Multiple sequence alignment - TraesCS2A01G145900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G145900 chr2A 100.000 3105 0 0 1 3105 90687898 90691002 0.000000e+00 5734.0
1 TraesCS2A01G145900 chr2A 87.661 389 33 4 126 499 734358854 734358466 3.680000e-119 438.0
2 TraesCS2A01G145900 chr2A 86.616 396 37 4 126 505 550708280 550708675 1.030000e-114 424.0
3 TraesCS2A01G145900 chr2A 84.211 380 51 7 126 499 580425447 580425823 8.190000e-96 361.0
4 TraesCS2A01G145900 chr2A 93.182 132 8 1 1 131 766828348 766828479 3.160000e-45 193.0
5 TraesCS2A01G145900 chr2D 91.503 2036 104 35 553 2543 93046236 93048247 0.000000e+00 2737.0
6 TraesCS2A01G145900 chr2D 84.530 181 18 1 2922 3102 93048508 93048678 1.480000e-38 171.0
7 TraesCS2A01G145900 chr2D 88.288 111 13 0 396 506 557796605 557796495 1.940000e-27 134.0
8 TraesCS2A01G145900 chr2B 89.504 2239 128 43 592 2783 144595857 144598035 0.000000e+00 2734.0
9 TraesCS2A01G145900 chr2B 92.308 182 13 1 2922 3102 144598029 144598210 1.100000e-64 257.0
10 TraesCS2A01G145900 chr2B 91.729 133 11 0 2789 2921 512859467 512859335 5.290000e-43 185.0
11 TraesCS2A01G145900 chr6B 92.939 524 29 5 930 1447 716375647 716376168 0.000000e+00 756.0
12 TraesCS2A01G145900 chr6B 91.729 133 11 0 2789 2921 501154849 501154717 5.290000e-43 185.0
13 TraesCS2A01G145900 chr6B 91.176 136 12 0 2786 2921 514882190 514882325 5.290000e-43 185.0
14 TraesCS2A01G145900 chr6B 90.977 133 12 0 2789 2921 315568159 315568027 2.460000e-41 180.0
15 TraesCS2A01G145900 chr1A 85.934 391 40 2 126 501 427955237 427954847 1.340000e-108 403.0
16 TraesCS2A01G145900 chr1A 93.130 131 8 1 1 130 57395982 57396112 1.140000e-44 191.0
17 TraesCS2A01G145900 chr1A 93.130 131 8 1 1 130 427955401 427955271 1.140000e-44 191.0
18 TraesCS2A01G145900 chr5A 85.640 383 41 7 131 499 510251890 510251508 1.040000e-104 390.0
19 TraesCS2A01G145900 chr5A 85.347 389 42 5 126 499 597245536 597245924 3.750000e-104 388.0
20 TraesCS2A01G145900 chr5A 84.794 388 42 5 131 502 669569296 669569682 1.050000e-99 374.0
21 TraesCS2A01G145900 chr5A 93.893 131 7 1 1 130 441506456 441506586 2.440000e-46 196.0
22 TraesCS2A01G145900 chr5A 93.893 131 7 1 1 130 510252059 510251929 2.440000e-46 196.0
23 TraesCS2A01G145900 chr5A 93.893 131 7 1 1 130 645981889 645981759 2.440000e-46 196.0
24 TraesCS2A01G145900 chr3A 84.576 389 45 1 126 499 674128059 674127671 3.780000e-99 372.0
25 TraesCS2A01G145900 chr3A 89.377 273 26 3 126 396 656948686 656948415 1.070000e-89 340.0
26 TraesCS2A01G145900 chr3A 94.656 131 6 1 1 130 13961947 13962077 5.250000e-48 202.0
27 TraesCS2A01G145900 chr4B 79.948 384 57 12 126 499 591280828 591281201 6.600000e-67 265.0
28 TraesCS2A01G145900 chr4B 88.776 98 10 1 2429 2525 40003814 40003717 5.440000e-23 119.0
29 TraesCS2A01G145900 chr4B 92.727 55 4 0 2353 2407 40003870 40003816 2.570000e-11 80.5
30 TraesCS2A01G145900 chr1B 79.805 411 45 18 126 502 644424 644018 6.600000e-67 265.0
31 TraesCS2A01G145900 chr1B 92.481 133 10 0 2789 2921 42505353 42505221 1.140000e-44 191.0
32 TraesCS2A01G145900 chr1B 90.977 133 12 0 2789 2921 592713234 592713102 2.460000e-41 180.0
33 TraesCS2A01G145900 chr7A 93.893 131 7 1 1 130 628836540 628836670 2.440000e-46 196.0
34 TraesCS2A01G145900 chr4A 93.893 131 7 1 1 130 466943781 466943911 2.440000e-46 196.0
35 TraesCS2A01G145900 chr3B 91.729 133 10 1 2789 2921 292149109 292148978 1.900000e-42 183.0
36 TraesCS2A01G145900 chr3B 90.580 138 11 2 2784 2921 276765098 276764963 6.840000e-42 182.0
37 TraesCS2A01G145900 chr7B 90.977 133 12 0 2789 2921 59273713 59273581 2.460000e-41 180.0
38 TraesCS2A01G145900 chr1D 82.063 223 22 8 301 506 387055962 387055741 1.140000e-39 174.0
39 TraesCS2A01G145900 chr1D 81.773 203 28 4 316 509 19035329 19035127 8.910000e-36 161.0
40 TraesCS2A01G145900 chr1D 88.785 107 10 2 396 501 78117879 78117774 2.510000e-26 130.0
41 TraesCS2A01G145900 chr6A 89.815 108 9 2 396 502 147972677 147972571 1.500000e-28 137.0
42 TraesCS2A01G145900 chr5D 80.198 202 20 9 316 499 331545798 331545599 1.940000e-27 134.0
43 TraesCS2A01G145900 chr6D 88.785 107 10 2 396 501 428663336 428663441 2.510000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G145900 chr2A 90687898 90691002 3104 False 5734.0 5734 100.0000 1 3105 1 chr2A.!!$F1 3104
1 TraesCS2A01G145900 chr2D 93046236 93048678 2442 False 1454.0 2737 88.0165 553 3102 2 chr2D.!!$F1 2549
2 TraesCS2A01G145900 chr2B 144595857 144598210 2353 False 1495.5 2734 90.9060 592 3102 2 chr2B.!!$F1 2510
3 TraesCS2A01G145900 chr6B 716375647 716376168 521 False 756.0 756 92.9390 930 1447 1 chr6B.!!$F2 517
4 TraesCS2A01G145900 chr1A 427954847 427955401 554 True 297.0 403 89.5320 1 501 2 chr1A.!!$R1 500
5 TraesCS2A01G145900 chr5A 510251508 510252059 551 True 293.0 390 89.7665 1 499 2 chr5A.!!$R2 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 958 0.170116 GTGCTCGTCTCTGACCTCTG 59.83 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2791 2934 0.033503 TAGCCACGTCAGAGGATCCA 60.034 55.0 15.82 0.0 33.66 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.480416 GGACTTGTCGAAGATGAGCGAT 60.480 50.000 0.00 0.00 40.67 4.58
83 84 2.224066 CGATAAGACGAGGGCCTGATTT 60.224 50.000 12.95 2.31 35.09 2.17
96 97 2.097825 CCTGATTTGAGGCCAAGAAGG 58.902 52.381 5.01 0.00 41.84 3.46
114 115 1.680522 GGAGGAGATGCTCGAAGCCA 61.681 60.000 4.73 0.00 41.51 4.75
129 169 1.531602 GCCAAAGGCCTGAACTGGT 60.532 57.895 5.69 0.00 44.06 4.00
137 177 0.328258 GCCTGAACTGGTATGGGTGT 59.672 55.000 0.00 0.00 0.00 4.16
167 207 4.626081 GGACCGCTGGCTGTGTGT 62.626 66.667 4.22 2.04 0.00 3.72
243 283 0.743345 GCCGGCGAGGACAACTATTT 60.743 55.000 12.58 0.00 45.00 1.40
244 284 1.734163 CCGGCGAGGACAACTATTTT 58.266 50.000 9.30 0.00 45.00 1.82
267 307 2.358003 GAGGCTCGCTGTGTTGCT 60.358 61.111 0.00 0.00 0.00 3.91
308 348 4.814294 GGACGTGTAGGCCGCTGG 62.814 72.222 0.00 0.00 38.99 4.85
318 358 2.030262 GCCGCTGGCCTGATCTAG 59.970 66.667 14.77 0.00 44.06 2.43
330 370 4.363991 CCTGATCTAGGGCTTAGCATTT 57.636 45.455 6.53 0.00 43.33 2.32
331 371 4.070716 CCTGATCTAGGGCTTAGCATTTG 58.929 47.826 6.53 0.00 43.33 2.32
332 372 4.202398 CCTGATCTAGGGCTTAGCATTTGA 60.202 45.833 6.53 0.24 43.33 2.69
333 373 5.371526 CTGATCTAGGGCTTAGCATTTGAA 58.628 41.667 6.53 0.00 0.00 2.69
334 374 5.754782 TGATCTAGGGCTTAGCATTTGAAA 58.245 37.500 6.53 0.00 0.00 2.69
335 375 5.590259 TGATCTAGGGCTTAGCATTTGAAAC 59.410 40.000 6.53 0.82 0.00 2.78
336 376 3.938963 TCTAGGGCTTAGCATTTGAAACG 59.061 43.478 6.53 0.00 0.00 3.60
337 377 2.514803 AGGGCTTAGCATTTGAAACGT 58.485 42.857 6.53 0.00 0.00 3.99
338 378 2.890945 AGGGCTTAGCATTTGAAACGTT 59.109 40.909 6.53 0.00 0.00 3.99
339 379 3.320826 AGGGCTTAGCATTTGAAACGTTT 59.679 39.130 14.57 14.57 0.00 3.60
340 380 4.055360 GGGCTTAGCATTTGAAACGTTTT 58.945 39.130 15.89 0.00 0.00 2.43
341 381 4.509970 GGGCTTAGCATTTGAAACGTTTTT 59.490 37.500 15.89 0.00 0.00 1.94
375 415 8.589335 TTAAATAGACACGAATAGAATGAGGC 57.411 34.615 0.00 0.00 0.00 4.70
