 GCTTTCGACCCAGCTCACC 61.035 63.158 3.65 0.00 32.87 4.02
1135 1177 0.603975 AAGCTTTCGACCCAGCTCAC 60.604 55.000 12.21 0.00 46.01 3.51
1136 1178 0.108585 AAAGCTTTCGACCCAGCTCA 59.891 50.000 5.69 0.00 46.01 4.26
1137 1179 1.068954 CAAAAGCTTTCGACCCAGCTC 60.069 52.381 13.10 0.00 46.01 4.09
1140 1182 1.600413 GCACAAAAGCTTTCGACCCAG 60.600 52.381 13.10 0.24 0.00 4.45
1141 1183 0.383949 GCACAAAAGCTTTCGACCCA 59.616 50.000 13.10 0.00 0.00 4.51
1143 1185 3.619233 TTAGCACAAAAGCTTTCGACC 57.381 42.857 13.10 2.14 43.70 4.79
1144 1186 5.164282 CGAAATTAGCACAAAAGCTTTCGAC 60.164 40.000 13.10 2.86 44.97 4.20
1146 1188 4.675114 ACGAAATTAGCACAAAAGCTTTCG 59.325 37.500 13.10 15.46 46.25 3.46
1155 1256 2.881513 TCCAGCAACGAAATTAGCACAA 59.118 40.909 0.00 0.00 0.00 3.33
1157 1258 3.764885 ATCCAGCAACGAAATTAGCAC 57.235 42.857 0.00 0.00 0.00 4.40
1162 1263 2.612721 GCCCAAATCCAGCAACGAAATT 60.613 45.455 0.00 0.00 0.00 1.82
1266 1367 1.098869 GCAAGGAAGAAGCTAAGGGC 58.901 55.000 0.00 0.00 42.19 5.19
1360 1462 1.825474 GAGCTAGTAGCAAGACCCACA 59.175 52.381 23.77 0.00 45.56 4.17
1362 1464 1.103803 CGAGCTAGTAGCAAGACCCA 58.896 55.000 23.77 0.00 45.56 4.51
1372 1474 7.154435 AGATTTTACACAGAACGAGCTAGTA 57.846 36.000 0.00 0.00 0.00 1.82
1425 1532 3.766591 CCCTCTTCTGCTCTGAACTAAGA 59.233 47.826 0.00 0.00 0.00 2.10
1433 1540 0.469070 CCATCCCCTCTTCTGCTCTG 59.531 60.000 0.00 0.00 0.00 3.35
1459 1566 6.672836 GCACAAAATGTTCAAGTTCAACCAAG 60.673 38.462 0.00 0.00 0.00 3.61
1460 1567 5.121454 GCACAAAATGTTCAAGTTCAACCAA 59.879 36.000 0.00 0.00 0.00 3.67
1461 1568 4.629200 GCACAAAATGTTCAAGTTCAACCA 59.371 37.500 0.00 0.00 0.00 3.67
1462 1569 4.869861 AGCACAAAATGTTCAAGTTCAACC 59.130 37.500 0.00 0.00 0.00 3.77
1463 1570 6.751888 AGTAGCACAAAATGTTCAAGTTCAAC 59.248 34.615 0.00 0.00 0.00 3.18
1465 1572 6.094742 TGAGTAGCACAAAATGTTCAAGTTCA 59.905 34.615 0.00 0.00 0.00 3.18
1466 1573 6.494842 TGAGTAGCACAAAATGTTCAAGTTC 58.505 36.000 0.00 0.00 0.00 3.01
1467 1574 6.449635 TGAGTAGCACAAAATGTTCAAGTT 57.550 33.333 0.00 0.00 0.00 2.66
1468 1575 6.095440 ACTTGAGTAGCACAAAATGTTCAAGT 59.905 34.615 16.13 16.13 44.96 3.16
1469 1576 6.498304 ACTTGAGTAGCACAAAATGTTCAAG 58.502 36.000 15.22 15.22 43.47 3.02
1470 1577 6.449635 ACTTGAGTAGCACAAAATGTTCAA 57.550 33.333 0.00 0.00 0.00 2.69
1471 1578 6.449635 AACTTGAGTAGCACAAAATGTTCA 57.550 33.333 0.00 0.00 0.00 3.18
1472 1579 7.639945 ACTAACTTGAGTAGCACAAAATGTTC 58.360 34.615 0.00 0.00 0.00 3.18
1473 1580 7.568199 ACTAACTTGAGTAGCACAAAATGTT 57.432 32.000 0.00 0.00 0.00 2.71
1475 1582 8.556194 TGTAACTAACTTGAGTAGCACAAAATG 58.444 33.333 0.00 0.00 0.00 2.32
1476 1583 8.671384 TGTAACTAACTTGAGTAGCACAAAAT 57.329 30.769 0.00 0.00 0.00 1.82
1477 1584 8.556194 CATGTAACTAACTTGAGTAGCACAAAA 58.444 33.333 0.00 0.00 35.72 2.44
1486 1593 7.363617 GGGCTACTACATGTAACTAACTTGAGT 60.364 40.741 7.06 1.58 36.86 3.41
