Multiple sequence alignment - TraesCS2A01G142500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G142500 chr2A 100.000 5527 0 0 1 5527 87886791 87881265 0.000000e+00 10207.0
1 TraesCS2A01G142500 chr2A 96.471 255 7 2 253 505 653300236 653300490 2.380000e-113 420.0
2 TraesCS2A01G142500 chr2A 96.078 255 8 2 253 505 722826988 722827242 1.110000e-111 414.0
3 TraesCS2A01G142500 chr2D 92.709 2647 127 27 1914 4495 87742244 87739599 0.000000e+00 3759.0
4 TraesCS2A01G142500 chr2D 96.871 831 22 3 4700 5527 87739076 87738247 0.000000e+00 1387.0
5 TraesCS2A01G142500 chr2D 82.155 919 65 38 1196 2057 87743025 87742149 0.000000e+00 697.0
6 TraesCS2A01G142500 chr2D 86.257 342 22 11 503 827 87743595 87743262 1.140000e-91 348.0
7 TraesCS2A01G142500 chr2D 90.667 150 9 4 108 253 87743813 87743665 1.570000e-45 195.0
8 TraesCS2A01G142500 chr2D 89.908 109 8 2 4468 4576 87739564 87739459 2.690000e-28 137.0
9 TraesCS2A01G142500 chr2D 94.000 50 3 0 4597 4646 87739404 87739355 5.940000e-10 76.8
10 TraesCS2A01G142500 chr2B 91.175 2765 145 50 1468 4151 140777861 140775115 0.000000e+00 3663.0
11 TraesCS2A01G142500 chr2B 95.444 834 30 5 4700 5527 140773231 140772400 0.000000e+00 1323.0
12 TraesCS2A01G142500 chr2B 89.316 468 19 13 4136 4576 140775078 140774615 4.840000e-155 558.0
13 TraesCS2A01G142500 chr2B 86.391 169 17 3 574 741 140778818 140778655 4.400000e-41 180.0
14 TraesCS2A01G142500 chr2B 79.783 277 26 19 830 1092 655811137 655811397 2.050000e-39 174.0
15 TraesCS2A01G142500 chr2B 78.799 283 29 17 836 1103 68800037 68799771 1.590000e-35 161.0
16 TraesCS2A01G142500 chr2B 86.093 151 9 6 108 253 140779067 140778924 9.590000e-33 152.0
17 TraesCS2A01G142500 chr2B 92.222 90 4 1 1968 2057 140777395 140777309 2.090000e-24 124.0
18 TraesCS2A01G142500 chr5A 96.471 255 6 3 253 505 300647763 300648016 8.560000e-113 418.0
19 TraesCS2A01G142500 chr4A 96.078 255 8 2 253 505 608002174 608002428 1.110000e-111 414.0
20 TraesCS2A01G142500 chr4A 79.791 287 26 20 830 1100 713057737 713058007 4.400000e-41 180.0
21 TraesCS2A01G142500 chr6A 94.424 269 13 2 253 519 538046075 538045807 3.980000e-111 412.0
22 TraesCS2A01G142500 chr3A 96.078 255 7 3 253 505 79443005 79442752 3.980000e-111 412.0
23 TraesCS2A01G142500 chr3A 95.349 258 10 2 253 508 65702672 65702415 5.150000e-110 409.0
24 TraesCS2A01G142500 chr3A 94.656 262 10 3 253 512 690072473 690072214 2.400000e-108 403.0
25 TraesCS2A01G142500 chr1A 94.677 263 11 3 253 512 49277957 49277695 6.670000e-109 405.0
26 TraesCS2A01G142500 chr1A 100.000 29 0 0 1303 1331 396297304 396297276 3.000000e-03 54.7
27 TraesCS2A01G142500 chr5B 80.357 280 30 18 836 1103 584284524 584284258 7.310000e-44 189.0
28 TraesCS2A01G142500 chr6B 80.882 272 21 18 836 1092 632223873 632223618 9.450000e-43 185.0
29 TraesCS2A01G142500 chr3B 79.926 269 29 16 836 1092 776986070 776985815 2.050000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G142500 chr2A 87881265 87886791 5526 True 10207.000000 10207 100.000000 1 5527 1 chr2A.!!$R1 5526
1 TraesCS2A01G142500 chr2D 87738247 87743813 5566 True 942.828571 3759 90.366714 108 5527 7 chr2D.!!$R1 5419
2 TraesCS2A01G142500 chr2B 140772400 140779067 6667 True 1000.000000 3663 90.106833 108 5527 6 chr2B.!!$R2 5419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 262 0.244450 CAATTGGGCGCACACAATCT 59.756 50.000 14.54 6.26 36.36 2.40 F
1134 1226 0.105709 GAGAGAGGGAGGGAGGGAAG 60.106 65.000 0.00 0.00 0.00 3.46 F
1523 1743 0.340208 TTCTCTCCCTTCTCCCTCCC 59.660 60.000 0.00 0.00 0.00 4.30 F
1576 1796 0.462759 CATCCCTTTCGGCAGAGTCC 60.463 60.000 0.00 0.00 0.00 3.85 F
1690 1918 0.746063 TTTGCTGGGTTTGCTGACTG 59.254 50.000 0.00 0.00 0.00 3.51 F
1737 1974 0.809636 ATGCGCGACGATTCATCCAA 60.810 50.000 12.10 0.00 0.00 3.53 F
1821 2067 1.216710 CGAGCAGGAGGACCAGAAC 59.783 63.158 0.00 0.00 38.94 3.01 F
2369 2679 1.217689 TCTTTATTGGCATCCCCCTGG 59.782 52.381 0.00 0.00 0.00 4.45 F
2377 2687 1.372683 CATCCCCCTGGCGAGTATG 59.627 63.158 0.00 0.00 0.00 2.39 F
4033 4391 0.251354 TGAGCAGGCAGGTGAAGATC 59.749 55.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1451 1560 0.036306 GGAAAGGAGAGTTGGGCGAA 59.964 55.000 0.00 0.0 0.00 4.70 R
2596 2925 0.819259 GCACTTGTGAGCCAGTCCAA 60.819 55.000 4.79 0.0 0.00 3.53 R
3222 3579 0.460987 ACACAGAGATAAGCCTGCGC 60.461 55.000 0.00 0.0 33.90 6.09 R
3457 3814 2.353357 TAGCATTTCAGAGCCCCATG 57.647 50.000 0.00 0.0 0.00 3.66 R
3541 3898 3.944422 ATCGACAATGGCGTTACAATC 57.056 42.857 8.85 0.0 0.00 2.67 R
3695 4053 5.006386 CCTGGCAGAGAACAAAATAGACTT 58.994 41.667 17.94 0.0 0.00 3.01 R
3783 4141 2.014857 TCTCCCATGTACTTCTCGACG 58.985 52.381 0.00 0.0 0.00 5.12 R
