Multiple sequence alignment - TraesCS2A01G144200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G144200 | chr2A | 100.000 | 3686 | 0 | 0 | 931 | 4616 | 89118261 | 89121946 | 0.000000e+00 | 6807.0 |
1 | TraesCS2A01G144200 | chr2A | 100.000 | 475 | 0 | 0 | 1 | 475 | 89117331 | 89117805 | 0.000000e+00 | 878.0 |
2 | TraesCS2A01G144200 | chr2A | 83.221 | 149 | 18 | 5 | 85 | 231 | 53992341 | 53992198 | 3.750000e-26 | 130.0 |
3 | TraesCS2A01G144200 | chr2B | 94.954 | 2913 | 127 | 15 | 1715 | 4616 | 141987158 | 141990061 | 0.000000e+00 | 4547.0 |
4 | TraesCS2A01G144200 | chr2B | 92.397 | 947 | 42 | 12 | 931 | 1849 | 141986216 | 141987160 | 0.000000e+00 | 1323.0 |
5 | TraesCS2A01G144200 | chr2B | 93.478 | 92 | 5 | 1 | 361 | 452 | 141986011 | 141986101 | 8.060000e-28 | 135.0 |
6 | TraesCS2A01G144200 | chr2D | 95.181 | 2843 | 117 | 15 | 1282 | 4117 | 89386546 | 89389375 | 0.000000e+00 | 4473.0 |
7 | TraesCS2A01G144200 | chr2D | 95.798 | 357 | 14 | 1 | 931 | 1286 | 89386166 | 89386522 | 4.010000e-160 | 575.0 |
8 | TraesCS2A01G144200 | chr5B | 80.982 | 163 | 24 | 7 | 77 | 233 | 559535758 | 559535919 | 6.270000e-24 | 122.0 |
9 | TraesCS2A01G144200 | chr4D | 79.333 | 150 | 24 | 5 | 84 | 231 | 417930305 | 417930161 | 1.060000e-16 | 99.0 |
10 | TraesCS2A01G144200 | chr7B | 80.800 | 125 | 17 | 4 | 77 | 200 | 160471595 | 160471713 | 1.770000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G144200 | chr2A | 89117331 | 89121946 | 4615 | False | 3842.500000 | 6807 | 100.000000 | 1 | 4616 | 2 | chr2A.!!$F1 | 4615 |
1 | TraesCS2A01G144200 | chr2B | 141986011 | 141990061 | 4050 | False | 2001.666667 | 4547 | 93.609667 | 361 | 4616 | 3 | chr2B.!!$F1 | 4255 |
2 | TraesCS2A01G144200 | chr2D | 89386166 | 89389375 | 3209 | False | 2524.000000 | 4473 | 95.489500 | 931 | 4117 | 2 | chr2D.!!$F1 | 3186 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
195 | 196 | 0.036105 | AGTGGCGCTGATCATTGTGA | 60.036 | 50.000 | 7.64 | 0.0 | 0.00 | 3.58 | F |
210 | 211 | 0.246635 | TGTGAGGCTAACGAAGGAGC | 59.753 | 55.000 | 0.00 | 0.0 | 39.45 | 4.70 | F |
1322 | 1367 | 0.039618 | TGGGGGAGAATGAAACTGGC | 59.960 | 55.000 | 0.00 | 0.0 | 0.00 | 4.85 | F |
2641 | 2820 | 1.272037 | TGCACCATTGAGGATGAAGCA | 60.272 | 47.619 | 0.00 | 0.0 | 40.53 | 3.91 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1224 | 1240 | 0.318360 | AGTGCGACGAATTGACGACA | 60.318 | 50.000 | 0.00 | 0.0 | 37.99 | 4.35 | R |
2028 | 2206 | 1.975680 | ACGACCATGGTTAGTCAGGTT | 59.024 | 47.619 | 20.85 | 0.0 | 33.08 | 3.50 | R |
3234 | 3414 | 0.990374 | ATCCTTGTCTTGGAGCTGCT | 59.010 | 50.000 | 6.82 | 0.0 | 36.99 | 4.24 | R |
4523 | 4716 | 0.041238 | TGATCGACAAGGGGAGGACT | 59.959 | 55.000 | 0.00 | 0.0 | 0.00 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
62 | 63 | 3.701205 | AAATTGGCCCAAAAGCTAAGG | 57.299 | 42.857 | 0.00 | 0.00 | 36.61 | 2.69 |
63 | 64 | 2.621556 | ATTGGCCCAAAAGCTAAGGA | 57.378 | 45.000 | 0.00 | 0.00 | 36.61 | 3.36 |
64 | 65 | 2.390225 | TTGGCCCAAAAGCTAAGGAA | 57.610 | 45.000 | 0.00 | 0.00 | 0.00 | 3.36 |
65 | 66 | 1.923356 | TGGCCCAAAAGCTAAGGAAG | 58.077 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
66 | 67 | 1.427368 | TGGCCCAAAAGCTAAGGAAGA | 59.573 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
67 | 68 | 1.819288 | GGCCCAAAAGCTAAGGAAGAC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
68 | 69 | 1.819288 | GCCCAAAAGCTAAGGAAGACC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
69 | 70 | 2.084546 | CCCAAAAGCTAAGGAAGACCG | 58.915 | 52.381 | 0.00 | 0.00 | 41.83 | 4.79 |
70 | 71 | 2.084546 | CCAAAAGCTAAGGAAGACCGG | 58.915 | 52.381 | 0.00 | 0.00 | 41.83 | 5.28 |
71 | 72 | 2.552373 | CCAAAAGCTAAGGAAGACCGGT | 60.552 | 50.000 | 6.92 | 6.92 | 41.83 | 5.28 |
72 | 73 | 2.474410 | AAAGCTAAGGAAGACCGGTG | 57.526 | 50.000 | 14.63 | 0.00 | 41.83 | 4.94 |
73 | 74 | 0.036294 | AAGCTAAGGAAGACCGGTGC | 60.036 | 55.000 | 14.63 | 6.48 | 41.83 | 5.01 |
74 | 75 | 1.192146 | AGCTAAGGAAGACCGGTGCA | 61.192 | 55.000 | 14.63 | 0.00 | 41.83 | 4.57 |
75 | 76 | 0.107654 | GCTAAGGAAGACCGGTGCAT | 60.108 | 55.000 | 14.63 | 0.00 | 41.83 | 3.96 |
76 | 77 | 1.138266 | GCTAAGGAAGACCGGTGCATA | 59.862 | 52.381 | 14.63 | 0.00 | 41.83 | 3.14 |
77 | 78 | 2.419574 | GCTAAGGAAGACCGGTGCATAA | 60.420 | 50.000 | 14.63 | 0.00 | 41.83 | 1.90 |
78 | 79 | 2.871096 | AAGGAAGACCGGTGCATAAA | 57.129 | 45.000 | 14.63 | 0.00 | 41.83 | 1.40 |
79 | 80 | 2.871096 | AGGAAGACCGGTGCATAAAA | 57.129 | 45.000 | 14.63 | 0.00 | 41.83 | 1.52 |
80 | 81 | 3.149005 | AGGAAGACCGGTGCATAAAAA | 57.851 | 42.857 | 14.63 | 0.00 | 41.83 | 1.94 |
81 | 82 | 3.081804 | AGGAAGACCGGTGCATAAAAAG | 58.918 | 45.455 | 14.63 | 0.00 | 41.83 | 2.27 |
82 | 83 | 2.415491 | GGAAGACCGGTGCATAAAAAGC | 60.415 | 50.000 | 14.63 | 0.00 | 0.00 | 3.51 |
83 | 84 | 1.173913 | AGACCGGTGCATAAAAAGCC | 58.826 | 50.000 | 14.63 | 0.00 | 0.00 | 4.35 |
84 | 85 | 0.172578 | GACCGGTGCATAAAAAGCCC | 59.827 | 55.000 | 14.63 | 0.00 | 0.00 | 5.19 |
85 | 86 | 1.138671 | CCGGTGCATAAAAAGCCCG | 59.861 | 57.895 | 0.00 | 1.41 | 41.95 | 6.13 |
86 | 87 | 1.591504 | CCGGTGCATAAAAAGCCCGT | 61.592 | 55.000 | 7.26 | 0.00 | 41.26 | 5.28 |
87 | 88 | 0.242555 | CGGTGCATAAAAAGCCCGTT | 59.757 | 50.000 | 0.00 | 0.00 | 39.41 | 4.44 |
88 | 89 | 1.336424 | CGGTGCATAAAAAGCCCGTTT | 60.336 | 47.619 | 0.00 | 0.00 | 39.41 | 3.60 |
89 | 90 | 2.095161 | CGGTGCATAAAAAGCCCGTTTA | 60.095 | 45.455 | 0.00 | 0.00 | 39.41 | 2.01 |
90 | 91 | 3.612004 | CGGTGCATAAAAAGCCCGTTTAA | 60.612 | 43.478 | 0.00 | 0.00 | 39.41 | 1.52 |
91 | 92 | 4.308265 | GGTGCATAAAAAGCCCGTTTAAA | 58.692 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
92 | 93 | 4.750598 | GGTGCATAAAAAGCCCGTTTAAAA | 59.249 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
93 | 94 | 5.236695 | GGTGCATAAAAAGCCCGTTTAAAAA | 59.763 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
94 | 95 | 6.359545 | GTGCATAAAAAGCCCGTTTAAAAAG | 58.640 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
95 | 96 | 5.050023 | TGCATAAAAAGCCCGTTTAAAAAGC | 60.050 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
96 | 97 | 5.615984 | GCATAAAAAGCCCGTTTAAAAAGCC | 60.616 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
97 | 98 | 3.545366 | AAAAGCCCGTTTAAAAAGCCA | 57.455 | 38.095 | 0.00 | 0.00 | 0.00 | 4.75 |
98 | 99 | 3.545366 | AAAGCCCGTTTAAAAAGCCAA | 57.455 | 38.095 | 0.00 | 0.00 | 0.00 | 4.52 |
99 | 100 | 3.545366 | AAGCCCGTTTAAAAAGCCAAA | 57.455 | 38.095 | 0.00 | 0.00 | 0.00 | 3.28 |
100 | 101 | 3.545366 | AGCCCGTTTAAAAAGCCAAAA | 57.455 | 38.095 | 0.00 | 0.00 | 0.00 | 2.44 |
101 | 102 | 3.875125 | AGCCCGTTTAAAAAGCCAAAAA | 58.125 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
102 | 103 | 3.623960 | AGCCCGTTTAAAAAGCCAAAAAC | 59.376 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
103 | 104 | 3.623960 | GCCCGTTTAAAAAGCCAAAAACT | 59.376 | 39.130 | 0.00 | 0.00 | 31.25 | 2.66 |
104 | 105 | 4.260456 | GCCCGTTTAAAAAGCCAAAAACTC | 60.260 | 41.667 | 0.00 | 0.00 | 31.25 | 3.01 |
105 | 106 | 4.026393 | CCCGTTTAAAAAGCCAAAAACTCG | 60.026 | 41.667 | 0.00 | 0.00 | 31.25 | 4.18 |