376 416 5.791336 ATAGACACGAATAGAATGAGGCA 57.209 39.130 0.00 0.00 0.00 4.75
377 417 4.471904 AGACACGAATAGAATGAGGCAA 57.528 40.909 0.00 0.00 0.00 4.52
378 418 4.832248 AGACACGAATAGAATGAGGCAAA 58.168 39.130 0.00 0.00 0.00 3.68
379 419 5.431765 AGACACGAATAGAATGAGGCAAAT 58.568 37.500 0.00 0.00 0.00 2.32
380 420 5.295292 AGACACGAATAGAATGAGGCAAATG 59.705 40.000 0.00 0.00 0.00 2.32
381 421 5.185454 ACACGAATAGAATGAGGCAAATGA 58.815 37.500 0.00 0.00 0.00 2.57
382 422 5.647658 ACACGAATAGAATGAGGCAAATGAA 59.352 36.000 0.00 0.00 0.00 2.57
383 423 6.319658 ACACGAATAGAATGAGGCAAATGAAT 59.680 34.615 0.00 0.00 0.00 2.57
384 424 6.635641 CACGAATAGAATGAGGCAAATGAATG 59.364 38.462 0.00 0.00 0.00 2.67
385 425 6.543465 ACGAATAGAATGAGGCAAATGAATGA 59.457 34.615 0.00 0.00 0.00 2.57
386 426 7.076362 CGAATAGAATGAGGCAAATGAATGAG 58.924 38.462 0.00 0.00 0.00 2.90
387 427 6.896021 ATAGAATGAGGCAAATGAATGAGG 57.104 37.500 0.00 0.00 0.00 3.86
388 428 3.383825 AGAATGAGGCAAATGAATGAGGC 59.616 43.478 0.00 0.00 0.00 4.70
389 429 1.477553 TGAGGCAAATGAATGAGGCC 58.522 50.000 0.00 0.00 44.92 5.19
391 431 1.227060 GGCAAATGAATGAGGCCGC 60.227 57.895 0.00 0.00 34.56 6.53
392 432 1.512230 GCAAATGAATGAGGCCGCA 59.488 52.632 12.99 12.99 0.00 5.69
393 433 0.803380 GCAAATGAATGAGGCCGCAC 60.803 55.000 12.85 0.00 0.00 5.34
394 434 0.523968 CAAATGAATGAGGCCGCACG 60.524 55.000 12.85 0.00 0.00 5.34
395 435 2.270297 AAATGAATGAGGCCGCACGC 62.270 55.000 12.85 7.44 0.00 5.34
415 455 4.838152 CATCCCAGGACACGCCCG 62.838 72.222 0.00 0.00 37.37 6.13
419 459 4.308458 CCAGGACACGCCCGAACA 62.308 66.667 0.00 0.00 37.37 3.18
420 460 3.041940 CAGGACACGCCCGAACAC 61.042 66.667 0.00 0.00 37.37 3.32
421 461 4.657824 AGGACACGCCCGAACACG 62.658 66.667 0.00 0.00 37.37 4.49
422 462 4.651008 GGACACGCCCGAACACGA 62.651 66.667 0.00 0.00 0.00 4.35
423 463 2.431942 GACACGCCCGAACACGAT 60.432 61.111 0.00 0.00 0.00 3.73
424 464 2.025418 GACACGCCCGAACACGATT 61.025 57.895 0.00 0.00 0.00 3.34
425 465 0.733566 GACACGCCCGAACACGATTA 60.734 55.000 0.00 0.00 0.00 1.75
426 466 1.010419 ACACGCCCGAACACGATTAC 61.010 55.000 0.00 0.00 0.00 1.89
427 467 1.009903 CACGCCCGAACACGATTACA 61.010 55.000 0.00 0.00 0.00 2.41
428 468 0.319727 ACGCCCGAACACGATTACAA 60.320 50.000 0.00 0.00 0.00 2.41
429 469 0.791422 CGCCCGAACACGATTACAAA 59.209 50.000 0.00 0.00 0.00 2.83
430 470 1.395608 CGCCCGAACACGATTACAAAT 59.604 47.619 0.00 0.00 0.00 2.32
431 471 2.536130 CGCCCGAACACGATTACAAATC 60.536 50.000 0.00 0.00 0.00 2.17
432 472 2.223180 GCCCGAACACGATTACAAATCC 60.223 50.000 0.00 0.00 0.00 3.01
433 473 2.353579 CCCGAACACGATTACAAATCCC 59.646 50.000 0.00 0.00 0.00 3.85
434 474 3.004171 CCGAACACGATTACAAATCCCA 58.996 45.455 0.00 0.00 0.00 4.37
435 475 3.181514 CCGAACACGATTACAAATCCCAC 60.182 47.826 0.00 0.00 0.00 4.61
436 476 3.682858 CGAACACGATTACAAATCCCACT 59.317 43.478 0.00 0.00 0.00 4.00
437 477 4.153475 CGAACACGATTACAAATCCCACTT 59.847 41.667 0.00 0.00 0.00 3.16
438 478 5.622770 AACACGATTACAAATCCCACTTC 57.377 39.130 0.00 0.00 0.00 3.01
439 479 4.647611 ACACGATTACAAATCCCACTTCA 58.352 39.130 0.00 0.00 0.00 3.02
440 480 5.067273 ACACGATTACAAATCCCACTTCAA 58.933 37.500 0.00 0.00 0.00 2.69
441 481 5.533154 ACACGATTACAAATCCCACTTCAAA 59.467 36.000 0.00 0.00 0.00 2.69
442 482 5.856455 CACGATTACAAATCCCACTTCAAAC 59.144 40.000 0.00 0.00 0.00 2.93
443 483 5.086058 CGATTACAAATCCCACTTCAAACG 58.914 41.667 0.00 0.00 0.00 3.60
444 484 5.106869 CGATTACAAATCCCACTTCAAACGA 60.107 40.000 0.00 0.00 0.00 3.85
445 485 6.566942 CGATTACAAATCCCACTTCAAACGAA 60.567 38.462 0.00 0.00 0.00 3.85
446 486 4.301637 ACAAATCCCACTTCAAACGAAC 57.698 40.909 0.00 0.00 0.00 3.95
447 487 3.242936 ACAAATCCCACTTCAAACGAACG 60.243 43.478 0.00 0.00 0.00 3.95
448 488 2.536761 ATCCCACTTCAAACGAACGA 57.463 45.000 0.14 0.00 0.00 3.85
449 489 2.312722 TCCCACTTCAAACGAACGAA 57.687 45.000 0.14 0.00 0.00 3.85
450 490 2.630158 TCCCACTTCAAACGAACGAAA 58.370 42.857 0.14 0.00 0.00 3.46
451 491 3.207778 TCCCACTTCAAACGAACGAAAT 58.792 40.909 0.14 0.00 0.00 2.17
452 492 3.249080 TCCCACTTCAAACGAACGAAATC 59.751 43.478 0.14 0.00 0.00 2.17
453 493 3.551551 CCACTTCAAACGAACGAAATCC 58.448 45.455 0.14 0.00 0.00 3.01
454 494 3.215244 CACTTCAAACGAACGAAATCCG 58.785 45.455 0.14 0.00 45.44 4.18
455 495 2.222445 ACTTCAAACGAACGAAATCCGG 59.778 45.455 0.00 0.00 43.93 5.14
456 496 2.151881 TCAAACGAACGAAATCCGGA 57.848 45.000 6.61 6.61 43.93 5.14
457 497 1.794116 TCAAACGAACGAAATCCGGAC 59.206 47.619 6.12 0.00 43.93 4.79
458 498 1.527736 CAAACGAACGAAATCCGGACA 59.472 47.619 6.12 0.00 43.93 4.02
459 499 1.868469 AACGAACGAAATCCGGACAA 58.132 45.000 6.12 0.00 43.93 3.18
460 500 1.868469 ACGAACGAAATCCGGACAAA 58.132 45.000 6.12 0.00 43.93 2.83
461 501 2.211806 ACGAACGAAATCCGGACAAAA 58.788 42.857 6.12 0.00 43.93 2.44
462 502 2.032636 ACGAACGAAATCCGGACAAAAC 60.033 45.455 6.12 0.00 43.93 2.43
463 503 2.567067 GAACGAAATCCGGACAAAACG 58.433 47.619 6.12 11.42 43.93 3.60
470 510 3.237290 CGGACAAAACGGACGTCC 58.763 61.111 25.28 25.28 44.79 4.79
480 520 2.357881 GGACGTCCGTTTGGGGTC 60.358 66.667 20.85 0.00 37.97 4.46
481 521 2.735857 GACGTCCGTTTGGGGTCG 60.736 66.667 3.51 0.00 38.68 4.79
482 522 3.504524 GACGTCCGTTTGGGGTCGT 62.505 63.158 3.51 3.71 44.56 4.34
483 523 2.141122 GACGTCCGTTTGGGGTCGTA 62.141 60.000 3.51 0.00 43.00 3.43
484 524 1.734117 CGTCCGTTTGGGGTCGTAC 60.734 63.158 0.00 0.00 36.01 3.67
485 525 1.734117 GTCCGTTTGGGGTCGTACG 60.734 63.158 9.53 9.53 36.01 3.67
486 526 2.432972 CCGTTTGGGGTCGTACGG 60.433 66.667 16.52 0.00 46.22 4.02
487 527 2.339712 CGTTTGGGGTCGTACGGT 59.660 61.111 16.52 0.00 0.00 4.83
488 528 2.023223 CGTTTGGGGTCGTACGGTG 61.023 63.158 16.52 0.00 0.00 4.94
489 529 1.668793 GTTTGGGGTCGTACGGTGG 60.669 63.158 16.52 0.00 0.00 4.61
490 530 1.836158 TTTGGGGTCGTACGGTGGA 60.836 57.895 16.52 0.00 0.00 4.02
491 531 1.818959 TTTGGGGTCGTACGGTGGAG 61.819 60.000 16.52 0.00 0.00 3.86
492 532 2.677875 GGGGTCGTACGGTGGAGT 60.678 66.667 16.52 0.00 0.00 3.85
493 533 2.278330 GGGGTCGTACGGTGGAGTT 61.278 63.158 16.52 0.00 0.00 3.01
494 534 1.080298 GGGTCGTACGGTGGAGTTG 60.080 63.158 16.52 0.00 0.00 3.16
495 535 1.080298 GGTCGTACGGTGGAGTTGG 60.080 63.158 16.52 0.00 0.00 3.77
496 536 1.735559 GTCGTACGGTGGAGTTGGC 60.736 63.158 16.52 0.00 0.00 4.52
497 537 2.433664 CGTACGGTGGAGTTGGCC 60.434 66.667 7.57 0.00 0.00 5.36
498 538 2.939261 CGTACGGTGGAGTTGGCCT 61.939 63.158 7.57 0.00 0.00 5.19
499 539 1.373812 GTACGGTGGAGTTGGCCTT 59.626 57.895 3.32 0.00 0.00 4.35
500 540 0.609662 GTACGGTGGAGTTGGCCTTA 59.390 55.000 3.32 0.00 0.00 2.69
501 541 0.899720 TACGGTGGAGTTGGCCTTAG 59.100 55.000 3.32 0.00 0.00 2.18
502 542 1.125711 ACGGTGGAGTTGGCCTTAGT 61.126 55.000 3.32 0.00 0.00 2.24
503 543 0.899720 CGGTGGAGTTGGCCTTAGTA 59.100 55.000 3.32 0.00 0.00 1.82
504 544 1.405121 CGGTGGAGTTGGCCTTAGTAC 60.405 57.143 3.32 0.00 0.00 2.73
505 545 1.626825 GGTGGAGTTGGCCTTAGTACA 59.373 52.381 3.32 0.00 0.00 2.90
506 546 2.614734 GGTGGAGTTGGCCTTAGTACAC 60.615 54.545 16.21 16.21 0.00 2.90