3970 4328 1.177401 GGAATTCCTGCACCTGGAAC 58.823 55.000 17.73 0.0 42.56 3.62 R
4114 4472 1.278172 CGTAATCTGCGCCATCGAGG 61.278 60.000 4.18 0.0 41.84 4.63 R
5294 7101 0.603569 CAAGCACCAGTACGACTCCT 59.396 55.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.433306 TTTCGAATCCCAACATGACCT 57.567 42.857 0.00 0.00 0.00 3.85
21 22 4.561500 TTTCGAATCCCAACATGACCTA 57.438 40.909 0.00 0.00 0.00 3.08
22 23 3.536956 TCGAATCCCAACATGACCTAC 57.463 47.619 0.00 0.00 0.00 3.18
23 24 2.835156 TCGAATCCCAACATGACCTACA 59.165 45.455 0.00 0.00 0.00 2.74
24 25 3.454447 TCGAATCCCAACATGACCTACAT 59.546 43.478 0.00 0.00 40.17 2.29
25 26 4.080582 TCGAATCCCAACATGACCTACATT 60.081 41.667 0.00 0.00 37.07 2.71
26 27 4.640201 CGAATCCCAACATGACCTACATTT 59.360 41.667 0.00 0.00 37.07 2.32
27 28 5.820423 CGAATCCCAACATGACCTACATTTA 59.180 40.000 0.00 0.00 37.07 1.40
28 29 6.486657 CGAATCCCAACATGACCTACATTTAT 59.513 38.462 0.00 0.00 37.07 1.40
29 30 7.013274 CGAATCCCAACATGACCTACATTTATT 59.987 37.037 0.00 0.00 37.07 1.40
30 31 8.608185 AATCCCAACATGACCTACATTTATTT 57.392 30.769 0.00 0.00 37.07 1.40
31 32 7.403312 TCCCAACATGACCTACATTTATTTG 57.597 36.000 0.00 0.00 37.07 2.32
32 33 6.042143 CCCAACATGACCTACATTTATTTGC 58.958 40.000 0.00 0.00 37.07 3.68
33 34 6.350864 CCCAACATGACCTACATTTATTTGCA 60.351 38.462 0.00 0.00 37.07 4.08
34 35 7.095910 CCAACATGACCTACATTTATTTGCAA 58.904 34.615 0.00 0.00 37.07 4.08
35 36 7.601886 CCAACATGACCTACATTTATTTGCAAA 59.398 33.333 15.44 15.44 37.07 3.68
36 37 8.986847 CAACATGACCTACATTTATTTGCAAAA 58.013 29.630 17.19 0.00 37.07 2.44
37 38 9.553064 AACATGACCTACATTTATTTGCAAAAA 57.447 25.926 17.19 7.39 37.07 1.94
57 58 1.745232 AAAAAGACACACGACCTGCA 58.255 45.000 0.00 0.00 0.00 4.41
58 59 1.967319 AAAAGACACACGACCTGCAT 58.033 45.000 0.00 0.00 0.00 3.96
59 60 1.967319 AAAGACACACGACCTGCATT 58.033 45.000 0.00 0.00 0.00 3.56
60 61 1.967319 AAGACACACGACCTGCATTT 58.033 45.000 0.00 0.00 0.00 2.32
61 62 2.831685 AGACACACGACCTGCATTTA 57.168 45.000 0.00 0.00 0.00 1.40
62 63 2.688507 AGACACACGACCTGCATTTAG 58.311 47.619 0.00 0.00 0.00 1.85
63 64 2.299013 AGACACACGACCTGCATTTAGA 59.701 45.455 0.00 0.00 0.00 2.10
64 65 3.064207 GACACACGACCTGCATTTAGAA 58.936 45.455 0.00 0.00 0.00 2.10
65 66 3.472652 ACACACGACCTGCATTTAGAAA 58.527 40.909 0.00 0.00 0.00 2.52
66 67 3.498397 ACACACGACCTGCATTTAGAAAG 59.502 43.478 0.00 0.00 0.00 2.62
67 68 3.074412 ACACGACCTGCATTTAGAAAGG 58.926 45.455 0.00 0.00 35.82 3.11
68 69 3.244422 ACACGACCTGCATTTAGAAAGGA 60.244 43.478 0.00 0.00 33.78 3.36
69 70 3.751175 CACGACCTGCATTTAGAAAGGAA 59.249 43.478 0.00 0.00 33.78 3.36
70 71 4.215399 CACGACCTGCATTTAGAAAGGAAA 59.785 41.667 0.00 0.00 33.78 3.13
71 72 4.455877 ACGACCTGCATTTAGAAAGGAAAG 59.544 41.667 0.00 0.00 33.78 2.62
72 73 4.695455 CGACCTGCATTTAGAAAGGAAAGA 59.305 41.667 0.00 0.00 33.78 2.52
73 74 5.181245 CGACCTGCATTTAGAAAGGAAAGAA 59.819 40.000 0.00 0.00 33.78 2.52
74 75 6.293955 CGACCTGCATTTAGAAAGGAAAGAAA 60.294 38.462 0.00 0.00 33.78 2.52
75 76 6.749139 ACCTGCATTTAGAAAGGAAAGAAAC 58.251 36.000 0.00 0.00 33.78 2.78
76 77 5.858581 CCTGCATTTAGAAAGGAAAGAAACG 59.141 40.000 0.00 0.00 30.92 3.60
77 78 6.293955 CCTGCATTTAGAAAGGAAAGAAACGA 60.294 38.462 0.00 0.00 30.92 3.85
78 79 7.033530 TGCATTTAGAAAGGAAAGAAACGAA 57.966 32.000 0.00 0.00 0.00 3.85
79 80 7.138736 TGCATTTAGAAAGGAAAGAAACGAAG 58.861 34.615 0.00 0.00 0.00 3.79
80 81 7.012894 TGCATTTAGAAAGGAAAGAAACGAAGA 59.987 33.333 0.00 0.00 0.00 2.87
81 82 7.535599 GCATTTAGAAAGGAAAGAAACGAAGAG 59.464 37.037 0.00 0.00 0.00 2.85
82 83 8.774586 CATTTAGAAAGGAAAGAAACGAAGAGA 58.225 33.333 0.00 0.00 0.00 3.10
83 84 7.710766 TTAGAAAGGAAAGAAACGAAGAGAC 57.289 36.000 0.00 0.00 0.00 3.36
84 85 5.671493 AGAAAGGAAAGAAACGAAGAGACA 58.329 37.500 0.00 0.00 0.00 3.41
85 86 6.113411 AGAAAGGAAAGAAACGAAGAGACAA 58.887 36.000 0.00 0.00 0.00 3.18
86 87 6.598064 AGAAAGGAAAGAAACGAAGAGACAAA 59.402 34.615 0.00 0.00 0.00 2.83
87 88 6.944234 AAGGAAAGAAACGAAGAGACAAAT 57.056 33.333 0.00 0.00 0.00 2.32
88 89 6.546972 AGGAAAGAAACGAAGAGACAAATC 57.453 37.500 0.00 0.00 0.00 2.17
89 90 6.055588 AGGAAAGAAACGAAGAGACAAATCA 58.944 36.000 0.00 0.00 0.00 2.57
90 91 6.542370 AGGAAAGAAACGAAGAGACAAATCAA 59.458 34.615 0.00 0.00 0.00 2.57
91 92 6.853362 GGAAAGAAACGAAGAGACAAATCAAG 59.147 38.462 0.00 0.00 0.00 3.02
92 93 7.254795 GGAAAGAAACGAAGAGACAAATCAAGA 60.255 37.037 0.00 0.00 0.00 3.02
93 94 7.736447 AAGAAACGAAGAGACAAATCAAGAT 57.264 32.000 0.00 0.00 0.00 2.40
94 95 7.126726 AGAAACGAAGAGACAAATCAAGATG 57.873 36.000 0.00 0.00 0.00 2.90
95 96 6.708054 AGAAACGAAGAGACAAATCAAGATGT 59.292 34.615 0.00 0.00 0.00 3.06
96 97 5.852738 ACGAAGAGACAAATCAAGATGTG 57.147 39.130 0.00 0.00 32.30 3.21