106 | 107 | 4.563580 | CCGTTTAAAAAGCCAAAAACTCGT | 59.436 | 37.500 | 0.00 | 0.00 | 31.25 | 4.18 |
107 | 108 | 5.477136 | CGTTTAAAAAGCCAAAAACTCGTG | 58.523 | 37.500 | 0.00 | 0.00 | 31.25 | 4.35 |
108 | 109 | 5.061187 | CGTTTAAAAAGCCAAAAACTCGTGT | 59.939 | 36.000 | 0.00 | 0.00 | 31.25 | 4.49 |
109 | 110 | 6.250951 | CGTTTAAAAAGCCAAAAACTCGTGTA | 59.749 | 34.615 | 0.00 | 0.00 | 31.25 | 2.90 |
110 | 111 | 7.201333 | CGTTTAAAAAGCCAAAAACTCGTGTAA | 60.201 | 33.333 | 0.00 | 0.00 | 31.25 | 2.41 |
111 | 112 | 8.433893 | GTTTAAAAAGCCAAAAACTCGTGTAAA | 58.566 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
112 | 113 | 8.530269 | TTAAAAAGCCAAAAACTCGTGTAAAA | 57.470 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
113 | 114 | 7.422878 | AAAAAGCCAAAAACTCGTGTAAAAA | 57.577 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
139 | 140 | 2.528041 | AAATATCGAAGGGAGCGTCC | 57.472 | 50.000 | 0.00 | 0.00 | 35.23 | 4.79 |
140 | 141 | 1.410004 | AATATCGAAGGGAGCGTCCA | 58.590 | 50.000 | 0.00 | 0.00 | 38.64 | 4.02 |
141 | 142 | 0.962489 | ATATCGAAGGGAGCGTCCAG | 59.038 | 55.000 | 0.00 | 0.00 | 38.64 | 3.86 |
142 | 143 | 0.106868 | TATCGAAGGGAGCGTCCAGA | 60.107 | 55.000 | 0.00 | 0.72 | 38.64 | 3.86 |
143 | 144 | 1.388065 | ATCGAAGGGAGCGTCCAGAG | 61.388 | 60.000 | 0.00 | 0.00 | 38.64 | 3.35 |
144 | 145 | 2.185608 | GAAGGGAGCGTCCAGAGC | 59.814 | 66.667 | 6.41 | 0.00 | 38.64 | 4.09 |
145 | 146 | 3.708220 | GAAGGGAGCGTCCAGAGCG | 62.708 | 68.421 | 6.41 | 0.00 | 38.64 | 5.03 |
152 | 153 | 4.406173 | CGTCCAGAGCGCGACAGT | 62.406 | 66.667 | 12.10 | 0.00 | 0.00 | 3.55 |
153 | 154 | 2.807045 | GTCCAGAGCGCGACAGTG | 60.807 | 66.667 | 12.10 | 0.00 | 0.00 | 3.66 |
154 | 155 | 4.056125 | TCCAGAGCGCGACAGTGG | 62.056 | 66.667 | 12.10 | 10.78 | 0.00 | 4.00 |
173 | 174 | 4.681978 | GGGCGGTTGAGAGTGCGT | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 5.24 |
174 | 175 | 3.112709 | GGCGGTTGAGAGTGCGTC | 61.113 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
175 | 176 | 2.355837 | GCGGTTGAGAGTGCGTCA | 60.356 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
176 | 177 | 1.954146 | GCGGTTGAGAGTGCGTCAA | 60.954 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
177 | 178 | 1.891060 | GCGGTTGAGAGTGCGTCAAG | 61.891 | 60.000 | 0.00 | 0.00 | 34.59 | 3.02 |
178 | 179 | 0.597637 | CGGTTGAGAGTGCGTCAAGT | 60.598 | 55.000 | 0.00 | 0.00 | 34.59 | 3.16 |
179 | 180 | 0.861837 | GGTTGAGAGTGCGTCAAGTG | 59.138 | 55.000 | 0.00 | 0.00 | 34.59 | 3.16 |
180 | 181 | 0.861837 | GTTGAGAGTGCGTCAAGTGG | 59.138 | 55.000 | 0.00 | 0.00 | 34.59 | 4.00 |
181 | 182 | 0.880278 | TTGAGAGTGCGTCAAGTGGC | 60.880 | 55.000 | 0.00 | 0.00 | 30.36 | 5.01 |
188 | 189 | 3.084579 | CGTCAAGTGGCGCTGATC | 58.915 | 61.111 | 7.64 | 0.00 | 35.94 | 2.92 |
189 | 190 | 1.737735 | CGTCAAGTGGCGCTGATCA | 60.738 | 57.895 | 7.64 | 0.00 | 35.94 | 2.92 |
190 | 191 | 1.086067 | CGTCAAGTGGCGCTGATCAT | 61.086 | 55.000 | 7.64 | 0.00 | 35.94 | 2.45 |
191 | 192 | 1.089920 | GTCAAGTGGCGCTGATCATT | 58.910 | 50.000 | 7.64 | 0.00 | 0.00 | 2.57 |
192 | 193 | 1.089112 | TCAAGTGGCGCTGATCATTG | 58.911 | 50.000 | 7.64 | 4.75 | 0.00 | 2.82 |
193 | 194 | 0.806868 | CAAGTGGCGCTGATCATTGT | 59.193 | 50.000 | 7.64 | 0.00 | 0.00 | 2.71 |
194 | 195 | 0.806868 | AAGTGGCGCTGATCATTGTG | 59.193 | 50.000 | 7.64 | 0.00 | 0.00 | 3.33 |
195 | 196 | 0.036105 | AGTGGCGCTGATCATTGTGA | 60.036 | 50.000 | 7.64 | 0.00 | 0.00 | 3.58 |
196 | 197 | 0.376152 | GTGGCGCTGATCATTGTGAG | 59.624 | 55.000 | 7.64 | 0.00 | 0.00 | 3.51 |
197 | 198 | 0.745486 | TGGCGCTGATCATTGTGAGG | 60.745 | 55.000 | 7.64 | 0.00 | 0.00 | 3.86 |
198 | 199 | 1.354506 | GCGCTGATCATTGTGAGGC | 59.645 | 57.895 | 0.00 | 0.00 | 0.00 | 4.70 |
199 | 200 | 1.094073 | GCGCTGATCATTGTGAGGCT | 61.094 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
200 | 201 | 1.807755 | GCGCTGATCATTGTGAGGCTA | 60.808 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
201 | 202 | 2.554142 | CGCTGATCATTGTGAGGCTAA | 58.446 | 47.619 | 0.00 | 0.00 | 0.00 | 3.09 |
202 | 203 | 2.286294 | CGCTGATCATTGTGAGGCTAAC | 59.714 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
203 | 204 | 2.286294 | GCTGATCATTGTGAGGCTAACG | 59.714 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
204 | 205 | 3.785486 | CTGATCATTGTGAGGCTAACGA | 58.215 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
205 | 206 | 4.183865 | CTGATCATTGTGAGGCTAACGAA | 58.816 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
206 | 207 | 4.183865 | TGATCATTGTGAGGCTAACGAAG | 58.816 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
207 | 208 | 2.972625 | TCATTGTGAGGCTAACGAAGG | 58.027 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
208 | 209 | 2.565391 | TCATTGTGAGGCTAACGAAGGA | 59.435 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
209 | 210 | 2.743636 | TTGTGAGGCTAACGAAGGAG | 57.256 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
210 | 211 | 0.246635 | TGTGAGGCTAACGAAGGAGC | 59.753 | 55.000 | 0.00 | 0.00 | 39.45 | 4.70 |
211 | 212 | 0.802607 | GTGAGGCTAACGAAGGAGCG | 60.803 | 60.000 | 0.00 | 0.00 | 40.81 | 5.03 |
212 | 213 | 1.878975 | GAGGCTAACGAAGGAGCGC | 60.879 | 63.158 | 0.00 | 0.00 | 40.81 | 5.92 |
213 | 214 | 2.184579 | GGCTAACGAAGGAGCGCT | 59.815 | 61.111 | 11.27 | 11.27 | 40.81 | 5.92 |
214 | 215 | 1.448013 | GGCTAACGAAGGAGCGCTT | 60.448 | 57.895 | 13.26 | 0.00 | 40.81 | 4.68 |
215 | 216 | 1.696832 | GGCTAACGAAGGAGCGCTTG | 61.697 | 60.000 | 13.26 | 1.88 | 40.81 | 4.01 |
216 | 217 | 1.014564 | GCTAACGAAGGAGCGCTTGT | 61.015 | 55.000 | 13.26 | 2.59 | 31.31 | 3.16 |
217 | 218 | 0.992802 | CTAACGAAGGAGCGCTTGTC | 59.007 | 55.000 | 13.26 | 8.67 | 33.86 | 3.18 |
218 | 219 | 0.315886 | TAACGAAGGAGCGCTTGTCA | 59.684 | 50.000 | 13.26 | 0.00 | 33.86 | 3.58 |
219 | 220 | 0.531974 | AACGAAGGAGCGCTTGTCAA | 60.532 | 50.000 | 13.26 | 0.00 | 33.86 | 3.18 |
220 | 221 | 1.222115 | ACGAAGGAGCGCTTGTCAAC | 61.222 | 55.000 | 13.26 | 0.00 | 33.86 | 3.18 |
221 | 222 | 0.946221 | CGAAGGAGCGCTTGTCAACT | 60.946 | 55.000 | 13.26 | 0.25 | 0.00 | 3.16 |
222 | 223 | 1.668919 | CGAAGGAGCGCTTGTCAACTA | 60.669 | 52.381 | 13.26 | 0.00 | 0.00 | 2.24 |
223 | 224 | 1.996191 | GAAGGAGCGCTTGTCAACTAG | 59.004 | 52.381 | 13.26 | 0.00 | 0.00 | 2.57 |
224 | 225 | 0.969894 | AGGAGCGCTTGTCAACTAGT | 59.030 | 50.000 | 13.26 | 0.00 | 0.00 | 2.57 |
225 | 226 | 1.071605 | GGAGCGCTTGTCAACTAGTG | 58.928 | 55.000 | 13.26 | 1.54 | 33.48 | 2.74 |
227 | 228 | 2.533318 | GCGCTTGTCAACTAGTGCT | 58.467 | 52.632 | 18.50 | 0.00 | 46.41 | 4.40 |
228 | 229 | 0.868406 | GCGCTTGTCAACTAGTGCTT | 59.132 | 50.000 | 18.50 | 0.00 | 46.41 | 3.91 |
229 | 230 | 1.136224 | GCGCTTGTCAACTAGTGCTTC | 60.136 | 52.381 | 18.50 | 0.00 | 46.41 | 3.86 |
230 | 231 | 1.461127 | CGCTTGTCAACTAGTGCTTCC | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
231 | 232 | 1.461127 | GCTTGTCAACTAGTGCTTCCG | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
232 | 233 | 2.866460 | GCTTGTCAACTAGTGCTTCCGA | 60.866 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
