Multiple sequence alignment - TraesCS2A01G142800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G142800 chr2A 100.000 5803 0 0 1 5803 88013911 88008109 0.000000e+00 10717.0
1 TraesCS2A01G142800 chr2A 94.839 620 30 2 5183 5801 715759452 715758834 0.000000e+00 966.0
2 TraesCS2A01G142800 chr2B 92.878 2345 96 28 212 2529 140847975 140845675 0.000000e+00 3339.0
3 TraesCS2A01G142800 chr2B 93.453 1283 66 10 3912 5186 140844876 140843604 0.000000e+00 1888.0
4 TraesCS2A01G142800 chr2B 89.083 229 20 5 2572 2797 140845677 140845451 4.430000e-71 279.0
5 TraesCS2A01G142800 chr2B 85.036 274 31 4 2991 3263 140845070 140845334 2.660000e-68 270.0
6 TraesCS2A01G142800 chr2B 90.155 193 15 2 1 189 140848351 140848159 1.250000e-61 248.0
7 TraesCS2A01G142800 chr2B 96.610 118 3 1 2878 2994 140845453 140845336 1.650000e-45 195.0
8 TraesCS2A01G142800 chr2B 89.683 126 12 1 3267 3392 140845034 140844910 6.020000e-35 159.0
9 TraesCS2A01G142800 chr2D 92.369 2254 101 25 212 2439 87757931 87755723 0.000000e+00 3144.0
10 TraesCS2A01G142800 chr2D 92.350 1987 95 19 3218 5183 87754762 87752812 0.000000e+00 2774.0
11 TraesCS2A01G142800 chr2D 94.550 367 18 1 2439 2803 87755476 87755110 3.040000e-157 566.0
12 TraesCS2A01G142800 chr2D 94.485 272 12 2 2868 3139 87755003 87754735 3.230000e-112 416.0
13 TraesCS2A01G142800 chr2D 85.088 114 13 4 2795 2907 412382603 412382493 4.750000e-21 113.0
14 TraesCS2A01G142800 chr2D 94.231 52 3 0 3912 3963 48564070 48564121 4.820000e-11 80.5
15 TraesCS2A01G142800 chr5A 94.391 624 29 5 5182 5800 561704192 561704814 0.000000e+00 953.0
16 TraesCS2A01G142800 chr5A 93.548 620 38 2 5183 5801 1717259 1716641 0.000000e+00 922.0
17 TraesCS2A01G142800 chr5A 93.312 628 37 5 5177 5801 503639074 503639699 0.000000e+00 922.0
18 TraesCS2A01G142800 chr5A 86.493 422 43 7 3495 3912 494230882 494231293 8.870000e-123 451.0
19 TraesCS2A01G142800 chr5A 84.842 442 48 8 3426 3864 485383056 485382631 1.490000e-115 427.0
20 TraesCS2A01G142800 chr5A 88.323 334 22 7 3530 3858 297738048 297738369 9.120000e-103 385.0
21 TraesCS2A01G142800 chr1A 94.212 622 33 3 5182 5801 500280354 500280974 0.000000e+00 946.0
22 TraesCS2A01G142800 chr1A 94.286 105 5 1 2786 2890 86242690 86242793 6.020000e-35 159.0
23 TraesCS2A01G142800 chr1A 97.674 86 2 0 2794 2879 28616328 28616413 1.300000e-31 148.0
24 TraesCS2A01G142800 chr6A 94.080 625 30 6 5182 5801 297662204 297662826 0.000000e+00 942.0
25 TraesCS2A01G142800 chr6A 93.419 623 36 5 5182 5801 605138996 605139616 0.000000e+00 918.0
26 TraesCS2A01G142800 chr6A 95.050 101 4 1 2780 2879 26632854 26632954 2.160000e-34 158.0
27 TraesCS2A01G142800 chr7A 93.569 622 37 3 5182 5801 100575526 100574906 0.000000e+00 924.0
28 TraesCS2A01G142800 chr7A 93.538 619 38 2 5183 5800 23944538 23943921 0.000000e+00 920.0
29 TraesCS2A01G142800 chr7A 84.925 398 39 8 3468 3861 667232335 667231955 3.280000e-102 383.0
30 TraesCS2A01G142800 chr5D 86.881 404 40 4 3495 3894 390694033 390694427 1.920000e-119 440.0
31 TraesCS2A01G142800 chr5D 86.052 423 44 6 3495 3912 393058391 393057979 1.920000e-119 440.0
32 TraesCS2A01G142800 chr5D 94.059 101 6 0 2779 2879 49122558 49122658 2.800000e-33 154.0
33 TraesCS2A01G142800 chr5B 85.280 428 42 9 3495 3912 471022792 471023208 6.950000e-114 422.0
34 TraesCS2A01G142800 chr5B 84.397 423 45 10 3495 3912 473117045 473116639 4.210000e-106 396.0
35 TraesCS2A01G142800 chr5B 83.059 425 50 11 3489 3905 693677340 693677750 3.300000e-97 366.0
36 TraesCS2A01G142800 chr5B 95.876 97 4 0 2794 2890 417444379 417444283 2.160000e-34 158.0
37 TraesCS2A01G142800 chr5B 91.743 109 6 3 2795 2901 575975145 575975252 1.300000e-31 148.0
38 TraesCS2A01G142800 chr5B 84.211 76 9 3 3438 3512 49565202 49565275 2.900000e-08 71.3
39 TraesCS2A01G142800 chr6B 87.869 305 30 3 3426 3726 713117671 713117972 9.250000e-93 351.0
40 TraesCS2A01G142800 chr1D 87.713 293 26 5 3620 3912 324746925 324747207 3.350000e-87 333.0
41 TraesCS2A01G142800 chr7B 97.872 94 1 1 2794 2887 483787824 483787732 1.670000e-35 161.0
42 TraesCS2A01G142800 chr7B 85.000 80 10 2 3433 3511 484278630 484278552 4.820000e-11 80.5
43 TraesCS2A01G142800 chrUn 95.000 100 4 1 2794 2893 27475954 27476052 7.790000e-34 156.0
44 TraesCS2A01G142800 chr4D 91.818 110 6 3 2778 2887 482367387 482367493 3.620000e-32 150.0
45 TraesCS2A01G142800 chr3D 91.743 109 7 2 2773 2881 316907759 316907653 3.620000e-32 150.0
46 TraesCS2A01G142800 chr3B 93.220 59 4 0 3426 3484 678173777 678173719 2.880000e-13 87.9
47 TraesCS2A01G142800 chr3A 83.951 81 11 2 3433 3512 9857310 9857231 6.240000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G142800 chr2A 88008109 88013911 5802 True 10717 10717 100.0000 1 5803 1 chr2A.!!$R1 5802
1 TraesCS2A01G142800 chr2A 715758834 715759452 618 True 966 966 94.8390 5183 5801 1 chr2A.!!$R2 618
2 TraesCS2A01G142800 chr2B 140843604 140848351 4747 True 1018 3339 91.9770 1 5186 6 chr2B.!!$R1 5185
3 TraesCS2A01G142800 chr2D 87752812 87757931 5119 True 1725 3144 93.4385 212 5183 4 chr2D.!!$R2 4971
4 TraesCS2A01G142800 chr5A 561704192 561704814 622 False 953 953 94.3910 5182 5800 1 chr5A.!!$F4 618
5 TraesCS2A01G142800 chr5A 1716641 1717259 618 True 922 922 93.5480 5183 5801 1 chr5A.!!$R1 618
6 TraesCS2A01G142800 chr5A 503639074 503639699 625 False 922 922 93.3120 5177 5801 1 chr5A.!!$F3 624
7 TraesCS2A01G142800 chr1A 500280354 500280974 620 False 946 946 94.2120 5182 5801 1 chr1A.!!$F3 619
8 TraesCS2A01G142800 chr6A 297662204 297662826 622 False 942 942 94.0800 5182 5801 1 chr6A.!!$F2 619
9 TraesCS2A01G142800 chr6A 605138996 605139616 620 False 918 918 93.4190 5182 5801 1 chr6A.!!$F3 619
10 TraesCS2A01G142800 chr7A 100574906 100575526 620 True 924 924 93.5690 5182 5801 1 chr7A.!!$R2 619