97 98 5.541845 ACGAAGAGACAAATCAAGATGTGA 58.458 37.500 7.22 0.00 41.67 3.58
98 99 5.991606 ACGAAGAGACAAATCAAGATGTGAA 59.008 36.000 7.22 0.00 40.50 3.18
99 100 6.652481 ACGAAGAGACAAATCAAGATGTGAAT 59.348 34.615 7.22 0.00 40.50 2.57
100 101 7.819415 ACGAAGAGACAAATCAAGATGTGAATA 59.181 33.333 7.22 0.00 40.50 1.75
101 102 8.659491 CGAAGAGACAAATCAAGATGTGAATAA 58.341 33.333 7.22 0.00 40.50 1.40
105 106 9.855361 GAGACAAATCAAGATGTGAATAATACG 57.145 33.333 7.22 0.00 40.50 3.06
106 107 8.830580 AGACAAATCAAGATGTGAATAATACGG 58.169 33.333 7.22 0.00 40.50 4.02
138 139 0.519175 CTTGTCGAAGCGCCAAATCG 60.519 55.000 2.29 10.07 37.90 3.34
174 178 3.058160 CAGAGGGCGGGCAAACAG 61.058 66.667 3.27 0.00 0.00 3.16
192 196 2.265739 GCAGACACGCCATCAGGA 59.734 61.111 0.00 0.00 36.89 3.86
244 253 1.576356 TTTGTTTGACAATTGGGCGC 58.424 45.000 10.83 0.00 38.00 6.53
253 262 0.244450 CAATTGGGCGCACACAATCT 59.756 50.000 14.54 6.26 36.36 2.40
254 263 0.527565 AATTGGGCGCACACAATCTC 59.472 50.000 14.54 0.00 36.36 2.75
255 264 1.315257 ATTGGGCGCACACAATCTCC 61.315 55.000 14.54 0.00 32.12 3.71
256 265 3.499737 GGGCGCACACAATCTCCG 61.500 66.667 10.83 0.00 0.00 4.63
257 266 3.499737 GGCGCACACAATCTCCGG 61.500 66.667 10.83 0.00 0.00 5.14
258 267 2.742372 GCGCACACAATCTCCGGT 60.742 61.111 0.30 0.00 0.00 5.28
259 268 2.740714 GCGCACACAATCTCCGGTC 61.741 63.158 0.30 0.00 0.00 4.79
260 269 2.100631 CGCACACAATCTCCGGTCC 61.101 63.158 0.00 0.00 0.00 4.46
261 270 1.296715 GCACACAATCTCCGGTCCT 59.703 57.895 0.00 0.00 0.00 3.85
263 272 1.882352 GCACACAATCTCCGGTCCTTT 60.882 52.381 0.00 0.00 0.00 3.11
265 274 2.484264 CACACAATCTCCGGTCCTTTTC 59.516 50.000 0.00 0.00 0.00 2.29
266 275 2.105821 ACACAATCTCCGGTCCTTTTCA 59.894 45.455 0.00 0.00 0.00 2.69
267 276 2.744202 CACAATCTCCGGTCCTTTTCAG 59.256 50.000 0.00 0.00 0.00 3.02
268 277 2.372172 ACAATCTCCGGTCCTTTTCAGT 59.628 45.455 0.00 0.00 0.00 3.41
269 278 3.181443 ACAATCTCCGGTCCTTTTCAGTT 60.181 43.478 0.00 0.00 0.00 3.16
270 279 2.833631 TCTCCGGTCCTTTTCAGTTC 57.166 50.000 0.00 0.00 0.00 3.01
271 280 1.000506 TCTCCGGTCCTTTTCAGTTCG 59.999 52.381 0.00 0.00 0.00 3.95
272 281 0.601841 TCCGGTCCTTTTCAGTTCGC 60.602 55.000 0.00 0.00 0.00 4.70
273 282 0.882927 CCGGTCCTTTTCAGTTCGCA 60.883 55.000 0.00 0.00 0.00 5.10
274 283 1.156736 CGGTCCTTTTCAGTTCGCAT 58.843 50.000 0.00 0.00 0.00 4.73
276 285 2.936498 CGGTCCTTTTCAGTTCGCATAT 59.064 45.455 0.00 0.00 0.00 1.78
277 286 4.116961 CGGTCCTTTTCAGTTCGCATATA 58.883 43.478 0.00 0.00 0.00 0.86
279 288 5.276868 CGGTCCTTTTCAGTTCGCATATAAG 60.277 44.000 0.00 0.00 0.00 1.73
281 290 6.483640 GGTCCTTTTCAGTTCGCATATAAGAT 59.516 38.462 0.00 0.00 0.00 2.40
282 291 7.012421 GGTCCTTTTCAGTTCGCATATAAGATT 59.988 37.037 0.00 0.00 0.00 2.40
283 292 8.398665 GTCCTTTTCAGTTCGCATATAAGATTT 58.601 33.333 0.00 0.00 0.00 2.17
284 293 8.397906 TCCTTTTCAGTTCGCATATAAGATTTG 58.602 33.333 0.00 0.00 0.00 2.32
286 295 9.214953 CTTTTCAGTTCGCATATAAGATTTGAC 57.785 33.333 0.00 0.00 0.00 3.18
287 296 8.492673 TTTCAGTTCGCATATAAGATTTGACT 57.507 30.769 0.00 0.00 0.00 3.41
288 297 7.468922 TCAGTTCGCATATAAGATTTGACTG 57.531 36.000 0.00 0.00 0.00 3.51
291 300 8.060679 CAGTTCGCATATAAGATTTGACTGAAG 58.939 37.037 0.00 0.00 0.00 3.02
292 301 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
293 302 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
302 311 3.896317 GACTGAAGTCAAGCCTCGT 57.104 52.632 5.58 0.00 44.18 4.18
304 313 3.299340 GACTGAAGTCAAGCCTCGTAA 57.701 47.619 5.58 0.00 44.18 3.18
306 315 3.654414 ACTGAAGTCAAGCCTCGTAAAG 58.346 45.455 0.00 0.00 0.00 1.85
307 316 3.069729 ACTGAAGTCAAGCCTCGTAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
309 318 4.448210 TGAAGTCAAGCCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
310 319 5.603596 TGAAGTCAAGCCTCGTAAAGTTTA 58.396 37.500 0.00 0.00 0.00 2.01
311 320 6.050432 TGAAGTCAAGCCTCGTAAAGTTTAA 58.950 36.000 0.00 0.00 0.00 1.52
312 321 5.919272 AGTCAAGCCTCGTAAAGTTTAAC 57.081 39.130 0.00 0.00 0.00 2.01
314 323 4.512571 GTCAAGCCTCGTAAAGTTTAACCA 59.487 41.667 0.00 0.00 0.00 3.67
316 325 5.007921 TCAAGCCTCGTAAAGTTTAACCAAC 59.992 40.000 0.00 0.00 35.32 3.77
351 360 9.829507 AAAAATACCAACATTCACAATCTGAAA 57.170 25.926 0.00 0.00 42.37 2.69
353 362 9.643693 AAATACCAACATTCACAATCTGAAATC 57.356 29.630 0.00 0.00 42.37 2.17
354 363 6.653526 ACCAACATTCACAATCTGAAATCA 57.346 33.333 0.00 0.00 42.37 2.57
355 364 7.053316 ACCAACATTCACAATCTGAAATCAA 57.947 32.000 0.00 0.00 42.37 2.57
356 365 7.673180 ACCAACATTCACAATCTGAAATCAAT 58.327 30.769 0.00 0.00 42.37 2.57
357 366 8.805175 ACCAACATTCACAATCTGAAATCAATA 58.195 29.630 0.00 0.00 42.37 1.90
358 367 9.811995 CCAACATTCACAATCTGAAATCAATAT 57.188 29.630 0.00 0.00 42.37 1.28
