Multiple sequence alignment - TraesCS2A01G145500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G145500 chr2A 100.000 3668 0 0 1378 5045 90524913 90521246 0.000000e+00 6774.0
1 TraesCS2A01G145500 chr2A 100.000 1078 0 0 1 1078 90526290 90525213 0.000000e+00 1991.0
2 TraesCS2A01G145500 chr2A 88.156 743 61 16 2566 3300 90426143 90425420 0.000000e+00 859.0
3 TraesCS2A01G145500 chr2A 92.537 469 26 1 3867 4326 90425416 90424948 0.000000e+00 664.0
4 TraesCS2A01G145500 chr2A 90.654 428 34 5 1929 2354 90426624 90426201 9.480000e-157 564.0
5 TraesCS2A01G145500 chr2A 93.207 368 19 3 1378 1744 90426970 90426608 2.070000e-148 536.0
6 TraesCS2A01G145500 chr2A 90.303 330 16 9 753 1078 90427356 90427039 7.810000e-113 418.0
7 TraesCS2A01G145500 chr2A 97.685 216 4 1 1732 1946 362436663 362436448 2.220000e-98 370.0
8 TraesCS2A01G145500 chr2A 83.413 416 45 17 4625 5025 90424795 90424389 1.030000e-96 364.0
9 TraesCS2A01G145500 chr2A 96.279 215 5 2 1724 1935 761293897 761294111 2.890000e-92 350.0
10 TraesCS2A01G145500 chr2A 86.861 137 15 3 2223 2358 90426202 90426068 3.150000e-32 150.0
11 TraesCS2A01G145500 chr2A 86.408 103 13 1 2357 2458 174425968 174426070 1.480000e-20 111.0
12 TraesCS2A01G145500 chr2A 81.731 104 16 3 2357 2458 729162312 729162414 3.240000e-12 84.2
13 TraesCS2A01G145500 chr2B 89.913 1963 153 26 2566 4500 143775553 143773608 0.000000e+00 2486.0
14 TraesCS2A01G145500 chr2B 90.784 1020 64 18 4 1006 143777621 143776615 0.000000e+00 1336.0
15 TraesCS2A01G145500 chr2B 85.265 1018 85 30 3482 4474 143278677 143277700 0.000000e+00 989.0
16 TraesCS2A01G145500 chr2B 90.120 415 34 7 4625 5035 143754717 143754306 2.670000e-147 532.0
17 TraesCS2A01G145500 chr2B 88.991 436 36 6 1929 2354 143776045 143775612 3.460000e-146 529.0
18 TraesCS2A01G145500 chr2B 91.843 331 17 5 753 1078 143280451 143280126 2.140000e-123 453.0
19 TraesCS2A01G145500 chr2B 91.395 337 11 5 1412 1744 143776351 143776029 3.580000e-121 446.0
20 TraesCS2A01G145500 chr2B 96.035 227 7 2 1422 1647 143280040 143279815 7.980000e-98 368.0
21 TraesCS2A01G145500 chr2B 96.698 212 5 2 1730 1939 780820811 780821022 8.040000e-93 351.0
22 TraesCS2A01G145500 chr2B 85.401 137 18 2 2223 2358 143775613 143775478 1.890000e-29 141.0
23 TraesCS2A01G145500 chr2D 89.669 1936 149 29 2566 4478 90715751 90713844 0.000000e+00 2420.0
24 TraesCS2A01G145500 chr2D 91.975 1433 58 20 2935 4356 90506767 90505381 0.000000e+00 1956.0
25 TraesCS2A01G145500 chr2D 94.242 1042 39 11 47 1078 90717664 90716634 0.000000e+00 1572.0
26 TraesCS2A01G145500 chr2D 90.868 668 40 10 1935 2599 90520973 90520324 0.000000e+00 876.0
27 TraesCS2A01G145500 chr2D 95.614 342 15 0 2595 2936 90508121 90507780 2.660000e-152 549.0
28 TraesCS2A01G145500 chr2D 89.953 428 39 4 1929 2354 90716234 90715809 2.660000e-152 549.0
29 TraesCS2A01G145500 chr2D 88.941 425 26 6 4625 5045 90713733 90713326 5.830000e-139 505.0
30 TraesCS2A01G145500 chr2D 91.057 369 15 5 1380 1744 90716572 90716218 2.730000e-132 483.0
31 TraesCS2A01G145500 chr2D 92.059 340 14 6 1399 1733 90521301 90520970 2.750000e-127 466.0
32 TraesCS2A01G145500 chr2D 88.298 376 24 7 4625 4988 90505232 90504865 2.790000e-117 433.0
33 TraesCS2A01G145500 chr2D 92.182 307 16 4 753 1056 90521605 90521304 1.300000e-115 427.0
34 TraesCS2A01G145500 chr2D 94.444 108 3 3 4458 4564 178776560 178776455 4.040000e-36 163.0
35 TraesCS2A01G145500 chr2D 96.939 98 1 2 4468 4565 645267802 645267897 4.040000e-36 163.0
36 TraesCS2A01G145500 chr2D 95.050 101 3 2 4465 4564 649821812 649821911 1.880000e-34 158.0
37 TraesCS2A01G145500 chr6B 98.990 198 1 1 1743 1939 537456855 537457052 2.230000e-93 353.0
38 TraesCS2A01G145500 chr6B 97.561 205 2 2 1729 1930 20920375 20920579 1.040000e-91 348.0
39 TraesCS2A01G145500 chr6B 94.175 103 5 1 4463 4565 392943754 392943653 6.760000e-34 156.0
40 TraesCS2A01G145500 chr6A 99.485 194 0 1 1738 1931 189563670 189563478 8.040000e-93 351.0
41 TraesCS2A01G145500 chr6A 82.289 367 51 9 2966 3327 76119618 76119975 6.350000e-79 305.0
42 TraesCS2A01G145500 chr4A 97.129 209 4 2 1735 1941 6886996 6886788 8.040000e-93 351.0
43 TraesCS2A01G145500 chr4A 87.500 160 19 1 2359 2517 688092892 688093051 3.100000e-42 183.0
44 TraesCS2A01G145500 chr3B 97.087 206 4 2 1743 1946 406616626 406616421 3.740000e-91 346.0
45 TraesCS2A01G145500 chr3B 95.146 103 4 1 4463 4565 107158058 107157957 1.450000e-35 161.0
46 TraesCS2A01G145500 chr3B 92.188 64 4 1 2396 2458 263273455 263273518 6.960000e-14 89.8
47 TraesCS2A01G145500 chr1B 96.651 209 6 1 1736 1943 2441602 2441394 3.740000e-91 346.0
48 TraesCS2A01G145500 chr4D 77.931 580 100 17 3031 3592 505242199 505241630 2.250000e-88 337.0
49 TraesCS2A01G145500 chr4D 81.818 264 37 7 3333 3596 490417353 490417101 1.420000e-50 211.0
50 TraesCS2A01G145500 chr5A 78.245 547 83 22 3073 3596 689432086 689431553 8.150000e-83 318.0
51 TraesCS2A01G145500 chr4B 75.839 596 99 22 3031 3596 651808602 651809182 1.390000e-65 261.0
52 TraesCS2A01G145500 chr4B 75.839 596 99 23 3031 3596 651870850 651871430 1.390000e-65 261.0
53 TraesCS2A01G145500 chr7A 93.043 115 5 2 819 931 570181790 570181677 1.120000e-36 165.0
54 TraesCS2A01G145500 chr7A 91.803 61 4 1 430 489 133620211 133620271 3.240000e-12 84.2
55 TraesCS2A01G145500 chr7B 97.872 94 2 0 4472 4565 715360407 715360314 4.040000e-36 163.0
56 TraesCS2A01G145500 chr3D 96.000 100 3 1 4471 4569 26275757 26275658 1.450000e-35 161.0
57 TraesCS2A01G145500 chr3D 90.625 64 5 1 2396 2458 184600206 184600269 3.240000e-12 84.2
58 TraesCS2A01G145500 chr3D 85.938 64 8 1 2396 2458 305629480 305629543 3.260000e-07 67.6
59 TraesCS2A01G145500 chr6D 94.175 103 5 1 4463 4565 468311655 468311554 6.760000e-34 156.0
60 TraesCS2A01G145500 chr6D 92.593 54 3 1 2405 2457 436761135 436761188 5.420000e-10 76.8