11 TraesCS2A01G142800 chr7A 23943921 23944538 617 True 920 920 93.5380 5183 5800 1 chr7A.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 844 0.322008 CTTCACCTGGGCCTTCACTC 60.322 60.0 4.53 0.0 0.0 3.51 F
741 934 0.530288 CGGCCCATTTGTAAACCCAG 59.470 55.0 0.00 0.0 0.0 4.45 F
1969 2169 0.606673 GGAGGGTTCTGGCTGTTGAC 60.607 60.0 0.00 0.0 0.0 3.18 F
3506 4331 0.321346 TTCTTTCCCGTTACGTCCCC 59.679 55.0 3.52 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2300 0.861837 CTCACTCGCAACAACAGACC 59.138 55.0 0.0 0.0 0.0 3.85 R
2564 3059 0.976641 TCGAAACAGAGGCATCCACT 59.023 50.0 0.0 0.0 0.0 4.00 R
3619 4444 0.043334 CAAAGGGAGGAGGAGGAGGA 59.957 60.0 0.0 0.0 0.0 3.71 R
5135 5969 0.035439 ATTAGCACCCACAACCTCCG 60.035 55.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.646267 TCTACTTATAGCCAAACGACCATTT 58.354 36.000 0.00 0.00 0.00 2.32
33 34 5.949735 ACTTATAGCCAAACGACCATTTTG 58.050 37.500 0.00 0.00 34.31 2.44
34 35 5.708230 ACTTATAGCCAAACGACCATTTTGA 59.292 36.000 0.00 0.00 36.24 2.69
38 39 3.057315 AGCCAAACGACCATTTTGATCAG 60.057 43.478 0.00 0.00 36.24 2.90
39 40 3.305335 GCCAAACGACCATTTTGATCAGT 60.305 43.478 0.00 0.00 36.24 3.41
71 72 3.772572 TCATGACACGATAAAGGGGAAGA 59.227 43.478 0.00 0.00 0.00 2.87
108 109 1.075542 CAATTCAGTCGCGGCACTAA 58.924 50.000 15.58 3.86 0.00 2.24
116 117 1.777461 GTCGCGGCACTAAATAGTACG 59.223 52.381 5.47 10.63 38.25 3.67
142 146 5.242838 TGAAAACCTAGATTCGGTGCATTTT 59.757 36.000 0.00 0.00 34.33 1.82
253 419 1.360852 AGAAGAGAGGAGGAGAGGCAA 59.639 52.381 0.00 0.00 0.00 4.52
254 420 2.023113 AGAAGAGAGGAGGAGAGGCAAT 60.023 50.000 0.00 0.00 0.00 3.56
255 421 1.792115 AGAGAGGAGGAGAGGCAATG 58.208 55.000 0.00 0.00 0.00 2.82
256 422 0.758123 GAGAGGAGGAGAGGCAATGG 59.242 60.000 0.00 0.00 0.00 3.16
257 423 0.693767 AGAGGAGGAGAGGCAATGGG 60.694 60.000 0.00 0.00 0.00 4.00
258 424 1.695597 AGGAGGAGAGGCAATGGGG 60.696 63.158 0.00 0.00 0.00 4.96
262 428 0.846427 AGGAGAGGCAATGGGGTCAA 60.846 55.000 0.00 0.00 0.00 3.18
380 546 2.032634 CATGACCGTCCACCCGTTG 61.033 63.158 0.00 0.00 0.00 4.10
419 585 2.879462 GTGGCGTCGCGGTAGAAG 60.879 66.667 11.75 0.00 0.00 2.85
670 842 1.973812 GCTTCACCTGGGCCTTCAC 60.974 63.158 4.53 0.00 0.00 3.18
672 844 0.322008 CTTCACCTGGGCCTTCACTC 60.322 60.000 4.53 0.00 0.00 3.51
713 904 2.817844 ACAAAAGTAATTCCAGCCCGTC 59.182 45.455 0.00 0.00 0.00 4.79
730 921 2.675075 CAACGAACCCGGCCCATT 60.675 61.111 0.00 0.00 40.78 3.16
731 922 2.116556 AACGAACCCGGCCCATTT 59.883 55.556 0.00 0.00 40.78 2.32
732 923 2.272447 AACGAACCCGGCCCATTTG 61.272 57.895 0.00 0.00 40.78 2.32
733 924 2.675075 CGAACCCGGCCCATTTGT 60.675 61.111 0.00 0.00 0.00 2.83
738 930 0.901114 ACCCGGCCCATTTGTAAACC 60.901 55.000 0.00 0.00 0.00 3.27
741 934 0.530288 CGGCCCATTTGTAAACCCAG 59.470 55.000 0.00 0.00 0.00 4.45
774 967 2.042741 CCCATGCAGGCCCATCAA 60.043 61.111 0.00 0.00 35.39 2.57
817 1010 1.211969 GCGTCTGGCGTCTGACTTA 59.788 57.895 22.23 0.00 43.66 2.24
866 1059 3.367743 TGGGTCCGGTTCGTCTCG 61.368 66.667 0.00 0.00 0.00 4.04
904 1097 1.153823 CAGCGACTCGGACCGAATT 60.154 57.895 18.93 7.77 34.74 2.17
913 1106 1.452108 GGACCGAATTCCCCAGCTG 60.452 63.158 6.78 6.78 0.00 4.24
1407 1604 1.521681 GAAGCGACGGCAAGGCTAT 60.522 57.895 0.00 0.00 43.41 2.97
1409 1606 2.202878 GCGACGGCAAGGCTATGA 60.203 61.111 0.00 0.00 39.62 2.15
1468 1668 4.069232 CGGAACAGGGAGAGCGCA 62.069 66.667 11.47 0.00 0.00 6.09
1525 1725 1.204113 AGCTGGAGGGGAAGGTCAAG 61.204 60.000 0.00 0.00 0.00 3.02
1576 1776 3.201494 AGGATCTCCTGCGTCACG 58.799 61.111 0.00 0.00 46.55 4.35
1579 1779 3.069980 GATCTCCTGCGTCACGGCT 62.070 63.158 0.00 0.00 0.00 5.52
1588 1788 3.112709 GTCACGGCTGAGAACGCC 61.113 66.667 0.00 0.00 44.11 5.68
1609 1809 1.584380 CTCTCAAGCAGCAACTGGCC 61.584 60.000 0.00 0.00 46.50 5.36
1612 1812 4.586235 AAGCAGCAACTGGCCGGT 62.586 61.111 12.85 12.85 46.50 5.28
1654 1854 3.849951 CCGCTGCCGATGTACCCT 61.850 66.667 0.00 0.00 36.29 4.34
1672 1872 1.094785 CTGGATTGTACCCTTTGCCG 58.905 55.000 0.00 0.00 0.00 5.69
1674 1874 0.679960 GGATTGTACCCTTTGCCGCT 60.680 55.000 0.00 0.00 0.00 5.52
1861 2061 2.680221 GCTGTTCCTGATGATGCTCTGT 60.680 50.000 0.00 0.00 0.00 3.41
1969 2169 0.606673 GGAGGGTTCTGGCTGTTGAC 60.607 60.000 0.00 0.00 0.00 3.18
1989 2189 1.617947 GGGCCTCGAGATGGTGTCTT 61.618 60.000 15.71 0.00 37.29 3.01
2014 2214 1.399727 GGTGTTGATTCGAAGTTGCCG 60.400 52.381 3.35 0.00 0.00 5.69
2056 2256 2.557317 CCGGCGTTGTTGTATATTCCT 58.443 47.619 6.01 0.00 0.00 3.36
2090 2290 6.540438 AGCATGTCAAGATCAATGGAAATT 57.460 33.333 0.00 0.00 0.00 1.82
2092 2292 6.816640 AGCATGTCAAGATCAATGGAAATTTG 59.183 34.615 0.00 0.00 0.00 2.32
2100 2300 7.042797 AGATCAATGGAAATTTGGTTATCCG 57.957 36.000 0.00 0.00 34.60 4.18
2125 2325 0.944386 TTGTTGCGAGTGAGAAAGCC 59.056 50.000 0.00 0.00 0.00 4.35
2374 2575 5.824904 AGGATGCTACAAAAGTTGCATAG 57.175 39.130 15.31 0.00 43.53 2.23
2529 3024 6.885952 TTATGTTTGCAAGTAACTTAGCCA 57.114 33.333 0.00 0.00 0.00 4.75
2530 3025 5.782893 ATGTTTGCAAGTAACTTAGCCAA 57.217 34.783 0.00 0.00 0.00 4.52
2531 3026 4.927422 TGTTTGCAAGTAACTTAGCCAAC 58.073 39.130 0.00 0.00 34.40 3.77
2532 3027 4.399618 TGTTTGCAAGTAACTTAGCCAACA 59.600 37.500 0.00 11.10 39.37 3.33
2533 3028 5.068460 TGTTTGCAAGTAACTTAGCCAACAT 59.932 36.000 0.00 0.00 37.60 2.71
2534 3029 6.263392 TGTTTGCAAGTAACTTAGCCAACATA 59.737 34.615 0.00 0.00 37.60 2.29
2535 3030 6.885952 TTGCAAGTAACTTAGCCAACATAA 57.114 33.333 0.00 0.00 0.00 1.90
2536 3031 6.494893 TGCAAGTAACTTAGCCAACATAAG 57.505 37.500 0.00 0.00 36.51 1.73
2537 3032 5.414454 TGCAAGTAACTTAGCCAACATAAGG 59.586 40.000 0.00 0.00 35.06 2.69
2538 3033 5.163652 GCAAGTAACTTAGCCAACATAAGGG 60.164 44.000 0.00 0.00 35.06 3.95
2539 3034 5.774102 AGTAACTTAGCCAACATAAGGGT 57.226 39.130 0.00 0.00 40.53 4.34
