Multiple sequence alignment - TraesCS2A01G145100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G145100 chr2A 100.000 3280 0 0 448 3727 90069526 90066247 0.000000e+00 6058.0
1 TraesCS2A01G145100 chr2A 90.484 1156 70 16 808 1949 120737544 120738673 0.000000e+00 1489.0
2 TraesCS2A01G145100 chr2A 88.398 1155 77 16 808 1949 120753440 120754550 0.000000e+00 1338.0
3 TraesCS2A01G145100 chr2A 87.215 1142 83 26 1003 2127 90218617 90217522 0.000000e+00 1242.0
4 TraesCS2A01G145100 chr2A 89.179 767 57 11 808 1567 120721841 120722588 0.000000e+00 933.0
5 TraesCS2A01G145100 chr2A 87.234 611 35 16 3128 3727 753742101 753742679 0.000000e+00 656.0
6 TraesCS2A01G145100 chr2A 100.000 198 0 0 1 198 90069973 90069776 2.120000e-97 366.0
7 TraesCS2A01G145100 chr2A 87.189 281 18 7 2329 2599 90217432 90217160 1.680000e-78 303.0
8 TraesCS2A01G145100 chr2A 96.190 105 4 0 448 552 21553845 21553949 4.950000e-39 172.0
9 TraesCS2A01G145100 chr2A 96.226 106 3 1 448 552 449289907 449290012 4.950000e-39 172.0
10 TraesCS2A01G145100 chr2A 91.818 110 8 1 3016 3124 743575604 743575495 6.450000e-33 152.0
11 TraesCS2A01G145100 chr2A 93.814 97 4 2 549 643 4635828 4635732 1.080000e-30 145.0
12 TraesCS2A01G145100 chr2A 78.182 220 14 10 2653 2849 90217146 90216938 3.940000e-20 110.0
13 TraesCS2A01G145100 chr2D 92.940 1813 85 19 652 2453 90322278 90320498 0.000000e+00 2599.0
14 TraesCS2A01G145100 chr2D 90.696 1150 65 19 825 1949 118845141 118846273 0.000000e+00 1493.0
15 TraesCS2A01G145100 chr2D 91.011 356 8 7 2798 3129 90313484 90313129 3.390000e-125 459.0
16 TraesCS2A01G145100 chr2D 92.500 320 8 4 2474 2792 90320507 90320203 9.500000e-121 444.0
17 TraesCS2A01G145100 chr2D 89.286 84 5 2 3130 3213 343099559 343099638 6.590000e-18 102.0
18 TraesCS2A01G145100 chr2B 92.361 1584 85 22 652 2218 143001062 142999498 0.000000e+00 2222.0
19 TraesCS2A01G145100 chr2B 89.387 1159 74 21 808 1949 170937712 170938838 0.000000e+00 1413.0
20 TraesCS2A01G145100 chr2B 91.988 961 62 5 1003 1949 143133239 143132280 0.000000e+00 1334.0
21 TraesCS2A01G145100 chr2B 82.655 467 26 11 2471 2908 142999380 142998940 2.740000e-96 363.0
22 TraesCS2A01G145100 chr2B 90.256 195 10 4 5 198 174662150 174662336 2.870000e-61 246.0
23 TraesCS2A01G145100 chr2B 97.115 104 2 1 549 651 174662331 174662434 1.380000e-39 174.0
24 TraesCS2A01G145100 chr2B 77.745 337 32 18 2506 2828 143131957 143131650 2.300000e-37 167.0
25 TraesCS2A01G145100 chr2B 92.920 113 7 1 2329 2440 143132069 143131957 2.980000e-36 163.0
26 TraesCS2A01G145100 chr2B 94.340 106 5 1 448 552 74733537 74733432 1.070000e-35 161.0
27 TraesCS2A01G145100 chr2B 83.200 125 12 2 2003 2127 143132256 143132141 5.090000e-19 106.0
28 TraesCS2A01G145100 chr2B 93.750 64 4 0 587 650 43279752 43279689 3.060000e-16 97.1
29 TraesCS2A01G145100 chr2B 83.582 67 9 2 652 718 143133920 143133856 1.120000e-05 62.1
30 TraesCS2A01G145100 chr2B 100.000 33 0 0 767 799 170937654 170937686 1.120000e-05 62.1
31 TraesCS2A01G145100 chr2B 78.125 96 15 6 2921 3010 31905975 31905880 5.200000e-04 56.5
32 TraesCS2A01G145100 chr3D 88.946 968 82 15 1099 2057 442397512 442398463 0.000000e+00 1171.0
33 TraesCS2A01G145100 chr3D 90.717 614 33 6 3130 3727 67013033 67012428 0.000000e+00 797.0
34 TraesCS2A01G145100 chr3D 88.132 455 21 11 758 1201 442397080 442397512 9.230000e-141 510.0
35 TraesCS2A01G145100 chr3D 90.500 200 6 6 5 198 45648953 45648761 6.180000e-63 252.0
36 TraesCS2A01G145100 chr3D 84.889 225 24 9 2908 3124 463218718 463218940 6.270000e-53 219.0
37 TraesCS2A01G145100 chr3D 97.087 103 2 1 549 651 45648766 45648665 4.950000e-39 172.0
38 TraesCS2A01G145100 chr3D 86.667 90 7 4 2251 2336 442398582 442398670 1.100000e-15 95.3
39 TraesCS2A01G145100 chr6A 98.355 608 10 0 3120 3727 599802464 599803071 0.000000e+00 1068.0
40 TraesCS2A01G145100 chr3A 90.656 610 33 10 3131 3727 712285325 712285923 0.000000e+00 789.0
41 TraesCS2A01G145100 chr3A 91.803 244 19 1 3484 3727 686789076 686788834 4.610000e-89 339.0
42 TraesCS2A01G145100 chr3A 97.315 149 4 0 758 906 583702734 583702882 1.720000e-63 254.0
43 TraesCS2A01G145100 chr3A 89.326 178 13 3 3130 3302 686789316 686789140 6.270000e-53 219.0
44 TraesCS2A01G145100 chr3A 98.551 69 1 0 3275 3343 686789145 686789077 5.050000e-24 122.0
45 TraesCS2A01G145100 chr3A 75.641 234 35 12 2911 3124 708069735 708069504 3.060000e-16 97.1
46 TraesCS2A01G145100 chr7D 80.614 619 74 29 3130 3727 403105796 403106389 1.590000e-118 436.0
47 TraesCS2A01G145100 chr7D 84.874 238 21 12 2901 3124 205494142 205494378 3.750000e-55 226.0
48 TraesCS2A01G145100 chr7B 88.776 196 12 5 5 198 73669935 73669748 8.050000e-57 231.0
49 TraesCS2A01G145100 chr7B 84.034 238 17 15 2907 3124 741333462 741333226 3.770000e-50 209.0
50 TraesCS2A01G145100 chr7B 93.902 82 4 1 549 629 73669753 73669672 5.050000e-24 122.0
51 TraesCS2A01G145100 chr7A 78.780 410 40 28 3130 3523 674264669 674264291 8.050000e-57 231.0
52 TraesCS2A01G145100 chr7A 85.388 219 14 13 2923 3124 188573951 188573734 1.050000e-50 211.0
53 TraesCS2A01G145100 chr7A 96.078 102 3 1 448 549 438988321 438988221 8.280000e-37 165.0
54 TraesCS2A01G145100 chr7A 84.848 99 12 3 3122 3217 461018702 461018800 3.060000e-16 97.1
55 TraesCS2A01G145100 chr3B 87.245 196 15 7 5 198 478553945 478553758 8.110000e-52 215.0
56 TraesCS2A01G145100 chr3B 82.301 226 26 9 2913 3124 611699964 611699739 2.290000e-42 183.0
57 TraesCS2A01G145100 chr3B 93.220 59 2 2 2908 2964 494653077 494653135 6.630000e-13 86.1
58 TraesCS2A01G145100 chr6B 84.475 219 20 10 2919 3124 637093288 637093505 1.750000e-48 204.0
59 TraesCS2A01G145100 chr6D 84.422 199 23 2 1986 2176 10517395 10517593 4.910000e-44 189.0
60 TraesCS2A01G145100 chr4A 96.117 103 3 1 448 549 579614782 579614680 2.300000e-37 167.0
61 TraesCS2A01G145100 chr4A 76.793 237 34 15 2908 3124 182121518 182121753 3.040000e-21 113.0
62 TraesCS2A01G145100 chr5B 84.615 182 11 8 2960 3124 270666606 270666425 8.280000e-37 165.0
63 TraesCS2A01G145100 chr5A 96.040 101 3 1 449 548 401958534 401958434 2.980000e-36 163.0
64 TraesCS2A01G145100 chr5A 90.411 73 6 1 584 656 709418567 709418638 1.100000e-15 95.3
65 TraesCS2A01G145100 chr4B 95.146 103 5 0 448 550 462562425 462562527 2.980000e-36 163.0
66 TraesCS2A01G145100 chr4B 95.192 104 4 1 448 550 616937859 616937756 2.980000e-36 163.0
67 TraesCS2A01G145100 chr4B 91.429 70 5 1 587 656 671719600 671719532 1.100000e-15 95.3
68 TraesCS2A01G145100 chr1B 93.519 108 7 0 448 555 655855799 655855692 1.070000e-35 161.0
69 TraesCS2A01G145100 chr1B 78.571 182 28 9 2913 3087 297013494 297013671 3.940000e-20 110.0
70 TraesCS2A01G145100 chr1D 90.698 86 4 4 3124 3208 366229902 366229984 1.090000e-20 111.0
71 TraesCS2A01G145100 chr1D 93.939 66 4 0 587 652 405386172 405386107 2.370000e-17 100.0
72 TraesCS2A01G145100 chr1A 94.286 70 4 0 582 651 121573562 121573631 1.420000e-19 108.0
73 TraesCS2A01G145100 chr4D 91.489 47 2 2 2910 2954 213841745 213841791 3.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G145100 chr2A 90066247 90069973 3726 True 3212.000000 6058 100.000000 1 3727 2 chr2A.!!$R3 3726
1 TraesCS2A01G145100 chr2A 120737544 120738673 1129 False 1489.000000 1489 90.484000 808 1949 1 chr2A.!!$F3 1141
2 TraesCS2A01G145100 chr2A 120753440 120754550 1110 False 1338.000000 1338 88.398000 808 1949 1 chr2A.!!$F4 1141
3 TraesCS2A01G145100 chr2A 120721841 120722588 747 False 933.000000 933 89.179000 808 1567 1 chr2A.!!$F2 759
4 TraesCS2A01G145100 chr2A 753742101 753742679 578 False 656.000000 656 87.234000 3128 3727 1 chr2A.!!$F6 599
5 TraesCS2A01G145100 chr2A 90216938 90218617 1679 True 551.666667 1242 84.195333 1003 2849 3 chr2A.!!$R4 1846
6 TraesCS2A01G145100 chr2D 90320203 90322278 2075 True 1521.500000 2599 92.720000 652 2792 2 chr2D.!!$R2 2140
7 TraesCS2A01G145100 chr2D 118845141 118846273 1132 False 1493.000000 1493 90.696000 825 1949 1 chr2D.!!$F1 1124
8 TraesCS2A01G145100 chr2B 142998940 143001062 2122 True 1292.500000 2222 87.508000 652 2908 2 chr2B.!!$R4 2256