61 TraesCS2A01G145500 chr5B 95.000 100 4 1 4478 4577 419403267 419403365 6.760000e-34 156.0
62 TraesCS2A01G145500 chr1A 80.000 235 27 12 4736 4959 572020073 572020298 6.760000e-34 156.0
63 TraesCS2A01G145500 chr1D 81.618 136 11 7 2383 2517 477208385 477208263 3.210000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G145500 chr2A 90521246 90526290 5044 True 4382.500000 6774 100.000000 1 5045 2 chr2A.!!$R3 5044
1 TraesCS2A01G145500 chr2A 90424389 90427356 2967 True 507.857143 859 89.304429 753 5025 7 chr2A.!!$R2 4272
2 TraesCS2A01G145500 chr2B 143773608 143777621 4013 True 987.600000 2486 89.296800 4 4500 5 chr2B.!!$R3 4496
3 TraesCS2A01G145500 chr2B 143277700 143280451 2751 True 603.333333 989 91.047667 753 4474 3 chr2B.!!$R2 3721
4 TraesCS2A01G145500 chr2D 90713326 90717664 4338 True 1105.800000 2420 90.772400 47 5045 5 chr2D.!!$R4 4998
5 TraesCS2A01G145500 chr2D 90504865 90508121 3256 True 979.333333 1956 91.962333 2595 4988 3 chr2D.!!$R2 2393
6 TraesCS2A01G145500 chr2D 90520324 90521605 1281 True 589.666667 876 91.703000 753 2599 3 chr2D.!!$R3 1846
7 TraesCS2A01G145500 chr4D 505241630 505242199 569 True 337.000000 337 77.931000 3031 3592 1 chr4D.!!$R2 561
8 TraesCS2A01G145500 chr5A 689431553 689432086 533 True 318.000000 318 78.245000 3073 3596 1 chr5A.!!$R1 523
9 TraesCS2A01G145500 chr4B 651808602 651809182 580 False 261.000000 261 75.839000 3031 3596 1 chr4B.!!$F1 565
10 TraesCS2A01G145500 chr4B 651870850 651871430 580 False 261.000000 261 75.839000 3031 3596 1 chr4B.!!$F2 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.320247 GTGGGATCAGAGCGGCATAG 60.320 60.0 1.45 0.0 0.00 2.23 F
1898 1946 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.0 44.78 4.85 F
2606 2686 0.104855 TTGCTGGCGGCTATCACTAG 59.895 55.0 20.66 0.0 42.39 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 1968 0.108585 TTCACACACAGAAGGGGAGC 59.891 55.0 0.0 0.0 0.00 4.70 R
3052 4362 0.034767 ATGTCCCTGAGTGGTGCATG 60.035 55.0 0.0 0.0 30.67 4.06 R
4231 5696 0.107410 TCCACGCACTGTTCCAAAGT 60.107 50.0 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.553028 CCACATGCAAGGAGTGTTAGGT 60.553 50.000 0.00 0.00 0.00 3.08
45 46 2.485426 CACATGCAAGGAGTGTTAGGTG 59.515 50.000 0.00 0.00 0.00 4.00
50 51 3.118038 TGCAAGGAGTGTTAGGTGAGTTT 60.118 43.478 0.00 0.00 0.00 2.66
84 85 0.320247 GTGGGATCAGAGCGGCATAG 60.320 60.000 1.45 0.00 0.00 2.23
132 133 1.516386 CCGGTGTCATCGAGGTTCG 60.516 63.158 7.17 0.00 42.10 3.95
175 176 5.683876 TCTAGATTCTGAAAAGTCCCAGG 57.316 43.478 0.00 0.00 0.00 4.45
235 236 9.739276 AATTTACAAGGAGATACACAGATTTCA 57.261 29.630 0.00 0.00 0.00 2.69
359 369 3.118665 TCAAAGCTCATCGATCATCCACA 60.119 43.478 0.00 0.00 0.00 4.17
380 390 5.945784 CACAAGGGATTGAGAACCATTAAGA 59.054 40.000 0.00 0.00 0.00 2.10
381 391 6.434028 CACAAGGGATTGAGAACCATTAAGAA 59.566 38.462 0.00 0.00 0.00 2.52
425 435 5.759059 TCTAAGGCCAAGTTCATCATTGAT 58.241 37.500 5.01 0.00 0.00 2.57
594 606 3.327757 TCACTAGAAGCTTGTGGGACATT 59.672 43.478 2.10 0.00 44.52 2.71
598 610 5.720041 ACTAGAAGCTTGTGGGACATTAGTA 59.280 40.000 2.10 0.00 44.52 1.82
638 650 9.221933 ACTAGACATATAACGATAAGAGAGGTG 57.778 37.037 0.00 0.00 0.00 4.00
639 651 9.221933 CTAGACATATAACGATAAGAGAGGTGT 57.778 37.037 0.00 0.00 0.00 4.16
703 716 7.735326 TTGCTAGTTTTAGTTCCCTCTATCT 57.265 36.000 0.00 0.00 0.00 1.98
735 748 3.563808 TGCTTATATTCCGCAAAATCGCT 59.436 39.130 0.00 0.00 0.00 4.93
961 987 1.346068 GCAAGTGGTTCTCTCCTCTGT 59.654 52.381 0.00 0.00 32.58 3.41
962 988 2.611722 GCAAGTGGTTCTCTCCTCTGTC 60.612 54.545 0.00 0.00 32.58 3.51
963 989 2.896685 CAAGTGGTTCTCTCCTCTGTCT 59.103 50.000 0.00 0.00 32.58 3.41
964 990 2.524306 AGTGGTTCTCTCCTCTGTCTG 58.476 52.381 0.00 0.00 31.28 3.51
968 994 2.693074 GGTTCTCTCCTCTGTCTGATCC 59.307 54.545 0.00 0.00 0.00 3.36
1533 1564 5.261216 TCTAAGTTTCTAGGCAAATTGGGG 58.739 41.667 0.00 0.00 0.00 4.96
1595 1626 4.635473 TCTAGAAGTGGGAATCTGGGAAT 58.365 43.478 0.00 0.00 0.00 3.01
1596 1627 5.039645 TCTAGAAGTGGGAATCTGGGAATT 58.960 41.667 0.00 0.00 0.00 2.17
1597 1628 4.682021 AGAAGTGGGAATCTGGGAATTT 57.318 40.909 0.00 0.00 0.00 1.82
1598 1629 4.347607 AGAAGTGGGAATCTGGGAATTTG 58.652 43.478 0.00 0.00 0.00 2.32
1599 1630 2.460669 AGTGGGAATCTGGGAATTTGC 58.539 47.619 0.00 0.00 0.00 3.68
1600 1631 2.043526 AGTGGGAATCTGGGAATTTGCT 59.956 45.455 0.00 0.00 0.00 3.91
1601 1632 2.167075 GTGGGAATCTGGGAATTTGCTG 59.833 50.000 0.00 0.00 0.00 4.41
1602 1633 2.225343 TGGGAATCTGGGAATTTGCTGT 60.225 45.455 0.00 0.00 0.00 4.40
1603 1634 2.833943 GGGAATCTGGGAATTTGCTGTT 59.166 45.455 0.00 0.00 0.00 3.16
1604 1635 3.118992 GGGAATCTGGGAATTTGCTGTTC 60.119 47.826 0.00 0.00 0.00 3.18
1700 1744 4.403752 AGATGTAGCTATGCACTTCTCACA 59.596 41.667 0.00 0.00 0.00 3.58
1701 1745 4.535526 TGTAGCTATGCACTTCTCACAA 57.464 40.909 0.00 0.00 0.00 3.33
1703 1747 6.220726 TGTAGCTATGCACTTCTCACAATA 57.779 37.500 0.00 0.00 0.00 1.90
1770 1818 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1771 1819 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1772 1820 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1773 1821 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1774 1822 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1780 1828 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1781 1829 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1782 1830 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1783 1831 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1786 1834 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1798 1846 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1799 1847 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1800 1848 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1801 1849 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1802 1850 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1803 1851 