2540 3035 5.497474 AGTAACTTAGCCAACATAAGGGTG 58.503 41.667 0.00 0.00 37.45 4.61
2541 3036 3.366052 ACTTAGCCAACATAAGGGTGG 57.634 47.619 0.00 0.00 37.45 4.61
2542 3037 2.024414 CTTAGCCAACATAAGGGTGGC 58.976 52.381 14.87 14.87 45.30 5.01
2543 3038 4.432601 GCCAACATAAGGGTGGCA 57.567 55.556 17.51 0.00 44.42 4.92
2544 3039 2.664825 GCCAACATAAGGGTGGCAA 58.335 52.632 17.51 0.00 44.42 4.52
2545 3040 1.194218 GCCAACATAAGGGTGGCAAT 58.806 50.000 17.51 0.00 44.42 3.56
2546 3041 1.554617 GCCAACATAAGGGTGGCAATT 59.445 47.619 17.51 0.00 44.42 2.32
2547 3042 2.027285 GCCAACATAAGGGTGGCAATTT 60.027 45.455 17.51 0.00 44.42 1.82
2548 3043 3.558958 GCCAACATAAGGGTGGCAATTTT 60.559 43.478 17.51 0.00 44.42 1.82
2549 3044 4.252878 CCAACATAAGGGTGGCAATTTTC 58.747 43.478 0.00 0.00 0.00 2.29
2550 3045 4.020307 CCAACATAAGGGTGGCAATTTTCT 60.020 41.667 0.00 0.00 0.00 2.52
2551 3046 4.806640 ACATAAGGGTGGCAATTTTCTG 57.193 40.909 0.00 0.00 0.00 3.02
2552 3047 3.515104 ACATAAGGGTGGCAATTTTCTGG 59.485 43.478 0.00 0.00 0.00 3.86
2553 3048 2.397044 AAGGGTGGCAATTTTCTGGA 57.603 45.000 0.00 0.00 0.00 3.86
2554 3049 2.397044 AGGGTGGCAATTTTCTGGAA 57.603 45.000 0.00 0.00 0.00 3.53
2555 3050 2.688477 AGGGTGGCAATTTTCTGGAAA 58.312 42.857 0.00 0.00 0.00 3.13
2556 3051 3.250617 AGGGTGGCAATTTTCTGGAAAT 58.749 40.909 0.00 0.00 39.63 2.17
2557 3052 4.424842 AGGGTGGCAATTTTCTGGAAATA 58.575 39.130 0.00 0.00 36.96 1.40
2558 3053 5.032170 AGGGTGGCAATTTTCTGGAAATAT 58.968 37.500 0.00 0.00 36.96 1.28
2559 3054 5.488561 AGGGTGGCAATTTTCTGGAAATATT 59.511 36.000 0.00 0.00 36.96 1.28
2560 3055 6.671779 AGGGTGGCAATTTTCTGGAAATATTA 59.328 34.615 0.00 0.00 36.96 0.98
2561 3056 7.348011 AGGGTGGCAATTTTCTGGAAATATTAT 59.652 33.333 0.00 0.00 36.96 1.28
2562 3057 7.657354 GGGTGGCAATTTTCTGGAAATATTATC 59.343 37.037 0.00 0.00 36.96 1.75
2563 3058 8.424133 GGTGGCAATTTTCTGGAAATATTATCT 58.576 33.333 0.00 0.00 36.96 1.98
2572 3067 9.507329 TTTCTGGAAATATTATCTAGTGGATGC 57.493 33.333 0.00 0.00 35.98 3.91
2573 3068 7.624549 TCTGGAAATATTATCTAGTGGATGCC 58.375 38.462 0.00 0.00 35.98 4.40
2624 3121 9.185680 GAAAAGTGGTTACCATTTAGTATGGAT 57.814 33.333 12.46 0.00 41.64 3.41
2641 3138 1.673033 GGATAACGAGGCGATCATGGG 60.673 57.143 0.00 0.00 0.00 4.00
2810 3308 9.263446 TGTTATAACATACTCCCTCTGTAAACT 57.737 33.333 14.35 0.00 33.17 2.66
2821 3319 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2822 3320 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2823 3321 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2824 3322 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2825 3323 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2841 3339 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2842 3340 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2843 3341 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2845 3343 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2853 3351 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
2855 3353 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
3085 3626 5.128499 CCAAATTGGGTGGCATACATTTCTA 59.872 40.000 3.60 0.00 32.67 2.10
3088 3629 7.436320 AATTGGGTGGCATACATTTCTAAAT 57.564 32.000 0.00 0.00 0.00 1.40
3093 3634 7.102993 GGGTGGCATACATTTCTAAATTGTTT 58.897 34.615 0.00 0.00 0.00 2.83
3115 3656 4.457466 TGCATTGAGATATGTGATGTGCT 58.543 39.130 0.00 0.00 0.00 4.40
3120 3661 7.201539 GCATTGAGATATGTGATGTGCTATCTC 60.202 40.741 10.17 10.17 43.38 2.75
3122 3663 6.685657 TGAGATATGTGATGTGCTATCTCAC 58.314 40.000 14.10 7.73 45.72 3.51
3123 3664 6.492772 TGAGATATGTGATGTGCTATCTCACT 59.507 38.462 14.10 5.15 45.72 3.41
3124 3665 7.015001 TGAGATATGTGATGTGCTATCTCACTT 59.985 37.037 14.10 7.84 45.72 3.16
3125 3666 7.153315 AGATATGTGATGTGCTATCTCACTTG 58.847 38.462 7.94 0.00 39.94 3.16
3126 3667 3.264947 TGTGATGTGCTATCTCACTTGC 58.735 45.455 3.86 0.00 39.94 4.01
3127 3668 3.264947 GTGATGTGCTATCTCACTTGCA 58.735 45.455 0.00 0.00 37.04 4.08
3128 3669 3.686241 GTGATGTGCTATCTCACTTGCAA 59.314 43.478 0.00 0.00 37.04 4.08
3129 3670 4.334759 GTGATGTGCTATCTCACTTGCAAT 59.665 41.667 0.00 0.00 37.04 3.56
3130 3671 4.945543 TGATGTGCTATCTCACTTGCAATT 59.054 37.500 0.00 0.00 37.17 2.32
3131 3672 4.690184 TGTGCTATCTCACTTGCAATTG 57.310 40.909 10.37 10.37 37.17 2.32
3132 3673 4.074259 TGTGCTATCTCACTTGCAATTGT 58.926 39.130 15.50 1.02 37.17 2.71
3133 3674 5.244755 TGTGCTATCTCACTTGCAATTGTA 58.755 37.500 15.50 0.00 37.17 2.41
3134 3675 5.122239 TGTGCTATCTCACTTGCAATTGTAC 59.878 40.000 15.50 4.37 37.17 2.90
3135 3676 5.122239 GTGCTATCTCACTTGCAATTGTACA 59.878 40.000 15.50 0.00 37.17 2.90
3136 3677 5.352293 TGCTATCTCACTTGCAATTGTACAG 59.648 40.000 15.50 7.08 32.12 2.74
3137 3678 5.352569 GCTATCTCACTTGCAATTGTACAGT 59.647 40.000 15.50 6.45 0.00 3.55
3138 3679 6.128172 GCTATCTCACTTGCAATTGTACAGTT 60.128 38.462 15.50 0.00 0.00 3.16
3139 3680 7.064609 GCTATCTCACTTGCAATTGTACAGTTA 59.935 37.037 15.50 5.89 0.00 2.24
3140 3681 6.539649 TCTCACTTGCAATTGTACAGTTAC 57.460 37.500 15.50 0.00 0.00 2.50
3141 3682 6.052360 TCTCACTTGCAATTGTACAGTTACA 58.948 36.000 15.50 1.49 36.36 2.41
3142 3683 6.018262 TCTCACTTGCAATTGTACAGTTACAC 60.018 38.462 15.50 0.00 37.97 2.90
3143 3684 5.586643 TCACTTGCAATTGTACAGTTACACA 59.413 36.000 15.50 0.57 37.97 3.72
3144 3685 6.262049 TCACTTGCAATTGTACAGTTACACAT 59.738 34.615 15.50 0.00 37.97 3.21
3145 3686 6.360414 CACTTGCAATTGTACAGTTACACATG 59.640 38.462 8.55 7.50 37.97 3.21
3146 3687 6.039270 ACTTGCAATTGTACAGTTACACATGT 59.961 34.615 7.40 8.02 37.97 3.21
3147 3688 7.227711 ACTTGCAATTGTACAGTTACACATGTA 59.772 33.333 7.40 0.00 37.97 2.29
3148 3689 7.680442 TGCAATTGTACAGTTACACATGTAT 57.320 32.000 7.40 0.00 37.97 2.29
3149 3690 8.105097 TGCAATTGTACAGTTACACATGTATT 57.895 30.769 7.40 0.00 37.97 1.89
3150 3691 8.572185 TGCAATTGTACAGTTACACATGTATTT 58.428 29.630 7.40 0.00 37.97 1.40