507 547 1.626825 TGGAGTTGGCCTTAGTACACC 59.373 52.381 3.32 3.41 0.00 4.16
508 548 1.626825 GGAGTTGGCCTTAGTACACCA 59.373 52.381 3.32 0.00 0.00 4.17
509 549 2.354805 GGAGTTGGCCTTAGTACACCAG 60.355 54.545 3.32 0.00 32.79 4.00
510 550 2.565834 GAGTTGGCCTTAGTACACCAGA 59.434 50.000 3.32 0.00 32.79 3.86
511 551 2.302157 AGTTGGCCTTAGTACACCAGAC 59.698 50.000 3.32 0.00 32.79 3.51
512 552 0.892755 TGGCCTTAGTACACCAGACG 59.107 55.000 3.32 0.00 0.00 4.18
513 553 0.175073 GGCCTTAGTACACCAGACGG 59.825 60.000 0.00 0.00 38.77 4.79
514 554 0.175073 GCCTTAGTACACCAGACGGG 59.825 60.000 0.00 0.00 44.81 5.28
515 555 1.843368 CCTTAGTACACCAGACGGGA 58.157 55.000 0.00 0.00 41.15 5.14
516 556 1.475682 CCTTAGTACACCAGACGGGAC 59.524 57.143 0.00 0.00 41.15 4.46
529 569 3.590824 GGGACGGATTGTTGGCTG 58.409 61.111 0.00 0.00 0.00 4.85
530 570 2.046285 GGGACGGATTGTTGGCTGG 61.046 63.158 0.00 0.00 0.00 4.85
531 571 1.002624 GGACGGATTGTTGGCTGGA 60.003 57.895 0.00 0.00 0.00 3.86
532 572 0.394352 GGACGGATTGTTGGCTGGAT 60.394 55.000 0.00 0.00 0.00 3.41
533 573 1.017387 GACGGATTGTTGGCTGGATC 58.983 55.000 0.00 0.00 0.00 3.36
534 574 0.327924 ACGGATTGTTGGCTGGATCA 59.672 50.000 0.00 0.00 0.00 2.92
535 575 1.271871 ACGGATTGTTGGCTGGATCAA 60.272 47.619 0.00 0.00 0.00 2.57
536 576 1.818060 CGGATTGTTGGCTGGATCAAA 59.182 47.619 0.00 0.00 0.00 2.69
537 577 2.159338 CGGATTGTTGGCTGGATCAAAG 60.159 50.000 0.00 0.00 0.00 2.77
538 578 2.417787 GGATTGTTGGCTGGATCAAAGC 60.418 50.000 10.40 10.40 40.06 3.51
545 585 2.426842 GCTGGATCAAAGCCCTTAGT 57.573 50.000 8.14 0.00 34.45 2.24
546 586 2.728007 GCTGGATCAAAGCCCTTAGTT 58.272 47.619 8.14 0.00 34.45 2.24
547 587 3.092301 GCTGGATCAAAGCCCTTAGTTT 58.908 45.455 8.14 0.00 34.45 2.66
548 588 3.129462 GCTGGATCAAAGCCCTTAGTTTC 59.871 47.826 8.14 0.00 34.45 2.78
549 589 4.593956 CTGGATCAAAGCCCTTAGTTTCT 58.406 43.478 0.00 0.00 0.00 2.52
550 590 4.998051 TGGATCAAAGCCCTTAGTTTCTT 58.002 39.130 0.00 0.00 0.00 2.52
551 591 4.766891 TGGATCAAAGCCCTTAGTTTCTTG 59.233 41.667 0.00 0.00 0.00 3.02
564 604 4.813296 AGTTTCTTGTTAGTTGCCTTCG 57.187 40.909 0.00 0.00 0.00 3.79
619 659 8.495949 CAATAAAGCTCTCTAGTTCGTTGAAAA 58.504 33.333 0.00 0.00 0.00 2.29
654 696 2.126502 CACGAAATGTTGGCGCCC 60.127 61.111 26.77 10.34 0.00 6.13
747 789 3.901797 CTGCCAAGTCGTCACCCCC 62.902 68.421 0.00 0.00 0.00 5.40
777 819 2.948720 AACCTGCGCCACTCCTCTC 61.949 63.158 4.18 0.00 0.00 3.20
787 829 4.082523 CTCCTCTCCGCGGCCAAA 62.083 66.667 23.51 1.03 0.00 3.28
789 831 2.438434 CCTCTCCGCGGCCAAATT 60.438 61.111 23.51 0.00 0.00 1.82
790 832 2.764314 CCTCTCCGCGGCCAAATTG 61.764 63.158 23.51 5.72 0.00 2.32
791 833 2.033448 TCTCCGCGGCCAAATTGT 59.967 55.556 23.51 0.00 0.00 2.71
794 836 1.656818 CTCCGCGGCCAAATTGTCAT 61.657 55.000 23.51 0.00 0.00 3.06
820 862 2.043227 TCACCCACCACAAAAATTCCC 58.957 47.619 0.00 0.00 0.00 3.97
824 866 0.320334 CACCACAAAAATTCCCCGCC 60.320 55.000 0.00 0.00 0.00 6.13
825 867 1.080161 CCACAAAAATTCCCCGCCG 60.080 57.895 0.00 0.00 0.00 6.46
826 868 1.663173 CACAAAAATTCCCCGCCGT 59.337 52.632 0.00 0.00 0.00 5.68
827 869 0.882474 CACAAAAATTCCCCGCCGTA 59.118 50.000 0.00 0.00 0.00 4.02
828 870 1.135517 CACAAAAATTCCCCGCCGTAG 60.136 52.381 0.00 0.00 0.00 3.51
829 871 0.179148 CAAAAATTCCCCGCCGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
852 894 4.852388 GGGAAGCTGCCCTTTTCT 57.148 55.556 24.41 0.00 45.12 2.52
853 895 3.057749 GGGAAGCTGCCCTTTTCTT 57.942 52.632 24.41 0.00 45.12 2.52
854 896 1.342074 GGGAAGCTGCCCTTTTCTTT 58.658 50.000 24.41 0.00 45.12 2.52
855 897 2.525368 GGGAAGCTGCCCTTTTCTTTA 58.475 47.619 24.41 0.00 45.12 1.85
856 898 2.231478 GGGAAGCTGCCCTTTTCTTTAC 59.769 50.000 24.41 0.00 45.12 2.01
857 899 3.157881 GGAAGCTGCCCTTTTCTTTACT 58.842 45.455 0.00 0.00 32.78 2.24
858 900 3.574396 GGAAGCTGCCCTTTTCTTTACTT 59.426 43.478 0.00 0.00 32.78 2.24
859 901 4.039245 GGAAGCTGCCCTTTTCTTTACTTT 59.961 41.667 0.00 0.00 32.78 2.66
860 902 5.453339 GGAAGCTGCCCTTTTCTTTACTTTT 60.453 40.000 0.00 0.00 32.78 2.27
861 903 5.201713 AGCTGCCCTTTTCTTTACTTTTC 57.798 39.130 0.00 0.00 0.00 2.29
862 904 4.895889 AGCTGCCCTTTTCTTTACTTTTCT 59.104 37.500 0.00 0.00 0.00 2.52
916 958 0.170116 GTGCTCGTCTCTGACCTCTG 59.830 60.000 0.00 0.00 0.00 3.35
941 983 2.156098 GTCGGCACCCAACTGAAAATA 58.844 47.619 0.00 0.00 0.00 1.40
976 1022 1.335182 TCTCCTCGATCGATTGACTGC 59.665 52.381 19.78 0.00 0.00 4.40
980 1026 2.480244 CCTCGATCGATTGACTGCTTCA 60.480 50.000 19.78 0.00 0.00 3.02
1134 1185 4.168291 GCCAGCGGAGGGAAGAGG 62.168 72.222 0.00 0.00 0.00 3.69
1278 1333 4.363991 AGAATATTCCAGCATCTGACCC 57.636 45.455 11.92 0.00 32.44 4.46
1315 1379 1.815212 CGCTCGCTTGATGACGGATG 61.815 60.000 0.00 0.00 0.00 3.51
1475 1545 3.123620 CTCGACAAGCTGCAGGGC 61.124 66.667 17.12 2.13 0.00 5.19
1645 1716 2.571212 TGGTTTCAGAAATGTGACGCT 58.429 42.857 0.00 0.00 0.00 5.07
1662 1739 1.672881 CGCTGAACTCCATTCCCAATC 59.327 52.381 0.00 0.00 36.36 2.67
1667 1744 0.744414 ACTCCATTCCCAATCGTGCG 60.744 55.000 0.00 0.00 0.00 5.34
1812 1889 1.276421 AGTTTGAGATCACCGGTGAGG 59.724 52.381 37.98 13.89 43.61 3.86
1815 1892 1.191489 TGAGATCACCGGTGAGGCAA 61.191 55.000 37.98 22.78 46.52 4.52
1816 1893 0.179000 GAGATCACCGGTGAGGCAAT 59.821 55.000 37.98 23.96 46.52 3.56
1833 1910 1.009829 AATTCTCGATTCTGCACGCC 58.990 50.000 0.00 0.00 0.00 5.68
1866 1945 4.706476 TGATTGATGGGTGTTTCCTGAATC 59.294 41.667 0.00 0.00 36.25 2.52
1867 1946 3.805066 TGATGGGTGTTTCCTGAATCA 57.195 42.857 0.00 0.00 36.25 2.57
1881 1960 0.309922 GAATCATGATGGCTGCCACG 59.690 55.000 25.99 12.94 35.80 4.94
1933 2012 0.317603 ACAAGACGACGGTGAAGACG 60.318 55.000 0.00 0.00 35.60 4.18
1936 2015 0.879765 AGACGACGGTGAAGACGAAT 59.120 50.000 0.00 0.00 33.85 3.34
2096 2175 1.666011 GAGCTCAGGGTGTTCGTCA 59.334 57.895 9.40 0.00 0.00 4.35
2099 2178 1.078759 GCTCAGGGTGTTCGTCATCG 61.079 60.000 0.00 0.00 38.55 3.84
2111 2190 0.782981 CGTCATCGCATGAGCTGATC 59.217 55.000 6.27 0.75 40.53 2.92
2120 2204 2.032302 GCATGAGCTGATCTTTGCTGAG 59.968 50.000 11.86 4.67 39.91 3.35
2121 2205 3.532542 CATGAGCTGATCTTTGCTGAGA 58.467 45.455 11.86 0.00 39.91 3.27
2144 2240 3.504134 TCTCTGTCTCTGTACTGCTTCAC 59.496 47.826 0.00 0.00 0.00 3.18
2145 2241 3.491342 TCTGTCTCTGTACTGCTTCACT 58.509 45.455 0.00 0.00 0.00 3.41
2187 2284 8.519526 CAGAAGTCTTGTCTAGTTCTATGTCTT 58.480 37.037 0.00 0.00 35.37 3.01
2188 2285 8.736244 AGAAGTCTTGTCTAGTTCTATGTCTTC 58.264 37.037 0.00 0.00 35.37 2.87
2198 2295 2.356135 TCTATGTCTTCTTTTGCCGGC 58.644 47.619 22.73 22.73 0.00 6.13
2213 2310 2.297880 TGCCGGCGTAGTATTGTGATAT 59.702 45.455 23.90 0.00 0.00 1.63
2274 2371 9.517609 TTTTTCTCTCTAGCAGATTATTACGTC 57.482 33.333 0.00 0.00 0.00 4.34
2332 2429 9.982291 CTTAAGTTTTAATTATGTGCTAGCGAA 57.018 29.630 10.77 0.20 0.00 4.70
2362 2466 7.872163 TTTCATGTTAAAACTTGCTGCTATG 57.128 32.000 0.00 0.00 34.95 2.23
2372 2476 3.128242 ACTTGCTGCTATGATGCTCAAAC 59.872 43.478 0.00 0.00 0.00 2.93
2376 2480 0.947244 GCTATGATGCTCAAACGGGG 59.053 55.000 0.00 0.00 0.00 5.73