383 392 9.896645 ATCAATAGATGTGTCATGACTTAAAGT 57.103 29.630 25.55 9.39 31.91 2.66
384 393 9.725019 TCAATAGATGTGTCATGACTTAAAGTT 57.275 29.630 25.55 10.34 0.00 2.66
387 396 9.725019 ATAGATGTGTCATGACTTAAAGTTTCA 57.275 29.630 25.55 11.05 0.00 2.69
388 397 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
389 398 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
408 417 9.665264 GTTTCATATTGTATAACTTTAGCTGGC 57.335 33.333 0.00 0.00 0.00 4.85
409 418 8.972458 TTCATATTGTATAACTTTAGCTGGCA 57.028 30.769 0.00 0.00 0.00 4.92
410 419 8.607441 TCATATTGTATAACTTTAGCTGGCAG 57.393 34.615 10.94 10.94 0.00 4.85
411 420 8.428852 TCATATTGTATAACTTTAGCTGGCAGA 58.571 33.333 20.86 0.00 0.00 4.26
412 421 9.224267 CATATTGTATAACTTTAGCTGGCAGAT 57.776 33.333 20.86 16.07 0.00 2.90
413 422 9.799106 ATATTGTATAACTTTAGCTGGCAGATT 57.201 29.630 20.86 7.99 0.00 2.40
415 424 9.799106 ATTGTATAACTTTAGCTGGCAGATTAT 57.201 29.630 20.86 8.88 0.00 1.28
416 425 8.607441 TGTATAACTTTAGCTGGCAGATTATG 57.393 34.615 20.86 10.93 0.00 1.90
417 426 8.428852 TGTATAACTTTAGCTGGCAGATTATGA 58.571 33.333 20.86 0.00 0.00 2.15
418 427 9.442047 GTATAACTTTAGCTGGCAGATTATGAT 57.558 33.333 20.86 5.68 0.00 2.45
421 430 8.930846 AACTTTAGCTGGCAGATTATGATATT 57.069 30.769 20.86 0.00 0.00 1.28
422 431 8.930846 ACTTTAGCTGGCAGATTATGATATTT 57.069 30.769 20.86 0.00 0.00 1.40
423 432 9.359653 ACTTTAGCTGGCAGATTATGATATTTT 57.640 29.630 20.86 0.00 0.00 1.82
451 460 9.491675 TCTTATAAATACGGTCAAACTTTGTGA 57.508 29.630 1.44 0.00 0.00 3.58
468 477 8.561738 ACTTTGTGAAGTTTGACTTTAGAGAA 57.438 30.769 0.00 0.00 43.48 2.87
469 478 9.178758 ACTTTGTGAAGTTTGACTTTAGAGAAT 57.821 29.630 0.00 0.00 43.48 2.40
472 481 8.964476 TGTGAAGTTTGACTTTAGAGAATTCT 57.036 30.769 7.95 7.95 38.80 2.40
484 493 9.487790 ACTTTAGAGAATTCTAATATGCAGAGC 57.512 33.333 8.25 0.00 43.53 4.09
485 494 9.486497 CTTTAGAGAATTCTAATATGCAGAGCA 57.514 33.333 8.25 0.00 43.53 4.26
486 495 9.836864 TTTAGAGAATTCTAATATGCAGAGCAA 57.163 29.630 8.25 0.00 43.53 3.91
487 496 9.836864 TTAGAGAATTCTAATATGCAGAGCAAA 57.163 29.630 8.25 0.00 40.19 3.68
488 497 8.743085 AGAGAATTCTAATATGCAGAGCAAAA 57.257 30.769 8.25 0.00 43.62 2.44
489 498 9.182214 AGAGAATTCTAATATGCAGAGCAAAAA 57.818 29.630 8.25 0.00 43.62 1.94
490 499 9.448294 GAGAATTCTAATATGCAGAGCAAAAAG 57.552 33.333 8.25 0.00 43.62 2.27
491 500 8.411683 AGAATTCTAATATGCAGAGCAAAAAGG 58.588 33.333 6.06 0.00 43.62 3.11
492 501 7.886629 ATTCTAATATGCAGAGCAAAAAGGA 57.113 32.000 0.00 0.00 43.62 3.36
493 502 6.683974 TCTAATATGCAGAGCAAAAAGGAC 57.316 37.500 0.00 0.00 43.62 3.85
494 503 4.725790 AATATGCAGAGCAAAAAGGACC 57.274 40.909 0.00 0.00 43.62 4.46
495 504 0.883833 ATGCAGAGCAAAAAGGACCG 59.116 50.000 0.00 0.00 43.62 4.79
496 505 1.172180 TGCAGAGCAAAAAGGACCGG 61.172 55.000 0.00 0.00 34.76 5.28
497 506 0.889186 GCAGAGCAAAAAGGACCGGA 60.889 55.000 9.46 0.00 0.00 5.14
498 507 1.160137 CAGAGCAAAAAGGACCGGAG 58.840 55.000 9.46 0.00 0.00 4.63
516 525 3.610911 GGAGGGAGTAAATCACAACCTG 58.389 50.000 0.00 0.00 36.13 4.00
538 547 2.904866 TGGAACAACTGGTGCGCC 60.905 61.111 10.11 10.11 31.92 6.53
545 554 3.832237 AACTGGTGCGCCTGGACTG 62.832 63.158 24.85 7.98 37.95 3.51
554 563 2.490217 CCTGGACTGGTCGCGTAG 59.510 66.667 5.77 6.11 0.00 3.51
555 564 2.341101 CCTGGACTGGTCGCGTAGT 61.341 63.158 5.77 9.62 0.00 2.73
556 565 1.028330 CCTGGACTGGTCGCGTAGTA 61.028 60.000 5.77 0.00 0.00 1.82
598 611 5.049612 CGACATTTGGAGAAGGATGATGATG 60.050 44.000 0.00 0.00 0.00 3.07
599 612 6.009908 ACATTTGGAGAAGGATGATGATGA 57.990 37.500 0.00 0.00 0.00 2.92
600 613 6.062749 ACATTTGGAGAAGGATGATGATGAG 58.937 40.000 0.00 0.00 0.00 2.90
697 713 1.620822 AGCCTGATGAAACCGCTTTT 58.379 45.000 0.00 0.00 0.00 2.27
700 716 2.545742 GCCTGATGAAACCGCTTTTTGT 60.546 45.455 0.00 0.00 0.00 2.83
701 717 3.716601 CCTGATGAAACCGCTTTTTGTT 58.283 40.909 0.00 0.00 0.00 2.83
704 720 4.109050 TGATGAAACCGCTTTTTGTTCAC 58.891 39.130 0.00 0.00 0.00 3.18
747 771 1.849116 GGCACCATCATCCATCCCT 59.151 57.895 0.00 0.00 0.00 4.20
750 774 1.684983 GCACCATCATCCATCCCTTTG 59.315 52.381 0.00 0.00 0.00 2.77
756 780 3.558608 TCATCCATCCCTTTGGGTTTT 57.441 42.857 2.25 0.00 44.74 2.43
794 820 3.735720 TTGATTGACATCACCCATCCA 57.264 42.857 0.00 0.00 39.28 3.41
806 832 4.340617 TCACCCATCCACTTGGTTTAATC 58.659 43.478 0.00 0.00 34.77 1.75
807 833 3.128589 CACCCATCCACTTGGTTTAATCG 59.871 47.826 0.00 0.00 34.77 3.34
808 834 3.009695 ACCCATCCACTTGGTTTAATCGA 59.990 43.478 0.00 0.00 34.77 3.59
884 928 1.008538 CACTTTGTGCGTCAAGGGC 60.009 57.895 8.03 0.00 37.43 5.19
885 929 1.152963 ACTTTGTGCGTCAAGGGCT 60.153 52.632 8.03 0.00 37.43 5.19
886 930 1.166531 ACTTTGTGCGTCAAGGGCTC 61.167 55.000 8.03 0.00 37.43 4.70