9 TraesCS2A01G145100 chr2B 170937654 170938838 1184 False 737.550000 1413 94.693500 767 1949 2 chr2B.!!$F1 1182
10 TraesCS2A01G145100 chr2B 143131650 143133920 2270 True 366.420000 1334 85.887000 652 2828 5 chr2B.!!$R5 2176
11 TraesCS2A01G145100 chr3D 67012428 67013033 605 True 797.000000 797 90.717000 3130 3727 1 chr3D.!!$R1 597
12 TraesCS2A01G145100 chr3D 442397080 442398670 1590 False 592.100000 1171 87.915000 758 2336 3 chr3D.!!$F2 1578
13 TraesCS2A01G145100 chr6A 599802464 599803071 607 False 1068.000000 1068 98.355000 3120 3727 1 chr6A.!!$F1 607
14 TraesCS2A01G145100 chr3A 712285325 712285923 598 False 789.000000 789 90.656000 3131 3727 1 chr3A.!!$F2 596
15 TraesCS2A01G145100 chr7D 403105796 403106389 593 False 436.000000 436 80.614000 3130 3727 1 chr7D.!!$F2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 531 0.036448 CTCGGCCCTCCTATACTCGA 59.964 60.0 0.00 0.0 0.00 4.04 F
543 544 0.102481 TACTCGAATTCTGGCTCCGC 59.898 55.0 3.52 0.0 0.00 5.54 F
2077 2655 0.179134 GAACGATCACCCTGTCCTCG 60.179 60.0 0.00 0.0 35.56 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 3060 0.182061 CCATCAGTCCATCACCCTGG 59.818 60.0 0.0 0.0 37.66 4.45 R
2470 3061 0.914644 ACCATCAGTCCATCACCCTG 59.085 55.0 0.0 0.0 0.00 4.45 R
3120 3809 0.462581 CTCCGCCAGTGCATGTATGT 60.463 55.0 0.0 0.0 37.32 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 7.895144 AGAATGGGAGAATATTTGGGATAGA 57.105 36.000 0.00 0.00 0.00 1.98
106 107 7.926705 AGAATGGGAGAATATTTGGGATAGAG 58.073 38.462 0.00 0.00 0.00 2.43
107 108 7.519004 AGAATGGGAGAATATTTGGGATAGAGT 59.481 37.037 0.00 0.00 0.00 3.24
108 109 7.654287 ATGGGAGAATATTTGGGATAGAGTT 57.346 36.000 0.00 0.00 0.00 3.01
109 110 6.841601 TGGGAGAATATTTGGGATAGAGTTG 58.158 40.000 0.00 0.00 0.00 3.16
110 111 6.389869 TGGGAGAATATTTGGGATAGAGTTGT 59.610 38.462 0.00 0.00 0.00 3.32
111 112 7.570982 TGGGAGAATATTTGGGATAGAGTTGTA 59.429 37.037 0.00 0.00 0.00 2.41
112 113 8.437575 GGGAGAATATTTGGGATAGAGTTGTAA 58.562 37.037 0.00 0.00 0.00 2.41
113 114 9.495572 GGAGAATATTTGGGATAGAGTTGTAAG 57.504 37.037 0.00 0.00 0.00 2.34
117 118 9.975218 AATATTTGGGATAGAGTTGTAAGTTGT 57.025 29.630 0.00 0.00 0.00 3.32
120 121 8.611654 TTTGGGATAGAGTTGTAAGTTGTAAC 57.388 34.615 0.00 0.00 0.00 2.50
121 122 7.305813 TGGGATAGAGTTGTAAGTTGTAACA 57.694 36.000 6.78 0.00 0.00 2.41
122 123 7.737869 TGGGATAGAGTTGTAAGTTGTAACAA 58.262 34.615 6.78 0.00 33.35 2.83
123 124 7.876068 TGGGATAGAGTTGTAAGTTGTAACAAG 59.124 37.037 6.78 0.00 36.33 3.16
124 125 7.333672 GGGATAGAGTTGTAAGTTGTAACAAGG 59.666 40.741 6.78 0.00 36.33 3.61
125 126 7.333672 GGATAGAGTTGTAAGTTGTAACAAGGG 59.666 40.741 6.78 0.00 36.33 3.95
126 127 5.374071 AGAGTTGTAAGTTGTAACAAGGGG 58.626 41.667 6.78 0.00 36.33 4.79
127 128 5.131475 AGAGTTGTAAGTTGTAACAAGGGGA 59.869 40.000 6.78 0.00 36.33 4.81
128 129 5.757988 AGTTGTAAGTTGTAACAAGGGGAA 58.242 37.500 6.78 0.00 36.33 3.97
129 130 5.826208 AGTTGTAAGTTGTAACAAGGGGAAG 59.174 40.000 6.78 0.00 36.33 3.46
130 131 4.721132 TGTAAGTTGTAACAAGGGGAAGG 58.279 43.478 0.00 0.00 0.00 3.46
131 132 2.287977 AGTTGTAACAAGGGGAAGGC 57.712 50.000 0.00 0.00 0.00 4.35
132 133 1.497286 AGTTGTAACAAGGGGAAGGCA 59.503 47.619 0.00 0.00 0.00 4.75
133 134 2.110011 AGTTGTAACAAGGGGAAGGCAT 59.890 45.455 0.00 0.00 0.00 4.40
134 135 2.897326 GTTGTAACAAGGGGAAGGCATT 59.103 45.455 0.00 0.00 0.00 3.56
135 136 2.802719 TGTAACAAGGGGAAGGCATTC 58.197 47.619 1.60 1.60 34.46 2.67
136 137 2.109128 TGTAACAAGGGGAAGGCATTCA 59.891 45.455 13.81 0.00 37.15 2.57
137 138 2.397044 AACAAGGGGAAGGCATTCAA 57.603 45.000 13.81 0.00 37.15 2.69
138 139 2.397044 ACAAGGGGAAGGCATTCAAA 57.603 45.000 13.81 0.00 37.15 2.69
139 140 1.970640 ACAAGGGGAAGGCATTCAAAC 59.029 47.619 13.81 2.40 37.15 2.93
140 141 1.969923 CAAGGGGAAGGCATTCAAACA 59.030 47.619 13.81 0.00 37.15 2.83
141 142 1.928868 AGGGGAAGGCATTCAAACAG 58.071 50.000 13.81 0.00 37.15 3.16
142 143 1.428912 AGGGGAAGGCATTCAAACAGA 59.571 47.619 13.81 0.00 37.15 3.41
143 144 2.158325 AGGGGAAGGCATTCAAACAGAA 60.158 45.455 13.81 0.00 41.28 3.02
144 145 2.232208 GGGGAAGGCATTCAAACAGAAG 59.768 50.000 13.81 0.00 40.15 2.85
145 146 2.232208 GGGAAGGCATTCAAACAGAAGG 59.768 50.000 13.81 0.00 40.15 3.46
146 147 3.157087 GGAAGGCATTCAAACAGAAGGA 58.843 45.455 13.81 0.00 40.35 3.36
147 148 3.057245 GGAAGGCATTCAAACAGAAGGAC 60.057 47.826 13.81 0.00 46.30 3.85
149 150 3.288809 GGCATTCAAACAGAAGGACAC 57.711 47.619 0.00 0.00 45.28 3.67
150 151 2.887152 GGCATTCAAACAGAAGGACACT 59.113 45.455 0.00 0.00 45.28 3.55
151 152 3.319122 GGCATTCAAACAGAAGGACACTT 59.681 43.478 0.00 0.00 45.28 3.16
152 153 4.557496 GGCATTCAAACAGAAGGACACTTC 60.557 45.833 0.00 0.00 45.28 3.01
178 179 4.434713 AAAACTGACACACAAACTGACC 57.565 40.909 0.00 0.00 0.00 4.02
179 180 2.779755 ACTGACACACAAACTGACCA 57.220 45.000 0.00 0.00 0.00 4.02
180 181 3.281727 ACTGACACACAAACTGACCAT 57.718 42.857 0.00 0.00 0.00 3.55
181 182 2.945008 ACTGACACACAAACTGACCATG 59.055 45.455 0.00 0.00 0.00 3.66
182 183 2.945008 CTGACACACAAACTGACCATGT 59.055 45.455 0.00 0.00 0.00 3.21
184 185 2.942376 GACACACAAACTGACCATGTGA 59.058 45.455 11.66 0.00 45.61 3.58
185 186 2.682856 ACACACAAACTGACCATGTGAC 59.317 45.455 11.66 0.00 45.61 3.67
186 187 2.682352 CACACAAACTGACCATGTGACA 59.318 45.455 11.66 0.00 45.61 3.58
187 188 2.945008 ACACAAACTGACCATGTGACAG 59.055 45.455 11.66 10.42 45.61 3.51
188 189 3.205338 CACAAACTGACCATGTGACAGA 58.795 45.455 16.11 0.00 45.61 3.41
189 190 3.627123 CACAAACTGACCATGTGACAGAA 59.373 43.478 16.11 0.00 45.61 3.02
190 191 3.879295 ACAAACTGACCATGTGACAGAAG 59.121 43.478 16.11 9.81 35.85 2.85
191 192 2.847327 ACTGACCATGTGACAGAAGG 57.153 50.000 16.11 0.00 35.85 3.46
192 193 1.349026 ACTGACCATGTGACAGAAGGG 59.651 52.381 16.11 0.00 35.85 3.95
193 194 0.692476 TGACCATGTGACAGAAGGGG 59.308 55.000 0.00 0.00 0.00 4.79
194 195 0.693049 GACCATGTGACAGAAGGGGT 59.307 55.000 0.00 0.00 0.00 4.95
195 196 0.401738 ACCATGTGACAGAAGGGGTG 59.598 55.000 0.00 0.00 0.00 4.61
196 197 0.322816 CCATGTGACAGAAGGGGTGG 60.323 60.000 0.00 0.00 0.00 4.61
197 198 0.692476 CATGTGACAGAAGGGGTGGA 59.308 55.000 0.00 0.00 0.00 4.02
472 473 8.369462 CAACGATCAACAATTTTAGTAGAAGC 57.631 34.615 0.00 0.00 0.00 3.86
473 474 7.667043 ACGATCAACAATTTTAGTAGAAGCA 57.333 32.000 0.00 0.00 0.00 3.91
474 475 8.094798 ACGATCAACAATTTTAGTAGAAGCAA 57.905 30.769 0.00 0.00 0.00 3.91
475 476 8.015658 ACGATCAACAATTTTAGTAGAAGCAAC 58.984 33.333 0.00 0.00 0.00 4.17
476 477 8.230486 CGATCAACAATTTTAGTAGAAGCAACT 58.770 33.333 0.00 0.00 0.00 3.16
479 480 9.555727 TCAACAATTTTAGTAGAAGCAACTAGT 57.444 29.630 0.00 0.00 31.37 2.57
514 515 8.688184 ACAAAATTCGATCAATATACGTACTCG 58.312 33.333 0.00 0.61 43.34 4.18
515 516 7.792383 AAATTCGATCAATATACGTACTCGG 57.208 36.000 0.00 0.00 41.85 4.63
516 517 4.332186 TCGATCAATATACGTACTCGGC 57.668 45.455 0.00 0.00 41.85 5.54
517 518 3.125829 TCGATCAATATACGTACTCGGCC 59.874 47.826 0.00 0.00 41.85 6.13
518 519 3.730061 CGATCAATATACGTACTCGGCCC 60.730 52.174 0.00 0.00 41.85 5.80
519 520 2.867624 TCAATATACGTACTCGGCCCT 58.132 47.619 0.00 0.00 41.85 5.19
520 521 2.816087 TCAATATACGTACTCGGCCCTC 59.184 50.000 0.00 0.00 41.85 4.30
521 522 1.831580 ATATACGTACTCGGCCCTCC 58.168 55.000 0.00 0.00 41.85 4.30
522 523 0.767375 TATACGTACTCGGCCCTCCT 59.233 55.000 0.00 0.00 41.85 3.69
523 524 0.767375 ATACGTACTCGGCCCTCCTA 59.233 55.000 0.00 0.00 41.85 2.94
524 525 0.767375 TACGTACTCGGCCCTCCTAT 59.233 55.000 0.00 0.00 41.85 2.57
525 526 0.767375 ACGTACTCGGCCCTCCTATA 59.233 55.000 0.00 0.00 41.85 1.31
526 527 1.163554 CGTACTCGGCCCTCCTATAC 58.836 60.000 0.00 0.00 0.00 1.47
527 528 1.271271 CGTACTCGGCCCTCCTATACT 60.271 57.143 0.00 0.00 0.00 2.12
528 529 2.435422 GTACTCGGCCCTCCTATACTC 58.565 57.143 0.00 0.00 0.00 2.59
529 530 0.250814 ACTCGGCCCTCCTATACTCG 60.251 60.000 0.00 0.00 0.00 4.18
530 531 0.036448 CTCGGCCCTCCTATACTCGA 59.964 60.000 0.00 0.00 0.00 4.04
531 532 0.475475 TCGGCCCTCCTATACTCGAA 59.525 55.000 0.00 0.00 0.00 3.71
532 533 1.075050 TCGGCCCTCCTATACTCGAAT 59.925 52.381 0.00 0.00 0.00 3.34