2407 2511 3.127425 AGTTCTTGCTCGCTTAGGTTT 57.873 42.857 0.00 0.00 0.00 3.27
2519 2624 7.378966 TGGATTTTACAAAATGTGGCGAATTA 58.621 30.769 4.70 0.00 38.64 1.40
2762 2905 2.668279 CGAAACCAGAAAATTCGGCCAG 60.668 50.000 2.24 0.00 41.52 4.85
2776 2919 0.249911 GGCCAGTCCATTACGGCTAG 60.250 60.000 0.00 0.00 43.20 3.42
2777 2920 0.249911 GCCAGTCCATTACGGCTAGG 60.250 60.000 0.00 0.00 41.58 3.02
2778 2921 1.120530 CCAGTCCATTACGGCTAGGT 58.879 55.000 0.00 0.00 33.14 3.08
2779 2922 1.485066 CCAGTCCATTACGGCTAGGTT 59.515 52.381 0.00 0.00 33.14 3.50
2780 2923 2.093128 CCAGTCCATTACGGCTAGGTTT 60.093 50.000 0.00 0.00 33.14 3.27
2781 2924 2.936498 CAGTCCATTACGGCTAGGTTTG 59.064 50.000 0.00 0.00 33.14 2.93
2782 2925 2.570302 AGTCCATTACGGCTAGGTTTGT 59.430 45.455 0.00 0.00 33.14 2.83
2783 2926 2.676342 GTCCATTACGGCTAGGTTTGTG 59.324 50.000 0.00 0.00 33.14 3.33
2784 2927 2.303600 TCCATTACGGCTAGGTTTGTGT 59.696 45.455 0.00 0.00 33.14 3.72
2785 2928 3.078837 CCATTACGGCTAGGTTTGTGTT 58.921 45.455 0.00 0.00 0.00 3.32
2786 2929 3.119990 CCATTACGGCTAGGTTTGTGTTG 60.120 47.826 0.00 0.00 0.00 3.33
2787 2930 3.472283 TTACGGCTAGGTTTGTGTTGA 57.528 42.857 0.00 0.00 0.00 3.18
2788 2931 2.335316 ACGGCTAGGTTTGTGTTGAA 57.665 45.000 0.00 0.00 0.00 2.69
2789 2932 1.944709 ACGGCTAGGTTTGTGTTGAAC 59.055 47.619 0.00 0.00 0.00 3.18
2790 2933 1.944024 CGGCTAGGTTTGTGTTGAACA 59.056 47.619 0.00 0.00 36.85 3.18
2791 2934 2.552315 CGGCTAGGTTTGTGTTGAACAT 59.448 45.455 0.00 0.00 38.99 2.71
2792 2935 3.609175 CGGCTAGGTTTGTGTTGAACATG 60.609 47.826 0.00 0.00 38.99 3.21
2793 2936 3.305335 GGCTAGGTTTGTGTTGAACATGG 60.305 47.826 0.00 0.00 38.99 3.66
2794 2937 3.568007 GCTAGGTTTGTGTTGAACATGGA 59.432 43.478 0.00 0.00 38.99 3.41
2795 2938 4.218417 GCTAGGTTTGTGTTGAACATGGAT 59.782 41.667 0.00 0.00 38.99 3.41
2796 2939 4.853924 AGGTTTGTGTTGAACATGGATC 57.146 40.909 0.00 0.00 38.99 3.36
2797 2940 3.573967 AGGTTTGTGTTGAACATGGATCC 59.426 43.478 4.20 4.20 38.99 3.36
2798 2941 3.573967 GGTTTGTGTTGAACATGGATCCT 59.426 43.478 14.23 0.00 38.99 3.24
2799 2942 4.321230 GGTTTGTGTTGAACATGGATCCTC 60.321 45.833 14.23 2.23 38.99 3.71
2800 2943 4.371624 TTGTGTTGAACATGGATCCTCT 57.628 40.909 14.23 0.00 38.99 3.69
2801 2944 3.678289 TGTGTTGAACATGGATCCTCTG 58.322 45.455 14.23 12.85 32.36 3.35
2802 2945 3.327464 TGTGTTGAACATGGATCCTCTGA 59.673 43.478 14.23 0.00 32.36 3.27
2803 2946 3.686726 GTGTTGAACATGGATCCTCTGAC 59.313 47.826 14.23 10.44 0.00 3.51
2804 2947 2.932614 GTTGAACATGGATCCTCTGACG 59.067 50.000 14.23 0.00 0.00 4.35
2805 2948 2.179427 TGAACATGGATCCTCTGACGT 58.821 47.619 14.23 0.00 0.00 4.34
2806 2949 2.094026 TGAACATGGATCCTCTGACGTG 60.094 50.000 14.23 0.00 0.00 4.49
2807 2950 0.826715 ACATGGATCCTCTGACGTGG 59.173 55.000 14.23 0.00 0.00 4.94
2808 2951 0.531532 CATGGATCCTCTGACGTGGC 60.532 60.000 14.23 0.00 0.00 5.01
2809 2952 0.689080 ATGGATCCTCTGACGTGGCT 60.689 55.000 14.23 0.00 0.00 4.75
2810 2953 0.033503 TGGATCCTCTGACGTGGCTA 60.034 55.000 14.23 0.00 0.00 3.93
2811 2954 1.333177 GGATCCTCTGACGTGGCTAT 58.667 55.000 3.84 0.00 0.00 2.97
2812 2955 1.271102 GGATCCTCTGACGTGGCTATC 59.729 57.143 3.84 0.00 0.00 2.08
2813 2956 1.957177 GATCCTCTGACGTGGCTATCA 59.043 52.381 0.00 0.00 0.00 2.15
2814 2957 1.103803 TCCTCTGACGTGGCTATCAC 58.896 55.000 0.00 0.00 42.74 3.06
2815 2958 1.107114 CCTCTGACGTGGCTATCACT 58.893 55.000 0.00 0.00 43.94 3.41
2816 2959 1.202348 CCTCTGACGTGGCTATCACTG 60.202 57.143 0.00 0.00 43.94 3.66
2817 2960 0.173481 TCTGACGTGGCTATCACTGC 59.827 55.000 0.00 0.00 43.94 4.40
2824 2967 3.708013 GGCTATCACTGCCTTACCC 57.292 57.895 0.00 0.00 46.38 3.69
2825 2968 1.132500 GGCTATCACTGCCTTACCCT 58.868 55.000 0.00 0.00 46.38 4.34
2826 2969 1.202698 GGCTATCACTGCCTTACCCTG 60.203 57.143 0.00 0.00 46.38 4.45
2827 2970 1.811941 GCTATCACTGCCTTACCCTGC 60.812 57.143 0.00 0.00 0.00 4.85
2828 2971 0.837272 TATCACTGCCTTACCCTGCC 59.163 55.000 0.00 0.00 0.00 4.85
2829 2972 0.916358 ATCACTGCCTTACCCTGCCT 60.916 55.000 0.00 0.00 0.00 4.75
2830 2973 1.133809 TCACTGCCTTACCCTGCCTT 61.134 55.000 0.00 0.00 0.00 4.35
2831 2974 0.678048 CACTGCCTTACCCTGCCTTC 60.678 60.000 0.00 0.00 0.00 3.46
2832 2975 1.077429 CTGCCTTACCCTGCCTTCC 60.077 63.158 0.00 0.00 0.00 3.46
2833 2976 2.275748 GCCTTACCCTGCCTTCCC 59.724 66.667 0.00 0.00 0.00 3.97
2834 2977 2.590092 CCTTACCCTGCCTTCCCG 59.410 66.667 0.00 0.00 0.00 5.14
2835 2978 2.298661 CCTTACCCTGCCTTCCCGT 61.299 63.158 0.00 0.00 0.00 5.28
2836 2979 1.221021 CTTACCCTGCCTTCCCGTC 59.779 63.158 0.00 0.00 0.00 4.79
2837 2980 2.573609 CTTACCCTGCCTTCCCGTCG 62.574 65.000 0.00 0.00 0.00 5.12
2841 2984 4.069232 CTGCCTTCCCGTCGCTGA 62.069 66.667 0.00 0.00 0.00 4.26
2842 2985 4.373116 TGCCTTCCCGTCGCTGAC 62.373 66.667 0.00 0.00 0.00 3.51
2843 2986 4.373116 GCCTTCCCGTCGCTGACA 62.373 66.667 8.91 0.00 32.09 3.58
2844 2987 2.125912 CCTTCCCGTCGCTGACAG 60.126 66.667 0.00 0.00 32.09 3.51
2845 2988 2.125912 CTTCCCGTCGCTGACAGG 60.126 66.667 4.26 6.97 31.84 4.00
2846 2989 2.915659 TTCCCGTCGCTGACAGGT 60.916 61.111 4.26 0.00 32.41 4.00
2847 2990 3.220999 TTCCCGTCGCTGACAGGTG 62.221 63.158 4.26 0.00 32.41 4.00
2848 2991 4.742201 CCCGTCGCTGACAGGTGG 62.742 72.222 4.26 2.23 32.09 4.61
2849 2992 4.742201 CCGTCGCTGACAGGTGGG 62.742 72.222 4.26 0.00 32.09 4.61
2850 2993 3.680786 CGTCGCTGACAGGTGGGA 61.681 66.667 4.26 0.00 32.09 4.37
2851 2994 2.048127 GTCGCTGACAGGTGGGAC 60.048 66.667 4.26 0.00 38.56 4.46
2852 2995 3.311110 TCGCTGACAGGTGGGACC 61.311 66.667 4.26 0.00 38.99 4.46
2853 2996 4.394712 CGCTGACAGGTGGGACCC 62.395 72.222 2.45 2.45 39.75 4.46
2854 2997 3.249189 GCTGACAGGTGGGACCCA 61.249 66.667 9.95 9.95 39.75 4.51
2873 3016 2.676471 GCTTGGCGGAACCCACAT 60.676 61.111 0.00 0.00 37.83 3.21
2874 3017 2.993471 GCTTGGCGGAACCCACATG 61.993 63.158 0.00 0.00 37.83 3.21
2875 3018 1.603455 CTTGGCGGAACCCACATGT 60.603 57.895 0.00 0.00 37.83 3.21
2876 3019 1.586154 CTTGGCGGAACCCACATGTC 61.586 60.000 0.00 0.00 37.83 3.06
2877 3020 2.033448 GGCGGAACCCACATGTCA 59.967 61.111 0.00 0.00 0.00 3.58
2878 3021 2.040544 GGCGGAACCCACATGTCAG 61.041 63.158 0.00 0.00 0.00 3.51
2879 3022 1.302511 GCGGAACCCACATGTCAGT 60.303 57.895 0.00 0.00 0.00 3.41
2880 3023 1.577328 GCGGAACCCACATGTCAGTG 61.577 60.000 0.00 0.00 39.21 3.66
2881 3024 0.034756 CGGAACCCACATGTCAGTGA 59.965 55.000 0.00 0.00 42.05 3.41
2882 3025 1.523758 GGAACCCACATGTCAGTGAC 58.476 55.000 16.68 16.68 42.05 3.67
2883 3026 1.523758 GAACCCACATGTCAGTGACC 58.476 55.000 20.43 3.45 42.05 4.02
2884 3027 0.110486 AACCCACATGTCAGTGACCC 59.890 55.000 20.43 0.00 42.05 4.46
2885 3028 1.059584 ACCCACATGTCAGTGACCCA 61.060 55.000 20.43 3.20 42.05 4.51
2886 3029 0.110295 CCCACATGTCAGTGACCCAA 59.890 55.000 20.43 2.34 42.05 4.12
2887 3030 1.272092 CCCACATGTCAGTGACCCAAT 60.272 52.381 20.43 4.81 42.05 3.16
2888 3031 1.814394 CCACATGTCAGTGACCCAATG 59.186 52.381 20.43 18.19 42.05 2.82
2889 3032 1.814394 CACATGTCAGTGACCCAATGG 59.186 52.381 20.43 8.07 42.05 3.16
2903 3046 3.882888 ACCCAATGGTATAATTGCTCACG 59.117 43.478 0.00 0.00 45.45 4.35