3184 3725 9.994432 ATTTCTAGAAAATCGAATTGTAGCTTG 57.006 29.630 21.26 0.00 33.56 4.01
3185 3726 8.771920 TTCTAGAAAATCGAATTGTAGCTTGA 57.228 30.769 1.68 1.76 0.00 3.02
3186 3727 8.186178 TCTAGAAAATCGAATTGTAGCTTGAC 57.814 34.615 11.43 0.00 0.00 3.18
3187 3728 6.801539 AGAAAATCGAATTGTAGCTTGACA 57.198 33.333 0.00 0.00 0.00 3.58
3188 3729 7.383102 AGAAAATCGAATTGTAGCTTGACAT 57.617 32.000 0.00 0.00 0.00 3.06
3189 3730 7.820648 AGAAAATCGAATTGTAGCTTGACATT 58.179 30.769 0.00 0.00 0.00 2.71
3190 3731 8.946085 AGAAAATCGAATTGTAGCTTGACATTA 58.054 29.630 0.00 0.00 0.00 1.90
3191 3732 9.214953 GAAAATCGAATTGTAGCTTGACATTAG 57.785 33.333 0.00 0.00 0.00 1.73
3192 3733 6.851222 ATCGAATTGTAGCTTGACATTAGG 57.149 37.500 0.00 0.00 0.00 2.69
3193 3734 5.116180 TCGAATTGTAGCTTGACATTAGGG 58.884 41.667 0.00 0.00 0.00 3.53
3194 3735 5.105106 TCGAATTGTAGCTTGACATTAGGGA 60.105 40.000 0.00 0.00 0.00 4.20
3195 3736 5.760253 CGAATTGTAGCTTGACATTAGGGAT 59.240 40.000 0.00 0.00 0.00 3.85
3196 3737 6.260936 CGAATTGTAGCTTGACATTAGGGATT 59.739 38.462 0.00 0.00 0.00 3.01
3197 3738 7.201732 CGAATTGTAGCTTGACATTAGGGATTT 60.202 37.037 0.00 0.00 0.00 2.17
3198 3739 9.120538 GAATTGTAGCTTGACATTAGGGATTTA 57.879 33.333 0.00 0.00 0.00 1.40
3199 3740 9.646522 AATTGTAGCTTGACATTAGGGATTTAT 57.353 29.630 0.00 0.00 0.00 1.40
3200 3741 9.646522 ATTGTAGCTTGACATTAGGGATTTATT 57.353 29.630 0.00 0.00 0.00 1.40
3201 3742 8.677148 TGTAGCTTGACATTAGGGATTTATTC 57.323 34.615 0.00 0.00 0.00 1.75
3202 3743 8.494433 TGTAGCTTGACATTAGGGATTTATTCT 58.506 33.333 0.00 0.00 0.00 2.40
3203 3744 9.343539 GTAGCTTGACATTAGGGATTTATTCTT 57.656 33.333 0.00 0.00 0.00 2.52
3204 3745 8.230472 AGCTTGACATTAGGGATTTATTCTTG 57.770 34.615 0.00 0.00 0.00 3.02
3205 3746 7.836183 AGCTTGACATTAGGGATTTATTCTTGT 59.164 33.333 0.00 0.00 0.00 3.16
3206 3747 9.120538 GCTTGACATTAGGGATTTATTCTTGTA 57.879 33.333 0.00 0.00 0.00 2.41
3208 3749 9.627123 TTGACATTAGGGATTTATTCTTGTAGG 57.373 33.333 0.00 0.00 0.00 3.18
3209 3750 8.998814 TGACATTAGGGATTTATTCTTGTAGGA 58.001 33.333 0.00 0.00 0.00 2.94
3210 3751 9.847224 GACATTAGGGATTTATTCTTGTAGGAA 57.153 33.333 0.00 0.00 0.00 3.36
3221 3762 6.775594 ATTCTTGTAGGAAAAATAGGTGCC 57.224 37.500 0.00 0.00 0.00 5.01
3222 3763 5.249780 TCTTGTAGGAAAAATAGGTGCCA 57.750 39.130 0.00 0.00 0.00 4.92
3223 3764 5.826643 TCTTGTAGGAAAAATAGGTGCCAT 58.173 37.500 0.00 0.00 0.00 4.40
3224 3765 5.885912 TCTTGTAGGAAAAATAGGTGCCATC 59.114 40.000 0.00 0.00 0.00 3.51
3225 3766 5.450818 TGTAGGAAAAATAGGTGCCATCT 57.549 39.130 0.00 0.00 0.00 2.90
3226 3767 5.437060 TGTAGGAAAAATAGGTGCCATCTC 58.563 41.667 0.00 0.00 0.00 2.75
3230 3771 4.706962 GGAAAAATAGGTGCCATCTCAGTT 59.293 41.667 0.00 0.00 0.00 3.16
3239 3780 1.200948 GCCATCTCAGTTGCCTTTGTC 59.799 52.381 0.00 0.00 0.00 3.18
3333 4146 2.306847 AGTTGTTGCTTCCGATTGGTT 58.693 42.857 0.00 0.00 36.30 3.67
3354 4167 7.492524 TGGTTGCTTTTAACATACAACATTGA 58.507 30.769 6.52 0.00 41.80 2.57
3410 4234 3.931468 ACTCGTCATTGATGAAAGCTCTG 59.069 43.478 9.74 0.00 38.75 3.35
3411 4235 4.179298 CTCGTCATTGATGAAAGCTCTGA 58.821 43.478 9.74 0.00 38.75 3.27
3412 4236 3.928992 TCGTCATTGATGAAAGCTCTGAC 59.071 43.478 6.10 0.00 38.75 3.51
3465 4290 3.123804 CAGCAACCAGTGTATCCGTATC 58.876 50.000 0.00 0.00 0.00 2.24
3506 4331 0.321346 TTCTTTCCCGTTACGTCCCC 59.679 55.000 3.52 0.00 0.00 4.81
3531 4356 4.712122 ACTTCTCAAGCTCTAGTAGTGC 57.288 45.455 14.95 14.95 35.13 4.40
3614 4439 9.823647 TCTATCTAATGGAAGACTGTTGATTTC 57.176 33.333 0.00 0.00 0.00 2.17
3615 4440 7.872113 ATCTAATGGAAGACTGTTGATTTCC 57.128 36.000 7.13 7.13 39.59 3.13
3616 4441 7.020827 TCTAATGGAAGACTGTTGATTTCCT 57.979 36.000 12.36 0.00 39.80 3.36
3617 4442 7.106239 TCTAATGGAAGACTGTTGATTTCCTC 58.894 38.462 12.36 0.00 39.80 3.71
3618 4443 4.021102 TGGAAGACTGTTGATTTCCTCC 57.979 45.455 12.36 0.00 39.80 4.30
3619 4444 3.652869 TGGAAGACTGTTGATTTCCTCCT 59.347 43.478 12.36 0.00 39.80 3.69
3620 4445 4.257731 GGAAGACTGTTGATTTCCTCCTC 58.742 47.826 6.92 0.00 36.88 3.71
3621 4446 3.990959 AGACTGTTGATTTCCTCCTCC 57.009 47.619 0.00 0.00 0.00 4.30
3622 4447 3.525862 AGACTGTTGATTTCCTCCTCCT 58.474 45.455 0.00 0.00 0.00 3.69
3623 4448 3.517500 AGACTGTTGATTTCCTCCTCCTC 59.482 47.826 0.00 0.00 0.00 3.71
3624 4449 2.573915 ACTGTTGATTTCCTCCTCCTCC 59.426 50.000 0.00 0.00 0.00 4.30
3640 4465 1.008449 CCTCCTCCTCCTCCCTTTGTA 59.992 57.143 0.00 0.00 0.00 2.41
3674 4499 8.956533 AACTTTTATGTTTGGTAAATTGCTGT 57.043 26.923 0.00 0.00 0.00 4.40
3739 4564 9.065722 TGGATAAGATGATGGAAGATAATGGAT 57.934 33.333 0.00 0.00 0.00 3.41
3790 4616 6.918022 GGCTTGGTGCTTAATTGATAACATAC 59.082 38.462 0.00 0.00 42.39 2.39
3828 4654 9.936759 TTTTCAAAAATAGTCAAATGTATCCCC 57.063 29.630 0.00 0.00 0.00 4.81
3837 4663 5.104693 AGTCAAATGTATCCCCGTATTGACA 60.105 40.000 15.50 0.00 44.55 3.58
3858 4684 9.897744 TTGACACTTTTCAGAAATGACATATTC 57.102 29.630 14.22 0.00 0.00 1.75
3876 4702 7.693132 ACATATTCATGTATCTGTATTGCCCT 58.307 34.615 2.13 0.00 43.74 5.19
3894 4720 3.367087 GCCCTGATACTGATACGCGTATT 60.367 47.826 30.70 18.58 0.00 1.89
3904 4730 0.027455 TACGCGTATTCGTACCGGTG 59.973 55.000 19.93 0.15 43.15 4.94
3912 4738 3.746045 ATTCGTACCGGTGCAATCTAT 57.254 42.857 23.00 5.00 0.00 1.98
3913 4739 4.859304 ATTCGTACCGGTGCAATCTATA 57.141 40.909 23.00 0.00 0.00 1.31
3916 4742 3.251729 TCGTACCGGTGCAATCTATACTC 59.748 47.826 23.00 0.00 0.00 2.59
3917 4743 3.252701 CGTACCGGTGCAATCTATACTCT 59.747 47.826 23.00 0.00 0.00 3.24
3918 4744 3.735237 ACCGGTGCAATCTATACTCTG 57.265 47.619 6.12 0.00 0.00 3.35
3919 4745 2.365617 ACCGGTGCAATCTATACTCTGG 59.634 50.000 6.12 0.00 0.00 3.86
3920 4746 2.408050 CGGTGCAATCTATACTCTGGC 58.592 52.381 0.00 0.00 0.00 4.85
4017 4844 3.320826 AGTTTGCTAATTTCTGCCGGTTT 59.679 39.130 1.90 0.00 0.00 3.27