1507 1614 5.540400 ACACGTAGCATTATTTAGGGCTA 57.460 39.130 0.00 0.00 37.79 3.93
1508 1615 4.417426 ACACGTAGCATTATTTAGGGCT 57.583 40.909 0.00 0.00 40.26 5.19
1509 1616 6.204108 ACATAACACGTAGCATTATTTAGGGC 59.796 38.462 0.00 0.00 0.00 5.19
1510 1617 7.724305 ACATAACACGTAGCATTATTTAGGG 57.276 36.000 0.00 0.00 0.00 3.53
1511 1618 8.822855 TGAACATAACACGTAGCATTATTTAGG 58.177 33.333 0.00 0.00 0.00 2.69
1514 1621 8.726988 ACTTGAACATAACACGTAGCATTATTT 58.273 29.630 0.00 0.00 0.00 1.40
1515 1622 8.263940 ACTTGAACATAACACGTAGCATTATT 57.736 30.769 0.00 0.00 0.00 1.40
1516 1623 7.843490 ACTTGAACATAACACGTAGCATTAT 57.157 32.000 0.00 0.00 0.00 1.28
1517 1624 7.385478 TGAACTTGAACATAACACGTAGCATTA 59.615 33.333 0.00 0.00 0.00 1.90
1518 1625 6.203915 TGAACTTGAACATAACACGTAGCATT 59.796 34.615 0.00 0.00 0.00 3.56
1519 1626 5.699001 TGAACTTGAACATAACACGTAGCAT 59.301 36.000 0.00 0.00 0.00 3.79
1520 1627 5.051153 TGAACTTGAACATAACACGTAGCA 58.949 37.500 0.00 0.00 0.00 3.49
1521 1628 5.585500 TGAACTTGAACATAACACGTAGC 57.415 39.130 0.00 0.00 0.00 3.58
1522 1629 6.360329 GGTTGAACTTGAACATAACACGTAG 58.640 40.000 0.00 0.00 0.00 3.51
1523 1630 5.236911 GGGTTGAACTTGAACATAACACGTA 59.763 40.000 0.00 0.00 0.00 3.57
1524 1631 4.035909 GGGTTGAACTTGAACATAACACGT 59.964 41.667 0.00 0.00 0.00 4.49
1525 1632 4.035792 TGGGTTGAACTTGAACATAACACG 59.964 41.667 0.00 0.00 0.00 4.49
1526 1633 5.508200 TGGGTTGAACTTGAACATAACAC 57.492 39.130 0.00 0.00 0.00 3.32
1527 1634 5.654650 AGTTGGGTTGAACTTGAACATAACA 59.345 36.000 0.00 0.00 31.92 2.41
1528 1635 6.144078 AGTTGGGTTGAACTTGAACATAAC 57.856 37.500 0.00 0.00 31.92 1.89
1529 1636 6.783708 AAGTTGGGTTGAACTTGAACATAA 57.216 33.333 0.00 0.00 43.14 1.90
1537 1644 3.883489 GCTACTCAAGTTGGGTTGAACTT 59.117 43.478 19.71 0.00 45.17 2.66
1538 1645 3.477530 GCTACTCAAGTTGGGTTGAACT 58.522 45.455 19.71 0.00 36.01 3.01
1539 1646 2.552743 GGCTACTCAAGTTGGGTTGAAC 59.447 50.000 19.71 8.68 36.01 3.18
1540 1647 2.488347 GGGCTACTCAAGTTGGGTTGAA 60.488 50.000 19.71 0.00 36.01 2.69
1541 1648 1.073284 GGGCTACTCAAGTTGGGTTGA 59.927 52.381 19.71 0.00 30.82 3.18
1542 1649 1.073923 AGGGCTACTCAAGTTGGGTTG 59.926 52.381 14.89 13.47 30.82 3.77
1543 1650 1.446016 AGGGCTACTCAAGTTGGGTT 58.554 50.000 14.89 0.00 30.82 4.11
1544 1651 2.305052 GTTAGGGCTACTCAAGTTGGGT 59.695 50.000 14.03 14.03 34.11 4.51
1545 1652 2.355818 GGTTAGGGCTACTCAAGTTGGG 60.356 54.545 0.00 0.00 0.00 4.12
1546 1653 2.572104 AGGTTAGGGCTACTCAAGTTGG 59.428 50.000 2.34 0.00 0.00 3.77
1547 1654 3.983044 AGGTTAGGGCTACTCAAGTTG 57.017 47.619 0.00 0.00 0.00 3.16
1548 1655 3.908103 TCAAGGTTAGGGCTACTCAAGTT 59.092 43.478 0.00 0.00 0.00 2.66
1549 1656 3.261137 GTCAAGGTTAGGGCTACTCAAGT 59.739 47.826 0.00 0.00 0.00 3.16
1550 1657 3.369576 GGTCAAGGTTAGGGCTACTCAAG 60.370 52.174 0.00 0.00 0.00 3.02
1551 1658 2.570302 GGTCAAGGTTAGGGCTACTCAA 59.430 50.000 0.00 0.00 0.00 3.02
1552 1659 2.185387 GGTCAAGGTTAGGGCTACTCA 58.815 52.381 0.00 0.00 0.00 3.41