533 534 1.893801 CGGCCCTCCTATACTCGAATT 59.106 52.381 0.00 0.00 0.00 2.17
534 535 2.094649 CGGCCCTCCTATACTCGAATTC 60.095 54.545 0.00 0.00 0.00 2.17
535 536 3.166679 GGCCCTCCTATACTCGAATTCT 58.833 50.000 3.52 0.00 0.00 2.40
536 537 3.056465 GGCCCTCCTATACTCGAATTCTG 60.056 52.174 3.52 0.00 0.00 3.02
537 538 3.056465 GCCCTCCTATACTCGAATTCTGG 60.056 52.174 3.52 0.00 0.00 3.86
538 539 3.056465 CCCTCCTATACTCGAATTCTGGC 60.056 52.174 3.52 0.00 0.00 4.85
539 540 3.829601 CCTCCTATACTCGAATTCTGGCT 59.170 47.826 3.52 0.00 0.00 4.75
540 541 4.082463 CCTCCTATACTCGAATTCTGGCTC 60.082 50.000 3.52 0.00 0.00 4.70
541 542 3.827302 TCCTATACTCGAATTCTGGCTCC 59.173 47.826 3.52 0.00 0.00 4.70
542 543 2.802787 ATACTCGAATTCTGGCTCCG 57.197 50.000 3.52 0.00 0.00 4.63
543 544 0.102481 TACTCGAATTCTGGCTCCGC 59.898 55.000 3.52 0.00 0.00 5.54
565 566 3.318017 CACTGGTGGAGAAAGTAAGACG 58.682 50.000 0.00 0.00 0.00 4.18
566 567 2.963782 ACTGGTGGAGAAAGTAAGACGT 59.036 45.455 0.00 0.00 0.00 4.34
567 568 4.022589 CACTGGTGGAGAAAGTAAGACGTA 60.023 45.833 0.00 0.00 0.00 3.57
568 569 4.022503 ACTGGTGGAGAAAGTAAGACGTAC 60.023 45.833 0.00 0.00 0.00 3.67
569 570 3.890756 TGGTGGAGAAAGTAAGACGTACA 59.109 43.478 1.35 0.00 34.88 2.90
570 571 4.022589 TGGTGGAGAAAGTAAGACGTACAG 60.023 45.833 1.35 0.00 34.88 2.74
571 572 3.919197 GTGGAGAAAGTAAGACGTACAGC 59.081 47.826 1.35 0.00 34.88 4.40
572 573 3.570975 TGGAGAAAGTAAGACGTACAGCA 59.429 43.478 1.35 0.00 34.88 4.41
573 574 4.167268 GGAGAAAGTAAGACGTACAGCAG 58.833 47.826 1.35 0.00 34.88 4.24
574 575 4.167268 GAGAAAGTAAGACGTACAGCAGG 58.833 47.826 1.35 0.00 34.88 4.85
575 576 3.573110 AGAAAGTAAGACGTACAGCAGGT 59.427 43.478 1.35 0.00 34.88 4.00
576 577 4.038883 AGAAAGTAAGACGTACAGCAGGTT 59.961 41.667 1.35 0.00 34.88 3.50
577 578 5.242393 AGAAAGTAAGACGTACAGCAGGTTA 59.758 40.000 1.35 0.00 34.88 2.85
578 579 4.698583 AGTAAGACGTACAGCAGGTTAG 57.301 45.455 1.35 0.00 34.88 2.34
579 580 4.077822 AGTAAGACGTACAGCAGGTTAGT 58.922 43.478 1.35 0.00 34.88 2.24
580 581 5.248640 AGTAAGACGTACAGCAGGTTAGTA 58.751 41.667 1.35 0.00 34.88 1.82
581 582 5.707298 AGTAAGACGTACAGCAGGTTAGTAA 59.293 40.000 1.35 0.00 34.88 2.24
582 583 5.656213 AAGACGTACAGCAGGTTAGTAAT 57.344 39.130 0.00 0.00 0.00 1.89
583 584 4.995124 AGACGTACAGCAGGTTAGTAATG 58.005 43.478 0.00 0.00 0.00 1.90
584 585 4.703575 AGACGTACAGCAGGTTAGTAATGA 59.296 41.667 0.00 0.00 0.00 2.57
585 586 5.360144 AGACGTACAGCAGGTTAGTAATGAT 59.640 40.000 0.00 0.00 0.00 2.45
586 587 5.589192 ACGTACAGCAGGTTAGTAATGATC 58.411 41.667 0.00 0.00 0.00 2.92
587 588 4.982916 CGTACAGCAGGTTAGTAATGATCC 59.017 45.833 0.00 0.00 0.00 3.36
588 589 5.221263 CGTACAGCAGGTTAGTAATGATCCT 60.221 44.000 0.00 0.00 0.00 3.24
589 590 5.028549 ACAGCAGGTTAGTAATGATCCTG 57.971 43.478 11.28 11.28 45.68 3.86
590 591 4.716784 ACAGCAGGTTAGTAATGATCCTGA 59.283 41.667 17.35 0.00 45.76 3.86
591 592 5.189736 ACAGCAGGTTAGTAATGATCCTGAA 59.810 40.000 17.35 0.00 45.76 3.02
592 593 6.115446 CAGCAGGTTAGTAATGATCCTGAAA 58.885 40.000 17.35 0.00 45.76 2.69
593 594 6.769822 CAGCAGGTTAGTAATGATCCTGAAAT 59.230 38.462 17.35 3.95 45.76 2.17
594 595 7.933577 CAGCAGGTTAGTAATGATCCTGAAATA 59.066 37.037 17.35 0.00 45.76 1.40
595 596 8.494433 AGCAGGTTAGTAATGATCCTGAAATAA 58.506 33.333 17.35 0.00 45.76 1.40
596 597 9.289782 GCAGGTTAGTAATGATCCTGAAATAAT 57.710 33.333 17.35 0.00 45.76 1.28
602 603 8.092521 AGTAATGATCCTGAAATAATCAAGCG 57.907 34.615 0.00 0.00 37.67 4.68
603 604 5.954296 ATGATCCTGAAATAATCAAGCGG 57.046 39.130 0.00 0.00 37.67 5.52
604 605 3.565482 TGATCCTGAAATAATCAAGCGGC 59.435 43.478 0.00 0.00 37.67 6.53
605 606 2.997980 TCCTGAAATAATCAAGCGGCA 58.002 42.857 1.45 0.00 37.67 5.69
606 607 2.945008 TCCTGAAATAATCAAGCGGCAG 59.055 45.455 1.45 0.00 37.67 4.85
607 608 2.945008 CCTGAAATAATCAAGCGGCAGA 59.055 45.455 1.45 0.00 37.67 4.26
608 609 3.567164 CCTGAAATAATCAAGCGGCAGAT 59.433 43.478 1.45 2.14 37.67 2.90
609 610 4.320057 CCTGAAATAATCAAGCGGCAGATC 60.320 45.833 1.45 0.00 37.67 2.75
610 611 3.248363 TGAAATAATCAAGCGGCAGATCG 59.752 43.478 1.45 0.00 34.30 3.69
611 612 2.820059 ATAATCAAGCGGCAGATCGA 57.180 45.000 1.45 0.00 0.00 3.59
612 613 2.820059 TAATCAAGCGGCAGATCGAT 57.180 45.000 0.00 0.00 0.00 3.59
613 614 1.224075 AATCAAGCGGCAGATCGATG 58.776 50.000 0.54 0.00 0.00 3.84
614 615 1.226686 ATCAAGCGGCAGATCGATGC 61.227 55.000 0.54 1.58 45.74 3.91
625 626 5.896922 GCAGATCGATGCATGGTATATAC 57.103 43.478 2.46 4.14 45.77 1.47
626 627 4.747108 GCAGATCGATGCATGGTATATACC 59.253 45.833 22.97 22.97 45.77 2.73
627 628 6.520266 GCAGATCGATGCATGGTATATACCG 61.520 48.000 23.82 13.50 46.24 4.02
628 629 8.823624 GCAGATCGATGCATGGTATATACCGT 62.824 46.154 23.82 21.63 46.24 4.83
650 651 4.284378 GCATGGTAGAAAATGCACTCTC 57.716 45.455 2.89 0.00 46.75 3.20
685 686 5.562890 GCTGTAGAAATTTCCTGTGAACACC 60.563 44.000 14.61 0.00 0.00 4.16
726 733 1.537397 TGCAGCAAGTCTCTCCCCT 60.537 57.895 0.00 0.00 0.00 4.79
727 734 1.078567 GCAGCAAGTCTCTCCCCTG 60.079 63.158 0.00 0.00 0.00 4.45
799 1168 3.006940 CGGAATAGCAAAACTGCCACTA 58.993 45.455 0.00 0.00 34.90 2.74
833 1219 3.060614 ATCCATGGCCAGTTCCGGG 62.061 63.158 13.05 5.80 0.00 5.73
917 1318 3.698820 GCCTTGCTGCCTTTGGGG 61.699 66.667 0.00 0.00 38.36 4.96
942 1344 2.016704 CGCGTTTCGTCTGCTCAGT 61.017 57.895 0.00 0.00 0.00 3.41
943 1345 1.775962 GCGTTTCGTCTGCTCAGTC 59.224 57.895 0.00 0.00 0.00 3.51
984 1389 2.672651 CCACCATCGCCAGTTGCA 60.673 61.111 0.00 0.00 41.33 4.08
1056 1478 3.855853 GGCGCCTCCCTTCCTCTC 61.856 72.222 22.15 0.00 0.00 3.20
1081 1503 2.820479 CTCCTCGTCCTCGTCGCT 60.820 66.667 0.00 0.00 38.33 4.93
1150 1584 2.776526 TTGGTCCAGTGCCACCCT 60.777 61.111 6.95 0.00 35.46 4.34
1237 1779 2.607750 TCCCTCCTCGCCAAGCTT 60.608 61.111 0.00 0.00 0.00 3.74
1627 2169 3.936203 GTGGCCGTGGACTGGACA 61.936 66.667 0.00 0.00 44.08 4.02
1648 2190 4.477975 GCGGCGAGCGACTACAGT 62.478 66.667 12.98 0.00 35.41 3.55
1925 2485 1.228552 GTGCCCCTGCTGAAAAGGA 60.229 57.895 0.00 0.00 36.91 3.36
1956 2524 2.938354 GCACACTGCACAATCTCCT 58.062 52.632 0.00 0.00 44.26 3.69
1957 2525 0.801251 GCACACTGCACAATCTCCTC 59.199 55.000 0.00 0.00 44.26 3.71
1958 2526 1.446907 CACACTGCACAATCTCCTCC 58.553 55.000 0.00 0.00 0.00 4.30
1959 2527 1.002888 CACACTGCACAATCTCCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
1960 2528 1.277557 ACACTGCACAATCTCCTCCTC 59.722 52.381 0.00 0.00 0.00 3.71
1961 2529 0.908198 ACTGCACAATCTCCTCCTCC 59.092 55.000 0.00 0.00 0.00 4.30
1962 2530 1.202330 CTGCACAATCTCCTCCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
1963 2531 1.138661 CTGCACAATCTCCTCCTCCTC 59.861 57.143 0.00 0.00 0.00 3.71
1984 2552 2.387757 CTCCTCCTCCTCCTCTTCTTG 58.612 57.143 0.00 0.00 0.00 3.02
2008 2581 4.437659 GCTAAGTAGAACAGAGTCGTGGAG 60.438 50.000 0.00 0.00 0.00 3.86
2011 2584 3.502979 AGTAGAACAGAGTCGTGGAGAAC 59.497 47.826 0.00 0.00 0.00 3.01
2042 2620 0.322456 ATCACGGTGGACACAATGGG 60.322 55.000 8.50 0.00 0.00 4.00
2071 2649 2.977914 AGTTGATGAACGATCACCCTG 58.022 47.619 0.00 0.00 41.02 4.45
2077 2655 0.179134 GAACGATCACCCTGTCCTCG 60.179 60.000 0.00 0.00 35.56 4.63
2176 2754 1.227497 GAGAGCAAGATCAGGCCCG 60.227 63.158 0.00 0.00 0.00 6.13
2248 2835 2.022195 CATCTGTGCCAGGGATTCAAG 58.978 52.381 2.86 0.00 31.51 3.02
2269 2856 6.712547 TCAAGGAAGGATGTTCTTTCTTTCTC 59.287 38.462 0.00 0.00 39.78 2.87
2272 2859 6.043706 AGGAAGGATGTTCTTTCTTTCTCTCA 59.956 38.462 0.34 0.00 33.56 3.27
2316 2906 0.899019 TGCATTTGCTGGATGTGCAT 59.101 45.000 3.94 0.00 40.51 3.96
2362 2953 1.394917 CCAACGTGTTATGCTCTGCTC 59.605 52.381 0.00 0.00 0.00 4.26
2398 2989 2.488952 TGTAACTGCGTCTGAATTGCA 58.511 42.857 0.00 0.00 37.07 4.08
2449 3040 4.227134 CGGGCGGGAGTGGAGATG 62.227 72.222 0.00 0.00 0.00 2.90
2450 3041 2.764128 GGGCGGGAGTGGAGATGA 60.764 66.667 0.00 0.00 0.00 2.92
2451 3042 2.367202 GGGCGGGAGTGGAGATGAA 61.367 63.158 0.00 0.00 0.00 2.57
2452 3043 1.153349 GGCGGGAGTGGAGATGAAC 60.153 63.158 0.00 0.00 0.00 3.18
2453 3044 1.153349 GCGGGAGTGGAGATGAACC 60.153 63.158 0.00 0.00 0.00 3.62
2454 3045 1.522569 CGGGAGTGGAGATGAACCC 59.477 63.158 0.00 0.00 0.00 4.11