233 | 234 | 2.433868 | TGTCAACTAGTGCTTCCGAC | 57.566 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
234 | 235 | 1.961394 | TGTCAACTAGTGCTTCCGACT | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
235 | 236 | 2.364324 | TGTCAACTAGTGCTTCCGACTT | 59.636 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
236 | 237 | 3.181469 | TGTCAACTAGTGCTTCCGACTTT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
237 | 238 | 3.429207 | GTCAACTAGTGCTTCCGACTTTC | 59.571 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
238 | 239 | 3.321111 | TCAACTAGTGCTTCCGACTTTCT | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
239 | 240 | 4.058817 | CAACTAGTGCTTCCGACTTTCTT | 58.941 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
240 | 241 | 3.915536 | ACTAGTGCTTCCGACTTTCTTC | 58.084 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
241 | 242 | 2.171341 | AGTGCTTCCGACTTTCTTCC | 57.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
242 | 243 | 1.416401 | AGTGCTTCCGACTTTCTTCCA | 59.584 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
243 | 244 | 2.039084 | AGTGCTTCCGACTTTCTTCCAT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
244 | 245 | 2.814336 | GTGCTTCCGACTTTCTTCCATT | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
245 | 246 | 3.074412 | TGCTTCCGACTTTCTTCCATTC | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
246 | 247 | 2.420372 | GCTTCCGACTTTCTTCCATTCC | 59.580 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
247 | 248 | 3.674997 | CTTCCGACTTTCTTCCATTCCA | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
248 | 249 | 4.265073 | CTTCCGACTTTCTTCCATTCCAT | 58.735 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
249 | 250 | 3.609853 | TCCGACTTTCTTCCATTCCATG | 58.390 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
250 | 251 | 3.009033 | TCCGACTTTCTTCCATTCCATGT | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
251 | 252 | 3.758554 | CCGACTTTCTTCCATTCCATGTT | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
252 | 253 | 4.218417 | CCGACTTTCTTCCATTCCATGTTT | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
253 | 254 | 5.278957 | CCGACTTTCTTCCATTCCATGTTTT | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
254 | 255 | 5.630680 | CGACTTTCTTCCATTCCATGTTTTG | 59.369 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
255 | 256 | 6.484364 | ACTTTCTTCCATTCCATGTTTTGT | 57.516 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
256 | 257 | 6.888105 | ACTTTCTTCCATTCCATGTTTTGTT | 58.112 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
257 | 258 | 7.337938 | ACTTTCTTCCATTCCATGTTTTGTTT | 58.662 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
258 | 259 | 7.828717 | ACTTTCTTCCATTCCATGTTTTGTTTT | 59.171 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
259 | 260 | 8.572855 | TTTCTTCCATTCCATGTTTTGTTTTT | 57.427 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
260 | 261 | 9.672673 | TTTCTTCCATTCCATGTTTTGTTTTTA | 57.327 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
261 | 262 | 8.885494 | TCTTCCATTCCATGTTTTGTTTTTAG | 57.115 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
262 | 263 | 8.700051 | TCTTCCATTCCATGTTTTGTTTTTAGA | 58.300 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
263 | 264 | 9.323985 | CTTCCATTCCATGTTTTGTTTTTAGAA | 57.676 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
264 | 265 | 8.655651 | TCCATTCCATGTTTTGTTTTTAGAAC | 57.344 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
265 | 266 | 7.713073 | TCCATTCCATGTTTTGTTTTTAGAACC | 59.287 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
266 | 267 | 7.714813 | CCATTCCATGTTTTGTTTTTAGAACCT | 59.285 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
267 | 268 | 8.764287 | CATTCCATGTTTTGTTTTTAGAACCTC | 58.236 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
268 | 269 | 7.654022 | TCCATGTTTTGTTTTTAGAACCTCT | 57.346 | 32.000 | 0.00 | 0.00 | 0.00 | 3.69 |
269 | 270 | 8.073467 | TCCATGTTTTGTTTTTAGAACCTCTT | 57.927 | 30.769 | 0.00 | 0.00 | 0.00 | 2.85 |
270 | 271 | 8.194769 | TCCATGTTTTGTTTTTAGAACCTCTTC | 58.805 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
271 | 272 | 7.978975 | CCATGTTTTGTTTTTAGAACCTCTTCA | 59.021 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
272 | 273 | 9.023967 | CATGTTTTGTTTTTAGAACCTCTTCAG | 57.976 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
273 | 274 | 8.117813 | TGTTTTGTTTTTAGAACCTCTTCAGT | 57.882 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
274 | 275 | 8.581578 | TGTTTTGTTTTTAGAACCTCTTCAGTT | 58.418 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
275 | 276 | 9.073368 | GTTTTGTTTTTAGAACCTCTTCAGTTC | 57.927 | 33.333 | 0.00 | 0.00 | 43.22 | 3.01 |
321 | 322 | 8.635765 | TTTTTGTGCTAGGAAGATTAGTGATT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
322 | 323 | 9.733556 | TTTTTGTGCTAGGAAGATTAGTGATTA | 57.266 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
323 | 324 | 9.905713 | TTTTGTGCTAGGAAGATTAGTGATTAT | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
324 | 325 | 8.893219 | TTGTGCTAGGAAGATTAGTGATTATG | 57.107 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
325 | 326 | 7.445121 | TGTGCTAGGAAGATTAGTGATTATGG | 58.555 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
326 | 327 | 7.290014 | TGTGCTAGGAAGATTAGTGATTATGGA | 59.710 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
327 | 328 | 7.600752 | GTGCTAGGAAGATTAGTGATTATGGAC | 59.399 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
328 | 329 | 7.100409 | GCTAGGAAGATTAGTGATTATGGACC | 58.900 | 42.308 | 0.00 | 0.00 | 0.00 | 4.46 |
329 | 330 | 6.102897 | AGGAAGATTAGTGATTATGGACCG | 57.897 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
330 | 331 | 5.839063 | AGGAAGATTAGTGATTATGGACCGA | 59.161 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
331 | 332 | 6.015010 | AGGAAGATTAGTGATTATGGACCGAG | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 4.63 |
332 | 333 | 6.015350 | GGAAGATTAGTGATTATGGACCGAGA | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 4.04 |
333 | 334 | 7.310113 | GGAAGATTAGTGATTATGGACCGAGAT | 60.310 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
334 | 335 | 8.651589 | AAGATTAGTGATTATGGACCGAGATA | 57.348 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
335 | 336 | 8.830915 | AGATTAGTGATTATGGACCGAGATAT | 57.169 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
336 | 337 | 9.261035 | AGATTAGTGATTATGGACCGAGATATT | 57.739 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
337 | 338 | 9.877178 | GATTAGTGATTATGGACCGAGATATTT | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
340 | 341 | 8.608844 | AGTGATTATGGACCGAGATATTTTTC | 57.391 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
341 | 342 | 7.661847 | AGTGATTATGGACCGAGATATTTTTCC | 59.338 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
342 | 343 | 7.661847 | GTGATTATGGACCGAGATATTTTTCCT | 59.338 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
343 | 344 | 8.876181 | TGATTATGGACCGAGATATTTTTCCTA | 58.124 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