1553 1660 1.136500 CGGTCAAGGTTAGGGCTACTC 59.864 57.143 0.00 0.00 0.00 2.59
1554 1661 1.192428 CGGTCAAGGTTAGGGCTACT 58.808 55.000 0.00 0.00 0.00 2.57
1555 1662 0.900421 ACGGTCAAGGTTAGGGCTAC 59.100 55.000 0.00 0.00 0.00 3.58
1556 1663 1.188863 GACGGTCAAGGTTAGGGCTA 58.811 55.000 2.62 0.00 0.00 3.93
1557 1664 1.885163 CGACGGTCAAGGTTAGGGCT 61.885 60.000 9.10 0.00 0.00 5.19
1558 1665 1.447314 CGACGGTCAAGGTTAGGGC 60.447 63.158 9.10 0.00 0.00 5.19
1559 1666 0.172803 CTCGACGGTCAAGGTTAGGG 59.827 60.000 9.10 0.00 0.00 3.53
1560 1667 0.886563 ACTCGACGGTCAAGGTTAGG 59.113 55.000 9.10 0.00 0.00 2.69
1561 1668 2.159462 GGTACTCGACGGTCAAGGTTAG 60.159 54.545 9.10 0.00 0.00 2.34
1562 1669 1.812571 GGTACTCGACGGTCAAGGTTA 59.187 52.381 9.10 0.00 0.00 2.85
1563 1670 0.600057 GGTACTCGACGGTCAAGGTT 59.400 55.000 9.10 0.00 0.00 3.50
1564 1671 0.538057 TGGTACTCGACGGTCAAGGT 60.538 55.000 9.10 5.99 0.00 3.50
1565 1672 0.599558 TTGGTACTCGACGGTCAAGG 59.400 55.000 9.10 0.07 0.00 3.61
1566 1673 2.649331 ATTGGTACTCGACGGTCAAG 57.351 50.000 9.10 1.12 0.00 3.02
1567 1674 4.724074 AATATTGGTACTCGACGGTCAA 57.276 40.909 9.10 0.00 0.00 3.18
1568 1675 4.724074 AAATATTGGTACTCGACGGTCA 57.276 40.909 9.10 0.00 0.00 4.02
1569 1676 5.349543 ACAAAAATATTGGTACTCGACGGTC 59.650 40.000 0.00 0.00 0.00 4.79
1570 1677 5.121142 CACAAAAATATTGGTACTCGACGGT 59.879 40.000 0.00 0.00 0.00 4.83
1571 1678 5.121142 ACACAAAAATATTGGTACTCGACGG 59.879 40.000 0.00 0.00 0.00 4.79
1572 1679 6.160664 ACACAAAAATATTGGTACTCGACG 57.839 37.500 0.00 0.00 0.00 5.12
1573 1680 6.089820 TCGACACAAAAATATTGGTACTCGAC 59.910 38.462 0.00 0.00 31.07 4.20
1574 1681 6.089820 GTCGACACAAAAATATTGGTACTCGA 59.910 38.462 11.55 1.91 32.47 4.04
1575 1682 6.128769 TGTCGACACAAAAATATTGGTACTCG 60.129 38.462 15.76 0.00 0.00 4.18
1576 1683 7.124347 TGTCGACACAAAAATATTGGTACTC 57.876 36.000 15.76 0.00 0.00 2.59
1577 1684 7.499321 TTGTCGACACAAAAATATTGGTACT 57.501 32.000 19.90 0.00 39.69 2.73
1578 1685 9.828852 TTATTGTCGACACAAAAATATTGGTAC 57.171 29.630 19.90 0.00 45.78 3.34
1583 1690 9.730420 GCCTATTATTGTCGACACAAAAATATT 57.270 29.630 19.90 11.41 45.78 1.28
1584 1691 9.120538 AGCCTATTATTGTCGACACAAAAATAT 57.879 29.630 19.90 9.81 45.78 1.28
1585 1692 8.394877 CAGCCTATTATTGTCGACACAAAAATA 58.605 33.333 19.90 16.61 45.78 1.40
1586 1693 7.094377 ACAGCCTATTATTGTCGACACAAAAAT 60.094 33.333 19.90 16.39 45.78 1.82
1609 1716 1.462283 CGTGAGTGCTGGATTGAACAG 59.538 52.381 0.00 0.00 38.95 3.16
1725 1838 9.227490 CTCATCGAGTAAACAAGTATAGAACAG 57.773 37.037 0.00 0.00 0.00 3.16
1731 1844 6.096423 AGCACCTCATCGAGTAAACAAGTATA 59.904 38.462 0.00 0.00 0.00 1.47
1732 1845 5.105310 AGCACCTCATCGAGTAAACAAGTAT 60.105 40.000 0.00 0.00 0.00 2.12
1765 1878 1.286354 CGAGGCGGCGAACACTAAAA 61.286 55.000 12.98 0.00 0.00 1.52
1773 1886 3.583276 AATGTGTCGAGGCGGCGAA 62.583 57.895 12.98 0.00 42.55 4.70