2904 3047 3.882888 CCCAATGGTATAATTGCTCACGT 59.117 43.478 0.00 0.00 36.42 4.49
2905 3048 4.261155 CCCAATGGTATAATTGCTCACGTG 60.261 45.833 9.94 9.94 36.42 4.49
2906 3049 4.574421 CCAATGGTATAATTGCTCACGTGA 59.426 41.667 18.88 18.88 36.42 4.35
2907 3050 5.277490 CCAATGGTATAATTGCTCACGTGAG 60.277 44.000 35.80 35.80 44.75 3.51
2908 3051 3.792401 TGGTATAATTGCTCACGTGAGG 58.208 45.455 38.72 24.14 42.29 3.86
2909 3052 3.131396 GGTATAATTGCTCACGTGAGGG 58.869 50.000 38.72 21.74 42.29 4.30
2910 3053 2.332063 ATAATTGCTCACGTGAGGGG 57.668 50.000 38.72 21.05 42.29 4.79
2911 3054 1.271856 TAATTGCTCACGTGAGGGGA 58.728 50.000 38.72 19.73 42.29 4.81
2912 3055 0.620556 AATTGCTCACGTGAGGGGAT 59.379 50.000 38.72 9.23 42.29 3.85
2913 3056 0.179000 ATTGCTCACGTGAGGGGATC 59.821 55.000 38.72 25.24 42.29 3.36
2914 3057 1.899437 TTGCTCACGTGAGGGGATCC 61.899 60.000 38.72 24.60 42.29 3.36
2942 3085 2.359848 GGTTTGTGTTACCCTCAACCAC 59.640 50.000 0.00 0.00 0.00 4.16
2958 3102 5.636123 TCAACCACAAACATACACCCTTAT 58.364 37.500 0.00 0.00 0.00 1.73
2962 3106 6.786122 ACCACAAACATACACCCTTATAAGT 58.214 36.000 11.50 0.00 0.00 2.24
2978 3122 6.408092 CCTTATAAGTGGGTCTCATAGCAACA 60.408 42.308 11.50 0.00 31.40 3.33
2996 3150 2.032528 CCCAAAGCCTCAGACGCA 59.967 61.111 0.00 0.00 0.00 5.24
2997 3151 2.328099 CCCAAAGCCTCAGACGCAC 61.328 63.158 0.00 0.00 0.00 5.34
2998 3152 2.328099 CCAAAGCCTCAGACGCACC 61.328 63.158 0.00 0.00 0.00 5.01
2999 3153 1.597854 CAAAGCCTCAGACGCACCA 60.598 57.895 0.00 0.00 0.00 4.17
3000 3154 1.148273 AAAGCCTCAGACGCACCAA 59.852 52.632 0.00 0.00 0.00 3.67
3001 3155 0.886490 AAAGCCTCAGACGCACCAAG 60.886 55.000 0.00 0.00 0.00 3.61
3002 3156 1.758440 AAGCCTCAGACGCACCAAGA 61.758 55.000 0.00 0.00 0.00 3.02
3003 3157 2.029844 GCCTCAGACGCACCAAGAC 61.030 63.158 0.00 0.00 0.00 3.01
3004 3158 1.734477 CCTCAGACGCACCAAGACG 60.734 63.158 0.00 0.00 0.00 4.18
3005 3159 1.734477 CTCAGACGCACCAAGACGG 60.734 63.158 0.00 0.00 42.50 4.79
3042 3196 6.927294 AGTTGTTTCTTGTTGGTCTTCTAG 57.073 37.500 0.00 0.00 0.00 2.43
3051 3205 2.634639 TGGTCTTCTAGCCCAACCTA 57.365 50.000 0.00 0.00 0.00 3.08
3072 3226 6.711645 ACCTATGGTCGCTAAAGTAACAAAAA 59.288 34.615 0.00 0.00 0.00 1.94
3081 3235 6.964934 CGCTAAAGTAACAAAAACTCTGTTGT 59.035 34.615 0.00 0.00 39.63 3.32
3102 3256 6.996180 TGTTATTCTCCCTACCTAGGATTG 57.004 41.667 17.98 4.61 46.63 2.67
3103 3257 6.449956 TGTTATTCTCCCTACCTAGGATTGT 58.550 40.000 17.98 0.00 46.63 2.71
3104 3258 6.906901 TGTTATTCTCCCTACCTAGGATTGTT 59.093 38.462 17.98 0.00 46.63 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.475135 GGGCCACCTCCTTCGCTC 62.475 72.222 4.39 0.00 0.00 5.03
65 66 2.168521 CTCAAATCAGGCCCTCGTCTTA 59.831 50.000 0.00 0.00 0.00 2.10
83 84 0.117140 TCTCCTCCTTCTTGGCCTCA 59.883 55.000 3.32 0.00 35.26 3.86
93 94 0.463620 GCTTCGAGCATCTCCTCCTT 59.536 55.000 2.53 0.00 41.89 3.36
96 97 0.176680 TTGGCTTCGAGCATCTCCTC 59.823 55.000 8.71 0.00 44.75 3.71
114 115 1.005924 CCCATACCAGTTCAGGCCTTT 59.994 52.381 0.00 0.00 0.00 3.11
152 192 4.969196 CGACACACAGCCAGCGGT 62.969 66.667 0.00 0.00 0.00 5.68
167 207 4.225984 CAAAATGAATGTTTTCTCGCCGA 58.774 39.130 0.00 0.00 32.78 5.54
244 284 0.465460 ACACAGCGAGCCTCCAAAAA 60.465 50.000 0.00 0.00 0.00 1.94
250 290 2.358003 AGCAACACAGCGAGCCTC 60.358 61.111 0.00 0.00 40.15 4.70
302 342 2.739784 CCTAGATCAGGCCAGCGG 59.260 66.667 5.01 0.00 37.70 5.52
303 343 2.739784 CCCTAGATCAGGCCAGCG 59.260 66.667 5.01 0.00 43.98 5.18
304 344 2.429494 GCCCTAGATCAGGCCAGC 59.571 66.667 5.01 3.58 43.98 4.85
309 349 4.070716 CAAATGCTAAGCCCTAGATCAGG 58.929 47.826 0.00 0.00 45.07 3.86
310 350 4.965814 TCAAATGCTAAGCCCTAGATCAG 58.034 43.478 0.00 0.00 0.00 2.90
311 351 5.372343 TTCAAATGCTAAGCCCTAGATCA 57.628 39.130 0.00 0.00 0.00 2.92
312 352 5.277538 CGTTTCAAATGCTAAGCCCTAGATC 60.278 44.000 0.00 0.00 0.00 2.75
313 353 4.576463 CGTTTCAAATGCTAAGCCCTAGAT 59.424 41.667 0.00 0.00 0.00 1.98
314 354 3.938963 CGTTTCAAATGCTAAGCCCTAGA 59.061 43.478 0.00 0.00 0.00 2.43
315 355 3.689649 ACGTTTCAAATGCTAAGCCCTAG 59.310 43.478 0.00 0.00 0.00 3.02
316 356 3.681593 ACGTTTCAAATGCTAAGCCCTA 58.318 40.909 0.00 0.00 0.00 3.53
317 357 2.514803 ACGTTTCAAATGCTAAGCCCT 58.485 42.857 0.00 0.00 0.00 5.19
318 358 3.297830 AACGTTTCAAATGCTAAGCCC 57.702 42.857 0.00 0.00 0.00 5.19
319 359 5.651172 AAAAACGTTTCAAATGCTAAGCC 57.349 34.783 15.01 0.00 0.00 4.35
349 389 9.042008 GCCTCATTCTATTCGTGTCTATTTAAA 57.958 33.333 0.00 0.00 0.00 1.52
350 390 8.201464 TGCCTCATTCTATTCGTGTCTATTTAA 58.799 33.333 0.00 0.00 0.00 1.52
351 391 7.722363 TGCCTCATTCTATTCGTGTCTATTTA 58.278 34.615 0.00 0.00 0.00 1.40
352 392 6.582636 TGCCTCATTCTATTCGTGTCTATTT 58.417 36.000 0.00 0.00 0.00 1.40
353 393 6.161855 TGCCTCATTCTATTCGTGTCTATT 57.838 37.500 0.00 0.00 0.00 1.73
354 394 5.791336 TGCCTCATTCTATTCGTGTCTAT 57.209 39.130 0.00 0.00 0.00 1.98
355 395 5.592104 TTGCCTCATTCTATTCGTGTCTA 57.408 39.130 0.00 0.00 0.00 2.59
356 396 4.471904 TTGCCTCATTCTATTCGTGTCT 57.528 40.909 0.00 0.00 0.00 3.41
357 397 5.294306 TCATTTGCCTCATTCTATTCGTGTC 59.706 40.000 0.00 0.00 0.00 3.67
358 398 5.185454 TCATTTGCCTCATTCTATTCGTGT 58.815 37.500 0.00 0.00 0.00 4.49
359 399 5.739752 TCATTTGCCTCATTCTATTCGTG 57.260 39.130 0.00 0.00 0.00 4.35
360 400 6.543465 TCATTCATTTGCCTCATTCTATTCGT 59.457 34.615 0.00 0.00 0.00 3.85
361 401 6.962686 TCATTCATTTGCCTCATTCTATTCG 58.037 36.000 0.00 0.00 0.00 3.34
362 402 7.368833 CCTCATTCATTTGCCTCATTCTATTC 58.631 38.462 0.00 0.00 0.00 1.75
363 403 6.239232 GCCTCATTCATTTGCCTCATTCTATT 60.239 38.462 0.00 0.00 0.00 1.73
364 404 5.243283 GCCTCATTCATTTGCCTCATTCTAT 59.757 40.000 0.00 0.00 0.00 1.98
365 405 4.581824 GCCTCATTCATTTGCCTCATTCTA 59.418 41.667 0.00 0.00 0.00 2.10
366 406 3.383825 GCCTCATTCATTTGCCTCATTCT 59.616 43.478 0.00 0.00 0.00 2.40
367 407 3.492137 GGCCTCATTCATTTGCCTCATTC 60.492 47.826 0.00 0.00 39.05 2.67
368 408 2.433239 GGCCTCATTCATTTGCCTCATT 59.567 45.455 0.00 0.00 39.05 2.57
369 409 2.037144 GGCCTCATTCATTTGCCTCAT 58.963 47.619 0.00 0.00 39.05 2.90
370 410 1.477553 GGCCTCATTCATTTGCCTCA 58.522 50.000 0.00 0.00 39.05 3.86
371 411 0.383231 CGGCCTCATTCATTTGCCTC 59.617 55.000 0.00 0.00 39.97 4.70
372 412 1.669999 GCGGCCTCATTCATTTGCCT 61.670 55.000 0.00 0.00 39.97 4.75
373 413 1.227060 GCGGCCTCATTCATTTGCC 60.227 57.895 0.00 0.00 38.74 4.52
374 414 0.803380 GTGCGGCCTCATTCATTTGC 60.803 55.000 0.00 0.00 0.00 3.68
375 415 0.523968 CGTGCGGCCTCATTCATTTG 60.524 55.000 0.00 0.00 0.00 2.32
376 416 1.802636 CGTGCGGCCTCATTCATTT 59.197 52.632 0.00 0.00 0.00 2.32
377 417 2.764314 GCGTGCGGCCTCATTCATT 61.764 57.895 0.00 0.00 34.80 2.57
378 418 3.204827 GCGTGCGGCCTCATTCAT 61.205 61.111 0.00 0.00 34.80 2.57
398 438 4.838152 CGGGCGTGTCCTGGGATG 62.838 72.222 0.00 0.00 37.58 3.51
402 442 4.308458 TGTTCGGGCGTGTCCTGG 62.308 66.667 0.00 0.00 41.78 4.45
403 443 3.041940 GTGTTCGGGCGTGTCCTG 61.042 66.667 0.00 0.00 42.90 3.86
404 444 4.657824 CGTGTTCGGGCGTGTCCT 62.658 66.667 0.00 0.00 34.39 3.85