344 | 345 | 9.152595 | GATTATGGACCGAGATATTTTTCCTAC | 57.847 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
345 | 346 | 5.286267 | TGGACCGAGATATTTTTCCTACC | 57.714 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
346 | 347 | 4.717778 | TGGACCGAGATATTTTTCCTACCA | 59.282 | 41.667 | 0.00 | 0.00 | 0.00 | 3.25 |
347 | 348 | 5.163343 | TGGACCGAGATATTTTTCCTACCAG | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
348 | 349 | 5.291905 | ACCGAGATATTTTTCCTACCAGG | 57.708 | 43.478 | 0.00 | 0.00 | 36.46 | 4.45 |
349 | 350 | 4.966805 | ACCGAGATATTTTTCCTACCAGGA | 59.033 | 41.667 | 0.00 | 0.00 | 44.10 | 3.86 |
350 | 351 | 5.070580 | ACCGAGATATTTTTCCTACCAGGAG | 59.929 | 44.000 | 0.00 | 0.00 | 46.73 | 3.69 |
351 | 352 | 5.511545 | CCGAGATATTTTTCCTACCAGGAGG | 60.512 | 48.000 | 0.00 | 0.00 | 46.73 | 4.30 |
352 | 353 | 5.309638 | GAGATATTTTTCCTACCAGGAGGC | 58.690 | 45.833 | 0.00 | 0.00 | 46.73 | 4.70 |
353 | 354 | 4.726825 | AGATATTTTTCCTACCAGGAGGCA | 59.273 | 41.667 | 0.00 | 0.00 | 46.73 | 4.75 |
354 | 355 | 3.825908 | ATTTTTCCTACCAGGAGGCAA | 57.174 | 42.857 | 0.00 | 0.00 | 46.73 | 4.52 |
355 | 356 | 2.879103 | TTTTCCTACCAGGAGGCAAG | 57.121 | 50.000 | 0.00 | 0.00 | 46.73 | 4.01 |
356 | 357 | 0.328258 | TTTCCTACCAGGAGGCAAGC | 59.672 | 55.000 | 0.00 | 0.00 | 46.73 | 4.01 |
357 | 358 | 1.899437 | TTCCTACCAGGAGGCAAGCG | 61.899 | 60.000 | 0.00 | 0.00 | 46.73 | 4.68 |
358 | 359 | 2.359169 | CCTACCAGGAGGCAAGCGA | 61.359 | 63.158 | 0.00 | 0.00 | 37.67 | 4.93 |
359 | 360 | 1.690219 | CCTACCAGGAGGCAAGCGAT | 61.690 | 60.000 | 0.00 | 0.00 | 37.67 | 4.58 |
378 | 379 | 2.207924 | AGGCCGGCCTCTAATACGG | 61.208 | 63.158 | 42.84 | 0.00 | 44.43 | 4.02 |
386 | 387 | 1.335142 | GCCTCTAATACGGACTCGCTG | 60.335 | 57.143 | 0.00 | 0.00 | 40.63 | 5.18 |
432 | 433 | 0.548510 | GGCCCAGAGCTATTGACCTT | 59.451 | 55.000 | 0.00 | 0.00 | 43.05 | 3.50 |
435 | 436 | 1.141858 | CCCAGAGCTATTGACCTTCCC | 59.858 | 57.143 | 0.00 | 0.00 | 0.00 | 3.97 |
437 | 438 | 1.141858 | CAGAGCTATTGACCTTCCCCC | 59.858 | 57.143 | 0.00 | 0.00 | 0.00 | 5.40 |
1127 | 1143 | 3.840666 | GAGGAGCAGGGTAATCATCCATA | 59.159 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
1133 | 1149 | 3.055167 | CAGGGTAATCATCCATATCCGCA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 5.69 |
1140 | 1156 | 0.537188 | ATCCATATCCGCATCCGTCC | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1164 | 1180 | 1.889530 | CTCAGTCCGGTCACCCCTTC | 61.890 | 65.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1252 | 1269 | 4.688879 | TCAATTCGTCGCACTCATAGTTTT | 59.311 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
1322 | 1367 | 0.039618 | TGGGGGAGAATGAAACTGGC | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1400 | 1445 | 4.929479 | ACATTTAGGGTTTGGTGCTATCA | 58.071 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
1408 | 1453 | 1.951209 | TTGGTGCTATCACTCCAGGA | 58.049 | 50.000 | 0.00 | 0.00 | 42.72 | 3.86 |
1411 | 1456 | 2.846206 | TGGTGCTATCACTCCAGGATTT | 59.154 | 45.455 | 0.00 | 0.00 | 42.72 | 2.17 |
1449 | 1494 | 6.463360 | TGACTTGCAGTATTGTCAGTTATCA | 58.537 | 36.000 | 0.00 | 0.00 | 34.94 | 2.15 |
1465 | 1510 | 8.615211 | GTCAGTTATCAATGAAATGTAGCATCA | 58.385 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
1481 | 1527 | 6.920210 | TGTAGCATCACAATCTCTTATTCTCG | 59.080 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
1541 | 1587 | 2.231964 | TGTTACGGTGACCATACTGACC | 59.768 | 50.000 | 1.11 | 0.00 | 0.00 | 4.02 |
1669 | 1715 | 7.285401 | CCAGTGCTATAGTTGGTGGAAATTAAT | 59.715 | 37.037 | 0.84 | 0.00 | 0.00 | 1.40 |
1690 | 1736 | 2.439409 | TGTCAACATGCTTCATCTGGG | 58.561 | 47.619 | 0.00 | 0.00 | 0.00 | 4.45 |
1783 | 1961 | 5.358298 | TGTGTACCTATCTTGATCGATCG | 57.642 | 43.478 | 20.03 | 9.36 | 0.00 | 3.69 |
1822 | 2000 | 5.118990 | GCATGAGCTACTTTGGTGAGATTA | 58.881 | 41.667 | 0.00 | 0.00 | 37.91 | 1.75 |
1823 | 2001 | 5.586243 | GCATGAGCTACTTTGGTGAGATTAA | 59.414 | 40.000 | 0.00 | 0.00 | 37.91 | 1.40 |
2028 | 2206 | 5.916318 | TCCGTTTTGAGAGGTAAACACTTA | 58.084 | 37.500 | 0.00 | 0.00 | 34.68 | 2.24 |
2047 | 2225 | 2.762535 | AACCTGACTAACCATGGTCG | 57.237 | 50.000 | 20.07 | 14.95 | 39.73 | 4.79 |
2086 | 2264 | 5.947228 | TTTTCTTCTCTTGTTCGCATCAT | 57.053 | 34.783 | 0.00 | 0.00 | 0.00 | 2.45 |
2121 | 2299 | 3.527507 | CCAGGAGGTGCTCTAGGTATA | 57.472 | 52.381 | 0.00 | 0.00 | 0.00 | 1.47 |
2463 | 2642 | 3.909776 | ATCATGCTATGGCGTCATTTG | 57.090 | 42.857 | 8.30 | 2.79 | 42.25 | 2.32 |
2468 | 2647 | 2.187707 | GCTATGGCGTCATTTGCAAAG | 58.812 | 47.619 | 18.19 | 9.78 | 34.96 | 2.77 |
2558 | 2737 | 7.313646 | AGCTTCATTTTGTCTTGATGATTGAG | 58.686 | 34.615 | 0.00 | 0.00 | 30.59 | 3.02 |
2641 | 2820 | 1.272037 | TGCACCATTGAGGATGAAGCA | 60.272 | 47.619 | 0.00 | 0.00 | 40.53 | 3.91 |
2804 | 2984 | 9.754382 | GTTTTTAGATGGTCATTATGCATCAAT | 57.246 | 29.630 | 0.19 | 0.00 | 0.00 | 2.57 |
2880 | 3060 | 8.771920 | AAGATGTCATTCTTTACGACATGTTA | 57.228 | 30.769 | 11.12 | 0.00 | 46.03 | 2.41 |
2921 | 3101 | 5.359009 | ACTCCTGGCTGAAAAATGACATATG | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2923 | 3103 | 5.357878 | TCCTGGCTGAAAAATGACATATGTC | 59.642 | 40.000 | 25.95 | 25.95 | 44.97 | 3.06 |
3041 | 3221 | 7.340487 | ACCTTTCTATTGGAGAACAATCAATCC | 59.660 | 37.037 | 0.00 | 0.00 | 46.67 | 3.01 |
3094 | 3274 | 9.575783 | CTCACTTTCTAGGTTAGACTTATGTTC | 57.424 | 37.037 | 0.00 | 0.00 | 33.84 | 3.18 |
3135 | 3315 | 5.449107 | TGTTAGAACTCTTTACGAGCACT | 57.551 | 39.130 | 0.00 | 0.00 | 43.85 | 4.40 |
3270 | 3450 | 8.680903 | AGACAAGGATGTTCAGCTTTATATTTG | 58.319 | 33.333 | 0.00 | 0.00 | 40.74 | 2.32 |
3271 | 3451 | 8.579850 | ACAAGGATGTTCAGCTTTATATTTGA | 57.420 | 30.769 | 0.00 | 0.00 | 35.91 | 2.69 |
3310 | 3492 | 6.208988 | TGTGTGACTCTAGTGAATCATACC | 57.791 | 41.667 | 0.00 | 0.00 | 38.95 | 2.73 |
3658 | 3840 | 5.402997 | TGCTTTGATTTTGATATGTGGCA | 57.597 | 34.783 | 0.00 | 0.00 | 0.00 | 4.92 |
3789 | 3971 | 2.291411 | ACATTGCAATGAAGAGGAGCCT | 60.291 | 45.455 | 38.99 | 15.02 | 39.67 | 4.58 |
3931 | 4113 | 5.243730 | TCTTCTATCTTTGCCCCTTGTTTTG | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3941 | 4123 | 4.896482 | TGCCCCTTGTTTTGTACTGTTTAT | 59.104 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3959 | 4143 | 7.067494 | ACTGTTTATCAATTGGCTCCTAATGAC | 59.933 | 37.037 | 5.42 | 0.00 | 0.00 | 3.06 |
3975 | 4159 | 7.338710 | TCCTAATGACCACTAAATTTCAGAGG | 58.661 | 38.462 | 0.00 | 2.24 | 0.00 | 3.69 |
3989 | 4173 | 0.379669 | CAGAGGCATCGGCAATGTTC | 59.620 | 55.000 | 0.00 | 0.44 | 43.71 | 3.18 |
4022 | 4206 | 9.467258 | GATGCATCTAAATTGCTGCTAAATTTA | 57.533 | 29.630 | 19.70 | 13.78 | 40.77 | 1.40 |
4024 | 4208 | 9.820725 | TGCATCTAAATTGCTGCTAAATTTAAT | 57.179 | 25.926 | 14.78 | 10.40 | 38.40 | 1.40 |
4035 | 4219 | 9.539825 | TGCTGCTAAATTTAATTTTTCAGTTCA | 57.460 | 25.926 | 21.07 | 14.18 | 35.11 | 3.18 |
4151 | 4343 | 4.671377 | TGTTTTCTTGTCTTGTGATGTGC | 58.329 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
4152 | 4344 | 3.607422 | TTTCTTGTCTTGTGATGTGCG | 57.393 | 42.857 | 0.00 | 0.00 | 0.00 | 5.34 |