1774 1887 3.982372 GAATGTGTCGAGGCGGCGA 62.982 63.158 12.98 1.47 38.07 5.54
1775 1888 3.554692 GAATGTGTCGAGGCGGCG 61.555 66.667 0.51 0.51 32.50 6.46
1776 1889 3.195698 GGAATGTGTCGAGGCGGC 61.196 66.667 0.00 0.00 0.00 6.53
1777 1890 2.511600 GGGAATGTGTCGAGGCGG 60.512 66.667 0.00 0.00 0.00 6.13
1778 1891 2.511600 GGGGAATGTGTCGAGGCG 60.512 66.667 0.00 0.00 0.00 5.52
1779 1892 2.511600 CGGGGAATGTGTCGAGGC 60.512 66.667 0.00 0.00 0.00 4.70
1780 1893 2.186903 CCGGGGAATGTGTCGAGG 59.813 66.667 0.00 0.00 0.00 4.63
1781 1894 2.511600 GCCGGGGAATGTGTCGAG 60.512 66.667 2.18 0.00 0.00 4.04
1782 1895 2.587322 GATGCCGGGGAATGTGTCGA 62.587 60.000 2.18 0.00 0.00 4.20
1783 1896 2.124736 ATGCCGGGGAATGTGTCG 60.125 61.111 2.18 0.00 0.00 4.35
1784 1897 2.180204 CGATGCCGGGGAATGTGTC 61.180 63.158 2.18 0.00 0.00 3.67
1785 1898 2.124736 CGATGCCGGGGAATGTGT 60.125 61.111 2.18 0.00 0.00 3.72
1786 1899 2.124736 ACGATGCCGGGGAATGTG 60.125 61.111 2.18 0.00 40.78 3.21
1787 1900 2.189521 GACGATGCCGGGGAATGT 59.810 61.111 2.18 0.00 40.78 2.71
1788 1901 2.591715 GGACGATGCCGGGGAATG 60.592 66.667 2.18 0.00 40.78 2.67
1789 1902 3.873812 GGGACGATGCCGGGGAAT 61.874 66.667 2.18 0.00 40.78 3.01
1792 1905 2.332312 TTATTGGGACGATGCCGGGG 62.332 60.000 2.18 0.00 40.78 5.73
1793 1906 1.147376 TTATTGGGACGATGCCGGG 59.853 57.895 2.18 0.00 40.78 5.73
1794 1907 0.462937 TGTTATTGGGACGATGCCGG 60.463 55.000 0.00 0.00 40.78 6.13
1795 1908 0.937304 CTGTTATTGGGACGATGCCG 59.063 55.000 0.00 0.00 42.50 5.69
1796 1909 0.663153 GCTGTTATTGGGACGATGCC 59.337 55.000 0.00 0.00 0.00 4.40
1797 1910 0.663153 GGCTGTTATTGGGACGATGC 59.337 55.000 0.00 0.00 0.00 3.91
1798 1911 0.937304 CGGCTGTTATTGGGACGATG 59.063 55.000 0.00 0.00 32.69 3.84
1799 1912 0.539986 ACGGCTGTTATTGGGACGAT 59.460 50.000 0.00 0.00 35.27 3.73
1800 1913 1.135024 GTACGGCTGTTATTGGGACGA 60.135 52.381 1.99 0.00 35.27 4.20
1801 1914 1.283736 GTACGGCTGTTATTGGGACG 58.716 55.000 1.99 0.00 37.52 4.79
1802 1915 1.065998 TGGTACGGCTGTTATTGGGAC 60.066 52.381 1.99 0.00 0.00 4.46
1803 1916 1.277579 TGGTACGGCTGTTATTGGGA 58.722 50.000 1.99 0.00 0.00 4.37
1804 1917 2.116827 TTGGTACGGCTGTTATTGGG 57.883 50.000 1.99 0.00 0.00 4.12
1805 1918 3.442273 ACAATTGGTACGGCTGTTATTGG 59.558 43.478 10.83 0.00 0.00 3.16
1806 1919 4.695217 ACAATTGGTACGGCTGTTATTG 57.305 40.909 10.83 11.43 0.00 1.90
1820 1933 4.931002 CAGAAACCAGGCATTTACAATTGG 59.069 41.667 10.83 0.00 0.00 3.16
1833 1946 0.670162 CTGCACAACCAGAAACCAGG 59.330 55.000 0.00 0.00 34.77 4.45
1836 1949 2.685897 TGTAACTGCACAACCAGAAACC 59.314 45.455 0.00 0.00 36.67 3.27
1878 1991 4.031765 CAGACGTATTTCCATGTTCGACAG 59.968 45.833 0.00 0.00 0.00 3.51
1880 1993 3.924686 ACAGACGTATTTCCATGTTCGAC 59.075 43.478 0.00 0.00 0.00 4.20
1885 1998 2.290008 TGCCACAGACGTATTTCCATGT 60.290 45.455 0.00 0.00 0.00 3.21
1896 2009 0.238289 GAAACCACATGCCACAGACG 59.762 55.000 0.00 0.00 0.00 4.18