2455 3046 1.915983 GGGAGTGGAGATGAACCCC 59.084 63.158 0.00 0.00 0.00 4.95
2456 3047 1.636769 GGGAGTGGAGATGAACCCCC 61.637 65.000 0.00 0.00 0.00 5.40
2528 3147 2.925395 GCGATCGATCTGCACTGCG 61.925 63.158 26.34 13.69 0.00 5.18
2597 3224 2.197577 GCACTAAGCAGCAGTAGTAGC 58.802 52.381 8.14 10.06 44.79 3.58
2598 3225 2.417379 GCACTAAGCAGCAGTAGTAGCA 60.417 50.000 16.82 0.00 44.79 3.49
2599 3226 3.443037 CACTAAGCAGCAGTAGTAGCAG 58.557 50.000 8.14 0.00 0.00 4.24
2600 3227 2.159170 ACTAAGCAGCAGTAGTAGCAGC 60.159 50.000 6.94 0.00 43.76 5.25
2601 3228 0.610174 AAGCAGCAGTAGTAGCAGCA 59.390 50.000 5.41 0.00 45.53 4.41
2602 3229 0.108424 AGCAGCAGTAGTAGCAGCAC 60.108 55.000 5.41 0.00 45.53 4.40
2683 3337 7.163001 TCGTGCTTGCAGATCTCTTATATAT 57.837 36.000 0.00 0.00 0.00 0.86
2684 3338 8.281212 TCGTGCTTGCAGATCTCTTATATATA 57.719 34.615 0.00 0.00 0.00 0.86
2685 3339 8.401709 TCGTGCTTGCAGATCTCTTATATATAG 58.598 37.037 0.00 0.00 0.00 1.31
2686 3340 7.647318 CGTGCTTGCAGATCTCTTATATATAGG 59.353 40.741 0.00 0.00 0.00 2.57
2687 3341 8.690884 GTGCTTGCAGATCTCTTATATATAGGA 58.309 37.037 4.64 4.64 0.00 2.94
2688 3342 8.911965 TGCTTGCAGATCTCTTATATATAGGAG 58.088 37.037 20.60 20.60 37.70 3.69
2809 3475 7.710907 TCATGAACTAGTAATATGTGAGTTGCC 59.289 37.037 0.00 0.00 30.66 4.52
2810 3476 6.941857 TGAACTAGTAATATGTGAGTTGCCA 58.058 36.000 0.00 0.00 30.66 4.92
2811 3477 7.390823 TGAACTAGTAATATGTGAGTTGCCAA 58.609 34.615 0.00 0.00 30.66 4.52
2812 3478 7.333423 TGAACTAGTAATATGTGAGTTGCCAAC 59.667 37.037 0.00 0.00 30.66 3.77
2813 3479 6.947464 ACTAGTAATATGTGAGTTGCCAACT 58.053 36.000 10.45 10.45 46.38 3.16
2814 3480 6.818644 ACTAGTAATATGTGAGTTGCCAACTG 59.181 38.462 16.14 0.00 43.03 3.16
2815 3481 5.560724 AGTAATATGTGAGTTGCCAACTGT 58.439 37.500 16.14 0.97 43.03 3.55
2816 3482 6.003950 AGTAATATGTGAGTTGCCAACTGTT 58.996 36.000 16.14 0.00 43.03 3.16
2817 3483 5.789643 AATATGTGAGTTGCCAACTGTTT 57.210 34.783 16.14 0.00 43.03 2.83
2818 3484 6.892658 AATATGTGAGTTGCCAACTGTTTA 57.107 33.333 16.14 2.04 43.03 2.01
2849 3536 2.985896 TGGGCTCCAAAACTTATCTCG 58.014 47.619 0.00 0.00 0.00 4.04
2851 3538 1.671328 GGCTCCAAAACTTATCTCGGC 59.329 52.381 0.00 0.00 0.00 5.54
2898 3587 2.169832 ATCTCAGTTGGGTGTTGTCG 57.830 50.000 0.00 0.00 0.00 4.35
2908 3597 4.094090 TGGGTGTTGTCGTTTTGTTTAC 57.906 40.909 0.00 0.00 0.00 2.01
2909 3598 3.119566 TGGGTGTTGTCGTTTTGTTTACC 60.120 43.478 0.00 0.00 0.00 2.85
2910 3599 3.119566 GGGTGTTGTCGTTTTGTTTACCA 60.120 43.478 0.00 0.00 0.00 3.25
2911 3600 4.099824 GGTGTTGTCGTTTTGTTTACCAG 58.900 43.478 0.00 0.00 0.00 4.00
2912 3601 4.142643 GGTGTTGTCGTTTTGTTTACCAGA 60.143 41.667 0.00 0.00 0.00 3.86
2913 3602 5.449451 GGTGTTGTCGTTTTGTTTACCAGAT 60.449 40.000 0.00 0.00 0.00 2.90
2914 3603 5.454232 GTGTTGTCGTTTTGTTTACCAGATG 59.546 40.000 0.00 0.00 0.00 2.90
2915 3604 5.354513 TGTTGTCGTTTTGTTTACCAGATGA 59.645 36.000 0.00 0.00 0.00 2.92
2916 3605 6.038825 TGTTGTCGTTTTGTTTACCAGATGAT 59.961 34.615 0.00 0.00 0.00 2.45
2917 3606 7.226918 TGTTGTCGTTTTGTTTACCAGATGATA 59.773 33.333 0.00 0.00 0.00 2.15
2918 3607 7.124347 TGTCGTTTTGTTTACCAGATGATAC 57.876 36.000 0.00 0.00 0.00 2.24
2919 3608 6.148150 TGTCGTTTTGTTTACCAGATGATACC 59.852 38.462 0.00 0.00 0.00 2.73
2920 3609 5.644636 TCGTTTTGTTTACCAGATGATACCC 59.355 40.000 0.00 0.00 0.00 3.69
2921 3610 5.413213 CGTTTTGTTTACCAGATGATACCCA 59.587 40.000 0.00 0.00 0.00 4.51
2922 3611 6.617879 GTTTTGTTTACCAGATGATACCCAC 58.382 40.000 0.00 0.00 0.00 4.61
2923 3612 5.506730 TTGTTTACCAGATGATACCCACA 57.493 39.130 0.00 0.00 0.00 4.17
2924 3613 4.839121 TGTTTACCAGATGATACCCACAC 58.161 43.478 0.00 0.00 0.00 3.82
2925 3614 4.287326 TGTTTACCAGATGATACCCACACA 59.713 41.667 0.00 0.00 0.00 3.72
2926 3615 5.045213 TGTTTACCAGATGATACCCACACAT 60.045 40.000 0.00 0.00 0.00 3.21
2927 3616 5.708736 TTACCAGATGATACCCACACATT 57.291 39.130 0.00 0.00 0.00 2.71
2928 3617 3.889815 ACCAGATGATACCCACACATTG 58.110 45.455 0.00 0.00 0.00 2.82
2929 3618 3.266772 ACCAGATGATACCCACACATTGT 59.733 43.478 0.00 0.00 0.00 2.71
2930 3619 4.263905 ACCAGATGATACCCACACATTGTT 60.264 41.667 0.00 0.00 0.00 2.83
2931 3620 4.096833 CCAGATGATACCCACACATTGTTG 59.903 45.833 0.00 0.00 0.00 3.33
2932 3621 3.696051 AGATGATACCCACACATTGTTGC 59.304 43.478 0.00 0.00 0.00 4.17
2933 3622 1.809547 TGATACCCACACATTGTTGCG 59.190 47.619 0.00 0.00 0.00 4.85
2934 3623 1.132262 GATACCCACACATTGTTGCGG 59.868 52.381 0.00 0.00 0.00 5.69
2935 3624 0.891449 TACCCACACATTGTTGCGGG 60.891 55.000 11.66 11.66 36.59 6.13
2936 3625 1.900981 CCCACACATTGTTGCGGGA 60.901 57.895 8.63 0.00 33.79 5.14
2937 3626 1.459455 CCCACACATTGTTGCGGGAA 61.459 55.000 8.63 0.00 33.79 3.97
2938 3627 0.602562 CCACACATTGTTGCGGGAAT 59.397 50.000 0.00 0.00 0.00 3.01
2939 3628 1.815613 CCACACATTGTTGCGGGAATA 59.184 47.619 0.00 0.00 0.00 1.75
2940 3629 2.426738 CCACACATTGTTGCGGGAATAT 59.573 45.455 0.00 0.00 0.00 1.28
2941 3630 3.119173 CCACACATTGTTGCGGGAATATT 60.119 43.478 0.00 0.00 0.00 1.28
2942 3631 4.493547 CACACATTGTTGCGGGAATATTT 58.506 39.130 0.00 0.00 0.00 1.40
2943 3632 4.928615 CACACATTGTTGCGGGAATATTTT 59.071 37.500 0.00 0.00 0.00 1.82
2944 3633 4.928615 ACACATTGTTGCGGGAATATTTTG 59.071 37.500 0.00 0.00 0.00 2.44
2945 3634 3.932089 ACATTGTTGCGGGAATATTTTGC 59.068 39.130 0.00 0.00 0.00 3.68
2946 3635 3.667497 TTGTTGCGGGAATATTTTGCA 57.333 38.095 6.21 6.21 0.00 4.08
2947 3636 3.667497 TGTTGCGGGAATATTTTGCAA 57.333 38.095 14.93 14.93 42.68 4.08
2949 3638 3.667497 TTGCGGGAATATTTTGCAACA 57.333 38.095 14.93 0.00 40.31 3.33
2950 3639 3.883830 TGCGGGAATATTTTGCAACAT 57.116 38.095 0.00 0.00 31.69 2.71
2951 3640 4.199432 TGCGGGAATATTTTGCAACATT 57.801 36.364 2.94 1.76 31.69 2.71
2952 3641 4.573900 TGCGGGAATATTTTGCAACATTT 58.426 34.783 2.94 0.00 31.69 2.32
2953 3642 4.999950 TGCGGGAATATTTTGCAACATTTT 59.000 33.333 2.94 2.16 31.69 1.82
2954 3643 5.121454 TGCGGGAATATTTTGCAACATTTTC 59.879 36.000 16.05 16.05 31.69 2.29
2955 3644 5.121454 GCGGGAATATTTTGCAACATTTTCA 59.879 36.000 22.10 0.86 0.00 2.69
2956 3645 6.348050 GCGGGAATATTTTGCAACATTTTCAA 60.348 34.615 22.10 5.72 0.00 2.69
2957 3646 7.626028 GCGGGAATATTTTGCAACATTTTCAAT 60.626 33.333 22.10 11.51 0.00 2.57
2958 3647 7.693120 CGGGAATATTTTGCAACATTTTCAATG 59.307 33.333 22.10 12.10 0.00 2.82
2959 3648 8.728833 GGGAATATTTTGCAACATTTTCAATGA 58.271 29.630 22.10 0.00 0.00 2.57
2960 3649 9.763465 GGAATATTTTGCAACATTTTCAATGAG 57.237 29.630 22.10 0.00 0.00 2.90
2965 3654 8.434733 TTTTGCAACATTTTCAATGAGATTCA 57.565 26.923 0.00 0.00 0.00 2.57
2966 3655 7.410800 TTGCAACATTTTCAATGAGATTCAC 57.589 32.000 0.00 0.00 0.00 3.18
2967 3656 5.927689 TGCAACATTTTCAATGAGATTCACC 59.072 36.000 3.47 0.00 0.00 4.02
2968 3657 5.061311 GCAACATTTTCAATGAGATTCACCG 59.939 40.000 3.47 0.00 0.00 4.94
2969 3658 4.737054 ACATTTTCAATGAGATTCACCGC 58.263 39.130 3.47 0.00 0.00 5.68
2970 3659 4.218200 ACATTTTCAATGAGATTCACCGCA 59.782 37.500 3.47 0.00 0.00 5.69
2971 3660 5.105635 ACATTTTCAATGAGATTCACCGCAT 60.106 36.000 3.47 0.00 0.00 4.73
2972 3661 4.359971 TTTCAATGAGATTCACCGCATG 57.640 40.909 0.00 0.00 0.00 4.06
2973 3662 3.264998 TCAATGAGATTCACCGCATGA 57.735 42.857 0.00 0.00 34.65 3.07
2981 3670 1.902938 TTCACCGCATGAAACATGGA 58.097 45.000 12.56 0.48 44.59 3.41
2982 3671 2.127271 TCACCGCATGAAACATGGAT 57.873 45.000 12.56 0.00 33.02 3.41
2983 3672 3.274095 TCACCGCATGAAACATGGATA 57.726 42.857 12.56 0.00 33.02 2.59
2984 3673 3.819368 TCACCGCATGAAACATGGATAT 58.181 40.909 12.56 0.00 33.02 1.63
2985 3674 4.206375 TCACCGCATGAAACATGGATATT 58.794 39.130 12.56 0.00 33.02 1.28
2986 3675 4.644234 TCACCGCATGAAACATGGATATTT 59.356 37.500 12.56 0.00 33.02 1.40
2987 3676 5.126869 TCACCGCATGAAACATGGATATTTT 59.873 36.000 12.56 0.00 33.02 1.82
2988 3677 6.319911 TCACCGCATGAAACATGGATATTTTA 59.680 34.615 12.56 0.00 33.02 1.52
2989 3678 6.977502 CACCGCATGAAACATGGATATTTTAA 59.022 34.615 12.56 0.00 0.00 1.52
2990 3679 7.167968 CACCGCATGAAACATGGATATTTTAAG 59.832 37.037 12.56 0.00 0.00 1.85
2991 3680 7.147915 ACCGCATGAAACATGGATATTTTAAGT 60.148 33.333 12.56 0.00 0.00 2.24
2992 3681 8.349245 CCGCATGAAACATGGATATTTTAAGTA 58.651 33.333 12.56 0.00 0.00 2.24