405 445 3.927163 ATCGTGTTCGGGCGTGTCC 62.927 63.158 0.00 0.00 37.69 4.02
406 446 0.733566 TAATCGTGTTCGGGCGTGTC 60.734 55.000 0.00 0.00 37.69 3.67
407 447 1.010419 GTAATCGTGTTCGGGCGTGT 61.010 55.000 0.00 0.00 37.69 4.49
408 448 1.009903 TGTAATCGTGTTCGGGCGTG 61.010 55.000 0.00 0.00 37.69 5.34
409 449 0.319727 TTGTAATCGTGTTCGGGCGT 60.320 50.000 0.00 0.00 37.69 5.68
410 450 0.791422 TTTGTAATCGTGTTCGGGCG 59.209 50.000 0.00 0.00 37.69 6.13
411 451 2.223180 GGATTTGTAATCGTGTTCGGGC 60.223 50.000 0.00 0.00 37.69 6.13
412 452 2.353579 GGGATTTGTAATCGTGTTCGGG 59.646 50.000 0.00 0.00 37.69 5.14
413 453 3.004171 TGGGATTTGTAATCGTGTTCGG 58.996 45.455 0.00 0.00 37.69 4.30
414 454 3.682858 AGTGGGATTTGTAATCGTGTTCG 59.317 43.478 0.00 0.00 38.55 3.95
415 455 5.180492 TGAAGTGGGATTTGTAATCGTGTTC 59.820 40.000 0.00 0.00 0.00 3.18
416 456 5.067273 TGAAGTGGGATTTGTAATCGTGTT 58.933 37.500 0.00 0.00 0.00 3.32
417 457 4.647611 TGAAGTGGGATTTGTAATCGTGT 58.352 39.130 0.00 0.00 0.00 4.49
418 458 5.621197 TTGAAGTGGGATTTGTAATCGTG 57.379 39.130 0.00 0.00 0.00 4.35
419 459 5.334569 CGTTTGAAGTGGGATTTGTAATCGT 60.335 40.000 0.00 0.00 0.00 3.73
420 460 5.086058 CGTTTGAAGTGGGATTTGTAATCG 58.914 41.667 0.00 0.00 0.00 3.34
421 461 6.249035 TCGTTTGAAGTGGGATTTGTAATC 57.751 37.500 0.00 0.00 0.00 1.75
422 462 6.443792 GTTCGTTTGAAGTGGGATTTGTAAT 58.556 36.000 0.00 0.00 33.98 1.89
423 463 5.504337 CGTTCGTTTGAAGTGGGATTTGTAA 60.504 40.000 0.00 0.00 33.98 2.41
424 464 4.024725 CGTTCGTTTGAAGTGGGATTTGTA 60.025 41.667 0.00 0.00 33.98 2.41
425 465 3.242936 CGTTCGTTTGAAGTGGGATTTGT 60.243 43.478 0.00 0.00 33.98 2.83
426 466 3.002862 TCGTTCGTTTGAAGTGGGATTTG 59.997 43.478 0.00 0.00 33.98 2.32
427 467 3.207778 TCGTTCGTTTGAAGTGGGATTT 58.792 40.909 0.00 0.00 33.98 2.17
428 468 2.841215 TCGTTCGTTTGAAGTGGGATT 58.159 42.857 0.00 0.00 33.98 3.01
429 469 2.536761 TCGTTCGTTTGAAGTGGGAT 57.463 45.000 0.00 0.00 33.98 3.85
430 470 2.312722 TTCGTTCGTTTGAAGTGGGA 57.687 45.000 0.00 0.00 33.98 4.37
431 471 3.551551 GATTTCGTTCGTTTGAAGTGGG 58.448 45.455 0.00 0.00 33.98 4.61
432 472 3.551551 GGATTTCGTTCGTTTGAAGTGG 58.448 45.455 0.00 0.00 33.98 4.00
433 473 3.215244 CGGATTTCGTTCGTTTGAAGTG 58.785 45.455 0.00 0.00 33.98 3.16
434 474 2.222445 CCGGATTTCGTTCGTTTGAAGT 59.778 45.455 0.00 0.00 33.98 3.01
435 475 2.477375 TCCGGATTTCGTTCGTTTGAAG 59.523 45.455 0.00 0.00 33.98 3.02
436 476 2.221517 GTCCGGATTTCGTTCGTTTGAA 59.778 45.455 7.81 0.00 37.11 2.69
437 477 1.794116 GTCCGGATTTCGTTCGTTTGA 59.206 47.619 7.81 0.00 37.11 2.69
438 478 1.527736 TGTCCGGATTTCGTTCGTTTG 59.472 47.619 7.81 0.00 37.11 2.93
439 479 1.868469 TGTCCGGATTTCGTTCGTTT 58.132 45.000 7.81 0.00 37.11 3.60
440 480 1.868469 TTGTCCGGATTTCGTTCGTT 58.132 45.000 7.81 0.00 37.11 3.85
441 481 1.868469 TTTGTCCGGATTTCGTTCGT 58.132 45.000 7.81 0.00 37.11 3.85
442 482 2.567067 GTTTTGTCCGGATTTCGTTCG 58.433 47.619 7.81 0.00 37.11 3.95
443 483 2.567067 CGTTTTGTCCGGATTTCGTTC 58.433 47.619 7.81 0.00 37.11 3.95
444 484 2.673976 CGTTTTGTCCGGATTTCGTT 57.326 45.000 7.81 0.00 37.11 3.85
452 492 2.312436 GGACGTCCGTTTTGTCCGG 61.312 63.158 20.85 0.00 42.42 5.14
453 493 3.237290 GGACGTCCGTTTTGTCCG 58.763 61.111 20.85 0.00 42.42 4.79
463 503 2.357881 GACCCCAAACGGACGTCC 60.358 66.667 25.28 25.28 0.00 4.79
464 504 2.141122 TACGACCCCAAACGGACGTC 62.141 60.000 7.13 7.13 41.83 4.34
465 505 2.199652 TACGACCCCAAACGGACGT 61.200 57.895 9.79 9.79 43.25 4.34
466 506 1.734117 GTACGACCCCAAACGGACG 60.734 63.158 0.00 0.00 33.78 4.79
467 507 1.734117 CGTACGACCCCAAACGGAC 60.734 63.158 10.44 0.00 39.58 4.79
468 508 2.650196 CGTACGACCCCAAACGGA 59.350 61.111 10.44 0.00 0.00 4.69
470 510 2.023223 CACCGTACGACCCCAAACG 61.023 63.158 18.76 0.00 35.20 3.60
471 511 1.668793 CCACCGTACGACCCCAAAC 60.669 63.158 18.76 0.00 0.00 2.93
472 512 1.818959 CTCCACCGTACGACCCCAAA 61.819 60.000 18.76 0.00 0.00 3.28
473 513 2.203611 TCCACCGTACGACCCCAA 60.204 61.111 18.76 0.00 0.00 4.12
474 514 2.677524 CTCCACCGTACGACCCCA 60.678 66.667 18.76 0.00 0.00 4.96
475 515 2.278330 AACTCCACCGTACGACCCC 61.278 63.158 18.76 0.00 0.00 4.95
476 516 1.080298 CAACTCCACCGTACGACCC 60.080 63.158 18.76 0.00 0.00 4.46
477 517 1.080298 CCAACTCCACCGTACGACC 60.080 63.158 18.76 0.00 0.00 4.79
478 518 1.735559 GCCAACTCCACCGTACGAC 60.736 63.158 18.76 0.00 0.00 4.34
479 519 2.652530 GCCAACTCCACCGTACGA 59.347 61.111 18.76 0.00 0.00 3.43
480 520 2.433664 GGCCAACTCCACCGTACG 60.434 66.667 8.69 8.69 0.00 3.67
481 521 0.609662 TAAGGCCAACTCCACCGTAC 59.390 55.000 5.01 0.00 0.00 3.67
482 522 0.899720 CTAAGGCCAACTCCACCGTA 59.100 55.000 5.01 0.00 0.00 4.02
483 523 1.125711 ACTAAGGCCAACTCCACCGT 61.126 55.000 5.01 0.00 0.00 4.83
484 524 0.899720 TACTAAGGCCAACTCCACCG 59.100 55.000 5.01 0.00 0.00 4.94
485 525 1.626825 TGTACTAAGGCCAACTCCACC 59.373 52.381 5.01 0.00 0.00 4.61
486 526 2.614734 GGTGTACTAAGGCCAACTCCAC 60.615 54.545 5.01 4.14 0.00 4.02
487 527 1.626825 GGTGTACTAAGGCCAACTCCA 59.373 52.381 5.01 0.00 0.00 3.86
488 528 1.626825 TGGTGTACTAAGGCCAACTCC 59.373 52.381 5.01 5.98 0.00 3.85
489 529 2.565834 TCTGGTGTACTAAGGCCAACTC 59.434 50.000 5.01 0.00 0.00 3.01
490 530 2.302157 GTCTGGTGTACTAAGGCCAACT 59.698 50.000 5.01 0.00 0.00 3.16
491 531 2.696506 GTCTGGTGTACTAAGGCCAAC 58.303 52.381 5.01 0.00 0.00 3.77
492 532 1.274167 CGTCTGGTGTACTAAGGCCAA 59.726 52.381 5.01 0.00 0.00 4.52
493 533 0.892755 CGTCTGGTGTACTAAGGCCA 59.107 55.000 5.01 0.00 0.00 5.36
494 534 0.175073 CCGTCTGGTGTACTAAGGCC 59.825 60.000 0.00 0.00 0.00 5.19
495 535 0.175073 CCCGTCTGGTGTACTAAGGC 59.825 60.000 0.00 0.00 0.00 4.35
496 536 1.475682 GTCCCGTCTGGTGTACTAAGG 59.524 57.143 0.00 0.00 34.77 2.69
497 537 1.131883 CGTCCCGTCTGGTGTACTAAG 59.868 57.143 0.00 0.00 34.77 2.18
498 538 1.167851 CGTCCCGTCTGGTGTACTAA 58.832 55.000 0.00 0.00 34.77 2.24
499 539 0.677731 CCGTCCCGTCTGGTGTACTA 60.678 60.000 0.00 0.00 34.77 1.82
500 540 1.975407 CCGTCCCGTCTGGTGTACT 60.975 63.158 0.00 0.00 34.77 2.73
501 541 1.318158 ATCCGTCCCGTCTGGTGTAC 61.318 60.000 0.00 0.00 34.77 2.90
502 542 0.612732 AATCCGTCCCGTCTGGTGTA 60.613 55.000 0.00 0.00 34.77 2.90
503 543 1.911766 AATCCGTCCCGTCTGGTGT 60.912 57.895 0.00 0.00 34.77 4.16
504 544 1.447838 CAATCCGTCCCGTCTGGTG 60.448 63.158 0.00 0.00 34.77 4.17
505 545 1.477685 AACAATCCGTCCCGTCTGGT 61.478 55.000 0.00 0.00 34.77 4.00
506 546 1.019278 CAACAATCCGTCCCGTCTGG 61.019 60.000 0.00 0.00 0.00 3.86
507 547 1.019278 CCAACAATCCGTCCCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
508 548 1.295423 CCAACAATCCGTCCCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
509 549 2.396157 GCCAACAATCCGTCCCGTC 61.396 63.158 0.00 0.00 0.00 4.79
510 550 2.359478 GCCAACAATCCGTCCCGT 60.359 61.111 0.00 0.00 0.00 5.28
511 551 2.046314 AGCCAACAATCCGTCCCG 60.046 61.111 0.00 0.00 0.00 5.14
512 552 2.046285 CCAGCCAACAATCCGTCCC 61.046 63.158 0.00 0.00 0.00 4.46
513 553 0.394352 ATCCAGCCAACAATCCGTCC 60.394 55.000 0.00 0.00 0.00 4.79
514 554 1.017387 GATCCAGCCAACAATCCGTC 58.983 55.000 0.00 0.00 0.00 4.79