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1804 1852 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1805 1853 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1806 1854 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1807 1855 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1808 1856 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1809 1857 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1810 1858 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1811 1859 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1812 1860 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1813 1861 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1814 1862 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1815 1863 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1816 1864 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1826 1874 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1827 1875 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1828 1876 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1829 1877 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1830 1878 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1831 1879 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1832 1880 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1833 1881 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1834 1882 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1835 1883 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1836 1884 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1837 1885 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1838 1886 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1839 1887 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1840 1888 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1841 1889 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1842 1890 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1843 1891 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1844 1892 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1845 1893 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1846 1894 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1847 1895 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1848 1896 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1849 1897 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1850 1898 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1851 1899 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1852 1900 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1864 1912 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1865 1913 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1866 1914 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1867 1915 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1868 1916 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1869 1917 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1870 1918 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1871 1919 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1872 1920 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1873 1921 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1874 1922 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1875 1923 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1876 1924 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
1877 1925 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
1878 1926 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
1879 1927 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
1880 1928 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
1881 1929 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
1882 1930 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
1883 1931 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
1884 1932 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
1885 1933 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
1897 1945 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1898 1946 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1899 1947 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1900 1948 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1901 1949 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1902 1950 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1903 1951 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1904 1952 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1905 1953 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1906 1954 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1907 1955 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1908 1956 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1909 1957 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1910 1958 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1911 1959 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1912 1960 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1916 1964 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
1917 1965 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
1918 1966 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
1919 1967 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
1920 1968 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
1921 1969 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1922 1970 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1923 1971 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
1935 1983 3.488423 AGGCTCCCCTTCTGTGTG 58.512 61.111 0.00 0.00 38.74 3.82
1936 1984 1.462238 AGGCTCCCCTTCTGTGTGT 60.462 57.895 0.00 0.00 38.74 3.72
1937 1985 1.302832 GGCTCCCCTTCTGTGTGTG 60.303 63.158 0.00 0.00 0.00 3.82