918 962 2.436646 CCGCGCTCACTCCCAATT 60.437 61.111 5.56 0.00 0.00 2.32
919 963 2.040544 CCGCGCTCACTCCCAATTT 61.041 57.895 5.56 0.00 0.00 1.82
920 964 1.425428 CGCGCTCACTCCCAATTTC 59.575 57.895 5.56 0.00 0.00 2.17
921 965 1.803289 GCGCTCACTCCCAATTTCC 59.197 57.895 0.00 0.00 0.00 3.13
922 966 0.678048 GCGCTCACTCCCAATTTCCT 60.678 55.000 0.00 0.00 0.00 3.36
945 989 7.444183 TCCTAATTCCTCCGCATTAACTAATTG 59.556 37.037 0.00 0.00 0.00 2.32
946 990 7.444183 CCTAATTCCTCCGCATTAACTAATTGA 59.556 37.037 0.00 0.00 0.00 2.57
947 991 6.867662 ATTCCTCCGCATTAACTAATTGAG 57.132 37.500 0.00 0.00 0.00 3.02
948 992 4.127171 TCCTCCGCATTAACTAATTGAGC 58.873 43.478 0.00 0.00 0.00 4.26
950 994 5.069914 TCCTCCGCATTAACTAATTGAGCTA 59.930 40.000 0.00 0.00 0.00 3.32
951 995 5.758296 CCTCCGCATTAACTAATTGAGCTAA 59.242 40.000 0.00 0.00 0.00 3.09
952 996 6.428159 CCTCCGCATTAACTAATTGAGCTAAT 59.572 38.462 0.00 0.00 0.00 1.73
978 1050 2.126189 CTTCCCCGTCGGTCGTTC 60.126 66.667 11.06 0.00 37.94 3.95
979 1051 2.911509 TTCCCCGTCGGTCGTTCA 60.912 61.111 11.06 0.00 37.94 3.18
981 1053 3.980989 CCCCGTCGGTCGTTCACA 61.981 66.667 11.06 0.00 37.94 3.58
982 1054 2.732094 CCCGTCGGTCGTTCACAC 60.732 66.667 11.06 0.00 37.94 3.82
983 1055 2.732094 CCGTCGGTCGTTCACACC 60.732 66.667 2.08 0.00 37.94 4.16
984 1056 2.732094 CGTCGGTCGTTCACACCC 60.732 66.667 0.00 0.00 34.52 4.61
986 1058 1.068585 GTCGGTCGTTCACACCCTT 59.931 57.895 0.00 0.00 0.00 3.95
987 1059 0.531311 GTCGGTCGTTCACACCCTTT 60.531 55.000 0.00 0.00 0.00 3.11
989 1061 1.554042 CGGTCGTTCACACCCTTTCG 61.554 60.000 0.00 0.00 0.00 3.46
992 1069 0.595567 TCGTTCACACCCTTTCGTCG 60.596 55.000 0.00 0.00 0.00 5.12
1019 1098 3.735591 TCAAACTCTAAACCCGTTCCTG 58.264 45.455 0.00 0.00 0.00 3.86
1045 1129 4.946772 CCATTCCCTTCTCCTTTCTTCTTC 59.053 45.833 0.00 0.00 0.00 2.87
1071 1163 1.219522 AAAACCCGAGCTCGTTCGTG 61.220 55.000 32.41 17.67 38.88 4.35
1088 1180 1.688735 CGTGCTCCATTATCTCCCTCA 59.311 52.381 0.00 0.00 0.00 3.86
1089 1181 2.546795 CGTGCTCCATTATCTCCCTCAC 60.547 54.545 0.00 0.00 0.00 3.51
1090 1182 2.703007 GTGCTCCATTATCTCCCTCACT 59.297 50.000 0.00 0.00 0.00 3.41
1091 1183 2.968574 TGCTCCATTATCTCCCTCACTC 59.031 50.000 0.00 0.00 0.00 3.51
1092 1184 3.238597 GCTCCATTATCTCCCTCACTCT 58.761 50.000 0.00 0.00 0.00 3.24
1093 1185 3.645687 GCTCCATTATCTCCCTCACTCTT 59.354 47.826 0.00 0.00 0.00 2.85
1094 1186 4.835615 GCTCCATTATCTCCCTCACTCTTA 59.164 45.833 0.00 0.00 0.00 2.10
1095 1187 5.279256 GCTCCATTATCTCCCTCACTCTTAC 60.279 48.000 0.00 0.00 0.00 2.34
1096 1188 6.031964 TCCATTATCTCCCTCACTCTTACT 57.968 41.667 0.00 0.00 0.00 2.24
1097 1189 7.162973 TCCATTATCTCCCTCACTCTTACTA 57.837 40.000 0.00 0.00 0.00 1.82
1098 1190 7.770662 TCCATTATCTCCCTCACTCTTACTAT 58.229 38.462 0.00 0.00 0.00 2.12
1099 1191 8.901841 TCCATTATCTCCCTCACTCTTACTATA 58.098 37.037 0.00 0.00 0.00 1.31
1100 1192 9.535170 CCATTATCTCCCTCACTCTTACTATAA 57.465 37.037 0.00 0.00 0.00 0.98
1123 1215 5.832539 ATTAGAGAGAGAGAGAGAGAGGG 57.167 47.826 0.00 0.00 0.00 4.30
1124 1216 3.421394 AGAGAGAGAGAGAGAGAGGGA 57.579 52.381 0.00 0.00 0.00 4.20
1125 1217 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
1126 1218 2.370189 GAGAGAGAGAGAGAGAGGGAGG 59.630 59.091 0.00 0.00 0.00 4.30
1127 1219 1.421646 GAGAGAGAGAGAGAGGGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
1128 1220 1.010793 AGAGAGAGAGAGAGGGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
1129 1221 1.421646 GAGAGAGAGAGAGGGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
1130 1222 0.478507 GAGAGAGAGAGGGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
1131 1223 0.998945 AGAGAGAGAGGGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
1132 1224 0.996762 GAGAGAGAGGGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
1133 1225 0.556380 AGAGAGAGGGAGGGAGGGAA 60.556 60.000 0.00 0.00 0.00 3.97
1134 1226 0.105709 GAGAGAGGGAGGGAGGGAAG 60.106 65.000 0.00 0.00 0.00 3.46
1135 1227 1.764454 GAGAGGGAGGGAGGGAAGC 60.764 68.421 0.00 0.00 0.00 3.86
1136 1228 2.250635 GAGAGGGAGGGAGGGAAGCT 62.251 65.000 0.00 0.00 0.00 3.74
1137 1229 2.041928 AGGGAGGGAGGGAAGCTG 59.958 66.667 0.00 0.00 0.00 4.24
1138 1230 3.093172 GGGAGGGAGGGAAGCTGG 61.093 72.222 0.00 0.00 0.00 4.85
1139 1231 3.093172 GGAGGGAGGGAAGCTGGG 61.093 72.222 0.00 0.00 0.00 4.45
1140 1232 2.041265 GAGGGAGGGAAGCTGGGA 59.959 66.667 0.00 0.00 0.00 4.37
1141 1233 2.041928 AGGGAGGGAAGCTGGGAG 59.958 66.667 0.00 0.00 0.00 4.30
1142 1234 3.803162 GGGAGGGAAGCTGGGAGC 61.803 72.222 0.00 0.00 42.84 4.70
1158 1250 3.918220 GCGATTCCTGCTGACGCG 61.918 66.667 3.53 3.53 39.90 6.01
1173 1265 4.687215 GCGCCAGCTGAGGTGTGA 62.687 66.667 17.39 0.00 41.26 3.58