2993 3682 9.729023 CGCATGAAACATGGATATTTTAAGTAA 57.271 29.630 12.56 0.00 0.00 2.24
3032 3721 9.691362 AAAAGCTTATTGTGTTCGATTATTGTT 57.309 25.926 0.00 0.00 0.00 2.83
3034 3723 9.988350 AAGCTTATTGTGTTCGATTATTGTTAG 57.012 29.630 0.00 0.00 0.00 2.34
3035 3724 9.162764 AGCTTATTGTGTTCGATTATTGTTAGT 57.837 29.630 0.00 0.00 0.00 2.24
3036 3725 9.769093 GCTTATTGTGTTCGATTATTGTTAGTT 57.231 29.630 0.00 0.00 0.00 2.24
3088 3777 9.878667 ACATAATGAAATGAAAATTCTCATGCA 57.121 25.926 0.00 0.00 36.16 3.96
3091 3780 8.786826 AATGAAATGAAAATTCTCATGCATGT 57.213 26.923 25.43 4.94 36.16 3.21
3092 3781 8.786826 ATGAAATGAAAATTCTCATGCATGTT 57.213 26.923 25.43 11.84 36.16 2.71
3093 3782 8.610248 TGAAATGAAAATTCTCATGCATGTTT 57.390 26.923 25.43 17.61 36.16 2.83
3094 3783 8.499967 TGAAATGAAAATTCTCATGCATGTTTG 58.500 29.630 25.43 16.44 36.16 2.93
3107 3796 3.646611 CATGTTTGCATGTTGAGGTGA 57.353 42.857 0.00 0.00 45.48 4.02
3108 3797 3.571571 CATGTTTGCATGTTGAGGTGAG 58.428 45.455 0.00 0.00 45.48 3.51
3109 3798 2.653726 TGTTTGCATGTTGAGGTGAGT 58.346 42.857 0.00 0.00 0.00 3.41
3110 3799 2.618241 TGTTTGCATGTTGAGGTGAGTC 59.382 45.455 0.00 0.00 0.00 3.36
3111 3800 2.880890 GTTTGCATGTTGAGGTGAGTCT 59.119 45.455 0.00 0.00 0.00 3.24
3112 3801 2.936919 TGCATGTTGAGGTGAGTCTT 57.063 45.000 0.00 0.00 0.00 3.01
3113 3802 3.213206 TGCATGTTGAGGTGAGTCTTT 57.787 42.857 0.00 0.00 0.00 2.52
3114 3803 4.350368 TGCATGTTGAGGTGAGTCTTTA 57.650 40.909 0.00 0.00 0.00 1.85
3115 3804 4.910195 TGCATGTTGAGGTGAGTCTTTAT 58.090 39.130 0.00 0.00 0.00 1.40
3116 3805 4.937620 TGCATGTTGAGGTGAGTCTTTATC 59.062 41.667 0.00 0.00 0.00 1.75
3117 3806 4.333926 GCATGTTGAGGTGAGTCTTTATCC 59.666 45.833 0.00 0.00 0.00 2.59
3118 3807 5.491070 CATGTTGAGGTGAGTCTTTATCCA 58.509 41.667 0.00 0.00 0.00 3.41
3119 3808 5.762179 TGTTGAGGTGAGTCTTTATCCAT 57.238 39.130 0.00 0.00 0.00 3.41
3120 3809 6.867519 TGTTGAGGTGAGTCTTTATCCATA 57.132 37.500 0.00 0.00 0.00 2.74
3121 3810 6.640518 TGTTGAGGTGAGTCTTTATCCATAC 58.359 40.000 0.00 0.00 0.00 2.39
3122 3811 6.212589 TGTTGAGGTGAGTCTTTATCCATACA 59.787 38.462 0.00 0.00 0.00 2.29
3123 3812 7.092891 TGTTGAGGTGAGTCTTTATCCATACAT 60.093 37.037 0.00 0.00 0.00 2.29
3124 3813 8.421784 GTTGAGGTGAGTCTTTATCCATACATA 58.578 37.037 0.00 0.00 0.00 2.29
3125 3814 7.952671 TGAGGTGAGTCTTTATCCATACATAC 58.047 38.462 0.00 0.00 0.00 2.39
3126 3815 7.563556 TGAGGTGAGTCTTTATCCATACATACA 59.436 37.037 0.00 0.00 0.00 2.29
3255 3952 0.109086 CTGGACTCGTTCGACTGCAT 60.109 55.000 0.00 0.00 0.00 3.96
3342 4040 4.530857 GACCACGGGCAGGATCGG 62.531 72.222 0.00 0.00 0.00 4.18
3406 4120 2.507102 CTCCAGACGCGACGCAAT 60.507 61.111 21.35 7.01 0.00 3.56
3634 4351 3.012274 TGGGATTTTCCTGGCAATTCCTA 59.988 43.478 16.07 9.92 36.57 2.94
3671 4393 1.618861 CGAACCAGAGACTAGTTGCG 58.381 55.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 9.580103 TCTATCCCAAATATTCTCCCATTCTAT 57.420 33.333 0.00 0.00 0.00 1.98
80 81 8.989045 TCTATCCCAAATATTCTCCCATTCTA 57.011 34.615 0.00 0.00 0.00 2.10
81 82 7.519004 ACTCTATCCCAAATATTCTCCCATTCT 59.481 37.037 0.00 0.00 0.00 2.40
82 83 7.694093 ACTCTATCCCAAATATTCTCCCATTC 58.306 38.462 0.00 0.00 0.00 2.67
83 84 7.654287 ACTCTATCCCAAATATTCTCCCATT 57.346 36.000 0.00 0.00 0.00 3.16
84 85 7.074237 ACAACTCTATCCCAAATATTCTCCCAT 59.926 37.037 0.00 0.00 0.00 4.00
85 86 6.389869 ACAACTCTATCCCAAATATTCTCCCA 59.610 38.462 0.00 0.00 0.00 4.37
86 87 6.842676 ACAACTCTATCCCAAATATTCTCCC 58.157 40.000 0.00 0.00 0.00 4.30
87 88 9.495572 CTTACAACTCTATCCCAAATATTCTCC 57.504 37.037 0.00 0.00 0.00 3.71
91 92 9.975218 ACAACTTACAACTCTATCCCAAATATT 57.025 29.630 0.00 0.00 0.00 1.28
94 95 9.227777 GTTACAACTTACAACTCTATCCCAAAT 57.772 33.333 0.00 0.00 0.00 2.32
95 96 8.212312 TGTTACAACTTACAACTCTATCCCAAA 58.788 33.333 0.00 0.00 0.00 3.28
96 97 7.737869 TGTTACAACTTACAACTCTATCCCAA 58.262 34.615 0.00 0.00 0.00 4.12
97 98 7.305813 TGTTACAACTTACAACTCTATCCCA 57.694 36.000 0.00 0.00 0.00 4.37
98 99 7.333672 CCTTGTTACAACTTACAACTCTATCCC 59.666 40.741 0.00 0.00 31.46 3.85
99 100 7.333672 CCCTTGTTACAACTTACAACTCTATCC 59.666 40.741 0.00 0.00 31.46 2.59
100 101 7.333672 CCCCTTGTTACAACTTACAACTCTATC 59.666 40.741 0.00 0.00 31.46 2.08
101 102 7.016858 TCCCCTTGTTACAACTTACAACTCTAT 59.983 37.037 0.00 0.00 31.46 1.98
102 103 6.327104 TCCCCTTGTTACAACTTACAACTCTA 59.673 38.462 0.00 0.00 31.46 2.43
103 104 5.131475 TCCCCTTGTTACAACTTACAACTCT 59.869 40.000 0.00 0.00 31.46 3.24
104 105 5.370679 TCCCCTTGTTACAACTTACAACTC 58.629 41.667 0.00 0.00 31.46 3.01
105 106 5.376756 TCCCCTTGTTACAACTTACAACT 57.623 39.130 0.00 0.00 31.46 3.16
106 107 5.009310 CCTTCCCCTTGTTACAACTTACAAC 59.991 44.000 0.00 0.00 31.46 3.32
107 108 5.134661 CCTTCCCCTTGTTACAACTTACAA 58.865 41.667 0.00 0.00 33.54 2.41
108 109 4.721132 CCTTCCCCTTGTTACAACTTACA 58.279 43.478 0.00 0.00 0.00 2.41
109 110 3.504906 GCCTTCCCCTTGTTACAACTTAC 59.495 47.826 0.00 0.00 0.00 2.34
110 111 3.138653 TGCCTTCCCCTTGTTACAACTTA 59.861 43.478 0.00 0.00 0.00 2.24
111 112 2.091555 TGCCTTCCCCTTGTTACAACTT 60.092 45.455 0.00 0.00 0.00 2.66
112 113 1.497286 TGCCTTCCCCTTGTTACAACT 59.503 47.619 0.00 0.00 0.00 3.16
113 114 1.989706 TGCCTTCCCCTTGTTACAAC 58.010 50.000 0.00 0.00 0.00 3.32
114 115 2.990740 ATGCCTTCCCCTTGTTACAA 57.009 45.000 0.00 0.00 0.00 2.41
115 116 2.109128 TGAATGCCTTCCCCTTGTTACA 59.891 45.455 0.00 0.00 0.00 2.41
116 117 2.802719 TGAATGCCTTCCCCTTGTTAC 58.197 47.619 0.00 0.00 0.00 2.50
117 118 3.534357 TTGAATGCCTTCCCCTTGTTA 57.466 42.857 0.00 0.00 0.00 2.41
118 119 2.368548 GTTTGAATGCCTTCCCCTTGTT 59.631 45.455 0.00 0.00 0.00 2.83
119 120 1.970640 GTTTGAATGCCTTCCCCTTGT 59.029 47.619 0.00 0.00 0.00 3.16
120 121 1.969923 TGTTTGAATGCCTTCCCCTTG 59.030 47.619 0.00 0.00 0.00 3.61
121 122 2.158325 TCTGTTTGAATGCCTTCCCCTT 60.158 45.455 0.00 0.00 0.00 3.95
122 123 1.428912 TCTGTTTGAATGCCTTCCCCT 59.571 47.619 0.00 0.00 0.00 4.79
123 124 1.923356 TCTGTTTGAATGCCTTCCCC 58.077 50.000 0.00 0.00 0.00 4.81
124 125 2.232208 CCTTCTGTTTGAATGCCTTCCC 59.768 50.000 0.00 0.00 33.71 3.97
125 126 3.057245 GTCCTTCTGTTTGAATGCCTTCC 60.057 47.826 0.00 0.00 33.71 3.46
126 127 3.569701 TGTCCTTCTGTTTGAATGCCTTC 59.430 43.478 0.00 0.00 33.71 3.46
127 128 3.319122 GTGTCCTTCTGTTTGAATGCCTT 59.681 43.478 0.00 0.00 33.71 4.35
128 129 2.887152 GTGTCCTTCTGTTTGAATGCCT 59.113 45.455 0.00 0.00 33.71 4.75
129 130 2.887152 AGTGTCCTTCTGTTTGAATGCC 59.113 45.455 0.00 0.00 33.71 4.40
130 131 4.036734 TGAAGTGTCCTTCTGTTTGAATGC 59.963 41.667 4.30 0.00 46.07 3.56
131 132 5.756195 TGAAGTGTCCTTCTGTTTGAATG 57.244 39.130 4.30 0.00 46.07 2.67
132 133 6.773976 TTTGAAGTGTCCTTCTGTTTGAAT 57.226 33.333 4.30 0.00 46.07 2.57
133 134 6.582677 TTTTGAAGTGTCCTTCTGTTTGAA 57.417 33.333 4.30 0.00 46.07 2.69
134 135 6.582677 TTTTTGAAGTGTCCTTCTGTTTGA 57.417 33.333 4.30 0.00 46.07 2.69
156 157 4.279671 TGGTCAGTTTGTGTGTCAGTTTTT 59.720 37.500 0.00 0.00 0.00 1.94
157 158 3.823873 TGGTCAGTTTGTGTGTCAGTTTT 59.176 39.130 0.00 0.00 0.00 2.43
158 159 3.417101 TGGTCAGTTTGTGTGTCAGTTT 58.583 40.909 0.00 0.00 0.00 2.66
159 160 3.066291 TGGTCAGTTTGTGTGTCAGTT 57.934 42.857 0.00 0.00 0.00 3.16
160 161 2.779755 TGGTCAGTTTGTGTGTCAGT 57.220 45.000 0.00 0.00 0.00 3.41
161 162 2.945008 ACATGGTCAGTTTGTGTGTCAG 59.055 45.455 0.00 0.00 0.00 3.51
162 163 2.682352 CACATGGTCAGTTTGTGTGTCA 59.318 45.455 0.00 0.00 36.77 3.58
163 164 2.942376 TCACATGGTCAGTTTGTGTGTC 59.058 45.455 0.00 0.00 41.14 3.67
164 165 2.682856 GTCACATGGTCAGTTTGTGTGT 59.317 45.455 0.00 0.00 41.14 3.72
165 166 2.682352 TGTCACATGGTCAGTTTGTGTG 59.318 45.455 0.00 0.00 41.14 3.82
166 167 2.945008 CTGTCACATGGTCAGTTTGTGT 59.055 45.455 0.00 0.00 41.14 3.72
167 168 3.205338 TCTGTCACATGGTCAGTTTGTG 58.795 45.455 0.00 0.00 41.60 3.33
168 169 3.558931 TCTGTCACATGGTCAGTTTGT 57.441 42.857 0.00 0.00 0.00 2.83
169 170 3.251729 CCTTCTGTCACATGGTCAGTTTG 59.748 47.826 0.00 0.00 0.00 2.93
170 171 3.480470 CCTTCTGTCACATGGTCAGTTT 58.520 45.455 0.00 0.00 0.00 2.66
171 172 2.224621 CCCTTCTGTCACATGGTCAGTT 60.225 50.000 0.00 0.00 0.00 3.16