1938 1986 1.754745 GCTCCCCTTCTGTGTGTGA 59.245 57.895 0.00 0.00 0.00 3.58
1939 1987 0.108585 GCTCCCCTTCTGTGTGTGAA 59.891 55.000 0.00 0.00 0.00 3.18
1940 1988 1.884235 CTCCCCTTCTGTGTGTGAAC 58.116 55.000 0.00 0.00 0.00 3.18
1941 1989 1.140852 CTCCCCTTCTGTGTGTGAACA 59.859 52.381 0.00 0.00 0.00 3.18
1955 2003 6.372937 TGTGTGTGAACAGAAGATTGTGTTAA 59.627 34.615 7.95 0.00 43.60 2.01
2099 2149 5.128919 GTGAAGGAGATATGTCCAATTGCT 58.871 41.667 20.34 0.00 39.34 3.91
2120 2171 0.318441 TGACTCCAGCTCTCCAAACG 59.682 55.000 0.00 0.00 0.00 3.60
2125 2176 0.535102 CCAGCTCTCCAAACGTGGTT 60.535 55.000 0.00 0.00 46.11 3.67
2127 2178 0.468226 AGCTCTCCAAACGTGGTTCA 59.532 50.000 0.00 0.00 46.11 3.18
2128 2179 1.072331 AGCTCTCCAAACGTGGTTCAT 59.928 47.619 0.00 0.00 46.11 2.57
2129 2180 1.880027 GCTCTCCAAACGTGGTTCATT 59.120 47.619 0.00 0.00 46.11 2.57
2130 2181 2.293399 GCTCTCCAAACGTGGTTCATTT 59.707 45.455 0.00 0.00 46.11 2.32
2166 2219 1.415659 AGGAGCATGGATCTAGCACAC 59.584 52.381 0.00 0.00 0.00 3.82
2175 2228 6.293298 GCATGGATCTAGCACACTTAAGAATG 60.293 42.308 10.09 7.85 0.00 2.67
2214 2275 2.283676 AGGAAAGAGGGACGGCGA 60.284 61.111 16.62 0.00 0.00 5.54
2235 2296 5.391310 GCGAGACATGAAAGTGAATCACATT 60.391 40.000 16.38 10.02 36.74 2.71
2346 2407 5.051374 TGCGTTTGCTGTATTTTAACTTTGC 60.051 36.000 0.00 0.00 43.34 3.68
2349 2410 7.273659 CGTTTGCTGTATTTTAACTTTGCTTC 58.726 34.615 0.00 0.00 0.00 3.86
2366 2427 5.616488 TGCTTCGGAACCTTGTTTATAAC 57.384 39.130 0.00 0.00 0.00 1.89
2369 2430 3.661944 TCGGAACCTTGTTTATAACGCA 58.338 40.909 0.00 0.00 0.00 5.24
2372 2433 4.495184 CGGAACCTTGTTTATAACGCATCC 60.495 45.833 0.00 0.00 0.00 3.51
2376 2437 3.627577 CCTTGTTTATAACGCATCCTGCT 59.372 43.478 0.00 0.00 42.25 4.24
2377 2438 4.096382 CCTTGTTTATAACGCATCCTGCTT 59.904 41.667 0.00 0.00 42.25 3.91
2378 2439 4.875544 TGTTTATAACGCATCCTGCTTC 57.124 40.909 0.00 0.00 42.25 3.86
2379 2440 4.257731 TGTTTATAACGCATCCTGCTTCA 58.742 39.130 0.00 0.00 42.25 3.02
2380 2441 4.332543 TGTTTATAACGCATCCTGCTTCAG 59.667 41.667 0.00 0.00 42.25 3.02
2381 2442 2.988010 ATAACGCATCCTGCTTCAGA 57.012 45.000 0.00 0.00 42.25 3.27
2382 2443 2.010145 TAACGCATCCTGCTTCAGAC 57.990 50.000 0.00 0.00 42.25 3.51
2383 2444 1.016130 AACGCATCCTGCTTCAGACG 61.016 55.000 0.00 0.00 42.25 4.18
2384 2445 2.806856 CGCATCCTGCTTCAGACGC 61.807 63.158 0.00 0.00 42.25 5.19
2385 2446 1.449246 GCATCCTGCTTCAGACGCT 60.449 57.895 0.00 0.00 40.96 5.07
2386 2447 1.023513 GCATCCTGCTTCAGACGCTT 61.024 55.000 0.00 0.00 40.96 4.68
2387 2448 1.740380 GCATCCTGCTTCAGACGCTTA 60.740 52.381 0.00 0.00 40.96 3.09
2388 2449 2.621338 CATCCTGCTTCAGACGCTTAA 58.379 47.619 0.00 0.00 32.44 1.85
2389 2450 2.370281 TCCTGCTTCAGACGCTTAAG 57.630 50.000 0.00 0.00 32.44 1.85
2390 2451 0.723981 CCTGCTTCAGACGCTTAAGC 59.276 55.000 17.83 17.83 44.63 3.09
2393 2454 2.728368 GCTTCAGACGCTTAAGCATC 57.272 50.000 26.29 21.19 43.98 3.91
2394 2455 2.002586 GCTTCAGACGCTTAAGCATCA 58.997 47.619 24.05 2.89 43.98 3.07
2413 2474 1.153429 CTTAAGCGGTAAGGCGCCT 60.153 57.895 27.08 27.08 36.33 5.52
2414 2475 1.429148 CTTAAGCGGTAAGGCGCCTG 61.429 60.000 33.60 19.22 36.33 4.85
2469 2531 0.388649 AGGCGTCACTTAAGCGTCAG 60.389 55.000 1.29 0.00 32.74 3.51
2502 2564 1.273048 TCGCTTTAGGTCGCTTTACCA 59.727 47.619 0.00 0.00 42.40 3.25
2503 2565 1.392510 CGCTTTAGGTCGCTTTACCAC 59.607 52.381 0.00 0.00 42.40 4.16
2601 2681 0.590195 CAATCTTGCTGGCGGCTATC 59.410 55.000 20.66 0.00 42.39 2.08
2606 2686 0.104855 TTGCTGGCGGCTATCACTAG 59.895 55.000 20.66 0.00 42.39 2.57
2636 2717 6.099341 CGCTATTTAACTTTGCTTGGGAAAT 58.901 36.000 0.00 0.00 0.00 2.17
2644 2725 5.604565 ACTTTGCTTGGGAAATCTTTCTTG 58.395 37.500 2.93 0.00 37.35 3.02
2791 2872 5.763088 CAAAGGTCCTTTGCTAAACTTCTC 58.237 41.667 27.36 0.00 43.07 2.87
2817 2898 6.317789 TCTTTGGTTGAGATTAGCACAAAG 57.682 37.500 0.00 0.00 42.61 2.77
2918 3127 4.948004 CCAGAAAGGGGGTACATAGTTTTC 59.052 45.833 0.00 0.00 0.00 2.29
2964 4274 4.743644 GTCGACAGTGTAGCAGTTTTTACT 59.256 41.667 11.55 0.00 0.00 2.24
3061 4371 1.656652 CTACAGTAGCCATGCACCAC 58.343 55.000 0.00 0.00 0.00 4.16
3100 4411 4.458642 GCCTTCTCTTTCTTCTGCAGATTT 59.541 41.667 19.04 0.00 0.00 2.17
3257 4583 1.771255 GGTCACCCCTTCTGCATATCT 59.229 52.381 0.00 0.00 0.00 1.98
3459 4806 4.235079 AGGCCTTCAGTATTGCAATGTA 57.765 40.909 22.27 0.00 0.00 2.29
3498 4925 0.169009 GAGCACTGGAAATGGTTCGC 59.831 55.000 0.00 0.00 34.28 4.70
3619 5046 5.991328 TTCGATTCTATGAAACTGGCATC 57.009 39.130 0.00 0.00 0.00 3.91
3730 5165 0.243636 GTAACCCACTGTTGCATGGC 59.756 55.000 0.00 0.00 39.16 4.40
3816 5262 7.130303 GTTTGAGTGAAACAGTCTATTACCC 57.870 40.000 0.00 0.00 43.16 3.69
3817 5263 6.428083 TTGAGTGAAACAGTCTATTACCCA 57.572 37.500 7.85 0.00 41.43 4.51
3818 5264 6.037786 TGAGTGAAACAGTCTATTACCCAG 57.962 41.667 7.85 0.00 41.43 4.45
3819 5265 4.833390 AGTGAAACAGTCTATTACCCAGC 58.167 43.478 0.00 0.00 41.43 4.85
3820 5266 4.532521 AGTGAAACAGTCTATTACCCAGCT 59.467 41.667 0.00 0.00 41.43 4.24
3821 5267 5.013183 AGTGAAACAGTCTATTACCCAGCTT 59.987 40.000 0.00 0.00 41.43 3.74
3822 5268 6.212791 AGTGAAACAGTCTATTACCCAGCTTA 59.787 38.462 0.00 0.00 41.43 3.09
3972 5420 2.100631 CGACATGCTTCGTGGGGAC 61.101 63.158 0.00 0.00 34.16 4.46
4041 5489 5.251700 GGAATACCCCTACAAGGATGATGAT 59.748 44.000 0.00 0.00 37.67 2.45
4218 5683 6.490381 ACCGCAGATGTATTGTAGAGATCTTA 59.510 38.462 0.00 0.00 0.00 2.10
4231 5696 9.601810 TTGTAGAGATCTTATATGGCTTTCCTA 57.398 33.333 0.00 0.00 0.00 2.94
4246 5711 2.163818 TCCTACTTTGGAACAGTGCG 57.836 50.000 0.00 0.00 42.39 5.34
4280 5745 4.633565 GTGCTTTTACTCTGATTAGCTGCT 59.366 41.667 7.57 7.57 0.00 4.24
4365 5900 7.766219 TTCGGCTATGAAGTTATACACTTTC 57.234 36.000 3.02 0.00 46.53 2.62
4384 5919 8.190784 ACACTTTCCAGATAAAGAACTTTTGTG 58.809 33.333 5.14 0.00 38.50 3.33
4385 5920 7.649306 CACTTTCCAGATAAAGAACTTTTGTGG 59.351 37.037 5.14 10.57 38.50 4.17
4386 5921 5.705609 TCCAGATAAAGAACTTTTGTGGC 57.294 39.130 5.14 0.00 34.23 5.01