4164 | 4356 | 6.816140 | TCTTGTGATGTGCGTATCTTATTTGA | 59.184 | 34.615 | 2.29 | 0.00 | 0.00 | 2.69 |
4206 | 4398 | 6.704289 | AGTTATATGCATGCTGTGTTGATT | 57.296 | 33.333 | 20.33 | 0.00 | 0.00 | 2.57 |
4212 | 4404 | 2.096614 | GCATGCTGTGTTGATTTTGTGC | 60.097 | 45.455 | 11.37 | 0.00 | 0.00 | 4.57 |
4221 | 4413 | 7.405469 | TGTGTTGATTTTGTGCACATTTATC | 57.595 | 32.000 | 22.39 | 21.29 | 35.48 | 1.75 |
4268 | 4460 | 6.486248 | TCAAGCGTGCTAATTATGCTTTTAG | 58.514 | 36.000 | 3.83 | 0.00 | 45.40 | 1.85 |
4277 | 4469 | 7.768582 | TGCTAATTATGCTTTTAGTGCACTAGA | 59.231 | 33.333 | 24.79 | 19.01 | 43.59 | 2.43 |
4297 | 4489 | 4.910195 | AGAACACCTCAGCAACATGATTA | 58.090 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
4301 | 4493 | 5.957798 | ACACCTCAGCAACATGATTAATTG | 58.042 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4332 | 4525 | 8.626526 | TCTTTCTTACACAAAACTAAATCCCAC | 58.373 | 33.333 | 0.00 | 0.00 | 0.00 | 4.61 |
4359 | 4552 | 5.459505 | ACTACCTCTGACCAATAGCAGTAT | 58.540 | 41.667 | 0.00 | 0.00 | 33.90 | 2.12 |
4448 | 4641 | 3.635191 | TGCTCCACCGCCATGTCA | 61.635 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
4468 | 4661 | 4.796231 | GAGCGCGTCCGTCACCAT | 62.796 | 66.667 | 8.43 | 0.00 | 36.67 | 3.55 |
4534 | 4727 | 2.685380 | CAGCGGAGTCCTCCCCTT | 60.685 | 66.667 | 7.77 | 0.00 | 46.96 | 3.95 |
4540 | 4733 | 0.688087 | GGAGTCCTCCCCTTGTCGAT | 60.688 | 60.000 | 0.41 | 0.00 | 43.94 | 3.59 |
4546 | 4739 | 1.306141 | TCCCCTTGTCGATCAGCCT | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 4.58 |
4555 | 4748 | 2.279120 | GATCAGCCTCACGCCGAG | 60.279 | 66.667 | 0.00 | 0.00 | 41.89 | 4.63 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 1.337821 | TTGCGCGAAAAACACGTTTT | 58.662 | 40.000 | 12.10 | 2.06 | 43.88 | 2.43 |
5 | 6 | 1.337821 | TTTGCGCGAAAAACACGTTT | 58.662 | 40.000 | 10.54 | 0.00 | 0.00 | 3.60 |
6 | 7 | 1.337821 | TTTTGCGCGAAAAACACGTT | 58.662 | 40.000 | 20.99 | 0.00 | 30.25 | 3.99 |
7 | 8 | 1.337821 | TTTTTGCGCGAAAAACACGT | 58.662 | 40.000 | 28.86 | 0.00 | 38.38 | 4.49 |
40 | 41 | 4.103943 | TCCTTAGCTTTTGGGCCAATTTTT | 59.896 | 37.500 | 21.65 | 9.26 | 0.00 | 1.94 |
41 | 42 | 3.650461 | TCCTTAGCTTTTGGGCCAATTTT | 59.350 | 39.130 | 21.65 | 8.90 | 0.00 | 1.82 |
42 | 43 | 3.247162 | TCCTTAGCTTTTGGGCCAATTT | 58.753 | 40.909 | 21.65 | 8.54 | 0.00 | 1.82 |
43 | 44 | 2.901291 | TCCTTAGCTTTTGGGCCAATT | 58.099 | 42.857 | 21.65 | 8.90 | 0.00 | 2.32 |
44 | 45 | 2.621556 | TCCTTAGCTTTTGGGCCAAT | 57.378 | 45.000 | 21.65 | 7.64 | 0.00 | 3.16 |
45 | 46 | 2.158385 | TCTTCCTTAGCTTTTGGGCCAA | 60.158 | 45.455 | 16.66 | 16.66 | 0.00 | 4.52 |
46 | 47 | 1.427368 | TCTTCCTTAGCTTTTGGGCCA | 59.573 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
47 | 48 | 1.819288 | GTCTTCCTTAGCTTTTGGGCC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
48 | 49 | 1.819288 | GGTCTTCCTTAGCTTTTGGGC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
49 | 50 | 2.084546 | CGGTCTTCCTTAGCTTTTGGG | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
50 | 51 | 2.084546 | CCGGTCTTCCTTAGCTTTTGG | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
51 | 52 | 2.484264 | CACCGGTCTTCCTTAGCTTTTG | 59.516 | 50.000 | 2.59 | 0.00 | 0.00 | 2.44 |
52 | 53 | 2.779506 | CACCGGTCTTCCTTAGCTTTT | 58.220 | 47.619 | 2.59 | 0.00 | 0.00 | 2.27 |
53 | 54 | 1.610886 | GCACCGGTCTTCCTTAGCTTT | 60.611 | 52.381 | 2.59 | 0.00 | 0.00 | 3.51 |
54 | 55 | 0.036294 | GCACCGGTCTTCCTTAGCTT | 60.036 | 55.000 | 2.59 | 0.00 | 0.00 | 3.74 |
55 | 56 | 1.192146 | TGCACCGGTCTTCCTTAGCT | 61.192 | 55.000 | 2.59 | 0.00 | 0.00 | 3.32 |
56 | 57 | 0.107654 | ATGCACCGGTCTTCCTTAGC | 60.108 | 55.000 | 2.59 | 2.55 | 0.00 | 3.09 |
57 | 58 | 3.536956 | TTATGCACCGGTCTTCCTTAG | 57.463 | 47.619 | 2.59 | 0.00 | 0.00 | 2.18 |
58 | 59 | 3.985019 | TTTATGCACCGGTCTTCCTTA | 57.015 | 42.857 | 2.59 | 0.00 | 0.00 | 2.69 |
59 | 60 | 2.871096 | TTTATGCACCGGTCTTCCTT | 57.129 | 45.000 | 2.59 | 0.00 | 0.00 | 3.36 |
60 | 61 | 2.871096 | TTTTATGCACCGGTCTTCCT | 57.129 | 45.000 | 2.59 | 0.00 | 0.00 | 3.36 |
61 | 62 | 2.415491 | GCTTTTTATGCACCGGTCTTCC | 60.415 | 50.000 | 2.59 | 0.00 | 0.00 | 3.46 |
62 | 63 | 2.415491 | GGCTTTTTATGCACCGGTCTTC | 60.415 | 50.000 | 2.59 | 0.00 | 0.00 | 2.87 |
63 | 64 | 1.544246 | GGCTTTTTATGCACCGGTCTT | 59.456 | 47.619 | 2.59 | 0.68 | 0.00 | 3.01 |
64 | 65 | 1.173913 | GGCTTTTTATGCACCGGTCT | 58.826 | 50.000 | 2.59 | 0.00 | 0.00 | 3.85 |
65 | 66 | 0.172578 | GGGCTTTTTATGCACCGGTC | 59.827 | 55.000 | 2.59 | 0.00 | 0.00 | 4.79 |
66 | 67 | 1.591504 | CGGGCTTTTTATGCACCGGT | 61.592 | 55.000 | 0.00 | 0.00 | 39.11 | 5.28 |
67 | 68 | 1.138671 | CGGGCTTTTTATGCACCGG | 59.861 | 57.895 | 0.00 | 0.00 | 39.11 | 5.28 |
68 | 69 | 0.242555 | AACGGGCTTTTTATGCACCG | 59.757 | 50.000 | 6.58 | 6.58 | 44.09 | 4.94 |
69 | 70 | 2.448926 | AAACGGGCTTTTTATGCACC | 57.551 | 45.000 | 0.00 | 0.00 | 0.00 | 5.01 |
70 | 71 | 5.908916 | TTTTAAACGGGCTTTTTATGCAC | 57.091 | 34.783 | 0.00 | 0.00 | 0.00 | 4.57 |
71 | 72 | 5.050023 | GCTTTTTAAACGGGCTTTTTATGCA | 60.050 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
72 | 73 | 5.379003 | GCTTTTTAAACGGGCTTTTTATGC | 58.621 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
73 | 74 | 5.467063 | TGGCTTTTTAAACGGGCTTTTTATG | 59.533 | 36.000 | 12.19 | 0.00 | 0.00 | 1.90 |
74 | 75 | 5.612351 | TGGCTTTTTAAACGGGCTTTTTAT | 58.388 | 33.333 | 12.19 | 0.00 | 0.00 | 1.40 |
75 | 76 | 5.019785 | TGGCTTTTTAAACGGGCTTTTTA | 57.980 | 34.783 | 12.19 | 0.00 | 0.00 | 1.52 |
76 | 77 | 3.875125 | TGGCTTTTTAAACGGGCTTTTT | 58.125 | 36.364 | 12.19 | 0.00 | 0.00 | 1.94 |
77 | 78 | 3.545366 | TGGCTTTTTAAACGGGCTTTT | 57.455 | 38.095 | 12.19 | 0.00 | 0.00 | 2.27 |
78 | 79 | 3.545366 | TTGGCTTTTTAAACGGGCTTT | 57.455 | 38.095 | 12.19 | 0.00 | 0.00 | 3.51 |
79 | 80 | 3.545366 | TTTGGCTTTTTAAACGGGCTT | 57.455 | 38.095 | 12.19 | 0.00 | 0.00 | 4.35 |
80 | 81 | 3.545366 | TTTTGGCTTTTTAAACGGGCT | 57.455 | 38.095 | 12.19 | 0.00 | 0.00 | 5.19 |
81 | 82 | 3.623960 | AGTTTTTGGCTTTTTAAACGGGC | 59.376 | 39.130 | 6.30 | 6.30 | 36.03 | 6.13 |
82 | 83 | 4.026393 | CGAGTTTTTGGCTTTTTAAACGGG | 60.026 | 41.667 | 0.00 | 0.00 | 36.03 | 5.28 |
83 | 84 | 4.563580 | ACGAGTTTTTGGCTTTTTAAACGG | 59.436 | 37.500 | 0.00 | 0.00 | 36.03 | 4.44 |
84 | 85 | 5.061187 | ACACGAGTTTTTGGCTTTTTAAACG | 59.939 | 36.000 | 0.00 | 0.00 | 36.03 | 3.60 |
85 | 86 | 6.397831 | ACACGAGTTTTTGGCTTTTTAAAC | 57.602 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
86 | 87 | 8.530269 | TTTACACGAGTTTTTGGCTTTTTAAA | 57.470 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
87 | 88 | 8.530269 | TTTTACACGAGTTTTTGGCTTTTTAA | 57.470 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
88 | 89 | 8.530269 | TTTTTACACGAGTTTTTGGCTTTTTA | 57.470 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
89 | 90 | 7.422878 | TTTTTACACGAGTTTTTGGCTTTTT | 57.577 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
118 | 119 | 3.203716 | GGACGCTCCCTTCGATATTTTT | 58.796 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
119 | 120 | 2.169769 | TGGACGCTCCCTTCGATATTTT | 59.830 | 45.455 | 0.00 | 0.00 | 35.03 | 1.82 |