1900 2013 0.754587 TGCAGAAACCACATGCCACA 60.755 50.000 0.00 0.00 39.22 4.17
1904 2017 2.029649 AGACAATGCAGAAACCACATGC 60.030 45.455 0.00 0.00 40.40 4.06
1911 2024 5.343249 ACAACAAGAAGACAATGCAGAAAC 58.657 37.500 0.00 0.00 0.00 2.78
1915 2028 4.036027 ACAGACAACAAGAAGACAATGCAG 59.964 41.667 0.00 0.00 0.00 4.41
1916 2029 3.947196 ACAGACAACAAGAAGACAATGCA 59.053 39.130 0.00 0.00 0.00 3.96
1938 2051 5.938710 TGAAAACCCGTATTTGCTACATACA 59.061 36.000 0.00 0.00 0.00 2.29
1939 2052 6.425577 TGAAAACCCGTATTTGCTACATAC 57.574 37.500 0.00 0.00 0.00 2.39
1951 2064 8.616942 CACATGATTGTATAATGAAAACCCGTA 58.383 33.333 0.00 0.00 33.76 4.02
1966 2085 4.018870 TGGTCCTAAAGCCACATGATTGTA 60.019 41.667 0.00 0.00 33.76 2.41
1986 2105 5.105513 CCAAACAAGACAAGGTAAAAGTGGT 60.106 40.000 0.00 0.00 0.00 4.16
2014 2134 2.632996 TGGAACTGTCTCAGTGTAAGGG 59.367 50.000 3.12 0.00 44.62 3.95
2019 2139 4.835615 ACTAGAATGGAACTGTCTCAGTGT 59.164 41.667 0.00 0.00 44.62 3.55
2061 2181 7.722949 AAGTTTGATCATGTGATAAATGGGT 57.277 32.000 0.00 0.00 34.37 4.51
2067 2187 9.123902 CCCTTCATAAGTTTGATCATGTGATAA 57.876 33.333 0.00 0.00 34.37 1.75
2085 2205 5.105797 GCAAATGTGAATGTGACCCTTCATA 60.106 40.000 1.80 0.27 34.18 2.15
2103 2223 1.662629 CTCGCCTAGTGACAGCAAATG 59.337 52.381 0.00 0.00 0.00 2.32
2151 2271 7.992033 ACAGAGATTTGATCCTTCATAGAAAGG 59.008 37.037 0.00 0.00 46.11 3.11
2152 2272 8.961294 ACAGAGATTTGATCCTTCATAGAAAG 57.039 34.615 0.00 0.00 0.00 2.62
2153 2273 8.542926 TGACAGAGATTTGATCCTTCATAGAAA 58.457 33.333 0.00 0.00 0.00 2.52
2154 2274 7.984050 GTGACAGAGATTTGATCCTTCATAGAA 59.016 37.037 0.00 0.00 0.00 2.10
2155 2275 7.344093 AGTGACAGAGATTTGATCCTTCATAGA 59.656 37.037 0.00 0.00 0.00 1.98
2156 2276 7.438757 CAGTGACAGAGATTTGATCCTTCATAG 59.561 40.741 0.00 0.00 0.00 2.23
2157 2277 7.093156 ACAGTGACAGAGATTTGATCCTTCATA 60.093 37.037 0.00 0.00 0.00 2.15
2158 2278 6.114089 CAGTGACAGAGATTTGATCCTTCAT 58.886 40.000 0.00 0.00 0.00 2.57
2159 2279 5.012458 ACAGTGACAGAGATTTGATCCTTCA 59.988 40.000 0.00 0.00 0.00 3.02
2160 2280 5.486526 ACAGTGACAGAGATTTGATCCTTC 58.513 41.667 0.00 0.00 0.00 3.46
2161 2281 5.495926 ACAGTGACAGAGATTTGATCCTT 57.504 39.130 0.00 0.00 0.00 3.36
2162 2282 6.805016 ATACAGTGACAGAGATTTGATCCT 57.195 37.500 0.00 0.00 0.00 3.24
2163 2283 9.202273 GAATATACAGTGACAGAGATTTGATCC 57.798 37.037 0.00 0.00 0.00 3.36
2164 2284 9.202273 GGAATATACAGTGACAGAGATTTGATC 57.798 37.037 0.00 0.00 0.00 2.92
2165 2285 8.932610 AGGAATATACAGTGACAGAGATTTGAT 58.067 33.333 0.00 0.00 0.00 2.57
2166 2286 8.311395 AGGAATATACAGTGACAGAGATTTGA 57.689 34.615 0.00 0.00 0.00 2.69
2167 2287 8.954950 AAGGAATATACAGTGACAGAGATTTG 57.045 34.615 0.00 0.00 0.00 2.32
2168 2288 7.923344 CGAAGGAATATACAGTGACAGAGATTT 59.077 37.037 0.00 0.00 0.00 2.17
2169 2289 7.068839 ACGAAGGAATATACAGTGACAGAGATT 59.931 37.037 0.00 0.00 0.00 2.40
2170 2290 6.547880 ACGAAGGAATATACAGTGACAGAGAT 59.452 38.462 0.00 0.00 0.00 2.75