515 555 0.327924 TGATCCAGCCAACAATCCGT 59.672 50.000 0.00 0.00 0.00 4.69
516 556 1.462616 TTGATCCAGCCAACAATCCG 58.537 50.000 0.00 0.00 0.00 4.18
517 557 2.417787 GCTTTGATCCAGCCAACAATCC 60.418 50.000 3.08 0.00 0.00 3.01
518 558 2.884827 GCTTTGATCCAGCCAACAATC 58.115 47.619 3.08 0.00 0.00 2.67
526 566 2.426842 ACTAAGGGCTTTGATCCAGC 57.573 50.000 5.58 5.58 36.45 4.85
527 567 4.593956 AGAAACTAAGGGCTTTGATCCAG 58.406 43.478 0.00 0.00 0.00 3.86
528 568 4.657814 AGAAACTAAGGGCTTTGATCCA 57.342 40.909 0.00 0.00 0.00 3.41
529 569 4.767409 ACAAGAAACTAAGGGCTTTGATCC 59.233 41.667 0.00 0.00 0.00 3.36
530 570 5.966742 ACAAGAAACTAAGGGCTTTGATC 57.033 39.130 0.00 0.00 0.00 2.92
531 571 7.004691 ACTAACAAGAAACTAAGGGCTTTGAT 58.995 34.615 0.00 0.00 0.00 2.57
532 572 6.362248 ACTAACAAGAAACTAAGGGCTTTGA 58.638 36.000 0.00 0.00 0.00 2.69
533 573 6.635030 ACTAACAAGAAACTAAGGGCTTTG 57.365 37.500 0.00 0.00 0.00 2.77
534 574 6.461092 GCAACTAACAAGAAACTAAGGGCTTT 60.461 38.462 0.00 0.00 0.00 3.51
535 575 5.009710 GCAACTAACAAGAAACTAAGGGCTT 59.990 40.000 0.00 0.00 0.00 4.35
536 576 4.519350 GCAACTAACAAGAAACTAAGGGCT 59.481 41.667 0.00 0.00 0.00 5.19
537 577 4.321008 GGCAACTAACAAGAAACTAAGGGC 60.321 45.833 0.00 0.00 0.00 5.19
538 578 5.372547 GGCAACTAACAAGAAACTAAGGG 57.627 43.478 0.00 0.00 0.00 3.95
625 665 2.292292 ACATTTCGTGTTTTCCTTCGGG 59.708 45.455 0.00 0.00 38.01 5.14
626 666 3.619233 ACATTTCGTGTTTTCCTTCGG 57.381 42.857 0.00 0.00 38.01 4.30
637 679 2.126502 GGGCGCCAACATTTCGTG 60.127 61.111 30.85 0.00 0.00 4.35
747 789 2.125673 CAGGTTGGGACGCGTAGG 60.126 66.667 13.97 0.00 0.00 3.18
777 819 1.226660 GATGACAATTTGGCCGCGG 60.227 57.895 24.05 24.05 0.00 6.46
811 853 1.317431 GGCTACGGCGGGGAATTTTT 61.317 55.000 13.24 0.00 39.81 1.94
825 867 1.442148 CAGCTTCCCTACGGGCTAC 59.558 63.158 0.00 0.00 43.94 3.58
826 868 2.432300 GCAGCTTCCCTACGGGCTA 61.432 63.158 0.00 0.00 43.94 3.93
827 869 3.787001 GCAGCTTCCCTACGGGCT 61.787 66.667 0.00 0.00 43.94 5.19
828 870 4.858680 GGCAGCTTCCCTACGGGC 62.859 72.222 0.00 0.00 43.94 6.13
829 871 4.176752 GGGCAGCTTCCCTACGGG 62.177 72.222 15.06 0.00 46.11 5.28
855 897 9.981114 TGTTCTCAAAGAAAAGAAAAGAAAAGT 57.019 25.926 0.00 0.00 35.75 2.66
857 899 9.757227 TGTGTTCTCAAAGAAAAGAAAAGAAAA 57.243 25.926 0.00 0.00 35.75 2.29
858 900 9.757227 TTGTGTTCTCAAAGAAAAGAAAAGAAA 57.243 25.926 0.00 0.00 35.75 2.52
859 901 9.410556 CTTGTGTTCTCAAAGAAAAGAAAAGAA 57.589 29.630 0.00 0.00 35.75 2.52
860 902 8.792633 TCTTGTGTTCTCAAAGAAAAGAAAAGA 58.207 29.630 1.66 0.00 35.75 2.52
861 903 8.970691 TCTTGTGTTCTCAAAGAAAAGAAAAG 57.029 30.769 1.66 0.00 35.75 2.27
862 904 7.542130 GCTCTTGTGTTCTCAAAGAAAAGAAAA 59.458 33.333 4.69 0.00 35.75 2.29
927 969 6.715264 ACGAGAAAAGATATTTTCAGTTGGGT 59.285 34.615 23.50 11.02 41.93 4.51
933 975 7.746929 AGAGCAACGAGAAAAGATATTTTCAG 58.253 34.615 23.50 18.91 41.93 3.02
941 983 3.674682 CGAGGAGAGCAACGAGAAAAGAT 60.675 47.826 0.00 0.00 0.00 2.40
1006 1057 4.796231 AGATGACCACGACGGCGC 62.796 66.667 12.58 0.00 42.48 6.53
1315 1379 1.638467 GTCCACGAATCATGCGAGC 59.362 57.895 0.00 0.00 0.00 5.03
1475 1545 2.363795 TAGACCAGCCTCCACCGG 60.364 66.667 0.00 0.00 0.00 5.28
1556 1626 3.866582 CCGAGGGTGATGGGGAGC 61.867 72.222 0.00 0.00 0.00 4.70
1645 1716 2.710377 CACGATTGGGAATGGAGTTCA 58.290 47.619 0.00 0.00 38.64 3.18
1667 1744 1.222115 GGAACACCTGACGAGCACAC 61.222 60.000 0.00 0.00 0.00 3.82
1812 1889 1.853646 GCGTGCAGAATCGAGAATTGC 60.854 52.381 0.00 6.94 35.42 3.56
1815 1892 0.176680 AGGCGTGCAGAATCGAGAAT 59.823 50.000 0.00 0.00 0.00 2.40
1816 1893 0.037326 AAGGCGTGCAGAATCGAGAA 60.037 50.000 0.00 0.00 0.00 2.87
1866 1945 3.896133 GCCGTGGCAGCCATCATG 61.896 66.667 19.75 8.16 41.49 3.07
1881 1960 2.493907 GATACTCGCGATCCCTGGCC 62.494 65.000 10.36 0.00 0.00 5.36
1888 1967 6.459257 AAATTGATCTTGATACTCGCGATC 57.541 37.500 10.36 5.03 0.00 3.69
2096 2175 1.602851 GCAAAGATCAGCTCATGCGAT 59.397 47.619 0.00 0.00 45.42 4.58
2099 2178 2.014857 TCAGCAAAGATCAGCTCATGC 58.985 47.619 4.58 0.00 39.50 4.06
2111 2190 4.082081 ACAGAGACAGAGATCTCAGCAAAG 60.082 45.833 24.39 10.68 46.51 2.77
2120 2204 4.397730 TGAAGCAGTACAGAGACAGAGATC 59.602 45.833 0.00 0.00 0.00 2.75
2121 2205 4.157656 GTGAAGCAGTACAGAGACAGAGAT 59.842 45.833 0.00 0.00 0.00 2.75
2123 2207 3.505680 AGTGAAGCAGTACAGAGACAGAG 59.494 47.826 0.00 0.00 0.00 3.35
2124 2208 3.491342 AGTGAAGCAGTACAGAGACAGA 58.509 45.455 0.00 0.00 0.00 3.41
2157 2253 9.134734 CATAGAACTAGACAAGACTTCTGTTTC 57.865 37.037 0.00 0.00 0.00 2.78
2187 2284 2.004017 CAATACTACGCCGGCAAAAGA 58.996 47.619 28.98 8.69 0.00 2.52
2188 2285 1.735571 ACAATACTACGCCGGCAAAAG 59.264 47.619 28.98 21.50 0.00 2.27
2198 2295 7.480855 CACGTTAGCCTATATCACAATACTACG 59.519 40.741 0.00 0.00 0.00 3.51
2213 2310 1.270274 TGAAGAACGCACGTTAGCCTA 59.730 47.619 8.62 0.00 38.60 3.93
2274 2371 7.640616 AATAAAACCAAAACGAAATAACCGG 57.359 32.000 0.00 0.00 0.00 5.28
2362 2466 1.611491 TGTTTTCCCCGTTTGAGCATC 59.389 47.619 0.00 0.00 0.00 3.91
2372 2476 4.298332 CAAGAACTTCATTGTTTTCCCCG 58.702 43.478 0.00 0.00 0.00 5.73
2376 2480 4.147133 GCGAGCAAGAACTTCATTGTTTTC 59.853 41.667 0.00 0.00 0.00 2.29
2407 2511 5.760253 GCTAGAAGTGGAGCAAGCATAATAA 59.240 40.000 0.00 0.00 38.62 1.40
2732 2875 1.878953 TTCTGGTTTCGAGAAGGCAC 58.121 50.000 0.00 0.00 0.00 5.01
2742 2885 2.296190 ACTGGCCGAATTTTCTGGTTTC 59.704 45.455 0.00 0.00 0.00 2.78
2762 2905 2.676342 CACAAACCTAGCCGTAATGGAC 59.324 50.000 0.00 0.00 42.00 4.02
2776 2919 3.573967 AGGATCCATGTTCAACACAAACC 59.426 43.478 15.82 0.00 39.50 3.27
2777 2920 4.520492 AGAGGATCCATGTTCAACACAAAC 59.480 41.667 15.82 0.00 35.18 2.93
2778 2921 4.520111 CAGAGGATCCATGTTCAACACAAA 59.480 41.667 15.82 0.00 35.18 2.83
2779 2922 4.074259 CAGAGGATCCATGTTCAACACAA 58.926 43.478 15.82 0.00 35.18 3.33
2780 2923 3.327464 TCAGAGGATCCATGTTCAACACA 59.673 43.478 15.82 0.00 35.90 3.72
2781 2924 3.686726 GTCAGAGGATCCATGTTCAACAC 59.313 47.826 15.82 1.91 33.66 3.32
2782 2925 3.617288 CGTCAGAGGATCCATGTTCAACA 60.617 47.826 15.82 0.00 33.66 3.33
2783 2926 2.932614 CGTCAGAGGATCCATGTTCAAC 59.067 50.000 15.82 5.63 33.66 3.18
2784 2927 2.567169 ACGTCAGAGGATCCATGTTCAA 59.433 45.455 15.82 0.00 33.66 2.69
2785 2928 2.094026 CACGTCAGAGGATCCATGTTCA 60.094 50.000 15.82 0.00 33.66 3.18
2786 2929 2.544685 CACGTCAGAGGATCCATGTTC 58.455 52.381 15.82 2.14 33.66 3.18
2787 2930 1.208052 CCACGTCAGAGGATCCATGTT 59.792 52.381 15.82 0.00 33.66 2.71
2788 2931 0.826715 CCACGTCAGAGGATCCATGT 59.173 55.000 15.82 1.25 33.66 3.21
2789 2932 0.531532 GCCACGTCAGAGGATCCATG 60.532 60.000 15.82 12.51 33.66 3.66
2790 2933 0.689080 AGCCACGTCAGAGGATCCAT 60.689 55.000 15.82 0.00 33.66 3.41
2791 2934 0.033503 TAGCCACGTCAGAGGATCCA 60.034 55.000 15.82 0.00 33.66 3.41
2792 2935 1.271102 GATAGCCACGTCAGAGGATCC 59.729 57.143 2.48 2.48 33.66 3.36
2793 2936 1.957177 TGATAGCCACGTCAGAGGATC 59.043 52.381 0.00 0.00 0.00 3.36
2794 2937 1.683917 GTGATAGCCACGTCAGAGGAT 59.316 52.381 0.00 0.00 35.86 3.24