120 | 121 | 1.760613 | TGGACGCTCCCTTCGATATTT | 59.239 | 47.619 | 0.00 | 0.00 | 35.03 | 1.40 |
121 | 122 | 1.341531 | CTGGACGCTCCCTTCGATATT | 59.658 | 52.381 | 0.00 | 0.00 | 35.03 | 1.28 |
122 | 123 | 0.962489 | CTGGACGCTCCCTTCGATAT | 59.038 | 55.000 | 0.00 | 0.00 | 35.03 | 1.63 |
123 | 124 | 0.106868 | TCTGGACGCTCCCTTCGATA | 60.107 | 55.000 | 0.00 | 0.00 | 35.03 | 2.92 |
124 | 125 | 1.379977 | TCTGGACGCTCCCTTCGAT | 60.380 | 57.895 | 0.00 | 0.00 | 35.03 | 3.59 |
125 | 126 | 2.035155 | TCTGGACGCTCCCTTCGA | 59.965 | 61.111 | 2.23 | 0.00 | 35.03 | 3.71 |
126 | 127 | 2.492090 | CTCTGGACGCTCCCTTCG | 59.508 | 66.667 | 2.23 | 0.00 | 35.03 | 3.79 |
127 | 128 | 2.185608 | GCTCTGGACGCTCCCTTC | 59.814 | 66.667 | 2.23 | 0.00 | 35.03 | 3.46 |
128 | 129 | 3.764466 | CGCTCTGGACGCTCCCTT | 61.764 | 66.667 | 2.23 | 0.00 | 35.03 | 3.95 |
135 | 136 | 4.406173 | ACTGTCGCGCTCTGGACG | 62.406 | 66.667 | 5.56 | 4.84 | 35.95 | 4.79 |
136 | 137 | 2.807045 | CACTGTCGCGCTCTGGAC | 60.807 | 66.667 | 5.56 | 5.97 | 0.00 | 4.02 |
137 | 138 | 4.056125 | CCACTGTCGCGCTCTGGA | 62.056 | 66.667 | 5.56 | 0.00 | 0.00 | 3.86 |
156 | 157 | 4.681978 | ACGCACTCTCAACCGCCC | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
157 | 158 | 3.112709 | GACGCACTCTCAACCGCC | 61.113 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
158 | 159 | 1.891060 | CTTGACGCACTCTCAACCGC | 61.891 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
159 | 160 | 0.597637 | ACTTGACGCACTCTCAACCG | 60.598 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
160 | 161 | 0.861837 | CACTTGACGCACTCTCAACC | 59.138 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
161 | 162 | 0.861837 | CCACTTGACGCACTCTCAAC | 59.138 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
162 | 163 | 0.880278 | GCCACTTGACGCACTCTCAA | 60.880 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
163 | 164 | 1.300931 | GCCACTTGACGCACTCTCA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 3.27 |
164 | 165 | 2.375766 | CGCCACTTGACGCACTCTC | 61.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.20 |
165 | 166 | 2.356313 | CGCCACTTGACGCACTCT | 60.356 | 61.111 | 0.00 | 0.00 | 0.00 | 3.24 |
171 | 172 | 1.086067 | ATGATCAGCGCCACTTGACG | 61.086 | 55.000 | 2.29 | 0.00 | 0.00 | 4.35 |
172 | 173 | 1.089920 | AATGATCAGCGCCACTTGAC | 58.910 | 50.000 | 2.29 | 0.00 | 0.00 | 3.18 |
173 | 174 | 1.089112 | CAATGATCAGCGCCACTTGA | 58.911 | 50.000 | 2.29 | 0.40 | 0.00 | 3.02 |
174 | 175 | 0.806868 | ACAATGATCAGCGCCACTTG | 59.193 | 50.000 | 2.29 | 1.38 | 0.00 | 3.16 |
175 | 176 | 0.806868 | CACAATGATCAGCGCCACTT | 59.193 | 50.000 | 2.29 | 0.00 | 0.00 | 3.16 |
176 | 177 | 0.036105 | TCACAATGATCAGCGCCACT | 60.036 | 50.000 | 2.29 | 0.00 | 0.00 | 4.00 |
177 | 178 | 0.376152 | CTCACAATGATCAGCGCCAC | 59.624 | 55.000 | 2.29 | 0.00 | 0.00 | 5.01 |
178 | 179 | 0.745486 | CCTCACAATGATCAGCGCCA | 60.745 | 55.000 | 2.29 | 0.00 | 0.00 | 5.69 |
179 | 180 | 2.020131 | CCTCACAATGATCAGCGCC | 58.980 | 57.895 | 2.29 | 0.00 | 0.00 | 6.53 |
180 | 181 | 1.094073 | AGCCTCACAATGATCAGCGC | 61.094 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
181 | 182 | 2.229675 | TAGCCTCACAATGATCAGCG | 57.770 | 50.000 | 0.09 | 0.00 | 0.00 | 5.18 |
182 | 183 | 2.286294 | CGTTAGCCTCACAATGATCAGC | 59.714 | 50.000 | 0.09 | 0.00 | 0.00 | 4.26 |
183 | 184 | 3.785486 | TCGTTAGCCTCACAATGATCAG | 58.215 | 45.455 | 0.09 | 0.00 | 0.00 | 2.90 |
184 | 185 | 3.885724 | TCGTTAGCCTCACAATGATCA | 57.114 | 42.857 | 0.00 | 0.00 | 0.00 | 2.92 |
185 | 186 | 3.557595 | CCTTCGTTAGCCTCACAATGATC | 59.442 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
186 | 187 | 3.197766 | TCCTTCGTTAGCCTCACAATGAT | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
187 | 188 | 2.565391 | TCCTTCGTTAGCCTCACAATGA | 59.435 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
188 | 189 | 2.932614 | CTCCTTCGTTAGCCTCACAATG | 59.067 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
189 | 190 | 2.678190 | GCTCCTTCGTTAGCCTCACAAT | 60.678 | 50.000 | 0.00 | 0.00 | 32.40 | 2.71 |
190 | 191 | 1.337823 | GCTCCTTCGTTAGCCTCACAA | 60.338 | 52.381 | 0.00 | 0.00 | 32.40 | 3.33 |
191 | 192 | 0.246635 | GCTCCTTCGTTAGCCTCACA | 59.753 | 55.000 | 0.00 | 0.00 | 32.40 | 3.58 |
192 | 193 | 0.802607 | CGCTCCTTCGTTAGCCTCAC | 60.803 | 60.000 | 0.00 | 0.00 | 35.22 | 3.51 |
193 | 194 | 1.511305 | CGCTCCTTCGTTAGCCTCA | 59.489 | 57.895 | 0.00 | 0.00 | 35.22 | 3.86 |
194 | 195 | 1.878975 | GCGCTCCTTCGTTAGCCTC | 60.879 | 63.158 | 0.00 | 0.00 | 35.22 | 4.70 |
195 | 196 | 1.889530 | AAGCGCTCCTTCGTTAGCCT | 61.890 | 55.000 | 12.06 | 0.00 | 35.22 | 4.58 |
196 | 197 | 1.448013 | AAGCGCTCCTTCGTTAGCC | 60.448 | 57.895 | 12.06 | 0.00 | 35.22 | 3.93 |
197 | 198 | 1.014564 | ACAAGCGCTCCTTCGTTAGC | 61.015 | 55.000 | 12.06 | 0.00 | 35.33 | 3.09 |
198 | 199 | 0.992802 | GACAAGCGCTCCTTCGTTAG | 59.007 | 55.000 | 12.06 | 0.00 | 0.00 | 2.34 |
199 | 200 | 0.315886 | TGACAAGCGCTCCTTCGTTA | 59.684 | 50.000 | 12.06 | 0.00 | 0.00 | 3.18 |
200 | 201 | 0.531974 | TTGACAAGCGCTCCTTCGTT | 60.532 | 50.000 | 12.06 | 0.00 | 0.00 | 3.85 |
201 | 202 | 1.069090 | TTGACAAGCGCTCCTTCGT | 59.931 | 52.632 | 12.06 | 2.86 | 0.00 | 3.85 |
202 | 203 | 0.946221 | AGTTGACAAGCGCTCCTTCG | 60.946 | 55.000 | 12.06 | 0.00 | 0.00 | 3.79 |
203 | 204 | 1.996191 | CTAGTTGACAAGCGCTCCTTC | 59.004 | 52.381 | 12.06 | 8.24 | 0.00 | 3.46 |
204 | 205 | 1.344763 | ACTAGTTGACAAGCGCTCCTT | 59.655 | 47.619 | 12.06 | 0.00 | 0.00 | 3.36 |
205 | 206 | 0.969894 | ACTAGTTGACAAGCGCTCCT | 59.030 | 50.000 | 12.06 | 0.00 | 0.00 | 3.69 |
206 | 207 | 1.071605 | CACTAGTTGACAAGCGCTCC | 58.928 | 55.000 | 12.06 | 3.62 | 0.00 | 4.70 |
207 | 208 | 0.440371 | GCACTAGTTGACAAGCGCTC | 59.560 | 55.000 | 12.06 | 0.00 | 0.00 | 5.03 |
208 | 209 | 0.034059 | AGCACTAGTTGACAAGCGCT | 59.966 | 50.000 | 2.64 | 2.64 | 0.00 | 5.92 |
209 | 210 | 0.868406 | AAGCACTAGTTGACAAGCGC | 59.132 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
210 | 211 | 1.461127 | GGAAGCACTAGTTGACAAGCG | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 4.68 |
211 | 212 | 1.461127 | CGGAAGCACTAGTTGACAAGC | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
212 | 213 | 2.731976 | GTCGGAAGCACTAGTTGACAAG | 59.268 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
213 | 214 | 2.364324 | AGTCGGAAGCACTAGTTGACAA | 59.636 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
214 | 215 | 1.961394 | AGTCGGAAGCACTAGTTGACA | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
215 | 216 | 2.726832 | AGTCGGAAGCACTAGTTGAC | 57.273 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
216 | 217 | 3.321111 | AGAAAGTCGGAAGCACTAGTTGA | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
217 | 218 | 3.654414 | AGAAAGTCGGAAGCACTAGTTG | 58.346 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
218 | 219 | 4.308265 | GAAGAAAGTCGGAAGCACTAGTT | 58.692 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
219 | 220 | 3.306156 | GGAAGAAAGTCGGAAGCACTAGT | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