4085 4912 4.635765 GCTATCTCAGTTGCCATTGTACAA 59.364 41.667 11.41 11.41 0.00 2.41
4125 4952 6.017934 GTGAAGAACTGAATTGTAGCTTGACA 60.018 38.462 0.00 0.00 0.00 3.58
4169 4996 5.105716 GGAAGAAGTGTGTGCTATCTCAGTA 60.106 44.000 0.00 0.00 0.00 2.74
4253 5080 5.779771 TGCTGAAAGTTATTCCTTCCCATTT 59.220 36.000 0.00 0.00 35.30 2.32
4384 5212 2.297698 TAACTCCACGGAGAACCTCA 57.702 50.000 19.98 0.00 44.53 3.86
4399 5227 1.599606 CCTCACCTCCAGTCAGTCCG 61.600 65.000 0.00 0.00 0.00 4.79
4438 5266 2.958355 AGGATTTTACATTCCATGGCCG 59.042 45.455 6.96 0.00 34.27 6.13
4530 5358 1.611491 GGAAACAAACCGGCTTCATCA 59.389 47.619 0.00 0.00 0.00 3.07
4557 5385 2.997315 TCTGTCCTGGCTGACCCG 60.997 66.667 5.50 0.00 35.87 5.28
4566 5394 2.574399 GCTGACCCGAGAGTGGAC 59.426 66.667 0.00 0.00 0.00 4.02
4782 5610 4.494350 GAACTGATGTTCTGTGCATGTT 57.506 40.909 0.00 0.00 46.56 2.71
4868 5696 5.179182 GCTTTTATCTGCTTGCCTATCTCTC 59.821 44.000 0.00 0.00 0.00 3.20
4869 5697 5.876651 TTTATCTGCTTGCCTATCTCTCA 57.123 39.130 0.00 0.00 0.00 3.27
4904 5732 1.273327 CCAAACTTGGCCAAGGTGATC 59.727 52.381 41.04 0.00 42.21 2.92
4912 5740 5.306678 ACTTGGCCAAGGTGATCAAAAATTA 59.693 36.000 41.04 6.04 42.53 1.40
4936 5764 3.196469 TGCCCTAGTCTTCTGTGATCTTG 59.804 47.826 0.00 0.00 0.00 3.02
4943 5771 3.681897 GTCTTCTGTGATCTTGTCGCAAT 59.318 43.478 0.00 0.00 46.03 3.56
5036 5864 4.914983 TGAAGAGATGATCATATTGGCCC 58.085 43.478 8.54 0.00 0.00 5.80
5037 5865 4.351704 TGAAGAGATGATCATATTGGCCCA 59.648 41.667 8.54 0.00 0.00 5.36
5087 5915 2.880268 TGGCACTCAAACAAGAGTCATG 59.120 45.455 0.00 0.00 45.35 3.07
5119 5953 2.511452 ATATTGGCCCGCTCGAGCT 61.511 57.895 32.88 16.32 39.32 4.09
5148 5982 2.170607 CTCATATTCGGAGGTTGTGGGT 59.829 50.000 0.00 0.00 0.00 4.51
5152 5986 1.122632 TTCGGAGGTTGTGGGTGCTA 61.123 55.000 0.00 0.00 0.00 3.49
5158 5992 3.153919 GAGGTTGTGGGTGCTAATTTCA 58.846 45.455 0.00 0.00 0.00 2.69
5171 6005 5.786311 TGCTAATTTCAAGCAAGCTTCATT 58.214 33.333 3.97 6.50 46.57 2.57
5176 6010 4.404507 TTCAAGCAAGCTTCATTCGTAC 57.595 40.909 3.97 0.00 33.42 3.67
5226 6064 1.110442 CCCAGGGCGCATAAAAATCA 58.890 50.000 10.83 0.00 0.00 2.57
5227 6065 1.688197 CCCAGGGCGCATAAAAATCAT 59.312 47.619 10.83 0.00 0.00 2.45
5235 6073 3.221771 CGCATAAAAATCATCCCCTGGA 58.778 45.455 0.00 0.00 35.55 3.86
5318 6158 4.155826 CACCGATATTGGCTCACTTTTCAA 59.844 41.667 9.11 0.00 0.00 2.69
5341 6181 2.021457 CCATTTCGGCGAATAAAGGGT 58.979 47.619 24.33 1.21 33.08 4.34
5349 6189 3.556213 CGGCGAATAAAGGGTCCATATGA 60.556 47.826 0.00 0.00 0.00 2.15
5533 6374 7.433708 AAAACTCATATTTCATCACACGTCA 57.566 32.000 0.00 0.00 0.00 4.35
5739 6580 0.811281 TCTTGCTCGCTCTCGATGAA 59.189 50.000 0.00 0.00 44.56 2.57
5767 6611 2.033801 GTGCAAGATGACACAGCAAGTT 59.966 45.455 0.00 0.00 36.91 2.66
5775 6619 8.671921 CAAGATGACACAGCAAGTTATAATCTT 58.328 33.333 0.00 0.00 32.39 2.40
5801 6645 2.762535 TTGATCTTTCGACCAGGTCC 57.237 50.000 14.46 0.00 0.00 4.46
5802 6646 0.530744 TGATCTTTCGACCAGGTCCG 59.469 55.000 14.46 9.34 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.189677 TCAAAATGGTCGTTTGGCTATAAG 57.810 37.500 0.00 0.00 36.75 1.73
16 17 2.890311 TGATCAAAATGGTCGTTTGGCT 59.110 40.909 0.00 0.00 36.75 4.75
18 19 4.503741 ACTGATCAAAATGGTCGTTTGG 57.496 40.909 0.00 0.00 36.75 3.28
38 39 3.575630 TCGTGTCATGAGCAGTTCTAAC 58.424 45.455 0.00 0.00 0.00 2.34
39 40 3.934457 TCGTGTCATGAGCAGTTCTAA 57.066 42.857 0.00 0.00 0.00 2.10
97 98 1.670295 TCGTACTATTTAGTGCCGCGA 59.330 47.619 8.23 3.39 35.82 5.87
108 109 7.866393 CCGAATCTAGGTTTTCATCGTACTATT 59.134 37.037 0.00 0.00 0.00 1.73
116 117 3.938963 TGCACCGAATCTAGGTTTTCATC 59.061 43.478 0.00 0.00 40.59 2.92
164 168 9.513906 TGGTGAATTATGTGAAGATTTAGTGAA 57.486 29.630 0.00 0.00 0.00 3.18
192 324 4.631234 TGGGATCACTAGGGTTCTGTATT 58.369 43.478 0.00 0.00 0.00 1.89
253 419 1.203440 AGTACCAGGTCTTGACCCCAT 60.203 52.381 15.44 4.68 0.00 4.00
254 420 0.192566 AGTACCAGGTCTTGACCCCA 59.807 55.000 15.44 0.00 0.00 4.96
255 421 0.903236 GAGTACCAGGTCTTGACCCC 59.097 60.000 15.44 0.67 0.00 4.95
256 422 0.903236 GGAGTACCAGGTCTTGACCC 59.097 60.000 15.44 1.09 35.97 4.46
257 423 0.903236 GGGAGTACCAGGTCTTGACC 59.097 60.000 11.59 11.59 39.85 4.02
258 424 1.640917 TGGGAGTACCAGGTCTTGAC 58.359 55.000 0.00 0.00 46.80 3.18
670 842 3.917300 AGGGTACTACAGATTGGGAGAG 58.083 50.000 0.00 0.00 0.00 3.20
713 904 2.272447 AAATGGGCCGGGTTCGTTG 61.272 57.895 2.18 0.00 33.95 4.10
730 921 1.178534 GCAGCCTGCTGGGTTTACAA 61.179 55.000 19.88 0.00 43.07 2.41
731 922 1.603455 GCAGCCTGCTGGGTTTACA 60.603 57.895 19.88 0.00 43.07 2.41
732 923 3.278157 GCAGCCTGCTGGGTTTAC 58.722 61.111 19.88 1.17 43.07 2.01
774 967 4.698625 ACGTTCTCCGGGCCTCCT 62.699 66.667 0.84 0.00 42.24 3.69
805 998 2.187163 GGGCCTAAGTCAGACGCC 59.813 66.667 0.84 8.34 38.96 5.68
842 1035 4.715523 AACCGGACCCACCATGCG 62.716 66.667 9.46 0.00 38.90 4.73
843 1036 2.750237 GAACCGGACCCACCATGC 60.750 66.667 9.46 0.00 38.90 4.06
844 1037 2.435938 CGAACCGGACCCACCATG 60.436 66.667 9.46 0.00 38.90 3.66
845 1038 2.926242 ACGAACCGGACCCACCAT 60.926 61.111 9.46 0.00 38.90 3.55
846 1039 3.618750 GACGAACCGGACCCACCA 61.619 66.667 9.46 0.00 38.90 4.17
847 1040 3.292500 GAGACGAACCGGACCCACC 62.293 68.421 9.46 0.00 0.00 4.61
848 1041 2.260743 GAGACGAACCGGACCCAC 59.739 66.667 9.46 0.00 0.00 4.61
849 1042 3.367743 CGAGACGAACCGGACCCA 61.368 66.667 9.46 0.00 0.00 4.51
850 1043 3.058160 TCGAGACGAACCGGACCC 61.058 66.667 9.46 0.00 31.06 4.46
851 1044 2.177778 GTCGAGACGAACCGGACC 59.822 66.667 9.46 0.00 37.72 4.46
888 1081 1.877165 GGAATTCGGTCCGAGTCGC 60.877 63.158 14.79 7.48 37.14 5.19
904 1097 2.530151 AGGAACTGCAGCTGGGGA 60.530 61.111 17.12 0.00 37.18 4.81
1130 1327 4.790861 GAAGGCGTCGTCGTCCCC 62.791 72.222 2.41 0.00 43.20 4.81
1390 1587 1.815421 CATAGCCTTGCCGTCGCTT 60.815 57.895 0.00 0.00 34.03 4.68