2171 2291 5.886474 ACGAAGGAATATACAGTGACAGAGA 59.114 40.000 0.00 0.00 0.00 3.10
2172 2292 6.137794 ACGAAGGAATATACAGTGACAGAG 57.862 41.667 0.00 0.00 0.00 3.35
2173 2293 6.377429 AGAACGAAGGAATATACAGTGACAGA 59.623 38.462 0.00 0.00 0.00 3.41
2174 2294 6.473778 CAGAACGAAGGAATATACAGTGACAG 59.526 42.308 0.00 0.00 0.00 3.51
2175 2295 6.071560 ACAGAACGAAGGAATATACAGTGACA 60.072 38.462 0.00 0.00 0.00 3.58
2176 2296 6.331061 ACAGAACGAAGGAATATACAGTGAC 58.669 40.000 0.00 0.00 0.00 3.67
2177 2297 6.405508 GGACAGAACGAAGGAATATACAGTGA 60.406 42.308 0.00 0.00 0.00 3.41
2178 2298 5.749109 GGACAGAACGAAGGAATATACAGTG 59.251 44.000 0.00 0.00 0.00 3.66
2179 2299 5.657302 AGGACAGAACGAAGGAATATACAGT 59.343 40.000 0.00 0.00 0.00 3.55
2180 2300 6.150396 AGGACAGAACGAAGGAATATACAG 57.850 41.667 0.00 0.00 0.00 2.74
2181 2301 6.540438 AAGGACAGAACGAAGGAATATACA 57.460 37.500 0.00 0.00 0.00 2.29
2182 2302 6.817140 ACAAAGGACAGAACGAAGGAATATAC 59.183 38.462 0.00 0.00 0.00 1.47
2183 2303 6.942976 ACAAAGGACAGAACGAAGGAATATA 58.057 36.000 0.00 0.00 0.00 0.86
2184 2304 5.805728 ACAAAGGACAGAACGAAGGAATAT 58.194 37.500 0.00 0.00 0.00 1.28
2185 2305 5.223449 ACAAAGGACAGAACGAAGGAATA 57.777 39.130 0.00 0.00 0.00 1.75
2186 2306 4.086706 ACAAAGGACAGAACGAAGGAAT 57.913 40.909 0.00 0.00 0.00 3.01
2187 2307 3.553828 ACAAAGGACAGAACGAAGGAA 57.446 42.857 0.00 0.00 0.00 3.36
2188 2308 4.527038 AGATACAAAGGACAGAACGAAGGA 59.473 41.667 0.00 0.00 0.00 3.36
2189 2309 4.822026 AGATACAAAGGACAGAACGAAGG 58.178 43.478 0.00 0.00 0.00 3.46
2190 2310 6.622549 AGTAGATACAAAGGACAGAACGAAG 58.377 40.000 0.00 0.00 0.00 3.79
2191 2311 6.585695 AGTAGATACAAAGGACAGAACGAA 57.414 37.500 0.00 0.00 0.00 3.85
2192 2312 6.433404 AGAAGTAGATACAAAGGACAGAACGA 59.567 38.462 0.00 0.00 0.00 3.85
2193 2313 6.622549 AGAAGTAGATACAAAGGACAGAACG 58.377 40.000 0.00 0.00 0.00 3.95
2194 2314 8.521176 TGTAGAAGTAGATACAAAGGACAGAAC 58.479 37.037 0.00 0.00 0.00 3.01
2295 2415 8.897752 GGTCAGATCTATTTATTTTTCAGCTGT 58.102 33.333 14.67 0.00 0.00 4.40
2299 2419 9.674824 GCATGGTCAGATCTATTTATTTTTCAG 57.325 33.333 0.00 0.00 0.00 3.02
2315 2436 5.769662 ACAACTTGAATTTAGCATGGTCAGA 59.230 36.000 0.00 0.00 0.00 3.27
2328 2449 3.068024 ACGGATGCAACACAACTTGAATT 59.932 39.130 0.00 0.00 0.00 2.17
2330 2451 2.020720 ACGGATGCAACACAACTTGAA 58.979 42.857 0.00 0.00 0.00 2.69
2369 2490 8.540388 TGCTAACCATGAGACTTAAATAAGACT 58.460 33.333 7.17 6.09 40.13 3.24
2386 2511 5.163301 CCAGATAAGGTAGTGTGCTAACCAT 60.163 44.000 0.00 0.00 35.54 3.55
2401 2526 4.713792 ACCTAAATCCAGCCAGATAAGG 57.286 45.455 10.89 10.89 36.38 2.69
2405 2530 3.392616 CCTGTACCTAAATCCAGCCAGAT 59.607 47.826 0.00 0.00 0.00 2.90
2465 2590 9.757227 AATGTTTGTTAGTGCTAAGCAAATAAA 57.243 25.926 15.51 0.00 41.47 1.40
2497 2633 3.286329 TCATAATCAGCTGCACCACAT 57.714 42.857 9.47 0.00 0.00 3.21
2499 2635 3.474600 AGATCATAATCAGCTGCACCAC 58.525 45.455 9.47 0.00 34.07 4.16