4387 5922 5.136828 TCCAGATAAAGAACTTTTGTGGCA 58.863 37.500 5.14 0.00 34.23 4.92
4420 5959 8.059461 TCTAGATTTGTCCTATGTCAGACCTTA 58.941 37.037 0.00 0.00 31.76 2.69
4424 5963 6.471233 TTGTCCTATGTCAGACCTTATGAG 57.529 41.667 0.00 0.00 31.76 2.90
4492 6041 7.411808 TCCAATATATACTACTCCCTCTGTCC 58.588 42.308 0.00 0.00 0.00 4.02
4493 6042 6.608002 CCAATATATACTACTCCCTCTGTCCC 59.392 46.154 0.00 0.00 0.00 4.46
4494 6043 6.989709 ATATATACTACTCCCTCTGTCCCA 57.010 41.667 0.00 0.00 0.00 4.37
4495 6044 5.681494 ATATACTACTCCCTCTGTCCCAA 57.319 43.478 0.00 0.00 0.00 4.12
4496 6045 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
4497 6046 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
4498 6047 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
4499 6048 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
4500 6049 5.289510 ACTACTCCCTCTGTCCCAAAATAT 58.710 41.667 0.00 0.00 0.00 1.28
4501 6050 6.449956 ACTACTCCCTCTGTCCCAAAATATA 58.550 40.000 0.00 0.00 0.00 0.86
4502 6051 6.906901 ACTACTCCCTCTGTCCCAAAATATAA 59.093 38.462 0.00 0.00 0.00 0.98
4503 6052 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
4504 6053 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
4505 6054 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
4506 6055 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
4507 6056 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
4508 6057 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
4509 6058 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
4510 6059 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
4511 6060 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
4512 6061 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
4526 6075 8.707938 AAGAACGTTTTTAACACTACACTAGT 57.292 30.769 0.46 0.00 40.28 2.57
4539 6088 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
4540 6089 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
4541 6090 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
4542 6091 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
4543 6092 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
4544 6093 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
4545 6094 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
4551 6100 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
4552 6101 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
4555 6104 9.677567 CAAAAACGTTCTTATATTATGGGATGG 57.322 33.333 0.00 0.00 0.00 3.51
4556 6105 9.635404 AAAAACGTTCTTATATTATGGGATGGA 57.365 29.630 0.00 0.00 0.00 3.41
4557 6106 8.848474 AAACGTTCTTATATTATGGGATGGAG 57.152 34.615 0.00 0.00 0.00 3.86
4558 6107 6.947464 ACGTTCTTATATTATGGGATGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
4559 6108 6.070194 ACGTTCTTATATTATGGGATGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
4596 6145 5.163953 CCATAGTAAGTGTCGCAGTTTTGAG 60.164 44.000 5.46 0.00 0.00 3.02
4601 6150 3.403038 AGTGTCGCAGTTTTGAGCTAAT 58.597 40.909 0.00 0.00 0.00 1.73
4603 6152 2.742053 TGTCGCAGTTTTGAGCTAATCC 59.258 45.455 0.00 0.00 0.00 3.01
4697 6291 6.039047 GCATTCATATTTCTTCTCTCCTGCAA 59.961 38.462 0.00 0.00 0.00 4.08
4701 6295 8.585471 TCATATTTCTTCTCTCCTGCAATTTT 57.415 30.769 0.00 0.00 0.00 1.82
4702 6296 9.028284 TCATATTTCTTCTCTCCTGCAATTTTT 57.972 29.630 0.00 0.00 0.00 1.94
4739 6335 3.138098 TGCCAGCATATTACATTCCCTCA 59.862 43.478 0.00 0.00 0.00 3.86
4744 6340 6.150641 CCAGCATATTACATTCCCTCATGAAG 59.849 42.308 0.00 0.00 0.00 3.02
4755 6351 8.057623 ACATTCCCTCATGAAGTCTATCAAAAT 58.942 33.333 0.00 0.00 32.06 1.82
4764 6360 6.216569 TGAAGTCTATCAAAATAGCTAGGCG 58.783 40.000 0.00 0.00 35.73 5.52
4817 6415 8.988064 AAACAGTATAGGCATTGATATAGACG 57.012 34.615 0.00 0.00 0.00 4.18
4928 6534 3.531207 CGCCTCCTCGCCATCTCA 61.531 66.667 0.00 0.00 0.00 3.27
4929 6535 2.420890 GCCTCCTCGCCATCTCAG 59.579 66.667 0.00 0.00 0.00 3.35
4930 6536 3.136750 CCTCCTCGCCATCTCAGG 58.863 66.667 0.00 0.00 0.00 3.86
4966 6573 1.340017 CCAGTTGTCATCCACCGGAAT 60.340 52.381 9.46 0.00 34.34 3.01
5025 6647 1.341531 CCCTCTGCCTCGGTATTACTG 59.658 57.143 0.00 0.00 0.00 2.74
5026 6648 2.032620 CCTCTGCCTCGGTATTACTGT 58.967 52.381 2.66 0.00 0.00 3.55
5027 6649 3.220110 CCTCTGCCTCGGTATTACTGTA 58.780 50.000 2.66 0.00 0.00 2.74
5028 6650 3.004524 CCTCTGCCTCGGTATTACTGTAC 59.995 52.174 2.66 0.00 0.00 2.90
5029 6651 3.884091 CTCTGCCTCGGTATTACTGTACT 59.116 47.826 2.66 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.589647 TGATTCCCTGTTGAATCCATCA 57.410 40.909 10.34 0.00 46.54 3.07
2 3 4.079038 TGGATGATTCCCTGTTGAATCCAT 60.079 41.667 10.34 5.34 46.54 3.41
8 9 3.623703 CATGTGGATGATTCCCTGTTGA 58.376 45.455 0.00 0.00 41.83 3.18
11 12 1.285667 TGCATGTGGATGATTCCCTGT 59.714 47.619 0.00 0.00 41.83 4.00
21 22 2.592102 AACACTCCTTGCATGTGGAT 57.408 45.000 12.12 1.66 36.16 3.41
44 45 3.194861 CGAGGTTGACTGACAAAACTCA 58.805 45.455 18.18 0.00 41.04 3.41
45 46 3.001330 CACGAGGTTGACTGACAAAACTC 59.999 47.826 12.36 12.36 40.36 3.01
50 51 0.105964 CCCACGAGGTTGACTGACAA 59.894 55.000 0.00 0.00 36.02 3.18
84 85 8.015658 GGAACAATATGTCCAATATAGCGAAAC 58.984 37.037 0.00 0.00 0.00 2.78
92 93 6.467677 CGGAGAGGAACAATATGTCCAATAT 58.532 40.000 3.81 0.00 0.00 1.28
96 97 2.434336 CCGGAGAGGAACAATATGTCCA 59.566 50.000 0.00 0.00 45.00 4.02
132 133 5.482908 AGAAATATCCACGAGCATATCCAC 58.517 41.667 0.00 0.00 0.00 4.02
175 176 6.519213 ATTCTCTAGAAATATCCAGCGGGAAC 60.519 42.308 10.42 0.00 41.39 3.62
213 214 6.212589 TGGTGAAATCTGTGTATCTCCTTGTA 59.787 38.462 0.00 0.00 0.00 2.41
330 340 1.065926 TCGATGAGCTTTGATGGTGCT 60.066 47.619 0.00 0.00 40.02 4.40
334 344 3.436015 GGATGATCGATGAGCTTTGATGG 59.564 47.826 0.54 0.00 0.00 3.51
359 369 8.491045 TTTTTCTTAATGGTTCTCAATCCCTT 57.509 30.769 0.00 0.00 0.00 3.95
391 401 6.374417 ACTTGGCCTTAGAATACTTCTTCA 57.626 37.500 3.32 0.00 41.14 3.02