1407 1604 2.606519 CCTCACCCTCCCCGTTCA 60.607 66.667 0.00 0.00 0.00 3.18
1409 1606 2.606826 GTCCTCACCCTCCCCGTT 60.607 66.667 0.00 0.00 0.00 4.44
1468 1668 4.363990 CTCTGCCGCGACAGGTGT 62.364 66.667 22.49 0.00 38.26 4.16
1579 1779 1.080501 CTTGAGAGCGGCGTTCTCA 60.081 57.895 40.17 40.17 45.41 3.27
1654 1854 0.963355 GCGGCAAAGGGTACAATCCA 60.963 55.000 0.00 0.00 0.00 3.41
1674 1874 4.818863 CCGGGTGCATCCATGGCA 62.819 66.667 18.15 0.00 39.32 4.92
1819 2019 3.370527 GCAATCCAAGGAGGCTAACACTA 60.371 47.826 7.95 0.00 37.29 2.74
1861 2061 1.826054 CGCAGGAACCAAACACCCA 60.826 57.895 0.00 0.00 0.00 4.51
1969 2169 3.432051 GACACCATCTCGAGGCCCG 62.432 68.421 13.56 2.55 40.25 6.13
1989 2189 3.485463 ACTTCGAATCAACACCTTCCA 57.515 42.857 0.00 0.00 0.00 3.53
2014 2214 3.001736 GGAGCGTCTCACTTGAATTATGC 59.998 47.826 8.71 0.00 31.08 3.14
2056 2256 3.523157 TCTTGACATGCTTCCCATTCCTA 59.477 43.478 0.00 0.00 29.71 2.94
2090 2290 3.142951 CAACAACAGACCGGATAACCAA 58.857 45.455 9.46 0.00 35.59 3.67
2092 2292 1.467342 GCAACAACAGACCGGATAACC 59.533 52.381 9.46 0.00 0.00 2.85
2100 2300 0.861837 CTCACTCGCAACAACAGACC 59.138 55.000 0.00 0.00 0.00 3.85
2125 2325 1.010935 AGTGACACATGCGCGAAGAG 61.011 55.000 12.10 0.00 0.00 2.85
2507 2955 6.263392 TGTTGGCTAAGTTACTTGCAAACATA 59.737 34.615 24.50 12.79 36.97 2.29
2529 3024 4.020307 CCAGAAAATTGCCACCCTTATGTT 60.020 41.667 0.00 0.00 0.00 2.71
2530 3025 3.515104 CCAGAAAATTGCCACCCTTATGT 59.485 43.478 0.00 0.00 0.00 2.29
2531 3026 3.768757 TCCAGAAAATTGCCACCCTTATG 59.231 43.478 0.00 0.00 0.00 1.90
2532 3027 4.059773 TCCAGAAAATTGCCACCCTTAT 57.940 40.909 0.00 0.00 0.00 1.73
2533 3028 3.534357 TCCAGAAAATTGCCACCCTTA 57.466 42.857 0.00 0.00 0.00 2.69
2534 3029 2.397044 TCCAGAAAATTGCCACCCTT 57.603 45.000 0.00 0.00 0.00 3.95
2535 3030 2.397044 TTCCAGAAAATTGCCACCCT 57.603 45.000 0.00 0.00 0.00 4.34
2536 3031 3.701205 ATTTCCAGAAAATTGCCACCC 57.299 42.857 0.00 0.00 33.69 4.61
2537 3032 8.424133 AGATAATATTTCCAGAAAATTGCCACC 58.576 33.333 0.00 0.00 38.53 4.61
2546 3041 9.507329 GCATCCACTAGATAATATTTCCAGAAA 57.493 33.333 0.00 0.00 32.37 2.52
2547 3042 8.103305 GGCATCCACTAGATAATATTTCCAGAA 58.897 37.037 0.00 0.00 32.37 3.02
2548 3043 7.459125 AGGCATCCACTAGATAATATTTCCAGA 59.541 37.037 0.00 0.00 32.37 3.86
2549 3044 7.628234 AGGCATCCACTAGATAATATTTCCAG 58.372 38.462 0.00 0.00 32.37 3.86
2550 3045 7.459125 AGAGGCATCCACTAGATAATATTTCCA 59.541 37.037 0.00 0.00 32.37 3.53
2551 3046 7.768120 CAGAGGCATCCACTAGATAATATTTCC 59.232 40.741 0.00 0.00 32.37 3.13
2552 3047 8.317679 ACAGAGGCATCCACTAGATAATATTTC 58.682 37.037 0.00 0.00 32.37 2.17
2553 3048 8.212259 ACAGAGGCATCCACTAGATAATATTT 57.788 34.615 0.00 0.00 32.37 1.40
2554 3049 7.805083 ACAGAGGCATCCACTAGATAATATT 57.195 36.000 0.00 0.00 32.37 1.28
2555 3050 7.805083 AACAGAGGCATCCACTAGATAATAT 57.195 36.000 0.00 0.00 32.37 1.28
2556 3051 7.523873 CGAAACAGAGGCATCCACTAGATAATA 60.524 40.741 0.00 0.00 32.37 0.98
2557 3052 6.506538 AAACAGAGGCATCCACTAGATAAT 57.493 37.500 0.00 0.00 32.37 1.28
2558 3053 5.451937 CGAAACAGAGGCATCCACTAGATAA 60.452 44.000 0.00 0.00 32.37 1.75
2559 3054 4.038042 CGAAACAGAGGCATCCACTAGATA 59.962 45.833 0.00 0.00 32.37 1.98
2560 3055 3.181471 CGAAACAGAGGCATCCACTAGAT 60.181 47.826 0.00 0.00 34.66 1.98
2561 3056 2.166459 CGAAACAGAGGCATCCACTAGA 59.834 50.000 0.00 0.00 0.00 2.43
2562 3057 2.166459 TCGAAACAGAGGCATCCACTAG 59.834 50.000 0.00 0.00 0.00 2.57
2563 3058 2.176045 TCGAAACAGAGGCATCCACTA 58.824 47.619 0.00 0.00 0.00 2.74
2564 3059 0.976641 TCGAAACAGAGGCATCCACT 59.023 50.000 0.00 0.00 0.00 4.00
2565 3060 1.936547 GATCGAAACAGAGGCATCCAC 59.063 52.381 0.00 0.00 0.00 4.02
2566 3061 1.554617 TGATCGAAACAGAGGCATCCA 59.445 47.619 0.00 0.00 0.00 3.41
2567 3062 2.208431 CTGATCGAAACAGAGGCATCC 58.792 52.381 14.96 0.00 37.54 3.51
2568 3063 2.898705 ACTGATCGAAACAGAGGCATC 58.101 47.619 23.23 0.00 38.55 3.91
2569 3064 3.701542 TCTACTGATCGAAACAGAGGCAT 59.298 43.478 23.23 8.42 38.55 4.40
2570 3065 3.089284 TCTACTGATCGAAACAGAGGCA 58.911 45.455 23.23 9.20 38.55 4.75
2571 3066 3.119459 TGTCTACTGATCGAAACAGAGGC 60.119 47.826 23.23 17.91 38.55 4.70
2572 3067 4.703645 TGTCTACTGATCGAAACAGAGG 57.296 45.455 23.23 16.16 38.55 3.69
2573 3068 5.704888 AGTTGTCTACTGATCGAAACAGAG 58.295 41.667 23.23 16.84 38.55 3.35
2607 3102 7.156673 GCCTCGTTATCCATACTAAATGGTAA 58.843 38.462 4.06 0.95 40.06 2.85
2614 3109 4.763279 TGATCGCCTCGTTATCCATACTAA 59.237 41.667 0.00 0.00 0.00 2.24
2624 3121 1.069090 GCCCATGATCGCCTCGTTA 59.931 57.895 0.00 0.00 0.00 3.18
2626 3123 1.399744 TAAGCCCATGATCGCCTCGT 61.400 55.000 0.00 0.00 0.00 4.18
2641 3138 6.765989 TGACCAAGTGACATAACCATATAAGC 59.234 38.462 0.00 0.00 0.00 3.09
2765 3263 3.384668 ACATGCATACTGATACTGCGTC 58.615 45.455 0.00 0.00 38.75 5.19
2814 3312 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2815 3313 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2816 3314 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2817 3315 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2818 3316 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2819 3317 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2820 3318 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2826 3324 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2827 3325 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2828 3326 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2829 3327 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2830 3328 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2845 3343 9.669353 TCCGTAAAGTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 0.00 1.85