1181 1278 2.122413 TGAGGTGTGAGGGGCTGT 60.122 61.111 0.00 0.00 0.00 4.40
1187 1284 3.050275 GTGAGGGGCTGTTCGTGC 61.050 66.667 0.00 0.00 0.00 5.34
1193 1290 4.012895 GGCTGTTCGTGCCGTGTG 62.013 66.667 0.00 0.00 41.03 3.82
1194 1291 2.964925 GCTGTTCGTGCCGTGTGA 60.965 61.111 0.00 0.00 0.00 3.58
1242 1339 1.014564 CCTTTTCGCGTGGTCTCTCC 61.015 60.000 5.77 0.00 0.00 3.71
1244 1341 1.750341 TTTTCGCGTGGTCTCTCCCA 61.750 55.000 5.77 0.00 34.77 4.37
1245 1342 2.154798 TTTCGCGTGGTCTCTCCCAG 62.155 60.000 5.77 0.00 34.43 4.45
1258 1355 1.537397 TCCCAGAGCTGCCTGTCTT 60.537 57.895 14.25 0.00 32.43 3.01
1259 1356 1.376942 CCCAGAGCTGCCTGTCTTG 60.377 63.158 14.25 0.85 32.43 3.02
1260 1357 1.374190 CCAGAGCTGCCTGTCTTGT 59.626 57.895 14.25 0.00 32.43 3.16
1261 1358 0.954449 CCAGAGCTGCCTGTCTTGTG 60.954 60.000 14.25 0.00 32.43 3.33
1262 1359 1.302351 AGAGCTGCCTGTCTTGTGC 60.302 57.895 0.00 0.00 0.00 4.57
1264 1361 3.730761 GCTGCCTGTCTTGTGCGG 61.731 66.667 0.00 0.00 34.48 5.69
1265 1362 3.730761 CTGCCTGTCTTGTGCGGC 61.731 66.667 0.00 0.00 42.78 6.53
1291 1388 1.203287 GAAGCAAAATCTCACCTGGGC 59.797 52.381 0.00 0.00 0.00 5.36
1311 1408 2.776913 CGTCTTCCTCCTCCGCCTC 61.777 68.421 0.00 0.00 0.00 4.70
1312 1409 2.042843 TCTTCCTCCTCCGCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
1313 1410 2.042435 CTTCCTCCTCCGCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
1314 1411 2.364317 TTCCTCCTCCGCCTCCTG 60.364 66.667 0.00 0.00 0.00 3.86
1317 1414 3.535962 CTCCTCCGCCTCCTGCTC 61.536 72.222 0.00 0.00 38.05 4.26
1320 1417 3.847602 CTCCGCCTCCTGCTCCTG 61.848 72.222 0.00 0.00 38.05 3.86
1323 1420 4.527583 CGCCTCCTGCTCCTGCTC 62.528 72.222 0.00 0.00 40.48 4.26
1324 1421 4.173924 GCCTCCTGCTCCTGCTCC 62.174 72.222 0.00 0.00 40.48 4.70
1325 1422 2.365370 CCTCCTGCTCCTGCTCCT 60.365 66.667 0.00 0.00 40.48 3.69
1326 1423 2.733669 CCTCCTGCTCCTGCTCCTG 61.734 68.421 0.00 0.00 40.48 3.86
1327 1424 3.388703 CTCCTGCTCCTGCTCCTGC 62.389 68.421 0.00 0.00 40.48 4.85
1328 1425 3.400928 CCTGCTCCTGCTCCTGCT 61.401 66.667 0.00 0.00 40.48 4.24
1329 1426 2.187424 CTGCTCCTGCTCCTGCTC 59.813 66.667 0.00 0.00 40.48 4.26
1330 1427 3.388703 CTGCTCCTGCTCCTGCTCC 62.389 68.421 0.00 0.00 40.48 4.70
1331 1428 3.397439 GCTCCTGCTCCTGCTCCA 61.397 66.667 0.00 0.00 40.48 3.86
1332 1429 2.964310 GCTCCTGCTCCTGCTCCAA 61.964 63.158 0.00 0.00 40.48 3.53
1333 1430 1.078567 CTCCTGCTCCTGCTCCAAC 60.079 63.158 0.00 0.00 40.48 3.77
1363 1465 2.978018 CTTTGGGTTCTTCGCCGCC 61.978 63.158 0.00 0.00 0.00 6.13
1406 1508 0.672401 GGTTCCTGATTTCGTGCCGA 60.672 55.000 0.00 0.00 0.00 5.54
1408 1510 0.391130 TTCCTGATTTCGTGCCGAGG 60.391 55.000 0.00 0.00 37.14 4.63
1410 1512 1.448540 CTGATTTCGTGCCGAGGCT 60.449 57.895 15.75 0.00 42.51 4.58
1439 1545 4.236416 ATTCGCGCCGGCATTTCG 62.236 61.111 28.98 22.29 39.92 3.46
1458 1567 4.388499 GGGAACGCTCTTCGCCCA 62.388 66.667 0.00 0.00 43.23 5.36
1459 1568 2.358247 GGAACGCTCTTCGCCCAA 60.358 61.111 0.00 0.00 43.23 4.12
1465 1574 1.448717 GCTCTTCGCCCAACTCTCC 60.449 63.158 0.00 0.00 0.00 3.71
1466 1575 1.893919 GCTCTTCGCCCAACTCTCCT 61.894 60.000 0.00 0.00 0.00 3.69
1514 1734 2.689034 CCGGGGCTTCTCTCCCTT 60.689 66.667 0.00 0.00 43.41 3.95
1516 1736 1.687493 CGGGGCTTCTCTCCCTTCT 60.687 63.158 0.00 0.00 43.41 2.85
1521 1741 1.119684 GCTTCTCTCCCTTCTCCCTC 58.880 60.000 0.00 0.00 0.00 4.30
1523 1743 0.340208 TTCTCTCCCTTCTCCCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
1524 1744 1.074850 CTCTCCCTTCTCCCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
1576 1796 0.462759 CATCCCTTTCGGCAGAGTCC 60.463 60.000 0.00 0.00 0.00 3.85
1606 1827 8.196771 TGCTTTTCTTTTCTTGAAATTAGCAGA 58.803 29.630 9.90 0.00 39.88 4.26
1607 1828 8.697960 GCTTTTCTTTTCTTGAAATTAGCAGAG 58.302 33.333 0.00 0.00 37.29 3.35
1609 1830 9.736023 TTTTCTTTTCTTGAAATTAGCAGAGTC 57.264 29.630 0.00 0.00 34.04 3.36
1610 1831 8.682936 TTCTTTTCTTGAAATTAGCAGAGTCT 57.317 30.769 0.00 0.00 0.00 3.24
1611 1832 8.682936 TCTTTTCTTGAAATTAGCAGAGTCTT 57.317 30.769 0.00 0.00 0.00 3.01
1612 1833 9.778741 TCTTTTCTTGAAATTAGCAGAGTCTTA 57.221 29.630 0.00 0.00 0.00 2.10
1629 1850 5.763355 AGTCTTAGGTGCTGGTATGTACTA 58.237 41.667 0.00 0.00 0.00 1.82
1644 1865 9.793252 TGGTATGTACTATTACGAGTTCTTTTC 57.207 33.333 0.00 0.00 0.00 2.29
1656 1877 9.563898 TTACGAGTTCTTTTCCTTTTTCTTTTC 57.436 29.630 0.00 0.00 0.00 2.29
1690 1918 0.746063 TTTGCTGGGTTTGCTGACTG 59.254 50.000 0.00 0.00 0.00 3.51
1707 1938 5.928264 GCTGACTGCAGGAATTTGTAATTTT 59.072 36.000 19.93 0.00 42.53 1.82
1725 1956 1.038681 TTACCTACCAGGATGCGCGA 61.039 55.000 12.10 0.00 37.67 5.87
1726 1957 1.731433 TACCTACCAGGATGCGCGAC 61.731 60.000 12.10 0.88 37.67 5.19