172 173 1.349026 CCCTTCTGTCACATGGTCAGT 59.651 52.381 0.00 0.00 0.00 3.41
173 174 1.339438 CCCCTTCTGTCACATGGTCAG 60.339 57.143 0.00 2.77 0.00 3.51
174 175 0.692476 CCCCTTCTGTCACATGGTCA 59.308 55.000 0.00 0.00 0.00 4.02
175 176 0.693049 ACCCCTTCTGTCACATGGTC 59.307 55.000 0.00 0.00 0.00 4.02
176 177 0.401738 CACCCCTTCTGTCACATGGT 59.598 55.000 0.00 0.00 0.00 3.55
177 178 0.322816 CCACCCCTTCTGTCACATGG 60.323 60.000 0.00 0.00 0.00 3.66
178 179 0.692476 TCCACCCCTTCTGTCACATG 59.308 55.000 0.00 0.00 0.00 3.21
179 180 3.180449 TCCACCCCTTCTGTCACAT 57.820 52.632 0.00 0.00 0.00 3.21
180 181 4.739495 TCCACCCCTTCTGTCACA 57.261 55.556 0.00 0.00 0.00 3.58
447 448 8.015087 TGCTTCTACTAAAATTGTTGATCGTTG 58.985 33.333 0.00 0.00 0.00 4.10
448 449 8.094798 TGCTTCTACTAAAATTGTTGATCGTT 57.905 30.769 0.00 0.00 0.00 3.85
449 450 7.667043 TGCTTCTACTAAAATTGTTGATCGT 57.333 32.000 0.00 0.00 0.00 3.73
450 451 8.230486 AGTTGCTTCTACTAAAATTGTTGATCG 58.770 33.333 0.00 0.00 0.00 3.69
453 454 9.555727 ACTAGTTGCTTCTACTAAAATTGTTGA 57.444 29.630 0.00 0.00 0.00 3.18
488 489 8.688184 CGAGTACGTATATTGATCGAATTTTGT 58.312 33.333 0.00 0.00 34.56 2.83
489 490 8.154038 CCGAGTACGTATATTGATCGAATTTTG 58.846 37.037 0.00 0.00 37.88 2.44
490 491 7.148853 GCCGAGTACGTATATTGATCGAATTTT 60.149 37.037 0.00 0.00 37.88 1.82
491 492 6.307318 GCCGAGTACGTATATTGATCGAATTT 59.693 38.462 0.00 0.00 37.88 1.82
492 493 5.798934 GCCGAGTACGTATATTGATCGAATT 59.201 40.000 0.00 0.00 37.88 2.17
493 494 5.330295 GCCGAGTACGTATATTGATCGAAT 58.670 41.667 0.00 0.00 37.88 3.34
494 495 4.378770 GGCCGAGTACGTATATTGATCGAA 60.379 45.833 0.00 0.00 37.88 3.71
495 496 3.125829 GGCCGAGTACGTATATTGATCGA 59.874 47.826 0.00 0.00 37.88 3.59
496 497 3.423571 GGCCGAGTACGTATATTGATCG 58.576 50.000 0.00 2.83 37.88 3.69
497 498 3.442977 AGGGCCGAGTACGTATATTGATC 59.557 47.826 0.00 0.00 37.88 2.92
498 499 3.428532 AGGGCCGAGTACGTATATTGAT 58.571 45.455 0.00 0.00 37.88 2.57
499 500 2.816087 GAGGGCCGAGTACGTATATTGA 59.184 50.000 0.00 0.00 37.88 2.57
500 501 2.094854 GGAGGGCCGAGTACGTATATTG 60.095 54.545 0.00 0.00 37.88 1.90
501 502 2.165998 GGAGGGCCGAGTACGTATATT 58.834 52.381 0.00 0.00 37.88 1.28
502 503 1.353694 AGGAGGGCCGAGTACGTATAT 59.646 52.381 0.00 0.00 39.96 0.86
503 504 0.767375 AGGAGGGCCGAGTACGTATA 59.233 55.000 0.00 0.00 39.96 1.47
504 505 0.767375 TAGGAGGGCCGAGTACGTAT 59.233 55.000 0.00 0.00 39.96 3.06
505 506 0.767375 ATAGGAGGGCCGAGTACGTA 59.233 55.000 0.00 0.00 39.96 3.57
506 507 0.767375 TATAGGAGGGCCGAGTACGT 59.233 55.000 0.00 0.00 39.96 3.57
507 508 1.163554 GTATAGGAGGGCCGAGTACG 58.836 60.000 0.00 0.00 39.96 3.67
508 509 2.435422 GAGTATAGGAGGGCCGAGTAC 58.565 57.143 0.00 0.00 39.96 2.73
509 510 1.002888 CGAGTATAGGAGGGCCGAGTA 59.997 57.143 0.00 0.00 39.96 2.59
510 511 0.250814 CGAGTATAGGAGGGCCGAGT 60.251 60.000 0.00 0.00 39.96 4.18
511 512 0.036448 TCGAGTATAGGAGGGCCGAG 59.964 60.000 0.00 0.00 39.96 4.63
512 513 0.475475 TTCGAGTATAGGAGGGCCGA 59.525 55.000 0.00 0.00 39.96 5.54
513 514 1.546961 ATTCGAGTATAGGAGGGCCG 58.453 55.000 0.00 0.00 39.96 6.13
514 515 3.056465 CAGAATTCGAGTATAGGAGGGCC 60.056 52.174 0.00 0.00 0.00 5.80
515 516 3.056465 CCAGAATTCGAGTATAGGAGGGC 60.056 52.174 0.00 0.00 0.00 5.19
516 517 3.056465 GCCAGAATTCGAGTATAGGAGGG 60.056 52.174 0.00 0.00 0.00 4.30
517 518 3.829601 AGCCAGAATTCGAGTATAGGAGG 59.170 47.826 0.00 0.00 0.00 4.30
518 519 4.082463 GGAGCCAGAATTCGAGTATAGGAG 60.082 50.000 0.00 0.00 0.00 3.69
519 520 3.827302 GGAGCCAGAATTCGAGTATAGGA 59.173 47.826 0.00 0.00 0.00 2.94
520 521 3.366476 CGGAGCCAGAATTCGAGTATAGG 60.366 52.174 0.00 0.00 0.00 2.57
521 522 3.827625 CGGAGCCAGAATTCGAGTATAG 58.172 50.000 0.00 0.00 0.00 1.31
522 523 3.917329 CGGAGCCAGAATTCGAGTATA 57.083 47.619 0.00 0.00 0.00 1.47
523 524 2.802787 CGGAGCCAGAATTCGAGTAT 57.197 50.000 0.00 0.00 0.00 2.12
544 545 3.243771 ACGTCTTACTTTCTCCACCAGTG 60.244 47.826 0.00 0.00 0.00 3.66
545 546 2.963782 ACGTCTTACTTTCTCCACCAGT 59.036 45.455 0.00 0.00 0.00 4.00
546 547 3.662247 ACGTCTTACTTTCTCCACCAG 57.338 47.619 0.00 0.00 0.00 4.00
547 548 3.890756 TGTACGTCTTACTTTCTCCACCA 59.109 43.478 0.00 0.00 0.00 4.17
548 549 4.483311 CTGTACGTCTTACTTTCTCCACC 58.517 47.826 0.00 0.00 0.00 4.61
549 550 3.919197 GCTGTACGTCTTACTTTCTCCAC 59.081 47.826 0.00 0.00 0.00 4.02
550 551 3.570975 TGCTGTACGTCTTACTTTCTCCA 59.429 43.478 0.00 0.00 0.00 3.86
551 552 4.167268 CTGCTGTACGTCTTACTTTCTCC 58.833 47.826 0.00 0.00 0.00 3.71
552 553 4.167268 CCTGCTGTACGTCTTACTTTCTC 58.833 47.826 0.00 0.00 0.00 2.87
553 554 3.573110 ACCTGCTGTACGTCTTACTTTCT 59.427 43.478 0.00 0.00 0.00 2.52
554 555 3.910648 ACCTGCTGTACGTCTTACTTTC 58.089 45.455 0.00 0.00 0.00 2.62
555 556 4.332428 AACCTGCTGTACGTCTTACTTT 57.668 40.909 0.00 0.00 0.00 2.66
556 557 4.522022 ACTAACCTGCTGTACGTCTTACTT 59.478 41.667 0.00 0.00 0.00 2.24
557 558 4.077822 ACTAACCTGCTGTACGTCTTACT 58.922 43.478 0.00 0.00 0.00 2.24
558 559 4.431661 ACTAACCTGCTGTACGTCTTAC 57.568 45.455 0.00 0.00 0.00 2.34
559 560 6.375174 TCATTACTAACCTGCTGTACGTCTTA 59.625 38.462 0.00 0.00 0.00 2.10
560 561 5.184479 TCATTACTAACCTGCTGTACGTCTT 59.816 40.000 0.00 0.00 0.00 3.01
561 562 4.703575 TCATTACTAACCTGCTGTACGTCT 59.296 41.667 0.00 0.00 0.00 4.18
562 563 4.990257 TCATTACTAACCTGCTGTACGTC 58.010 43.478 0.00 0.00 0.00 4.34
563 564 5.451520 GGATCATTACTAACCTGCTGTACGT 60.452 44.000 0.00 0.00 0.00 3.57
564 565 4.982916 GGATCATTACTAACCTGCTGTACG 59.017 45.833 0.00 0.00 0.00 3.67
565 566 5.986135 CAGGATCATTACTAACCTGCTGTAC 59.014 44.000 0.00 0.00 40.90 2.90
566 567 5.897250 TCAGGATCATTACTAACCTGCTGTA 59.103 40.000 0.00 0.00 45.11 2.74
567 568 4.716784 TCAGGATCATTACTAACCTGCTGT 59.283 41.667 0.00 0.00 45.11 4.40
568 569 5.282055 TCAGGATCATTACTAACCTGCTG 57.718 43.478 0.00 0.00 45.11 4.41
569 570 5.957771 TTCAGGATCATTACTAACCTGCT 57.042 39.130 0.00 0.00 45.11 4.24
570 571 8.677148 TTATTTCAGGATCATTACTAACCTGC 57.323 34.615 0.00 0.00 45.11 4.85
576 577 9.208022 CGCTTGATTATTTCAGGATCATTACTA 57.792 33.333 0.00 0.00 33.37 1.82
577 578 7.173907 CCGCTTGATTATTTCAGGATCATTACT 59.826 37.037 0.00 0.00 33.37 2.24
578 579 7.301054 CCGCTTGATTATTTCAGGATCATTAC 58.699 38.462 0.00 0.00 33.37 1.89
579 580 6.072508 GCCGCTTGATTATTTCAGGATCATTA 60.073 38.462 0.00 0.00 33.37 1.90
580 581 5.278660 GCCGCTTGATTATTTCAGGATCATT 60.279 40.000 0.00 0.00 33.37 2.57
581 582 4.217118 GCCGCTTGATTATTTCAGGATCAT 59.783 41.667 0.00 0.00 33.37 2.45
582 583 3.565482 GCCGCTTGATTATTTCAGGATCA 59.435 43.478 0.00 0.00 33.37 2.92
583 584 3.565482 TGCCGCTTGATTATTTCAGGATC 59.435 43.478 0.00 0.00 33.37 3.36
584 585 3.554934 TGCCGCTTGATTATTTCAGGAT 58.445 40.909 0.00 0.00 33.37 3.24
585 586 2.945008 CTGCCGCTTGATTATTTCAGGA 59.055 45.455 0.00 0.00 33.37 3.86
586 587 2.945008 TCTGCCGCTTGATTATTTCAGG 59.055 45.455 0.00 0.00 35.27 3.86
587 588 4.610007 CGATCTGCCGCTTGATTATTTCAG 60.610 45.833 0.00 0.00 35.27 3.02
588 589 3.248363 CGATCTGCCGCTTGATTATTTCA 59.752 43.478 0.00 0.00 0.00 2.69
589 590 3.494626 TCGATCTGCCGCTTGATTATTTC 59.505 43.478 0.00 0.00 0.00 2.17
590 591 3.466836 TCGATCTGCCGCTTGATTATTT 58.533 40.909 0.00 0.00 0.00 1.40
591 592 3.111853 TCGATCTGCCGCTTGATTATT 57.888 42.857 0.00 0.00 0.00 1.40
592 593 2.820059 TCGATCTGCCGCTTGATTAT 57.180 45.000 0.00 0.00 0.00 1.28
593 594 2.407090 CATCGATCTGCCGCTTGATTA 58.593 47.619 0.00 0.00 0.00 1.75
594 595 1.224075 CATCGATCTGCCGCTTGATT 58.776 50.000 0.00 0.00 0.00 2.57
595 596 1.226686 GCATCGATCTGCCGCTTGAT 61.227 55.000 0.00 0.00 36.10 2.57
596 597 1.884464 GCATCGATCTGCCGCTTGA 60.884 57.895 0.00 0.00 36.10 3.02
597 598 1.504647 ATGCATCGATCTGCCGCTTG 61.505 55.000 8.46 0.00 41.58 4.01
598 599 1.227764 ATGCATCGATCTGCCGCTT 60.228 52.632 8.46 0.00 41.58 4.68
599 600 1.959738 CATGCATCGATCTGCCGCT 60.960 57.895 8.46 0.00 41.58 5.52
600 601 2.554775 CATGCATCGATCTGCCGC 59.445 61.111 8.46 3.27 41.58 6.53
601 602 0.319813 TACCATGCATCGATCTGCCG 60.320 55.000 8.46 0.30 41.58 5.69
602 603 2.105006 ATACCATGCATCGATCTGCC 57.895 50.000 8.46 0.00 41.58 4.85
603 604 4.747108 GGTATATACCATGCATCGATCTGC 59.253 45.833 24.46 4.01 45.73 4.26