2847 3345 7.650903 CCTCCGTAAAGTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2850 3348 6.072286 TCCCTCCGTAAAGTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2851 3349 7.039853 ACTCCCTCCGTAAAGTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2853 3351 9.289782 GTACTCCCTCCGTAAAGTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2855 3353 8.995027 TGTACTCCCTCCGTAAAGTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
2857 3355 7.902920 TTGTACTCCCTCCGTAAAGTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
2859 3357 6.803366 ATTGTACTCCCTCCGTAAAGTAAT 57.197 37.500 0.00 0.00 0.00 1.89
2860 3358 7.902920 ATATTGTACTCCCTCCGTAAAGTAA 57.097 36.000 0.00 0.00 0.00 2.24
2861 3359 7.902920 AATATTGTACTCCCTCCGTAAAGTA 57.097 36.000 0.00 0.00 0.00 2.24
2862 3360 6.803366 AATATTGTACTCCCTCCGTAAAGT 57.197 37.500 0.00 0.00 0.00 2.66
2863 3361 7.949434 AGTAATATTGTACTCCCTCCGTAAAG 58.051 38.462 0.00 0.00 27.56 1.85
2866 3364 6.835488 ACAAGTAATATTGTACTCCCTCCGTA 59.165 38.462 0.00 0.00 41.53 4.02
3085 3626 9.093970 CATCACATATCTCAATGCAAACAATTT 57.906 29.630 0.00 0.00 0.00 1.82
3088 3629 7.030768 CACATCACATATCTCAATGCAAACAA 58.969 34.615 0.00 0.00 0.00 2.83
3093 3634 4.457466 AGCACATCACATATCTCAATGCA 58.543 39.130 0.00 0.00 32.99 3.96
3115 3656 7.875554 TGTAACTGTACAATTGCAAGTGAGATA 59.124 33.333 31.51 15.10 37.29 1.98
3120 3661 5.815850 TGTGTAACTGTACAATTGCAAGTG 58.184 37.500 24.24 24.24 41.89 3.16
3121 3662 6.039270 ACATGTGTAACTGTACAATTGCAAGT 59.961 34.615 9.40 6.40 41.89 3.16
3122 3663 6.437928 ACATGTGTAACTGTACAATTGCAAG 58.562 36.000 9.40 5.84 41.89 4.01
3123 3664 6.384258 ACATGTGTAACTGTACAATTGCAA 57.616 33.333 9.40 0.00 41.89 4.08
3124 3665 7.680442 ATACATGTGTAACTGTACAATTGCA 57.320 32.000 9.11 3.63 41.89 4.08
3125 3666 8.964420 AAATACATGTGTAACTGTACAATTGC 57.036 30.769 9.11 0.00 41.89 3.56
3158 3699 9.994432 CAAGCTACAATTCGATTTTCTAGAAAT 57.006 29.630 18.37 8.94 0.00 2.17
3159 3700 9.214957 TCAAGCTACAATTCGATTTTCTAGAAA 57.785 29.630 13.99 13.99 0.00 2.52
3160 3701 8.656849 GTCAAGCTACAATTCGATTTTCTAGAA 58.343 33.333 0.00 0.00 0.00 2.10
3161 3702 7.817478 TGTCAAGCTACAATTCGATTTTCTAGA 59.183 33.333 0.00 0.00 0.00 2.43
3162 3703 7.963981 TGTCAAGCTACAATTCGATTTTCTAG 58.036 34.615 0.00 0.00 0.00 2.43
3163 3704 7.899178 TGTCAAGCTACAATTCGATTTTCTA 57.101 32.000 0.00 0.00 0.00 2.10
3164 3705 6.801539 TGTCAAGCTACAATTCGATTTTCT 57.198 33.333 0.00 0.00 0.00 2.52
3165 3706 9.214953 CTAATGTCAAGCTACAATTCGATTTTC 57.785 33.333 0.00 0.00 32.02 2.29
3166 3707 8.184192 CCTAATGTCAAGCTACAATTCGATTTT 58.816 33.333 0.00 0.00 32.02 1.82
3167 3708 7.201732 CCCTAATGTCAAGCTACAATTCGATTT 60.202 37.037 0.00 0.00 32.02 2.17
3168 3709 6.260936 CCCTAATGTCAAGCTACAATTCGATT 59.739 38.462 0.00 0.00 32.02 3.34
3169 3710 5.760253 CCCTAATGTCAAGCTACAATTCGAT 59.240 40.000 0.00 0.00 32.02 3.59
3170 3711 5.105106 TCCCTAATGTCAAGCTACAATTCGA 60.105 40.000 0.00 0.00 32.02 3.71
3171 3712 5.116180 TCCCTAATGTCAAGCTACAATTCG 58.884 41.667 0.00 0.00 32.02 3.34
3172 3713 7.573968 AATCCCTAATGTCAAGCTACAATTC 57.426 36.000 0.00 0.00 32.02 2.17
3173 3714 7.961326 AAATCCCTAATGTCAAGCTACAATT 57.039 32.000 0.00 0.00 32.02 2.32
3174 3715 9.646522 AATAAATCCCTAATGTCAAGCTACAAT 57.353 29.630 0.00 0.00 32.02 2.71
3175 3716 9.120538 GAATAAATCCCTAATGTCAAGCTACAA 57.879 33.333 0.00 0.00 32.02 2.41
3176 3717 8.494433 AGAATAAATCCCTAATGTCAAGCTACA 58.506 33.333 0.00 0.00 0.00 2.74
3177 3718 8.910351 AGAATAAATCCCTAATGTCAAGCTAC 57.090 34.615 0.00 0.00 0.00 3.58
3178 3719 9.342308 CAAGAATAAATCCCTAATGTCAAGCTA 57.658 33.333 0.00 0.00 0.00 3.32
3179 3720 7.836183 ACAAGAATAAATCCCTAATGTCAAGCT 59.164 33.333 0.00 0.00 0.00 3.74
3180 3721 8.000780 ACAAGAATAAATCCCTAATGTCAAGC 57.999 34.615 0.00 0.00 0.00 4.01
3182 3723 9.627123 CCTACAAGAATAAATCCCTAATGTCAA 57.373 33.333 0.00 0.00 0.00 3.18
3183 3724 8.998814 TCCTACAAGAATAAATCCCTAATGTCA 58.001 33.333 0.00 0.00 0.00 3.58
3184 3725 9.847224 TTCCTACAAGAATAAATCCCTAATGTC 57.153 33.333 0.00 0.00 0.00 3.06
3195 3736 8.745590 GGCACCTATTTTTCCTACAAGAATAAA 58.254 33.333 0.00 0.00 0.00 1.40
3196 3737 7.891183 TGGCACCTATTTTTCCTACAAGAATAA 59.109 33.333 0.00 0.00 0.00 1.40
3197 3738 7.406916 TGGCACCTATTTTTCCTACAAGAATA 58.593 34.615 0.00 0.00 0.00 1.75
3198 3739 6.252995 TGGCACCTATTTTTCCTACAAGAAT 58.747 36.000 0.00 0.00 0.00 2.40
3199 3740 5.636123 TGGCACCTATTTTTCCTACAAGAA 58.364 37.500 0.00 0.00 0.00 2.52
3200 3741 5.249780 TGGCACCTATTTTTCCTACAAGA 57.750 39.130 0.00 0.00 0.00 3.02
3201 3742 5.888161 AGATGGCACCTATTTTTCCTACAAG 59.112 40.000 0.00 0.00 0.00 3.16
3202 3743 5.826643 AGATGGCACCTATTTTTCCTACAA 58.173 37.500 0.00 0.00 0.00 2.41
3203 3744 5.045213 TGAGATGGCACCTATTTTTCCTACA 60.045 40.000 0.00 0.00 0.00 2.74
3204 3745 5.437060 TGAGATGGCACCTATTTTTCCTAC 58.563 41.667 0.00 0.00 0.00 3.18
3205 3746 5.191722 ACTGAGATGGCACCTATTTTTCCTA 59.808 40.000 0.00 0.00 0.00 2.94
3206 3747 4.018050 ACTGAGATGGCACCTATTTTTCCT 60.018 41.667 0.00 0.00 0.00 3.36
3207 3748 4.273318 ACTGAGATGGCACCTATTTTTCC 58.727 43.478 0.00 0.00 0.00 3.13
3208 3749 5.644644 CAACTGAGATGGCACCTATTTTTC 58.355 41.667 0.00 0.00 0.00 2.29
3209 3750 4.082026 GCAACTGAGATGGCACCTATTTTT 60.082 41.667 0.00 0.00 0.00 1.94
3210 3751 3.445096 GCAACTGAGATGGCACCTATTTT 59.555 43.478 0.00 0.00 0.00 1.82
3211 3752 3.019564 GCAACTGAGATGGCACCTATTT 58.980 45.455 0.00 0.00 0.00 1.40
3212 3753 2.648059 GCAACTGAGATGGCACCTATT 58.352 47.619 0.00 0.00 0.00 1.73
3213 3754 1.133976 GGCAACTGAGATGGCACCTAT 60.134 52.381 11.31 0.00 42.45 2.57
3214 3755 0.253044 GGCAACTGAGATGGCACCTA 59.747 55.000 11.31 0.00 42.45 3.08
3215 3756 1.001641 GGCAACTGAGATGGCACCT 60.002 57.895 11.31 0.00 42.45 4.00
3216 3757 3.595819 GGCAACTGAGATGGCACC 58.404 61.111 11.31 0.00 42.45 5.01
3230 3771 5.860941 TTGAATTAAACTGGACAAAGGCA 57.139 34.783 0.00 0.00 0.00 4.75
3333 4146 7.665690 ACCATCAATGTTGTATGTTAAAAGCA 58.334 30.769 0.00 0.00 0.00 3.91