425 435 9.778741 ATAGCTTTGATTTTATATGACTTCGGA 57.221 29.630 0.00 0.00 0.00 4.55
495 507 5.748402 TGAAGTGACATATGAATCTTGGCT 58.252 37.500 10.38 0.00 0.00 4.75
594 606 4.877823 TCTAGTTTCATCTTCCGCGTACTA 59.122 41.667 4.92 0.00 0.00 1.82
598 610 2.230508 TGTCTAGTTTCATCTTCCGCGT 59.769 45.455 4.92 0.00 0.00 6.01
638 650 8.665685 AGATGAAACCAAAAGTTACATCGATAC 58.334 33.333 0.00 0.00 37.88 2.24
639 651 8.786826 AGATGAAACCAAAAGTTACATCGATA 57.213 30.769 0.00 0.00 37.88 2.92
703 716 7.971183 TGCGGAATATAAGCAAATGTATACA 57.029 32.000 8.27 8.27 38.01 2.29
961 987 2.519541 CGGGCGAGAGGGATCAGA 60.520 66.667 0.00 0.00 0.00 3.27
962 988 4.292178 GCGGGCGAGAGGGATCAG 62.292 72.222 0.00 0.00 0.00 2.90
1533 1564 2.676839 CACCATCAGACATCAGCAGTTC 59.323 50.000 0.00 0.00 0.00 3.01
1595 1626 5.313280 TCCCTAGGTAAAAGAACAGCAAA 57.687 39.130 8.29 0.00 0.00 3.68
1596 1627 4.986054 TCCCTAGGTAAAAGAACAGCAA 57.014 40.909 8.29 0.00 0.00 3.91
1597 1628 4.534500 TGATCCCTAGGTAAAAGAACAGCA 59.466 41.667 8.29 0.00 0.00 4.41
1598 1629 4.876679 GTGATCCCTAGGTAAAAGAACAGC 59.123 45.833 8.29 0.00 0.00 4.40
1599 1630 5.109903 CGTGATCCCTAGGTAAAAGAACAG 58.890 45.833 8.29 0.00 0.00 3.16
1600 1631 4.529377 ACGTGATCCCTAGGTAAAAGAACA 59.471 41.667 8.29 0.00 0.00 3.18
1601 1632 4.868734 CACGTGATCCCTAGGTAAAAGAAC 59.131 45.833 10.90 0.00 0.00 3.01
1602 1633 4.529377 ACACGTGATCCCTAGGTAAAAGAA 59.471 41.667 25.01 0.00 0.00 2.52
1603 1634 4.081862 CACACGTGATCCCTAGGTAAAAGA 60.082 45.833 25.01 0.00 0.00 2.52
1604 1635 4.081862 TCACACGTGATCCCTAGGTAAAAG 60.082 45.833 25.01 0.00 34.14 2.27
1747 1795 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
1748 1796 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
1749 1797 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
1750 1798 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
1751 1799 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1752 1800 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1753 1801 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
1754 1802 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1755 1803 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1756 1804 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1781 1829 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1782 1830 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1783 1831 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1784 1832 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1785 1833 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1786 1834 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1787 1835 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1788 1836 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1789 1837 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1790 1838 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1791 1839 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1792 1840 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1793 1841 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1794 1842 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1795 1843 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1796 1844 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1797 1845 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1798 1846 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1799 1847 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1800 1848 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1805 1853 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1806 1854 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1807 1855 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1808 1856 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1809 1857 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1810 1858 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1811 1859 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1812 1860 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1813 1861 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1814 1862 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1815 1863 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1816 1864 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1817 1865 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1818 1866 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1819 1867 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1820 1868 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1821 1869 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1822 1870 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1823 1871 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1824 1872 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1825 1873 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1826 1874 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1827 1875 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1828 1876 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1829 1877 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1830 1878 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1831 1879 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1832 1880 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1833 1881 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1834 1882 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1835 1883 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1836 1884 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1837 1885 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1838 1886 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1839 1887 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1840 1888 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1841 1889 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1842 1890 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1856 1904 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