604 605 4.978580 CGGTATATACCATGCATCGATCTG 59.021 45.833 27.58 6.49 46.80 2.90
605 606 4.645136 ACGGTATATACCATGCATCGATCT 59.355 41.667 27.58 0.00 46.80 2.75
606 607 4.740205 CACGGTATATACCATGCATCGATC 59.260 45.833 27.58 0.87 46.80 3.69
607 608 4.682787 CACGGTATATACCATGCATCGAT 58.317 43.478 27.58 0.00 46.80 3.59
608 609 4.104696 CACGGTATATACCATGCATCGA 57.895 45.455 27.58 0.00 46.80 3.59
614 615 3.937814 ACCATGCACGGTATATACCATG 58.062 45.455 27.58 24.45 46.80 3.66
615 616 5.020795 TCTACCATGCACGGTATATACCAT 58.979 41.667 27.58 13.55 46.80 3.55
616 617 4.409187 TCTACCATGCACGGTATATACCA 58.591 43.478 27.58 11.69 46.80 3.25
617 618 5.395682 TTCTACCATGCACGGTATATACC 57.604 43.478 20.39 20.39 40.74 2.73
618 619 7.623506 GCATTTTCTACCATGCACGGTATATAC 60.624 40.741 12.86 4.14 44.49 1.47
619 620 6.370442 GCATTTTCTACCATGCACGGTATATA 59.630 38.462 12.86 0.00 44.49 0.86
620 621 5.181245 GCATTTTCTACCATGCACGGTATAT 59.819 40.000 12.86 1.57 44.49 0.86
621 622 4.513692 GCATTTTCTACCATGCACGGTATA 59.486 41.667 12.86 2.00 44.49 1.47
622 623 3.315191 GCATTTTCTACCATGCACGGTAT 59.685 43.478 12.86 0.00 44.49 2.73
623 624 2.680841 GCATTTTCTACCATGCACGGTA 59.319 45.455 11.81 11.81 44.49 4.02
624 625 1.472480 GCATTTTCTACCATGCACGGT 59.528 47.619 10.40 10.40 44.49 4.83
625 626 2.193306 GCATTTTCTACCATGCACGG 57.807 50.000 0.00 0.00 44.49 4.94
629 630 3.242543 CGAGAGTGCATTTTCTACCATGC 60.243 47.826 0.00 0.00 45.20 4.06
630 631 3.935203 ACGAGAGTGCATTTTCTACCATG 59.065 43.478 0.00 0.00 46.97 3.66
631 632 4.207891 ACGAGAGTGCATTTTCTACCAT 57.792 40.909 0.00 0.00 46.97 3.55
632 633 3.678056 ACGAGAGTGCATTTTCTACCA 57.322 42.857 0.00 0.00 46.97 3.25
646 647 4.190001 TCTACAGCCAACTACTACGAGAG 58.810 47.826 0.00 0.00 0.00 3.20
647 648 4.212143 TCTACAGCCAACTACTACGAGA 57.788 45.455 0.00 0.00 0.00 4.04
648 649 4.959596 TTCTACAGCCAACTACTACGAG 57.040 45.455 0.00 0.00 0.00 4.18
649 650 5.909621 ATTTCTACAGCCAACTACTACGA 57.090 39.130 0.00 0.00 0.00 3.43
650 651 6.035758 GGAAATTTCTACAGCCAACTACTACG 59.964 42.308 17.42 0.00 0.00 3.51
685 686 6.423905 GCAGACTCTAGTAGTGATGACTCTAG 59.576 46.154 6.24 10.42 39.07 2.43
726 733 1.405105 GGCAGTGTGAAAAAGCAGACA 59.595 47.619 0.00 0.00 34.76 3.41
727 734 1.405105 TGGCAGTGTGAAAAAGCAGAC 59.595 47.619 0.00 0.00 32.68 3.51
799 1168 1.202722 TGGATGATGCATCGCAGTGAT 60.203 47.619 21.34 8.35 43.65 3.06
942 1344 3.662117 TAGCAGCGCAGGAGGAGGA 62.662 63.158 11.47 0.00 0.00 3.71
943 1345 3.150335 TAGCAGCGCAGGAGGAGG 61.150 66.667 11.47 0.00 0.00 4.30
984 1389 1.546202 TGGTGGGATGGGATGGGTT 60.546 57.895 0.00 0.00 0.00 4.11
1056 1478 2.123640 GGACGAGGAGGAGGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
1458 2000 4.649705 TGGGCGAGGAGGGGTTCA 62.650 66.667 0.00 0.00 0.00 3.18
1648 2190 2.314647 GCGCACCGTGCTGTTCTTA 61.315 57.895 20.87 0.00 42.25 2.10
1925 2485 1.079543 GTGTGCTCTGCTCACCGAT 60.080 57.895 12.05 0.00 44.12 4.18
1949 2517 1.503347 GAGGAGGAGGAGGAGGAGATT 59.497 57.143 0.00 0.00 0.00 2.40
1950 2518 1.158007 GAGGAGGAGGAGGAGGAGAT 58.842 60.000 0.00 0.00 0.00 2.75
1953 2521 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1955 2523 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1956 2524 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1957 2525 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1958 2526 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1959 2527 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1960 2528 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1961 2529 0.933700 AAGAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
1962 2530 0.930726 GAAGAGGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
1963 2531 0.933700 AGAAGAGGAGGAGGAGGAGG 59.066 60.000 0.00 0.00 0.00 4.30
1984 2552 3.427773 CCACGACTCTGTTCTACTTAGCC 60.428 52.174 0.00 0.00 0.00 3.93
2008 2581 5.327091 CACCGTGATCAGATCAAAATGTTC 58.673 41.667 15.02 0.05 41.69 3.18
2011 2584 3.940852 TCCACCGTGATCAGATCAAAATG 59.059 43.478 15.02 12.15 41.69 2.32
2042 2620 1.197721 CGTTCATCAACTTCCCTGCAC 59.802 52.381 0.00 0.00 0.00 4.57
2176 2754 1.358759 CAACTGGGGCGTTGTTGAC 59.641 57.895 8.69 0.00 42.35 3.18
2248 2835 6.234177 TGAGAGAAAGAAAGAACATCCTTCC 58.766 40.000 0.00 0.00 0.00 3.46
2316 2906 4.765813 TCAGATCATCCATCTCTTGCAA 57.234 40.909 0.00 0.00 40.20 4.08
2384 2975 0.599991 AGACGTGCAATTCAGACGCA 60.600 50.000 0.00 0.00 36.56 5.24
2387 2978 2.086054 AGGAGACGTGCAATTCAGAC 57.914 50.000 0.00 0.00 0.00 3.51
2398 2989 4.049393 GCAACTGCAAGGAGACGT 57.951 55.556 0.00 0.00 39.30 4.34
2462 3053 3.136123 CATCACCCTGGCTTGCGG 61.136 66.667 0.00 0.00 0.00 5.69
2463 3054 3.136123 CCATCACCCTGGCTTGCG 61.136 66.667 0.00 0.00 0.00 4.85
2464 3055 2.048603 GTCCATCACCCTGGCTTGC 61.049 63.158 0.00 0.00 36.16 4.01
2465 3056 0.679002 CAGTCCATCACCCTGGCTTG 60.679 60.000 0.00 0.00 36.16 4.01
2466 3057 0.842030 TCAGTCCATCACCCTGGCTT 60.842 55.000 0.00 0.00 36.16 4.35
2467 3058 0.622738 ATCAGTCCATCACCCTGGCT 60.623 55.000 0.00 0.00 36.16 4.75
2468 3059 0.465097 CATCAGTCCATCACCCTGGC 60.465 60.000 0.00 0.00 36.16 4.85
2469 3060 0.182061 CCATCAGTCCATCACCCTGG 59.818 60.000 0.00 0.00 37.66 4.45
2470 3061 0.914644 ACCATCAGTCCATCACCCTG 59.085 55.000 0.00 0.00 0.00 4.45
2471 3062 1.673767 AACCATCAGTCCATCACCCT 58.326 50.000 0.00 0.00 0.00 4.34
2472 3063 2.094675 CAAACCATCAGTCCATCACCC 58.905 52.381 0.00 0.00 0.00 4.61
2528 3147 2.555199 CTACTGGAGTATGTTGCTGCC 58.445 52.381 0.00 0.00 0.00 4.85
2591 3218 1.476891 GTACTGCTGGTGCTGCTACTA 59.523 52.381 0.00 0.00 41.07 1.82
2594 3221 1.596934 GGTACTGCTGGTGCTGCTA 59.403 57.895 0.00 0.00 41.07 3.49
2595 3222 2.348998 GGTACTGCTGGTGCTGCT 59.651 61.111 0.00 0.00 41.07 4.24
2596 3223 3.121030 CGGTACTGCTGGTGCTGC 61.121 66.667 0.00 0.00 41.07 5.25
2597 3224 1.738099 GTCGGTACTGCTGGTGCTG 60.738 63.158 0.00 0.00 42.70 4.41
2598 3225 1.878656 GAGTCGGTACTGCTGGTGCT 61.879 60.000 0.00 0.00 40.48 4.40
2599 3226 1.446272 GAGTCGGTACTGCTGGTGC 60.446 63.158 0.00 0.00 35.56 5.01
2600 3227 0.171455 GAGAGTCGGTACTGCTGGTG 59.829 60.000 0.00 0.00 35.56 4.17
2601 3228 1.306642 CGAGAGTCGGTACTGCTGGT 61.307 60.000 0.00 0.00 35.56 4.00
2602 3229 1.025113 TCGAGAGTCGGTACTGCTGG 61.025 60.000 0.00 0.00 40.88 4.85
2710 3364 4.524053 GGTGGATCGAGGATTAAAGGTTT 58.476 43.478 0.00 0.00 0.00 3.27
2812 3478 8.280515 TTGGAGCCCATAACAGTATGTAAACAG 61.281 40.741 0.00 0.00 41.00 3.16
2813 3479 6.522631 TTGGAGCCCATAACAGTATGTAAACA 60.523 38.462 0.00 0.00 41.00 2.83
2814 3480 5.883673 TTGGAGCCCATAACAGTATGTAAAC 59.116 40.000 0.00 0.00 41.00 2.01
2815 3481 6.068461 TTGGAGCCCATAACAGTATGTAAA 57.932 37.500 0.00 0.00 41.00 2.01
2816 3482 5.702065 TTGGAGCCCATAACAGTATGTAA 57.298 39.130 0.00 0.00 41.00 2.41
2817 3483 5.702065 TTTGGAGCCCATAACAGTATGTA 57.298 39.130 0.00 0.00 41.00 2.29
2818 3484 4.584638 TTTGGAGCCCATAACAGTATGT 57.415 40.909 0.00 0.00 43.17 2.29
2862 3549 9.013490 CAACTGAGATAAGTTTTTGTTGTTCAG 57.987 33.333 0.00 0.00 38.34 3.02
2870 3557 6.391227 ACACCCAACTGAGATAAGTTTTTG 57.609 37.500 0.00 0.00 38.34 2.44
2898 3587 6.207810 TGTGGGTATCATCTGGTAAACAAAAC 59.792 38.462 0.00 0.00 0.00 2.43
2908 3597 3.889815 ACAATGTGTGGGTATCATCTGG 58.110 45.455 0.00 0.00 0.00 3.86
2909 3598 4.439153 GCAACAATGTGTGGGTATCATCTG 60.439 45.833 0.00 0.00 0.00 2.90
2910 3599 3.696051 GCAACAATGTGTGGGTATCATCT 59.304 43.478 0.00 0.00 0.00 2.90
2911 3600 3.487376 CGCAACAATGTGTGGGTATCATC 60.487 47.826 0.00 0.00 32.29 2.92
2912 3601 2.423185 CGCAACAATGTGTGGGTATCAT 59.577 45.455 0.00 0.00 32.29 2.45
2913 3602 1.809547 CGCAACAATGTGTGGGTATCA 59.190 47.619 0.00 0.00 32.29 2.15
2914 3603 1.132262 CCGCAACAATGTGTGGGTATC 59.868 52.381 7.28 0.00 44.09 2.24
2915 3604 1.173043 CCGCAACAATGTGTGGGTAT 58.827 50.000 7.28 0.00 44.09 2.73
2916 3605 2.635079 CCGCAACAATGTGTGGGTA 58.365 52.632 7.28 0.00 44.09 3.69
2917 3606 3.442441 CCGCAACAATGTGTGGGT 58.558 55.556 7.28 0.00 44.09 4.51
2919 3608 0.602562 ATTCCCGCAACAATGTGTGG 59.397 50.000 7.96 7.96 46.82 4.17
2920 3609 3.781079 ATATTCCCGCAACAATGTGTG 57.219 42.857 0.00 0.00 35.21 3.82