2795 2938 1.103803 GTGATAGCCACGTCAGAGGA 58.896 55.000 0.00 0.00 35.86 3.71
2796 2939 3.650409 GTGATAGCCACGTCAGAGG 57.350 57.895 0.00 0.00 35.86 3.69
2807 2950 1.811941 GCAGGGTAAGGCAGTGATAGC 60.812 57.143 0.00 0.00 0.00 2.97
2808 2951 1.202698 GGCAGGGTAAGGCAGTGATAG 60.203 57.143 0.00 0.00 0.00 2.08
2809 2952 0.837272 GGCAGGGTAAGGCAGTGATA 59.163 55.000 0.00 0.00 0.00 2.15
2810 2953 0.916358 AGGCAGGGTAAGGCAGTGAT 60.916 55.000 0.00 0.00 0.00 3.06
2811 2954 1.133809 AAGGCAGGGTAAGGCAGTGA 61.134 55.000 0.00 0.00 0.00 3.41
2812 2955 0.678048 GAAGGCAGGGTAAGGCAGTG 60.678 60.000 0.00 0.00 0.00 3.66
2813 2956 1.685820 GAAGGCAGGGTAAGGCAGT 59.314 57.895 0.00 0.00 0.00 4.40
2814 2957 1.077429 GGAAGGCAGGGTAAGGCAG 60.077 63.158 0.00 0.00 0.00 4.85
2815 2958 2.612493 GGGAAGGCAGGGTAAGGCA 61.612 63.158 0.00 0.00 0.00 4.75
2816 2959 2.275748 GGGAAGGCAGGGTAAGGC 59.724 66.667 0.00 0.00 0.00 4.35
2817 2960 2.253403 GACGGGAAGGCAGGGTAAGG 62.253 65.000 0.00 0.00 0.00 2.69
2818 2961 1.221021 GACGGGAAGGCAGGGTAAG 59.779 63.158 0.00 0.00 0.00 2.34
2819 2962 2.652095 CGACGGGAAGGCAGGGTAA 61.652 63.158 0.00 0.00 0.00 2.85
2820 2963 3.072468 CGACGGGAAGGCAGGGTA 61.072 66.667 0.00 0.00 0.00 3.69
2824 2967 4.069232 TCAGCGACGGGAAGGCAG 62.069 66.667 0.00 0.00 0.00 4.85
2825 2968 4.373116 GTCAGCGACGGGAAGGCA 62.373 66.667 0.00 0.00 0.00 4.75
2826 2969 4.373116 TGTCAGCGACGGGAAGGC 62.373 66.667 0.00 0.00 34.95 4.35
2827 2970 2.125912 CTGTCAGCGACGGGAAGG 60.126 66.667 8.96 0.00 35.49 3.46
2832 2975 4.742201 CCCACCTGTCAGCGACGG 62.742 72.222 9.64 9.64 38.54 4.79
2833 2976 3.680786 TCCCACCTGTCAGCGACG 61.681 66.667 0.00 0.00 34.95 5.12
2834 2977 2.048127 GTCCCACCTGTCAGCGAC 60.048 66.667 0.00 2.32 0.00 5.19
2835 2978 3.311110 GGTCCCACCTGTCAGCGA 61.311 66.667 0.00 0.00 34.73 4.93
2836 2979 4.394712 GGGTCCCACCTGTCAGCG 62.395 72.222 1.78 0.00 38.64 5.18
2837 2980 3.249189 TGGGTCCCACCTGTCAGC 61.249 66.667 6.47 0.00 38.64 4.26
2856 2999 2.676471 ATGTGGGTTCCGCCAAGC 60.676 61.111 0.00 0.00 39.65 4.01
2857 3000 1.586154 GACATGTGGGTTCCGCCAAG 61.586 60.000 1.15 0.00 39.65 3.61
2858 3001 1.602323 GACATGTGGGTTCCGCCAA 60.602 57.895 1.15 0.00 39.65 4.52
2859 3002 2.033448 GACATGTGGGTTCCGCCA 59.967 61.111 1.15 0.00 39.65 5.69
2860 3003 2.033448 TGACATGTGGGTTCCGCC 59.967 61.111 1.15 0.00 32.22 6.13
2861 3004 1.302511 ACTGACATGTGGGTTCCGC 60.303 57.895 1.15 0.00 34.12 5.54
2862 3005 0.034756 TCACTGACATGTGGGTTCCG 59.965 55.000 1.15 0.00 38.40 4.30
2863 3006 1.523758 GTCACTGACATGTGGGTTCC 58.476 55.000 1.15 0.00 38.40 3.62
2864 3007 1.523758 GGTCACTGACATGTGGGTTC 58.476 55.000 1.15 0.00 38.40 3.62
2865 3008 0.110486 GGGTCACTGACATGTGGGTT 59.890 55.000 1.15 0.00 38.40 4.11
2866 3009 1.059584 TGGGTCACTGACATGTGGGT 61.060 55.000 1.15 0.00 38.40 4.51
2867 3010 0.110295 TTGGGTCACTGACATGTGGG 59.890 55.000 1.15 0.00 38.40 4.61
2868 3011 1.814394 CATTGGGTCACTGACATGTGG 59.186 52.381 1.15 0.00 38.40 4.17
2869 3012 1.814394 CCATTGGGTCACTGACATGTG 59.186 52.381 1.15 0.00 39.15 3.21
2870 3013 2.205022 CCATTGGGTCACTGACATGT 57.795 50.000 11.34 0.00 33.68 3.21
2882 3025 3.882888 ACGTGAGCAATTATACCATTGGG 59.117 43.478 7.78 0.00 35.07 4.12
2883 3026 4.574421 TCACGTGAGCAATTATACCATTGG 59.426 41.667 15.76 0.00 35.07 3.16
2884 3027 5.277490 CCTCACGTGAGCAATTATACCATTG 60.277 44.000 35.09 15.52 40.75 2.82
2885 3028 4.816385 CCTCACGTGAGCAATTATACCATT 59.184 41.667 35.09 0.00 40.75 3.16
2886 3029 4.380531 CCTCACGTGAGCAATTATACCAT 58.619 43.478 35.09 0.00 40.75 3.55
2887 3030 3.431626 CCCTCACGTGAGCAATTATACCA 60.432 47.826 35.09 2.27 40.75 3.25
2888 3031 3.131396 CCCTCACGTGAGCAATTATACC 58.869 50.000 35.09 0.00 40.75 2.73
2889 3032 3.131396 CCCCTCACGTGAGCAATTATAC 58.869 50.000 35.09 0.00 40.75 1.47
2890 3033 3.035363 TCCCCTCACGTGAGCAATTATA 58.965 45.455 35.09 15.30 40.75 0.98
2891 3034 1.837439 TCCCCTCACGTGAGCAATTAT 59.163 47.619 35.09 0.00 40.75 1.28
2892 3035 1.271856 TCCCCTCACGTGAGCAATTA 58.728 50.000 35.09 17.52 40.75 1.40
2893 3036 0.620556 ATCCCCTCACGTGAGCAATT 59.379 50.000 35.09 18.91 40.75 2.32
2894 3037 0.179000 GATCCCCTCACGTGAGCAAT 59.821 55.000 35.09 26.30 40.75 3.56
2895 3038 1.596934 GATCCCCTCACGTGAGCAA 59.403 57.895 35.09 23.31 40.75 3.91
2896 3039 2.359169 GGATCCCCTCACGTGAGCA 61.359 63.158 35.09 22.57 40.75 4.26
2897 3040 2.060980 AGGATCCCCTCACGTGAGC 61.061 63.158 35.09 22.43 38.86 4.26
2898 3041 4.364318 AGGATCCCCTCACGTGAG 57.636 61.111 33.87 33.87 38.86 3.51
2906 3049 0.327576 AAACCGGATGAGGATCCCCT 60.328 55.000 9.46 0.00 45.12 4.79
2907 3050 0.179018 CAAACCGGATGAGGATCCCC 60.179 60.000 9.46 0.00 45.12 4.81
2908 3051 0.546598 ACAAACCGGATGAGGATCCC 59.453 55.000 9.46 0.11 45.12 3.85
2909 3052 1.065418 ACACAAACCGGATGAGGATCC 60.065 52.381 9.46 2.48 44.54 3.36
2910 3053 2.403252 ACACAAACCGGATGAGGATC 57.597 50.000 9.46 0.00 34.73 3.36
2911 3054 2.879103 AACACAAACCGGATGAGGAT 57.121 45.000 9.46 0.00 34.73 3.24
2912 3055 2.289819 GGTAACACAAACCGGATGAGGA 60.290 50.000 9.46 0.00 34.73 3.71
2913 3056 2.081462 GGTAACACAAACCGGATGAGG 58.919 52.381 9.46 7.58 37.30 3.86
2914 3057 2.081462 GGGTAACACAAACCGGATGAG 58.919 52.381 9.46 8.22 37.93 2.90
2915 3058 1.700739 AGGGTAACACAAACCGGATGA 59.299 47.619 9.46 0.00 37.93 2.92
2916 3059 2.081462 GAGGGTAACACAAACCGGATG 58.919 52.381 9.46 9.74 37.93 3.51
2917 3060 1.700739 TGAGGGTAACACAAACCGGAT 59.299 47.619 9.46 0.00 37.93 4.18
2918 3061 1.129917 TGAGGGTAACACAAACCGGA 58.870 50.000 9.46 0.00 37.93 5.14
2919 3062 1.605232 GTTGAGGGTAACACAAACCGG 59.395 52.381 0.00 0.00 37.93 5.28
2920 3063 1.605232 GGTTGAGGGTAACACAAACCG 59.395 52.381 0.00 0.00 37.93 4.44
2924 3067 3.367646 TTGTGGTTGAGGGTAACACAA 57.632 42.857 2.58 2.58 39.74 3.33
2942 3085 6.693315 CCCACTTATAAGGGTGTATGTTTG 57.307 41.667 16.73 2.04 40.34 2.93
2958 3102 3.055385 GGTGTTGCTATGAGACCCACTTA 60.055 47.826 0.00 0.00 0.00 2.24
2962 3106 0.618458 GGGTGTTGCTATGAGACCCA 59.382 55.000 0.00 0.00 46.91 4.51
2978 3122 2.032681 GCGTCTGAGGCTTTGGGT 59.967 61.111 14.59 0.00 0.00 4.51
2997 3151 4.202245 TCCTAGATTTGAACCGTCTTGG 57.798 45.455 0.00 0.00 46.41 3.61
2998 3152 5.238583 ACTTCCTAGATTTGAACCGTCTTG 58.761 41.667 0.00 0.00 0.00 3.02
2999 3153 5.485209 ACTTCCTAGATTTGAACCGTCTT 57.515 39.130 0.00 0.00 0.00 3.01
3000 3154 5.221661 ACAACTTCCTAGATTTGAACCGTCT 60.222 40.000 0.00 0.00 0.00 4.18
3001 3155 4.995487 ACAACTTCCTAGATTTGAACCGTC 59.005 41.667 0.00 0.00 0.00 4.79
3002 3156 4.969484 ACAACTTCCTAGATTTGAACCGT 58.031 39.130 0.00 0.00 0.00 4.83
3003 3157 5.941948 AACAACTTCCTAGATTTGAACCG 57.058 39.130 0.00 0.00 0.00 4.44
3004 3158 7.511959 AGAAACAACTTCCTAGATTTGAACC 57.488 36.000 0.00 0.00 34.21 3.62
3005 3159 8.406297 ACAAGAAACAACTTCCTAGATTTGAAC 58.594 33.333 0.00 0.00 34.21 3.18
3051 3205 6.485648 AGAGTTTTTGTTACTTTAGCGACCAT 59.514 34.615 0.00 0.00 0.00 3.55
3056 3210 6.964934 ACAACAGAGTTTTTGTTACTTTAGCG 59.035 34.615 0.00 0.00 36.67 4.26
3072 3226 5.342866 AGGTAGGGAGAATAACAACAGAGT 58.657 41.667 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.