1857 1905 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
1858 1906 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
1859 1907 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
1860 1908 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
1861 1909 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
1862 1910 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
1863 1911 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
1864 1912 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
1865 1913 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
1880 1928 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1881 1929 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1882 1930 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1883 1931 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1884 1932 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1885 1933 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1886 1934 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1887 1935 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1888 1936 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1889 1937 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1890 1938 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1891 1939 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1892 1940 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1893 1941 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1894 1942 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1899 1947 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
1900 1948 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
1901 1949 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
1902 1950 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1903 1951 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1904 1952 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1905 1953 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1913 1961 3.721706 AGAAGGGGAGCCTTGGCG 61.722 66.667 5.95 0.00 0.00 5.69
1914 1962 2.044551 CAGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
1915 1963 1.001641 CACAGAAGGGGAGCCTTGG 60.002 63.158 0.00 0.00 0.00 3.61
1916 1964 0.607489 CACACAGAAGGGGAGCCTTG 60.607 60.000 0.00 0.00 0.00 3.61
1917 1965 1.062488 ACACACAGAAGGGGAGCCTT 61.062 55.000 0.00 0.00 0.00 4.35
1918 1966 1.462238 ACACACAGAAGGGGAGCCT 60.462 57.895 0.00 0.00 0.00 4.58
1919 1967 1.302832 CACACACAGAAGGGGAGCC 60.303 63.158 0.00 0.00 0.00 4.70
1920 1968 0.108585 TTCACACACAGAAGGGGAGC 59.891 55.000 0.00 0.00 0.00 4.70
1921 1969 1.140852 TGTTCACACACAGAAGGGGAG 59.859 52.381 0.00 0.00 0.00 4.30
1922 1970 1.140852 CTGTTCACACACAGAAGGGGA 59.859 52.381 0.00 0.00 46.29 4.81
1923 1971 1.597742 CTGTTCACACACAGAAGGGG 58.402 55.000 0.00 0.00 46.29 4.79
1929 1977 4.333649 ACACAATCTTCTGTTCACACACAG 59.666 41.667 0.00 0.00 44.96 3.66
1930 1978 4.260985 ACACAATCTTCTGTTCACACACA 58.739 39.130 0.00 0.00 0.00 3.72
1931 1979 4.882671 ACACAATCTTCTGTTCACACAC 57.117 40.909 0.00 0.00 0.00 3.82
1932 1980 6.993786 TTAACACAATCTTCTGTTCACACA 57.006 33.333 0.00 0.00 32.77 3.72
1933 1981 8.856490 AAATTAACACAATCTTCTGTTCACAC 57.144 30.769 0.00 0.00 32.77 3.82
1996 2044 5.699458 GGAGTTGTATATAATCCGGGTTGTG 59.301 44.000 11.16 0.00 0.00 3.33
2049 2097 8.107591 CATTGAACAATGGAACGTAAATGATC 57.892 34.615 16.76 0.00 43.25 2.92
2077 2126 5.378230 AGCAATTGGACATATCTCCTTCA 57.622 39.130 7.72 0.00 0.00 3.02
2099 2149 2.166459 CGTTTGGAGAGCTGGAGTCATA 59.834 50.000 0.00 0.00 0.00 2.15
2130 2181 6.294675 CCATGCTCCTTGATTCAGTACAAAAA 60.295 38.462 0.00 0.00 0.00 1.94
2145 2198 2.121948 TGTGCTAGATCCATGCTCCTT 58.878 47.619 0.00 0.00 0.00 3.36
2166 2219 6.430308 AGTGATGCATGGCTATCATTCTTAAG 59.570 38.462 2.46 0.00 35.91 1.85
2175 2228 4.635223 TCTACAAGTGATGCATGGCTATC 58.365 43.478 2.46 0.00 0.00 2.08
2214 2275 7.514784 TCAAATGTGATTCACTTTCATGTCT 57.485 32.000 17.26 0.00 35.11 3.41
2324 2385 6.747659 AGCAAAGTTAAAATACAGCAAACG 57.252 33.333 0.00 0.00 0.00 3.60
2346 2407 4.152759 TGCGTTATAAACAAGGTTCCGAAG 59.847 41.667 0.00 0.00 0.00 3.79
2349 2410 4.495184 GGATGCGTTATAAACAAGGTTCCG 60.495 45.833 0.00 0.00 0.00 4.30
2369 2430 2.898705 CTTAAGCGTCTGAAGCAGGAT 58.101 47.619 17.46 3.87 37.01 3.24
2385 2446 4.873827 CCTTACCGCTTAAGTGATGCTTAA 59.126 41.667 17.64 5.92 44.71 1.85
2386 2447 4.439057 CCTTACCGCTTAAGTGATGCTTA 58.561 43.478 17.64 0.00 38.57 3.09
2387 2448 3.270877 CCTTACCGCTTAAGTGATGCTT 58.729 45.455 17.64 0.00 41.05 3.91
2388 2449 2.906354 CCTTACCGCTTAAGTGATGCT 58.094 47.619 17.64 0.00 36.19 3.79
2389 2450 1.330829 GCCTTACCGCTTAAGTGATGC 59.669 52.381 17.64 8.20 36.19 3.91
2390 2451 1.593006 CGCCTTACCGCTTAAGTGATG 59.407 52.381 17.64 4.27 36.19 3.07
2391 2452 1.935933 CGCCTTACCGCTTAAGTGAT 58.064 50.000 17.64 2.27 36.19 3.06
2392 2453 3.429043 CGCCTTACCGCTTAAGTGA 57.571 52.632 17.64 0.00 36.19 3.41
2416 2477 1.536709 GGGCATATTTTTGAGGCGCTG 60.537 52.381 7.64 0.00 34.95 5.18
2417 2478 0.746659 GGGCATATTTTTGAGGCGCT 59.253 50.000 7.64 0.00 34.95 5.92
2418 2479 0.594796 CGGGCATATTTTTGAGGCGC 60.595 55.000 0.00 0.00 0.00 6.53
2419 2480 0.594796 GCGGGCATATTTTTGAGGCG 60.595 55.000 0.00 0.00 0.00 5.52
2420 2481 0.746659 AGCGGGCATATTTTTGAGGC 59.253 50.000 0.00 0.00 0.00 4.70
2421 2482 3.525268 AAAGCGGGCATATTTTTGAGG 57.475 42.857 0.00 0.00 0.00 3.86
2422 2483 4.610945 CCTAAAGCGGGCATATTTTTGAG 58.389 43.478 0.00 0.00 0.00 3.02
2423 2484 4.647424 CCTAAAGCGGGCATATTTTTGA 57.353 40.909 0.00 0.00 0.00 2.69
2502 2564 4.473444 CTCCCAAGCATGGTTTATATGGT 58.527 43.478 7.57 0.00 46.01 3.55
2503 2565 3.828451 CCTCCCAAGCATGGTTTATATGG 59.172 47.826 7.57 6.50 46.01 2.74