220 | 221 | 3.254892 | GGAAGAAAGTCGGAAGCACTAG | 58.745 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
221 | 222 | 2.631062 | TGGAAGAAAGTCGGAAGCACTA | 59.369 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
222 | 223 | 1.416401 | TGGAAGAAAGTCGGAAGCACT | 59.584 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
223 | 224 | 1.878953 | TGGAAGAAAGTCGGAAGCAC | 58.121 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
224 | 225 | 2.859165 | ATGGAAGAAAGTCGGAAGCA | 57.141 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
225 | 226 | 2.420372 | GGAATGGAAGAAAGTCGGAAGC | 59.580 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
226 | 227 | 3.674997 | TGGAATGGAAGAAAGTCGGAAG | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
227 | 228 | 3.780804 | TGGAATGGAAGAAAGTCGGAA | 57.219 | 42.857 | 0.00 | 0.00 | 0.00 | 4.30 |
228 | 229 | 3.609853 | CATGGAATGGAAGAAAGTCGGA | 58.390 | 45.455 | 0.00 | 0.00 | 41.79 | 4.55 |
242 | 243 | 8.704668 | AGAGGTTCTAAAAACAAAACATGGAAT | 58.295 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
243 | 244 | 8.073467 | AGAGGTTCTAAAAACAAAACATGGAA | 57.927 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
244 | 245 | 7.654022 | AGAGGTTCTAAAAACAAAACATGGA | 57.346 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
245 | 246 | 7.978975 | TGAAGAGGTTCTAAAAACAAAACATGG | 59.021 | 33.333 | 0.00 | 0.00 | 33.38 | 3.66 |
246 | 247 | 8.925161 | TGAAGAGGTTCTAAAAACAAAACATG | 57.075 | 30.769 | 0.00 | 0.00 | 33.38 | 3.21 |
247 | 248 | 8.749354 | ACTGAAGAGGTTCTAAAAACAAAACAT | 58.251 | 29.630 | 0.00 | 0.00 | 33.38 | 2.71 |
248 | 249 | 8.117813 | ACTGAAGAGGTTCTAAAAACAAAACA | 57.882 | 30.769 | 0.00 | 0.00 | 33.38 | 2.83 |
249 | 250 | 8.981724 | AACTGAAGAGGTTCTAAAAACAAAAC | 57.018 | 30.769 | 0.00 | 0.00 | 33.38 | 2.43 |
296 | 297 | 8.635765 | AATCACTAATCTTCCTAGCACAAAAA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
297 | 298 | 9.905713 | ATAATCACTAATCTTCCTAGCACAAAA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
298 | 299 | 9.330063 | CATAATCACTAATCTTCCTAGCACAAA | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
299 | 300 | 7.933577 | CCATAATCACTAATCTTCCTAGCACAA | 59.066 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
300 | 301 | 7.290014 | TCCATAATCACTAATCTTCCTAGCACA | 59.710 | 37.037 | 0.00 | 0.00 | 0.00 | 4.57 |
301 | 302 | 7.600752 | GTCCATAATCACTAATCTTCCTAGCAC | 59.399 | 40.741 | 0.00 | 0.00 | 0.00 | 4.40 |
302 | 303 | 7.256332 | GGTCCATAATCACTAATCTTCCTAGCA | 60.256 | 40.741 | 0.00 | 0.00 | 0.00 | 3.49 |
303 | 304 | 7.100409 | GGTCCATAATCACTAATCTTCCTAGC | 58.900 | 42.308 | 0.00 | 0.00 | 0.00 | 3.42 |
304 | 305 | 7.176865 | TCGGTCCATAATCACTAATCTTCCTAG | 59.823 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
305 | 306 | 7.008332 | TCGGTCCATAATCACTAATCTTCCTA | 58.992 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
306 | 307 | 5.839063 | TCGGTCCATAATCACTAATCTTCCT | 59.161 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
307 | 308 | 6.015350 | TCTCGGTCCATAATCACTAATCTTCC | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
308 | 309 | 6.982852 | TCTCGGTCCATAATCACTAATCTTC | 58.017 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
309 | 310 | 6.978674 | TCTCGGTCCATAATCACTAATCTT | 57.021 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
310 | 311 | 8.830915 | ATATCTCGGTCCATAATCACTAATCT | 57.169 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
311 | 312 | 9.877178 | AAATATCTCGGTCCATAATCACTAATC | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
314 | 315 | 9.706691 | GAAAAATATCTCGGTCCATAATCACTA | 57.293 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
315 | 316 | 7.661847 | GGAAAAATATCTCGGTCCATAATCACT | 59.338 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
316 | 317 | 7.661847 | AGGAAAAATATCTCGGTCCATAATCAC | 59.338 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
317 | 318 | 7.745717 | AGGAAAAATATCTCGGTCCATAATCA | 58.254 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
318 | 319 | 9.152595 | GTAGGAAAAATATCTCGGTCCATAATC | 57.847 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
319 | 320 | 8.101419 | GGTAGGAAAAATATCTCGGTCCATAAT | 58.899 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
320 | 321 | 7.071447 | TGGTAGGAAAAATATCTCGGTCCATAA | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
321 | 322 | 6.555738 | TGGTAGGAAAAATATCTCGGTCCATA | 59.444 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
322 | 323 | 5.368523 | TGGTAGGAAAAATATCTCGGTCCAT | 59.631 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
323 | 324 | 4.717778 | TGGTAGGAAAAATATCTCGGTCCA | 59.282 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
324 | 325 | 5.286267 | TGGTAGGAAAAATATCTCGGTCC | 57.714 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
325 | 326 | 5.070047 | TCCTGGTAGGAAAAATATCTCGGTC | 59.930 | 44.000 | 0.00 | 0.00 | 42.51 | 4.79 |
326 | 327 | 4.966805 | TCCTGGTAGGAAAAATATCTCGGT | 59.033 | 41.667 | 0.00 | 0.00 | 42.51 | 4.69 |
327 | 328 | 5.511545 | CCTCCTGGTAGGAAAAATATCTCGG | 60.512 | 48.000 | 6.39 | 0.00 | 45.28 | 4.63 |
328 | 329 | 5.542779 | CCTCCTGGTAGGAAAAATATCTCG | 58.457 | 45.833 | 6.39 | 0.00 | 45.28 | 4.04 |
329 | 330 | 5.163195 | TGCCTCCTGGTAGGAAAAATATCTC | 60.163 | 44.000 | 14.12 | 0.00 | 45.28 | 2.75 |
330 | 331 | 4.726825 | TGCCTCCTGGTAGGAAAAATATCT | 59.273 | 41.667 | 14.12 | 0.00 | 45.28 | 1.98 |
331 | 332 | 5.048846 | TGCCTCCTGGTAGGAAAAATATC | 57.951 | 43.478 | 14.12 | 0.00 | 45.28 | 1.63 |
332 | 333 | 5.449553 | CTTGCCTCCTGGTAGGAAAAATAT | 58.550 | 41.667 | 14.12 | 0.00 | 45.28 | 1.28 |
333 | 334 | 4.855340 | CTTGCCTCCTGGTAGGAAAAATA | 58.145 | 43.478 | 14.12 | 0.00 | 45.28 | 1.40 |
334 | 335 | 3.701664 | CTTGCCTCCTGGTAGGAAAAAT | 58.298 | 45.455 | 14.12 | 0.00 | 45.28 | 1.82 |
335 | 336 | 2.817839 | GCTTGCCTCCTGGTAGGAAAAA | 60.818 | 50.000 | 14.12 | 6.06 | 45.28 | 1.94 |
336 | 337 | 1.271926 | GCTTGCCTCCTGGTAGGAAAA | 60.272 | 52.381 | 14.12 | 7.88 | 45.28 | 2.29 |
337 | 338 | 0.328258 | GCTTGCCTCCTGGTAGGAAA | 59.672 | 55.000 | 14.12 | 9.85 | 45.28 | 3.13 |
338 | 339 | 1.899437 | CGCTTGCCTCCTGGTAGGAA | 61.899 | 60.000 | 14.12 | 3.16 | 45.28 | 3.36 |
339 | 340 | 2.359169 | CGCTTGCCTCCTGGTAGGA | 61.359 | 63.158 | 14.12 | 0.00 | 43.43 | 2.94 |
340 | 341 | 1.690219 | ATCGCTTGCCTCCTGGTAGG | 61.690 | 60.000 | 7.57 | 7.57 | 39.87 | 3.18 |
341 | 342 | 1.000283 | CTATCGCTTGCCTCCTGGTAG | 60.000 | 57.143 | 0.00 | 0.00 | 35.27 | 3.18 |
342 | 343 | 1.040646 | CTATCGCTTGCCTCCTGGTA | 58.959 | 55.000 | 0.00 | 0.00 | 35.27 | 3.25 |
343 | 344 | 1.690219 | CCTATCGCTTGCCTCCTGGT | 61.690 | 60.000 | 0.00 | 0.00 | 35.27 | 4.00 |
344 | 345 | 1.070445 | CCTATCGCTTGCCTCCTGG | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
345 | 346 | 1.596477 | GCCTATCGCTTGCCTCCTG | 60.596 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
346 | 347 | 2.812619 | GGCCTATCGCTTGCCTCCT | 61.813 | 63.158 | 0.00 | 0.00 | 42.01 | 3.69 |
347 | 348 | 2.281139 | GGCCTATCGCTTGCCTCC | 60.281 | 66.667 | 0.00 | 0.00 | 42.01 | 4.30 |
348 | 349 | 2.663188 | CGGCCTATCGCTTGCCTC | 60.663 | 66.667 | 0.00 | 0.00 | 43.12 | 4.70 |