1737 1974 0.809636 ATGCGCGACGATTCATCCAA 60.810 50.000 12.10 0.00 0.00 3.53
1739 1976 1.692148 GCGCGACGATTCATCCAACA 61.692 55.000 12.10 0.00 0.00 3.33
1748 1985 1.255882 TTCATCCAACACACATGGCC 58.744 50.000 0.00 0.00 37.88 5.36
1821 2067 1.216710 CGAGCAGGAGGACCAGAAC 59.783 63.158 0.00 0.00 38.94 3.01
2022 2325 6.127366 CCATGGATTTGGTGCTACTTATTTGT 60.127 38.462 5.56 0.00 31.74 2.83
2029 2332 8.630054 TTTGGTGCTACTTATTTGTTCAGTAT 57.370 30.769 0.00 0.00 0.00 2.12
2032 2338 9.378551 TGGTGCTACTTATTTGTTCAGTATTAG 57.621 33.333 0.00 0.00 0.00 1.73
2035 2341 9.443323 TGCTACTTATTTGTTCAGTATTAGCAA 57.557 29.630 0.00 0.00 30.34 3.91
2047 2353 6.276091 TCAGTATTAGCAACAGCAGTATCTG 58.724 40.000 0.00 0.00 39.86 2.90
2164 2471 1.227380 CGCGCTCTTTGGCCTCTAT 60.227 57.895 5.56 0.00 0.00 1.98
2331 2638 4.770531 GGGTTACAGCAGGTAATTTTCCTT 59.229 41.667 4.58 0.00 43.50 3.36
2335 2642 8.528643 GGTTACAGCAGGTAATTTTCCTTTTAT 58.471 33.333 4.58 0.00 43.50 1.40
2362 2672 5.643379 TGGACAAACTCTTTATTGGCATC 57.357 39.130 0.00 0.00 36.24 3.91
2363 2673 4.462483 TGGACAAACTCTTTATTGGCATCC 59.538 41.667 0.00 0.00 36.24 3.51
2365 2675 3.769300 ACAAACTCTTTATTGGCATCCCC 59.231 43.478 0.00 0.00 0.00 4.81
2366 2676 2.755952 ACTCTTTATTGGCATCCCCC 57.244 50.000 0.00 0.00 0.00 5.40
2367 2677 2.217776 ACTCTTTATTGGCATCCCCCT 58.782 47.619 0.00 0.00 0.00 4.79
2368 2678 2.091665 ACTCTTTATTGGCATCCCCCTG 60.092 50.000 0.00 0.00 0.00 4.45
2369 2679 1.217689 TCTTTATTGGCATCCCCCTGG 59.782 52.381 0.00 0.00 0.00 4.45
2371 2681 2.638981 TTATTGGCATCCCCCTGGCG 62.639 60.000 0.00 0.00 44.19 5.69
2375 2685 3.161450 GCATCCCCCTGGCGAGTA 61.161 66.667 0.00 0.00 0.00 2.59
2376 2686 2.520536 GCATCCCCCTGGCGAGTAT 61.521 63.158 0.00 0.00 0.00 2.12
2377 2687 1.372683 CATCCCCCTGGCGAGTATG 59.627 63.158 0.00 0.00 0.00 2.39
2378 2688 2.520536 ATCCCCCTGGCGAGTATGC 61.521 63.158 0.00 0.00 0.00 3.14
2379 2689 3.479203 CCCCCTGGCGAGTATGCA 61.479 66.667 0.00 0.00 36.28 3.96
2380 2690 2.109799 CCCCTGGCGAGTATGCAG 59.890 66.667 0.00 0.00 36.28 4.41
2381 2691 2.434843 CCCCTGGCGAGTATGCAGA 61.435 63.158 0.00 0.00 36.28 4.26
2565 2894 9.141400 GTGGATAGAAGACAAAATATATCGTCC 57.859 37.037 6.37 0.00 0.00 4.79
2596 2925 4.585955 ACACTCGACAAACTGTATGACT 57.414 40.909 0.00 0.00 0.00 3.41
2705 3041 2.621055 TGTTTTCTCGGTCCATGTTTGG 59.379 45.455 0.00 0.00 45.15 3.28
2762 3118 8.741101 TTTGTTATCCGTGATTTCAGAAATTG 57.259 30.769 9.84 3.80 0.00 2.32
2849 3206 3.950395 AGAAATATGGAGAGCAAACTGGC 59.050 43.478 0.00 0.00 0.00 4.85
2947 3304 4.499188 CCATAACATGCCTGCATTTCTCAG 60.499 45.833 0.97 0.00 33.90 3.35
2965 3322 4.097589 TCTCAGATGTCAGTGCTATGTCAG 59.902 45.833 0.00 0.00 0.00 3.51
3052 3409 5.660629 TGTTTGTATTGTTCAGTGTACCG 57.339 39.130 0.00 0.00 0.00 4.02
3087 3444 8.213518 ACAACATTATGCCTAGTGATAACAAG 57.786 34.615 0.00 0.00 0.00 3.16
3090 3447 7.564793 ACATTATGCCTAGTGATAACAAGTGA 58.435 34.615 0.00 0.00 0.00 3.41
3159 3516 5.598005 GGGTTTTATGGACCATCATGATGAA 59.402 40.000 32.71 17.16 41.20 2.57
3192 3549 3.924114 TTGAACAAGAAGGGTGTCTCA 57.076 42.857 0.00 0.00 0.00 3.27
3457 3814 4.390297 CAGCTAAACTACCTCTTTGCTGAC 59.610 45.833 11.19 0.00 46.40 3.51
3507 3864 8.343366 CCTAAAACTAACTTTGAACTTCTGGTC 58.657 37.037 0.00 0.00 0.00 4.02
3554 3911 6.751888 GCATTTAAGAAAGATTGTAACGCCAT 59.248 34.615 0.00 0.00 0.00 4.40
3573 3930 5.582269 CGCCATTGTCGATAATATCTGGAAT 59.418 40.000 14.34 0.00 0.00 3.01
3594 3951 9.638239 TGGAATGAGCAGAATAAAATGTTAAAC 57.362 29.630 0.00 0.00 0.00 2.01
3596 3953 8.687824 AATGAGCAGAATAAAATGTTAAACCG 57.312 30.769 0.00 0.00 0.00 4.44
3626 3983 4.183101 CTGATGCACTTCCTCTCTCTTTC 58.817 47.826 0.00 0.00 0.00 2.62
3679 4037 3.895232 ACCTGTTGGTCATACTAGCTG 57.105 47.619 0.00 0.00 44.78 4.24
3783 4141 2.558359 CCTGGTTTCAAACATCAGGGAC 59.442 50.000 14.75 0.00 37.26 4.46
3914 4272 4.497291 TTGGATGCCCTAACGAAGTATT 57.503 40.909 0.00 0.00 45.00 1.89
3921 4279 6.085555 TGCCCTAACGAAGTATTGATAGAG 57.914 41.667 0.00 0.00 45.00 2.43
3924 4282 7.450634 TGCCCTAACGAAGTATTGATAGAGTAT 59.549 37.037 0.00 0.00 45.00 2.12
3950 4308 3.166489 ACCTTAATAGCACGTCTCTGC 57.834 47.619 0.00 0.00 37.44 4.26
3966 4324 2.111878 GCCTCTGTGTGTGCAGGT 59.888 61.111 0.00 0.00 37.12 4.00
3970 4328 2.079158 CCTCTGTGTGTGCAGGTATTG 58.921 52.381 0.00 0.00 37.12 1.90
3994 4352 1.201429 AGGTGCAGGAATTCCTCGGT 61.201 55.000 24.67 0.37 46.65 4.69
4033 4391 0.251354 TGAGCAGGCAGGTGAAGATC 59.749 55.000 0.00 0.00 0.00 2.75
4094 4452 2.689553 TGTGAACAGCAGACTCAACA 57.310 45.000 0.00 0.00 0.00 3.33
4114 4472 1.671880 GGACAGAGTACGCGCGTTTC 61.672 60.000 42.10 34.00 0.00 2.78
4151 4561 1.787847 GTGAAGTGATGCGTTCGGG 59.212 57.895 0.00 0.00 0.00 5.14
4186 4596 4.488879 GTTCAAGATCATTTGCAAGGGAC 58.511 43.478 0.00 0.00 0.00 4.46