2601 2681 6.604735 AAGTTAAATAGCGCAATCCTAGTG 57.395 37.500 11.47 0.00 0.00 2.74
2606 2686 4.672409 AGCAAAGTTAAATAGCGCAATCC 58.328 39.130 11.47 0.00 0.00 3.01
2636 2717 9.817809 AAGAAGATATATAACACGCAAGAAAGA 57.182 29.630 0.00 0.00 43.62 2.52
2791 2872 6.258230 TGTGCTAATCTCAACCAAAGAATG 57.742 37.500 0.00 0.00 0.00 2.67
2855 3064 9.667107 TTTGTCCTACAAGTCTAGAAAATATGG 57.333 33.333 0.00 0.00 39.53 2.74
2863 3072 6.360370 AGCATTTTGTCCTACAAGTCTAGA 57.640 37.500 0.00 0.00 39.53 2.43
2918 3127 7.409465 ACTTCTGCTAAAGAAACGACTAAAG 57.591 36.000 5.78 0.00 44.38 1.85
3052 4362 0.034767 ATGTCCCTGAGTGGTGCATG 60.035 55.000 0.00 0.00 30.67 4.06
3061 4371 3.106738 GGCATGGAATGTCCCTGAG 57.893 57.895 3.99 0.00 45.00 3.35
3100 4411 7.864108 AATGAGCTTAATGCACTACATACAA 57.136 32.000 0.00 0.00 45.94 2.41
3135 4446 8.792633 CCTTCAATTAATGAACAAGTTGAGGTA 58.207 33.333 10.54 0.00 43.08 3.08
3459 4806 3.713764 CTCCCCTGATAACTCCACTCAAT 59.286 47.826 0.00 0.00 0.00 2.57
3649 5076 6.038356 GCAATTCTCAAGTGGAAATGGTATG 58.962 40.000 0.00 0.00 0.00 2.39
4041 5489 6.213600 AGAGCTACCCTTTGAGATGAAACTAA 59.786 38.462 0.00 0.00 0.00 2.24
4056 5504 2.711922 CGTGCGGAAGAGCTACCCT 61.712 63.158 0.00 0.00 38.13 4.34
4187 5645 4.137116 ACAATACATCTGCGGTACACAT 57.863 40.909 0.00 0.00 0.00 3.21
4231 5696 0.107410 TCCACGCACTGTTCCAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
4246 5711 6.017109 TCAGAGTAAAAGCACTTCATTTCCAC 60.017 38.462 0.00 0.00 0.00 4.02
4365 5900 5.452078 TGCCACAAAAGTTCTTTATCTGG 57.548 39.130 0.00 5.26 0.00 3.86
4384 5919 5.189180 AGGACAAATCTAGAACTTCATGCC 58.811 41.667 0.00 0.00 0.00 4.40
4385 5920 7.497249 ACATAGGACAAATCTAGAACTTCATGC 59.503 37.037 0.00 0.00 0.00 4.06
4386 5921 8.954950 ACATAGGACAAATCTAGAACTTCATG 57.045 34.615 0.00 0.00 0.00 3.07
4387 5922 8.762645 TGACATAGGACAAATCTAGAACTTCAT 58.237 33.333 0.00 0.00 0.00 2.57
4420 5959 8.918202 TTTTCTATACACTTGTCAAACCTCAT 57.082 30.769 0.00 0.00 0.00 2.90
4469 6014 7.182760 TGGGACAGAGGGAGTAGTATATATTG 58.817 42.308 0.00 0.00 0.00 1.90
4482 6031 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
4483 6032 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
4484 6033 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
4485 6034 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
4486 6035 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
4500 6049 9.801873 ACTAGTGTAGTGTTAAAAACGTTCTTA 57.198 29.630 0.00 0.00 37.69 2.10
4501 6050 8.707938 ACTAGTGTAGTGTTAAAAACGTTCTT 57.292 30.769 0.00 0.00 37.69 2.52
4516 6065 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
4517 6066 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
4518 6067 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
4525 6074 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
4526 6075 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
4529 6078 9.677567 CCATCCCATAATATAAGAACGTTTTTG 57.322 33.333 13.87 0.00 0.00 2.44
4530 6079 9.635404 TCCATCCCATAATATAAGAACGTTTTT 57.365 29.630 9.22 9.22 0.00 1.94
4531 6080 9.284968 CTCCATCCCATAATATAAGAACGTTTT 57.715 33.333 0.46 0.00 0.00 2.43
4532 6081 7.883311 CCTCCATCCCATAATATAAGAACGTTT 59.117 37.037 0.46 0.00 0.00 3.60
4533 6082 7.394816 CCTCCATCCCATAATATAAGAACGTT 58.605 38.462 0.00 0.00 0.00 3.99
4534 6083 6.070194 CCCTCCATCCCATAATATAAGAACGT 60.070 42.308 0.00 0.00 0.00 3.99
4535 6084 6.156256 TCCCTCCATCCCATAATATAAGAACG 59.844 42.308 0.00 0.00 0.00 3.95
4536 6085 7.182930 ACTCCCTCCATCCCATAATATAAGAAC 59.817 40.741 0.00 0.00 0.00 3.01
4537 6086 7.263901 ACTCCCTCCATCCCATAATATAAGAA 58.736 38.462 0.00 0.00 0.00 2.52
4538 6087 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
4539 6088 7.071321 GGTACTCCCTCCATCCCATAATATAAG 59.929 44.444 0.00 0.00 0.00 1.73
4540 6089 6.906901 GGTACTCCCTCCATCCCATAATATAA 59.093 42.308 0.00 0.00 0.00 0.98
4541 6090 6.223994 AGGTACTCCCTCCATCCCATAATATA 59.776 42.308 0.00 0.00 40.71 0.86
4542 6091 5.018962 AGGTACTCCCTCCATCCCATAATAT 59.981 44.000 0.00 0.00 40.71 1.28
4543 6092 4.363217 AGGTACTCCCTCCATCCCATAATA 59.637 45.833 0.00 0.00 40.71 0.98
4544 6093 3.146833 AGGTACTCCCTCCATCCCATAAT 59.853 47.826 0.00 0.00 40.71 1.28
4545 6094 2.527057 AGGTACTCCCTCCATCCCATAA 59.473 50.000 0.00 0.00 40.71 1.90
4546 6095 2.161624 AGGTACTCCCTCCATCCCATA 58.838 52.381 0.00 0.00 40.71 2.74
4547 6096 0.952659 AGGTACTCCCTCCATCCCAT 59.047 55.000 0.00 0.00 40.71 4.00
4548 6097 2.432756 AGGTACTCCCTCCATCCCA 58.567 57.895 0.00 0.00 40.71 4.37
4577 6126 2.544267 AGCTCAAAACTGCGACACTTAC 59.456 45.455 0.00 0.00 0.00 2.34
4702 6296 3.386078 TGCTGGCACCACTGATTTAAAAA 59.614 39.130 0.00 0.00 0.00 1.94
4703 6297 2.961741 TGCTGGCACCACTGATTTAAAA 59.038 40.909 0.00 0.00 0.00 1.52
4704 6298 2.591923 TGCTGGCACCACTGATTTAAA 58.408 42.857 0.00 0.00 0.00 1.52
4705 6299 2.284754 TGCTGGCACCACTGATTTAA 57.715 45.000 0.00 0.00 0.00 1.52
4706 6300 2.512692 ATGCTGGCACCACTGATTTA 57.487 45.000 0.00 0.00 0.00 1.40
4739 6335 6.870965 CGCCTAGCTATTTTGATAGACTTCAT 59.129 38.462 0.00 0.00 0.00 2.57
4744 6340 4.912528 GCGCCTAGCTATTTTGATAGAC 57.087 45.455 0.00 0.00 44.04 2.59
4755 6351 6.790739 AAAAGGGAATTTTTGCGCCTAGCTA 61.791 40.000 4.18 0.00 37.89 3.32
4791 6389 9.077674 CGTCTATATCAATGCCTATACTGTTTC 57.922 37.037 0.00 0.00 0.00 2.78
4797 6395 6.814076 GCACGTCTATATCAATGCCTATAC 57.186 41.667 0.00 0.00 0.00 1.47
4817 6415 1.436983 CGGGAAAGATTAGCCGGCAC 61.437 60.000 31.54 16.56 0.00 5.01
4966 6573 1.208052 GTCCAGCATACCAGAAGCTCA 59.792 52.381 0.00 0.00 36.26 4.26
5010 6632 2.615447 CGAGTACAGTAATACCGAGGCA 59.385 50.000 0.00 0.00 0.00 4.75
5025 6647 1.172175 ACCTTCCGAGTTCCGAGTAC 58.828 55.000 0.00 0.00 41.76 2.73
5026 6648 3.658398 ACCTTCCGAGTTCCGAGTA 57.342 52.632 0.00 0.00 41.76 2.59
5027 6649 4.515718 ACCTTCCGAGTTCCGAGT 57.484 55.556 0.00 0.00 41.76 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.