2530 2666 0.322816 CAGCACCTGGCCACACTAAT 60.323 55.000 0.00 0.00 46.50 1.73
2536 2672 2.113986 AGAACAGCACCTGGCCAC 59.886 61.111 0.00 0.00 46.50 5.01
2603 2739 6.393990 CGATCCCAGATCCTAACTCAATTAG 58.606 44.000 0.00 0.00 40.19 1.73
2614 2750 0.558220 TCTCACCGATCCCAGATCCT 59.442 55.000 0.00 0.00 0.00 3.24
2646 2790 8.849168 TGTAAGATCACAATTTGAAGTGAATGT 58.151 29.630 2.79 0.00 46.62 2.71
2677 2829 2.710377 AGCAAGTCACAACAGTGTCAA 58.290 42.857 0.00 0.00 35.07 3.18
2869 3021 8.341903 TCCAATTCATATACACAAATTGCTACG 58.658 33.333 0.00 0.00 37.64 3.51
2886 3038 8.481492 TGTTGATGCCTATAAATCCAATTCAT 57.519 30.769 0.00 0.00 0.00 2.57
2895 3052 9.807649 GACTGAAAAATGTTGATGCCTATAAAT 57.192 29.630 0.00 0.00 0.00 1.40
2903 3060 7.086376 ACACATAGACTGAAAAATGTTGATGC 58.914 34.615 0.00 0.00 30.32 3.91
2927 3084 4.067896 ACACTGGATGATTGTTGACTGAC 58.932 43.478 0.00 0.00 0.00 3.51
2992 3149 4.696899 ATGGCTGCATCATTAATGATCG 57.303 40.909 24.94 20.26 45.23 3.69
3010 3167 8.832521 ACTGAAAATATAAATGCAATGCAATGG 58.167 29.630 13.45 0.00 43.62 3.16
3018 3175 7.415095 CCGGACAGACTGAAAATATAAATGCAA 60.415 37.037 10.08 0.00 0.00 4.08
3019 3176 6.038161 CCGGACAGACTGAAAATATAAATGCA 59.962 38.462 10.08 0.00 0.00 3.96
3025 3182 4.746535 TGCCGGACAGACTGAAAATATA 57.253 40.909 5.05 0.00 0.00 0.86
3027 3184 3.071479 GTTGCCGGACAGACTGAAAATA 58.929 45.455 5.05 0.00 0.00 1.40
3055 3212 8.562892 GCATTTGAAGATATAGCAGTACATTGT 58.437 33.333 0.00 0.00 0.00 2.71
3124 3282 1.270412 CCAAGTGTGGCATGTGCAAAT 60.270 47.619 7.36 0.00 44.36 2.32
4034 4204 6.381707 ACTTCTTAGGACCTTCTAATCTGACC 59.618 42.308 0.00 0.00 0.00 4.02
4222 4408 3.374745 CAACATGACACTTTGCTTGTCC 58.625 45.455 0.00 0.00 42.40 4.02
4273 4459 1.269958 AGCAGGTGCAGTGTATCTCA 58.730 50.000 4.48 0.00 45.16 3.27
4354 4540 1.900545 AAACTACTCCGAGCCAGCCC 61.901 60.000 0.00 0.00 0.00 5.19
4574 4760 5.845391 AGCTCTAAGATCTCACTTGTACC 57.155 43.478 0.00 0.00 0.00 3.34
4575 4761 6.512091 CGGTAGCTCTAAGATCTCACTTGTAC 60.512 46.154 0.00 0.00 0.00 2.90
4596 4782 3.514706 TGGCCTATTAAAGTGTCACGGTA 59.485 43.478 3.32 0.00 0.00 4.02
4614 4800 2.113860 TGAAGCAGACATAAGTGGCC 57.886 50.000 0.00 0.00 31.93 5.36
4641 4827 8.375506 AGTTAGTTGGAGAACATAATGAGACAA 58.624 33.333 0.00 0.00 34.17 3.18
4678 4864 7.724061 ACTGGAATTGGCGTAAAATAATAGGAT 59.276 33.333 0.00 0.00 0.00 3.24
4769 4955 1.691434 TGCGTCCATGCTGGTCATATA 59.309 47.619 2.68 0.00 39.03 0.86
4786 4972 1.714794 CTTCCTTCAGTACCAGTGCG 58.285 55.000 0.00 0.00 0.00 5.34
4823 5009 0.388649 CCGTCCACTTCCTCGACAAG 60.389 60.000 0.00 0.00 0.00 3.16
4963 5149 1.856629 ACATTGGCTTTCCTGATGGG 58.143 50.000 0.00 0.00 33.67 4.00
4964 5150 3.131046 GGTAACATTGGCTTTCCTGATGG 59.869 47.826 0.00 0.00 33.67 3.51
4965 5151 3.181497 CGGTAACATTGGCTTTCCTGATG 60.181 47.826 0.00 0.00 34.75 3.07
4991 5177 0.179054 GCCAGCTCAGCAGATCATGA 60.179 55.000 0.00 0.00 0.00 3.07