349 | 350 | 4.241555 | CCGGCCTATCGCTTGCCT | 62.242 | 66.667 | 0.00 | 0.00 | 43.12 | 4.75 |
352 | 353 | 4.241555 | AGGCCGGCCTATCGCTTG | 62.242 | 66.667 | 46.67 | 0.00 | 46.14 | 4.01 |
370 | 371 | 1.674441 | TGACCAGCGAGTCCGTATTAG | 59.326 | 52.381 | 6.69 | 0.00 | 35.83 | 1.73 |
386 | 387 | 1.607467 | ATGGGCCTTGCTGTTGACC | 60.607 | 57.895 | 4.53 | 0.00 | 0.00 | 4.02 |
432 | 433 | 1.518367 | GAGAGAGAGAGAGAGGGGGA | 58.482 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
435 | 436 | 0.108585 | CGGGAGAGAGAGAGAGAGGG | 59.891 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
437 | 438 | 0.180171 | TGCGGGAGAGAGAGAGAGAG | 59.820 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1219 | 1235 | 0.716108 | GACGAATTGACGACAGGCTG | 59.284 | 55.000 | 14.16 | 14.16 | 37.03 | 4.85 |
1224 | 1240 | 0.318360 | AGTGCGACGAATTGACGACA | 60.318 | 50.000 | 0.00 | 0.00 | 37.99 | 4.35 |
1252 | 1269 | 2.225382 | TCTGGTACCGAACATCTCCA | 57.775 | 50.000 | 7.57 | 0.00 | 0.00 | 3.86 |
1408 | 1453 | 6.426328 | TGCAAGTCAACAAACAAAACAGAAAT | 59.574 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
1411 | 1456 | 4.876125 | TGCAAGTCAACAAACAAAACAGA | 58.124 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
1449 | 1494 | 7.876936 | AGAGATTGTGATGCTACATTTCATT | 57.123 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1465 | 1510 | 8.561738 | TTTAAAAGGCGAGAATAAGAGATTGT | 57.438 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
1481 | 1527 | 9.073368 | GCTTAACTTACAGCTAATTTAAAAGGC | 57.927 | 33.333 | 0.00 | 0.00 | 32.87 | 4.35 |
1541 | 1587 | 4.445385 | GCAAAATACAGCACTTCCACAAAG | 59.555 | 41.667 | 0.00 | 0.00 | 41.08 | 2.77 |
1669 | 1715 | 2.821378 | CCCAGATGAAGCATGTTGACAA | 59.179 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1690 | 1736 | 5.075858 | TGCATTCAATTCCTGGTCATTTC | 57.924 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
1746 | 1792 | 3.756434 | GGTACACAGCAGCCTTCAAATAA | 59.244 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1759 | 1937 | 4.569761 | TCGATCAAGATAGGTACACAGC | 57.430 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1783 | 1961 | 3.609853 | TCATGCCTCATGGTTCTACAAC | 58.390 | 45.455 | 6.92 | 0.00 | 41.66 | 3.32 |
2028 | 2206 | 1.975680 | ACGACCATGGTTAGTCAGGTT | 59.024 | 47.619 | 20.85 | 0.00 | 33.08 | 3.50 |
2086 | 2264 | 6.518200 | GCACCTCCTGGTTCAAAAATAATCAA | 60.518 | 38.462 | 0.00 | 0.00 | 46.05 | 2.57 |
2161 | 2340 | 6.294120 | CCATTCTGAGCAACATACTGTCAAAA | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
2174 | 2353 | 7.255977 | GGTCATACTACTATCCATTCTGAGCAA | 60.256 | 40.741 | 0.00 | 0.00 | 0.00 | 3.91 |
2214 | 2393 | 2.957402 | TCACCTGAAGGCAAGAACAT | 57.043 | 45.000 | 0.00 | 0.00 | 39.32 | 2.71 |
2430 | 2609 | 7.428020 | GCCATAGCATGATTGTCTTGAAAATA | 58.572 | 34.615 | 0.00 | 0.00 | 39.53 | 1.40 |
2641 | 2820 | 1.899142 | GTGGCACCCATACCAACAAAT | 59.101 | 47.619 | 6.29 | 0.00 | 37.79 | 2.32 |
2820 | 3000 | 6.338214 | TGATTGCAGCCAATACTGTTAAAA | 57.662 | 33.333 | 0.00 | 0.00 | 41.60 | 1.52 |
2869 | 3049 | 9.863845 | TGACAATCTTCTAAATAACATGTCGTA | 57.136 | 29.630 | 0.00 | 0.00 | 37.93 | 3.43 |
2880 | 3060 | 6.995091 | GCCAGGAGTATGACAATCTTCTAAAT | 59.005 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3041 | 3221 | 7.772332 | AGTACTAAACATTATTGAGCTTCCG | 57.228 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3128 | 3308 | 6.237942 | CCAGACAGATTTATTAACAGTGCTCG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 5.03 |
3135 | 3315 | 6.878923 | CCTGACACCAGACAGATTTATTAACA | 59.121 | 38.462 | 0.00 | 0.00 | 43.02 | 2.41 |
3234 | 3414 | 0.990374 | ATCCTTGTCTTGGAGCTGCT | 59.010 | 50.000 | 6.82 | 0.00 | 36.99 | 4.24 |
3238 | 3418 | 2.746362 | CTGAACATCCTTGTCTTGGAGC | 59.254 | 50.000 | 0.00 | 0.00 | 36.99 | 4.70 |
3277 | 3459 | 7.990917 | TCACTAGAGTCACACAAGATAGATTC | 58.009 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
3299 | 3481 | 6.586344 | TCATGAAGGAAGAGGTATGATTCAC | 58.414 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3310 | 3492 | 5.454471 | CCCAGACCTAATCATGAAGGAAGAG | 60.454 | 48.000 | 18.52 | 6.68 | 36.66 | 2.85 |
3658 | 3840 | 6.385649 | AACATACGTCAAATGTTCCAAGTT | 57.614 | 33.333 | 8.95 | 0.00 | 42.45 | 2.66 |
3789 | 3971 | 4.104102 | ACAGAAGGTGTAAAAGTGATCCCA | 59.896 | 41.667 | 0.00 | 0.00 | 37.75 | 4.37 |
3931 | 4113 | 7.859325 | TTAGGAGCCAATTGATAAACAGTAC | 57.141 | 36.000 | 7.12 | 0.00 | 0.00 | 2.73 |
3941 | 4123 | 3.266772 | AGTGGTCATTAGGAGCCAATTGA | 59.733 | 43.478 | 7.12 | 0.00 | 43.44 | 2.57 |
3959 | 4143 | 3.313526 | CCGATGCCTCTGAAATTTAGTGG | 59.686 | 47.826 | 2.02 | 2.02 | 33.15 | 4.00 |
3975 | 4159 | 2.063156 | TGTTTGAACATTGCCGATGC | 57.937 | 45.000 | 0.00 | 0.00 | 39.47 | 3.91 |
3989 | 4173 | 6.933130 | CAGCAATTTAGATGCATCATGTTTG | 58.067 | 36.000 | 27.81 | 22.88 | 46.22 | 2.93 |
4053 | 4240 | 9.725019 | CCAATACTATCCACATGATTTAGCTTA | 57.275 | 33.333 | 0.00 | 0.00 | 34.76 | 3.09 |
4056 | 4243 | 8.798859 | ATCCAATACTATCCACATGATTTAGC | 57.201 | 34.615 | 0.00 | 0.00 | 34.76 | 3.09 |
4118 | 4310 | 9.301153 | ACAAGACAAGAAAACATCATTTTGTAC | 57.699 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
4128 | 4320 | 5.284079 | GCACATCACAAGACAAGAAAACAT | 58.716 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
4134 | 4326 | 2.238942 | ACGCACATCACAAGACAAGA | 57.761 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4140 | 4332 | 7.003939 | TCAAATAAGATACGCACATCACAAG | 57.996 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4181 | 4373 | 5.882553 | TCAACACAGCATGCATATAACTTG | 58.117 | 37.500 | 21.98 | 9.14 | 42.53 | 3.16 |
4206 | 4398 | 5.874261 | TCTCATCTCGATAAATGTGCACAAA | 59.126 | 36.000 | 25.72 | 12.96 | 0.00 | 2.83 |
4250 | 4442 | 6.555315 | AGTGCACTAAAAGCATAATTAGCAC | 58.445 | 36.000 | 20.16 | 0.00 | 44.79 | 4.40 |
4257 | 4449 | 6.148811 | GGTGTTCTAGTGCACTAAAAGCATAA | 59.851 | 38.462 | 25.95 | 5.93 | 44.79 | 1.90 |
4268 | 4460 | 1.270305 | TGCTGAGGTGTTCTAGTGCAC | 60.270 | 52.381 | 9.40 | 9.40 | 35.07 | 4.57 |
4277 | 4469 | 6.392354 | CAATTAATCATGTTGCTGAGGTGTT | 58.608 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4297 | 4489 | 6.959639 | TTTGTGTAAGAAAGAGAGCCAATT | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4301 | 4493 | 7.492352 | TTAGTTTTGTGTAAGAAAGAGAGCC | 57.508 | 36.000 | 0.00 | 0.00 | 27.82 | 4.70 |
4329 | 4522 | 2.248248 | TGGTCAGAGGTAGTTGAGTGG | 58.752 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4332 | 4525 | 4.160439 | TGCTATTGGTCAGAGGTAGTTGAG | 59.840 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
4359 | 4552 | 2.766828 | GGGGCTTGAGAGTTTAGAGCTA | 59.233 | 50.000 | 0.00 | 0.00 | 33.96 | 3.32 |
4523 | 4716 | 0.041238 | TGATCGACAAGGGGAGGACT | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4534 | 4727 | 2.181777 | GCGTGAGGCTGATCGACA | 59.818 | 61.111 | 0.00 | 0.00 | 39.11 | 4.35 |
4546 | 4739 | 4.373116 | GGAGGTTGCTCGGCGTGA | 62.373 | 66.667 | 13.77 | 0.00 | 0.00 | 4.35 |
4566 | 4759 | 3.119096 | GTTCTGGTTCGAGGCGCC | 61.119 | 66.667 | 21.89 | 21.89 | 0.00 | 6.53 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.