3354 4167 4.112634 ACCACAATAGTCCACAAACCAT 57.887 40.909 0.00 0.00 0.00 3.55
3387 4200 4.032672 CAGAGCTTTCATCAATGACGAGTC 59.967 45.833 0.00 0.00 36.36 3.36
3392 4205 4.934001 TCTGTCAGAGCTTTCATCAATGAC 59.066 41.667 0.00 0.00 36.36 3.06
3410 4234 3.644884 TTTCTTCCGTCAGACTCTGTC 57.355 47.619 5.94 0.00 32.61 3.51
3411 4235 3.132289 TGTTTTCTTCCGTCAGACTCTGT 59.868 43.478 5.94 0.00 32.61 3.41
3412 4236 3.491267 GTGTTTTCTTCCGTCAGACTCTG 59.509 47.826 0.00 0.00 0.00 3.35
3506 4331 6.655062 CACTACTAGAGCTTGAGAAGTATCG 58.345 44.000 0.00 0.00 0.00 2.92
3603 4428 2.573915 GGAGGAGGAGGAAATCAACAGT 59.426 50.000 0.00 0.00 0.00 3.55
3613 4438 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
3614 4439 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
3615 4440 1.541672 GGAGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
3616 4441 2.015726 GGGAGGAGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
3617 4442 1.598856 AAGGGAGGAGGAGGAGGAGG 61.599 65.000 0.00 0.00 0.00 4.30
3618 4443 0.341609 AAAGGGAGGAGGAGGAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
3619 4444 0.043334 CAAAGGGAGGAGGAGGAGGA 59.957 60.000 0.00 0.00 0.00 3.71
3620 4445 0.252927 ACAAAGGGAGGAGGAGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
3621 4446 2.552093 TACAAAGGGAGGAGGAGGAG 57.448 55.000 0.00 0.00 0.00 3.69
3622 4447 2.592512 AGATACAAAGGGAGGAGGAGGA 59.407 50.000 0.00 0.00 0.00 3.71
3623 4448 3.053359 AGATACAAAGGGAGGAGGAGG 57.947 52.381 0.00 0.00 0.00 4.30
3624 4449 5.069781 CAGTTAGATACAAAGGGAGGAGGAG 59.930 48.000 0.00 0.00 0.00 3.69
3674 4499 4.112634 AGAACCAACAGCCAAAGGATAA 57.887 40.909 0.00 0.00 0.00 1.75
3677 4502 2.031120 CAAGAACCAACAGCCAAAGGA 58.969 47.619 0.00 0.00 0.00 3.36
3807 4633 8.990163 ATACGGGGATACATTTGACTATTTTT 57.010 30.769 0.00 0.00 39.74 1.94
3808 4634 8.846211 CAATACGGGGATACATTTGACTATTTT 58.154 33.333 0.00 0.00 39.74 1.82
3828 4654 7.351981 TGTCATTTCTGAAAAGTGTCAATACG 58.648 34.615 6.95 0.00 31.85 3.06
3858 4684 6.592994 CAGTATCAGGGCAATACAGATACATG 59.407 42.308 11.90 0.00 42.00 3.21
3866 4692 4.560716 GCGTATCAGTATCAGGGCAATACA 60.561 45.833 6.67 0.00 33.00 2.29
3876 4702 4.737353 ACGAATACGCGTATCAGTATCA 57.263 40.909 30.32 3.30 43.61 2.15
3904 4730 3.495001 GGTTTCGCCAGAGTATAGATTGC 59.505 47.826 0.00 0.00 37.17 3.56
3912 4738 0.320374 CACTGGGTTTCGCCAGAGTA 59.680 55.000 13.02 0.00 39.65 2.59
3913 4739 1.071471 CACTGGGTTTCGCCAGAGT 59.929 57.895 13.02 0.00 39.65 3.24
3916 4742 1.600023 TTTACACTGGGTTTCGCCAG 58.400 50.000 5.37 5.37 39.65 4.85
3917 4743 2.054232 TTTTACACTGGGTTTCGCCA 57.946 45.000 0.00 0.00 39.65 5.69
3918 4744 2.554893 TCATTTTACACTGGGTTTCGCC 59.445 45.455 0.00 0.00 0.00 5.54
3919 4745 3.907894 TCATTTTACACTGGGTTTCGC 57.092 42.857 0.00 0.00 0.00 4.70
3920 4746 6.027749 GCTAATCATTTTACACTGGGTTTCG 58.972 40.000 0.00 0.00 0.00 3.46
4005 4832 2.952978 ACATACACAAAACCGGCAGAAA 59.047 40.909 0.00 0.00 0.00 2.52
4017 4844 4.382291 GGGTGTCACAACTACATACACAA 58.618 43.478 5.12 0.00 41.69 3.33
4103 4930 7.516198 AATGTCAAGCTACAATTCAGTTCTT 57.484 32.000 0.00 0.00 32.02 2.52
4105 4932 7.414540 CCCTAATGTCAAGCTACAATTCAGTTC 60.415 40.741 0.00 0.00 32.02 3.01
4169 4996 7.550196 ACAATTGAATTCAACTGTTCAAAAGCT 59.450 29.630 25.28 4.02 42.73 3.74
4384 5212 2.379972 CTTATCGGACTGACTGGAGGT 58.620 52.381 0.00 0.00 0.00 3.85
4399 5227 7.929941 AAATCCTTCTGTTCTTGACCTTATC 57.070 36.000 0.00 0.00 0.00 1.75
4438 5266 3.216800 ACGTTGAACCTTTTAGGGGAAC 58.783 45.455 0.00 0.00 40.58 3.62
4530 5358 0.833834 CCAGGACAGAGACCACCACT 60.834 60.000 0.00 0.00 0.00 4.00
4557 5385 0.532573 TTCCATCAGCGTCCACTCTC 59.467 55.000 0.00 0.00 0.00 3.20
4566 5394 2.753296 GAAGAGATCCTTCCATCAGCG 58.247 52.381 11.01 0.00 44.27 5.18
4904 5732 7.756722 CACAGAAGACTAGGGCATTAATTTTTG 59.243 37.037 0.00 0.00 0.00 2.44
4912 5740 4.036518 AGATCACAGAAGACTAGGGCATT 58.963 43.478 0.00 0.00 0.00 3.56
4943 5771 4.948847 ACTCGCATCAGTATCTTGCAATA 58.051 39.130 0.00 0.00 36.15 1.90
5036 5864 5.687285 GCTCAAAATCGCAATATTAGGGTTG 59.313 40.000 0.00 0.00 0.00 3.77
5037 5865 5.221244 GGCTCAAAATCGCAATATTAGGGTT 60.221 40.000 0.00 0.00 0.00 4.11
5067 5895 3.058639 GTCATGACTCTTGTTTGAGTGCC 60.059 47.826 18.83 0.00 46.11 5.01
5087 5915 2.420022 GCCAATATGATATGGGCGTGTC 59.580 50.000 14.75 0.00 37.19 3.67
5119 5953 1.609072 CTCCGAATATGAGGCTCACGA 59.391 52.381 21.37 11.54 0.00 4.35
5135 5969 0.035439 ATTAGCACCCACAACCTCCG 60.035 55.000 0.00 0.00 0.00 4.63
5141 5975 2.961741 TGCTTGAAATTAGCACCCACAA 59.038 40.909 0.00 0.00 43.30 3.33
5148 5982 4.852134 TGAAGCTTGCTTGAAATTAGCA 57.148 36.364 12.92 0.00 46.26 3.49
5152 5986 4.874970 ACGAATGAAGCTTGCTTGAAATT 58.125 34.783 12.92 9.32 0.00 1.82
5158 5992 5.182001 AGAATTGTACGAATGAAGCTTGCTT 59.818 36.000 2.10 7.65 0.00 3.91
5166 6000 7.981789 AGATGCTCTAAGAATTGTACGAATGAA 59.018 33.333 0.00 0.00 0.00 2.57
5171 6005 5.359860 TGGAGATGCTCTAAGAATTGTACGA 59.640 40.000 0.00 0.00 0.00 3.43
5176 6010 3.814283 GGCTGGAGATGCTCTAAGAATTG 59.186 47.826 0.00 0.00 0.00 2.32
5213 6051 2.288395 CCAGGGGATGATTTTTATGCGC 60.288 50.000 0.00 0.00 0.00 6.09
5288 6127 1.836391 CCAATATCGGTGCCTGGGA 59.164 57.895 0.00 0.00 0.00 4.37
5296 6136 3.950397 TGAAAAGTGAGCCAATATCGGT 58.050 40.909 0.00 0.00 0.00 4.69
5308 6148 2.625790 CCGAAATGGGGTTGAAAAGTGA 59.374 45.455 0.00 0.00 0.00 3.41
5341 6181 2.028112 GGCCTATTGTCGCTCATATGGA 60.028 50.000 2.13 0.00 0.00 3.41
5349 6189 2.612972 CGAATATGGGCCTATTGTCGCT 60.613 50.000 17.23 0.00 0.00 4.93
5509 6350 7.298122 GTGACGTGTGATGAAATATGAGTTTT 58.702 34.615 0.00 0.00 0.00 2.43
5739 6580 2.950975 TGTGTCATCTTGCACAACATGT 59.049 40.909 0.00 0.00 41.89 3.21
5767 6611 9.830975 TCGAAAGATCAAATGTGGAAGATTATA 57.169 29.630 0.00 0.00 33.31 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.