5036 5222 3.285838 CATGGAGTGGAGAGATGCG 57.714 57.895 0.00 0.00 0.00 4.73
5067 5253 0.466007 ACTGATGCTGGTGTTGTGCA 60.466 50.000 0.00 0.00 41.13 4.57
5069 5255 0.877071 GGACTGATGCTGGTGTTGTG 59.123 55.000 0.00 0.00 0.00 3.33
5141 5331 3.713826 TCTTGATTTAGCGAAAGGGGT 57.286 42.857 0.00 0.00 0.00 4.95
5173 5363 2.916423 CGATGCGATGCTCGTGAC 59.084 61.111 7.27 0.00 42.81 3.67
5174 5364 2.956439 GCGATGCGATGCTCGTGA 60.956 61.111 7.27 0.00 42.81 4.35
5175 5365 3.993234 GGCGATGCGATGCTCGTG 61.993 66.667 7.27 0.00 42.81 4.35
5178 5368 3.696426 GACGGCGATGCGATGCTC 61.696 66.667 16.62 0.00 0.00 4.26
5179 5369 4.512961 TGACGGCGATGCGATGCT 62.513 61.111 16.62 0.00 0.00 3.79
5185 5379 2.187599 AAAAGCTGTGACGGCGATGC 62.188 55.000 16.62 9.96 41.21 3.91
5212 5406 5.067413 TCTCATTGGTACTTCATAGACGGTC 59.933 44.000 0.00 0.00 0.00 4.79
5222 5416 4.446371 CCTGGTCATCTCATTGGTACTTC 58.554 47.826 0.00 0.00 0.00 3.01
5255 5449 2.224378 TGAATCATCTCGATCAAGGGCC 60.224 50.000 0.00 0.00 31.11 5.80
5257 5451 4.056740 CACTGAATCATCTCGATCAAGGG 58.943 47.826 0.00 0.00 31.11 3.95
5270 5464 2.235650 CAGCTCCTCCTTCACTGAATCA 59.764 50.000 0.00 0.00 0.00 2.57
5277 5471 1.078567 CTGGCAGCTCCTCCTTCAC 60.079 63.158 0.00 0.00 35.26 3.18
5279 5473 0.107752 CTTCTGGCAGCTCCTCCTTC 60.108 60.000 10.34 0.00 35.26 3.46
5313 5507 3.244249 GCACCTCTCAAGTAGTCAGGTTT 60.244 47.826 0.00 0.00 35.13 3.27
5317 5511 3.583806 CAAGCACCTCTCAAGTAGTCAG 58.416 50.000 0.00 0.00 0.00 3.51
5400 5598 0.820871 TTCAGTGTGGGTTTTGGTGC 59.179 50.000 0.00 0.00 0.00 5.01
5445 5644 2.420568 CGCAGGGCAATGCAGGAAT 61.421 57.895 7.79 0.00 46.87 3.01
5446 5645 3.063704 CGCAGGGCAATGCAGGAA 61.064 61.111 7.79 0.00 46.87 3.36
5447 5646 4.032452 TCGCAGGGCAATGCAGGA 62.032 61.111 7.79 1.95 46.87 3.86
5463 5662 1.675641 AACTTGGCATGGGAGCGTC 60.676 57.895 5.31 0.00 34.64 5.19
5465 5664 2.879907 CAACTTGGCATGGGAGCG 59.120 61.111 5.31 0.00 34.64 5.03
5498 5697 2.364002 ACAACCAAGAATTTTGGACCCG 59.636 45.455 19.74 10.70 42.06 5.28
5501 5700 7.042725 GCTAAAGAACAACCAAGAATTTTGGAC 60.043 37.037 19.74 9.61 42.06 4.02
5603 5803 1.227853 GTTTGCCTCCGTGACAGGT 60.228 57.895 0.00 0.00 32.98 4.00
5645 5850 0.898320 TCCGAGCCAGAAGAAGGAAG 59.102 55.000 0.00 0.00 0.00 3.46
5648 5853 1.208052 TGATTCCGAGCCAGAAGAAGG 59.792 52.381 0.00 0.00 0.00 3.46
5673 5999 0.464373 TGGCGATGGCTCCAAATCTC 60.464 55.000 0.00 0.00 39.81 2.75
5713 6039 2.821546 CACAGTTTCGTGACCTCTTCA 58.178 47.619 0.00 0.00 39.34 3.02
5715 6041 1.583054 GCACAGTTTCGTGACCTCTT 58.417 50.000 0.00 0.00 39.34 2.85
5716 6042 0.249911 GGCACAGTTTCGTGACCTCT 60.250 55.000 0.00 0.00 39.14 3.69
5786 6112 1.943340 GGTTCATTCAGGCTTCGGATC 59.057 52.381 0.00 0.00 0.00 3.36
5794 6120 1.648467 GCAGACCGGTTCATTCAGGC 61.648 60.000 9.42 0.00 0.00 4.85
5862 6200 0.911856 CACTATTCGTGTACGTGCCG 59.088 55.000 0.00 3.00 38.84 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.