2921 3610 4.799564 AAATATTCCCGCAACAATGTGT 57.200 36.364 0.00 0.00 35.21 3.72
2922 3611 4.201705 GCAAAATATTCCCGCAACAATGTG 60.202 41.667 0.00 0.00 36.80 3.21
2923 3612 3.932089 GCAAAATATTCCCGCAACAATGT 59.068 39.130 0.00 0.00 0.00 2.71
2924 3613 3.931468 TGCAAAATATTCCCGCAACAATG 59.069 39.130 4.44 0.00 0.00 2.82
2925 3614 4.199432 TGCAAAATATTCCCGCAACAAT 57.801 36.364 4.44 0.00 0.00 2.71
2926 3615 3.667497 TGCAAAATATTCCCGCAACAA 57.333 38.095 4.44 0.00 0.00 2.83
2927 3616 3.667497 TTGCAAAATATTCCCGCAACA 57.333 38.095 12.54 0.00 37.64 3.33
2929 3618 3.667497 TGTTGCAAAATATTCCCGCAA 57.333 38.095 0.00 12.54 40.08 4.85
2930 3619 3.883830 ATGTTGCAAAATATTCCCGCA 57.116 38.095 0.00 3.09 0.00 5.69
2931 3620 5.121454 TGAAAATGTTGCAAAATATTCCCGC 59.879 36.000 1.59 0.00 0.00 6.13
2932 3621 6.718454 TGAAAATGTTGCAAAATATTCCCG 57.282 33.333 1.59 0.00 0.00 5.14
2933 3622 8.728833 TCATTGAAAATGTTGCAAAATATTCCC 58.271 29.630 1.59 1.13 0.00 3.97
2934 3623 9.763465 CTCATTGAAAATGTTGCAAAATATTCC 57.237 29.630 1.59 1.43 0.00 3.01
2939 3628 9.058174 TGAATCTCATTGAAAATGTTGCAAAAT 57.942 25.926 0.00 0.00 0.00 1.82
2940 3629 8.336806 GTGAATCTCATTGAAAATGTTGCAAAA 58.663 29.630 0.00 0.00 0.00 2.44
2941 3630 7.041916 GGTGAATCTCATTGAAAATGTTGCAAA 60.042 33.333 0.00 0.00 0.00 3.68
2942 3631 6.424509 GGTGAATCTCATTGAAAATGTTGCAA 59.575 34.615 0.00 0.00 0.00 4.08
2943 3632 5.927689 GGTGAATCTCATTGAAAATGTTGCA 59.072 36.000 0.26 0.00 0.00 4.08
2944 3633 5.061311 CGGTGAATCTCATTGAAAATGTTGC 59.939 40.000 0.26 0.00 0.00 4.17
2945 3634 5.061311 GCGGTGAATCTCATTGAAAATGTTG 59.939 40.000 0.26 0.00 0.00 3.33
2946 3635 5.163513 GCGGTGAATCTCATTGAAAATGTT 58.836 37.500 0.26 0.00 0.00 2.71
2947 3636 4.218200 TGCGGTGAATCTCATTGAAAATGT 59.782 37.500 0.26 0.00 0.00 2.71
2948 3637 4.735985 TGCGGTGAATCTCATTGAAAATG 58.264 39.130 0.00 0.00 0.00 2.32
2949 3638 5.125900 TCATGCGGTGAATCTCATTGAAAAT 59.874 36.000 0.00 0.00 32.78 1.82
2950 3639 4.458642 TCATGCGGTGAATCTCATTGAAAA 59.541 37.500 0.00 0.00 32.78 2.29
2951 3640 4.009002 TCATGCGGTGAATCTCATTGAAA 58.991 39.130 0.00 0.00 32.78 2.69
2952 3641 3.608796 TCATGCGGTGAATCTCATTGAA 58.391 40.909 0.00 0.00 32.78 2.69
2953 3642 3.264998 TCATGCGGTGAATCTCATTGA 57.735 42.857 0.00 0.00 32.78 2.57
2954 3643 4.100529 GTTTCATGCGGTGAATCTCATTG 58.899 43.478 5.33 0.00 45.77 2.82
2955 3644 3.758023 TGTTTCATGCGGTGAATCTCATT 59.242 39.130 5.33 0.00 45.77 2.57
2956 3645 3.346315 TGTTTCATGCGGTGAATCTCAT 58.654 40.909 5.33 0.00 45.77 2.90
2957 3646 2.777094 TGTTTCATGCGGTGAATCTCA 58.223 42.857 5.33 3.90 45.77 3.27
2958 3647 3.488047 CCATGTTTCATGCGGTGAATCTC 60.488 47.826 5.33 1.84 45.77 2.75
2959 3648 2.424601 CCATGTTTCATGCGGTGAATCT 59.575 45.455 5.33 0.00 45.77 2.40
2960 3649 2.423185 TCCATGTTTCATGCGGTGAATC 59.577 45.455 5.33 5.71 45.77 2.52
2961 3650 2.445427 TCCATGTTTCATGCGGTGAAT 58.555 42.857 5.33 0.00 45.77 2.57
2962 3651 1.902938 TCCATGTTTCATGCGGTGAA 58.097 45.000 4.43 0.65 44.87 3.18
2963 3652 2.127271 ATCCATGTTTCATGCGGTGA 57.873 45.000 4.43 0.00 34.25 4.02
2964 3653 4.572985 AATATCCATGTTTCATGCGGTG 57.427 40.909 4.43 0.00 0.00 4.94
2965 3654 5.596836 AAAATATCCATGTTTCATGCGGT 57.403 34.783 4.43 0.00 0.00 5.68
2966 3655 7.202526 ACTTAAAATATCCATGTTTCATGCGG 58.797 34.615 4.43 0.00 0.00 5.69
2967 3656 9.729023 TTACTTAAAATATCCATGTTTCATGCG 57.271 29.630 4.43 0.00 0.00 4.73
3006 3695 9.691362 AACAATAATCGAACACAATAAGCTTTT 57.309 25.926 3.20 0.00 0.00 2.27
3008 3697 9.988350 CTAACAATAATCGAACACAATAAGCTT 57.012 29.630 3.48 3.48 0.00 3.74
3009 3698 9.162764 ACTAACAATAATCGAACACAATAAGCT 57.837 29.630 0.00 0.00 0.00 3.74
3010 3699 9.769093 AACTAACAATAATCGAACACAATAAGC 57.231 29.630 0.00 0.00 0.00 3.09
3062 3751 9.878667 TGCATGAGAATTTTCATTTCATTATGT 57.121 25.926 8.69 0.00 35.67 2.29
3065 3754 9.878667 ACATGCATGAGAATTTTCATTTCATTA 57.121 25.926 32.75 0.00 35.67 1.90
3066 3755 8.786826 ACATGCATGAGAATTTTCATTTCATT 57.213 26.923 32.75 0.57 35.67 2.57
3067 3756 8.786826 AACATGCATGAGAATTTTCATTTCAT 57.213 26.923 32.75 11.59 35.67 2.57
3068 3757 8.499967 CAAACATGCATGAGAATTTTCATTTCA 58.500 29.630 32.75 10.03 35.67 2.69
3069 3758 7.480542 GCAAACATGCATGAGAATTTTCATTTC 59.519 33.333 32.75 8.97 35.67 2.17
3070 3759 7.041030 TGCAAACATGCATGAGAATTTTCATTT 60.041 29.630 32.75 15.02 40.23 2.32
3071 3760 6.428465 TGCAAACATGCATGAGAATTTTCATT 59.572 30.769 32.75 9.72 40.23 2.57
3072 3761 5.935206 TGCAAACATGCATGAGAATTTTCAT 59.065 32.000 32.75 5.67 40.23 2.57
3073 3762 5.298347 TGCAAACATGCATGAGAATTTTCA 58.702 33.333 32.75 18.73 40.23 2.69
3074 3763 5.849357 TGCAAACATGCATGAGAATTTTC 57.151 34.783 32.75 16.53 40.23 2.29
3088 3777 3.225104 ACTCACCTCAACATGCAAACAT 58.775 40.909 0.00 0.00 36.79 2.71
3089 3778 2.618241 GACTCACCTCAACATGCAAACA 59.382 45.455 0.00 0.00 0.00 2.83
3090 3779 2.880890 AGACTCACCTCAACATGCAAAC 59.119 45.455 0.00 0.00 0.00 2.93
3091 3780 3.213206 AGACTCACCTCAACATGCAAA 57.787 42.857 0.00 0.00 0.00 3.68
3092 3781 2.936919 AGACTCACCTCAACATGCAA 57.063 45.000 0.00 0.00 0.00 4.08
3093 3782 2.936919 AAGACTCACCTCAACATGCA 57.063 45.000 0.00 0.00 0.00 3.96
3094 3783 4.333926 GGATAAAGACTCACCTCAACATGC 59.666 45.833 0.00 0.00 0.00 4.06
3095 3784 5.491070 TGGATAAAGACTCACCTCAACATG 58.509 41.667 0.00 0.00 0.00 3.21
3096 3785 5.762179 TGGATAAAGACTCACCTCAACAT 57.238 39.130 0.00 0.00 0.00 2.71
3097 3786 5.762179 ATGGATAAAGACTCACCTCAACA 57.238 39.130 0.00 0.00 0.00 3.33
3098 3787 6.640518 TGTATGGATAAAGACTCACCTCAAC 58.359 40.000 0.00 0.00 0.00 3.18
3099 3788 6.867519 TGTATGGATAAAGACTCACCTCAA 57.132 37.500 0.00 0.00 0.00 3.02
3100 3789 7.563556 TGTATGTATGGATAAAGACTCACCTCA 59.436 37.037 0.00 0.00 0.00 3.86
3101 3790 7.952671 TGTATGTATGGATAAAGACTCACCTC 58.047 38.462 0.00 0.00 0.00 3.85
3102 3791 7.914427 TGTATGTATGGATAAAGACTCACCT 57.086 36.000 0.00 0.00 0.00 4.00
3103 3792 7.118390 GCATGTATGTATGGATAAAGACTCACC 59.882 40.741 0.00 0.00 0.00 4.02
3104 3793 7.657354 TGCATGTATGTATGGATAAAGACTCAC 59.343 37.037 0.00 0.00 0.00 3.51
3105 3794 7.657354 GTGCATGTATGTATGGATAAAGACTCA 59.343 37.037 0.00 0.00 30.98 3.41
3106 3795 7.875041 AGTGCATGTATGTATGGATAAAGACTC 59.125 37.037 0.00 0.00 30.98 3.36
3107 3796 7.658982 CAGTGCATGTATGTATGGATAAAGACT 59.341 37.037 0.00 0.00 30.98 3.24
3108 3797 7.095060 CCAGTGCATGTATGTATGGATAAAGAC 60.095 40.741 0.00 0.00 30.98 3.01
3109 3798 6.936335 CCAGTGCATGTATGTATGGATAAAGA 59.064 38.462 0.00 0.00 30.98 2.52
3110 3799 6.348786 GCCAGTGCATGTATGTATGGATAAAG 60.349 42.308 12.96 0.00 37.47 1.85
3111 3800 5.473162 GCCAGTGCATGTATGTATGGATAAA 59.527 40.000 12.96 0.00 37.47 1.40
3112 3801 5.003160 GCCAGTGCATGTATGTATGGATAA 58.997 41.667 12.96 0.00 37.47 1.75
3113 3802 4.578871 GCCAGTGCATGTATGTATGGATA 58.421 43.478 12.96 0.00 37.47 2.59
3114 3803 3.415212 GCCAGTGCATGTATGTATGGAT 58.585 45.455 12.96 0.00 37.47 3.41
3115 3804 2.806382 CGCCAGTGCATGTATGTATGGA 60.806 50.000 12.96 0.00 37.32 3.41
3116 3805 1.532437 CGCCAGTGCATGTATGTATGG 59.468 52.381 0.00 0.00 37.32 2.74
3117 3806 1.532437 CCGCCAGTGCATGTATGTATG 59.468 52.381 0.00 0.00 37.32 2.39
3118 3807 1.416030 TCCGCCAGTGCATGTATGTAT 59.584 47.619 0.00 0.00 37.32 2.29
3119 3808 0.827368 TCCGCCAGTGCATGTATGTA 59.173 50.000 0.00 0.00 37.32 2.29
3120 3809 0.462581 CTCCGCCAGTGCATGTATGT 60.463 55.000 0.00 0.00 37.32 2.29
3121 3810 1.162181 CCTCCGCCAGTGCATGTATG 61.162 60.000 0.00 0.00 37.32 2.39
3122 3811 1.146930 CCTCCGCCAGTGCATGTAT 59.853 57.895 0.00 0.00 37.32 2.29
3123 3812 2.584064 CCTCCGCCAGTGCATGTA 59.416 61.111 0.00 0.00 37.32 2.29
3124 3813 4.415150 CCCTCCGCCAGTGCATGT 62.415 66.667 0.00 0.00 37.32 3.21
3255 3952 3.449227 CAGGCTCTGTACCGGCGA 61.449 66.667 9.30 0.00 0.00 5.54
3342 4040 2.004489 CGTAGGCGCTCGATCGAAC 61.004 63.158 19.92 14.08 0.00 3.95
3406 4120 0.960364 CGCTAGCTTTGGCCTTTGGA 60.960 55.000 13.93 0.00 39.73 3.53
3444 4158 4.373116 GCCTTGTCCTCGCGACCA 62.373 66.667 3.71 0.00 41.18 4.02
3634 4351 0.986550 CGGACCCTGGGGAATTACCT 60.987 60.000 18.88 0.00 38.96 3.08
3671 4393 3.368013 GGCAATACCTAAACAAAGTGGCC 60.368 47.826 0.00 0.00 34.51 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.