4237 4649 1.770294 GACCTGTAGTCTCCAGAGGG 58.230 60.000 0.00 0.00 42.69 4.30
4246 4658 5.363868 TGTAGTCTCCAGAGGGTTGATTATG 59.636 44.000 0.00 0.00 34.93 1.90
4310 4725 8.877864 ATCGATATGGAAATAATAGGGCAAAA 57.122 30.769 0.00 0.00 0.00 2.44
4318 4733 7.069331 TGGAAATAATAGGGCAAAATGTACAGG 59.931 37.037 0.33 0.00 0.00 4.00
4366 4804 4.516698 CCACACAGAGTAGCTCAAAATTGT 59.483 41.667 0.00 0.00 32.06 2.71
4369 4807 5.009010 ACACAGAGTAGCTCAAAATTGTTGG 59.991 40.000 0.00 0.00 32.06 3.77
4396 4834 4.735369 TGGTGATGGTGTATTCTTTGGTT 58.265 39.130 0.00 0.00 0.00 3.67
4416 4854 7.346751 TGGTTTTCTTCAGCTACATTTCTTT 57.653 32.000 0.00 0.00 0.00 2.52
4419 4858 6.575162 TTTCTTCAGCTACATTTCTTTCCC 57.425 37.500 0.00 0.00 0.00 3.97
4477 4916 8.086522 AGCTACGAAGTAACTCACTATTTGAAA 58.913 33.333 0.00 0.00 45.13 2.69
4549 5049 8.100791 TGTGTATATTTCTCAGTACAAAGGCTT 58.899 33.333 0.00 0.00 0.00 4.35
4550 5050 8.947115 GTGTATATTTCTCAGTACAAAGGCTTT 58.053 33.333 6.68 6.68 0.00 3.51
4554 5054 5.818678 TTCTCAGTACAAAGGCTTTAGGA 57.181 39.130 12.95 1.16 0.00 2.94
4573 5073 3.964031 AGGATGTGTTTGGTTTTAAGCCA 59.036 39.130 0.00 0.00 0.00 4.75
4601 5136 8.457238 AAAAAGTTTGCCTTGCCAAATATTTA 57.543 26.923 0.00 0.00 37.09 1.40
4602 5137 8.457238 AAAAGTTTGCCTTGCCAAATATTTAA 57.543 26.923 0.00 0.00 37.09 1.52
4648 5183 2.702261 GGTAATGTTACCCAGCGAACA 58.298 47.619 10.24 0.00 45.94 3.18
4653 5188 0.727398 GTTACCCAGCGAACATCAGC 59.273 55.000 0.00 0.00 0.00 4.26
4695 5289 3.492421 ACGCTATTCAATGGCAGTTTG 57.508 42.857 6.54 0.00 36.44 2.93
4696 5290 2.164219 ACGCTATTCAATGGCAGTTTGG 59.836 45.455 6.54 0.00 36.44 3.28
4697 5291 2.164219 CGCTATTCAATGGCAGTTTGGT 59.836 45.455 6.54 0.00 36.44 3.67
4707 6511 1.473080 GGCAGTTTGGTTGTGCACAAT 60.473 47.619 33.16 15.06 39.05 2.71
4804 6608 3.689347 CCAGTCCATTGTTCATCCTTGA 58.311 45.455 0.00 0.00 0.00 3.02
4884 6688 0.179189 CAGAAAAACGCTGCGGATCC 60.179 55.000 26.95 0.00 0.00 3.36
5013 6820 2.476854 GCGTGCTTGGATCACAATCTTC 60.477 50.000 0.00 0.00 38.65 2.87
5036 6843 0.652592 CCTATTGACGCCTTCGCTTG 59.347 55.000 0.00 0.00 39.84 4.01
5051 6858 1.202234 CGCTTGATTCTCTCGAGAGCA 60.202 52.381 33.20 25.74 41.80 4.26
5105 6912 0.252650 AGCTTTCCTCCCTGCTCTCT 60.253 55.000 0.00 0.00 0.00 3.10
5294 7101 5.904941 ACAAAGTTCATCATTCTGTTTGCA 58.095 33.333 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.433306 AGGTCATGTTGGGATTCGAAA 57.567 42.857 0.00 0.00 0.00 3.46
1 2 3.262151 TGTAGGTCATGTTGGGATTCGAA 59.738 43.478 0.00 0.00 0.00 3.71
2 3 2.835156 TGTAGGTCATGTTGGGATTCGA 59.165 45.455 0.00 0.00 0.00 3.71
3 4 3.260475 TGTAGGTCATGTTGGGATTCG 57.740 47.619 0.00 0.00 0.00 3.34
4 5 7.823745 ATAAATGTAGGTCATGTTGGGATTC 57.176 36.000 0.00 0.00 36.81 2.52
5 6 8.477256 CAAATAAATGTAGGTCATGTTGGGATT 58.523 33.333 0.00 0.00 36.81 3.01
6 7 7.417797 GCAAATAAATGTAGGTCATGTTGGGAT 60.418 37.037 0.00 0.00 36.81 3.85
7 8 6.127479 GCAAATAAATGTAGGTCATGTTGGGA 60.127 38.462 0.00 0.00 36.81 4.37
8 9 6.042143 GCAAATAAATGTAGGTCATGTTGGG 58.958 40.000 0.00 0.00 36.81 4.12
9 10 6.629128 TGCAAATAAATGTAGGTCATGTTGG 58.371 36.000 0.00 0.00 36.81 3.77
10 11 8.531622 TTTGCAAATAAATGTAGGTCATGTTG 57.468 30.769 8.05 0.00 36.81 3.33
11 12 9.553064 TTTTTGCAAATAAATGTAGGTCATGTT 57.447 25.926 13.65 0.00 36.81 2.71
38 39 1.745232 TGCAGGTCGTGTGTCTTTTT 58.255 45.000 0.00 0.00 0.00 1.94
39 40 1.967319 ATGCAGGTCGTGTGTCTTTT 58.033 45.000 0.00 0.00 0.00 2.27
40 41 1.967319 AATGCAGGTCGTGTGTCTTT 58.033 45.000 0.00 0.00 0.00 2.52
41 42 1.967319 AAATGCAGGTCGTGTGTCTT 58.033 45.000 0.00 0.00 0.00 3.01
42 43 2.299013 TCTAAATGCAGGTCGTGTGTCT 59.701 45.455 0.00 0.00 0.00 3.41
43 44 2.683968 TCTAAATGCAGGTCGTGTGTC 58.316 47.619 0.00 0.00 0.00 3.67
44 45 2.831685 TCTAAATGCAGGTCGTGTGT 57.168 45.000 0.00 0.00 0.00 3.72
45 46 3.120199 CCTTTCTAAATGCAGGTCGTGTG 60.120 47.826 0.00 0.00 0.00 3.82
46 47 3.074412 CCTTTCTAAATGCAGGTCGTGT 58.926 45.455 0.00 0.00 0.00 4.49
47 48 3.334691 TCCTTTCTAAATGCAGGTCGTG 58.665 45.455 0.00 0.00 0.00 4.35
48 49 3.695830 TCCTTTCTAAATGCAGGTCGT 57.304 42.857 0.00 0.00 0.00 4.34
49 50 4.695455 TCTTTCCTTTCTAAATGCAGGTCG 59.305 41.667 0.00 0.00 0.00 4.79
50 51 6.575162 TTCTTTCCTTTCTAAATGCAGGTC 57.425 37.500 0.00 0.00 0.00 3.85
51 52 6.515035 CGTTTCTTTCCTTTCTAAATGCAGGT 60.515 38.462 0.00 0.00 0.00 4.00
52 53 5.858581 CGTTTCTTTCCTTTCTAAATGCAGG 59.141 40.000 0.00 0.00 0.00 4.85
53 54 6.668323 TCGTTTCTTTCCTTTCTAAATGCAG 58.332 36.000 0.00 0.00 0.00 4.41
54 55 6.627395 TCGTTTCTTTCCTTTCTAAATGCA 57.373 33.333 0.00 0.00 0.00 3.96
55 56 7.360361 TCTTCGTTTCTTTCCTTTCTAAATGC 58.640 34.615 0.00 0.00 0.00 3.56
56 57 8.774586 TCTCTTCGTTTCTTTCCTTTCTAAATG 58.225 33.333 0.00 0.00 0.00 2.32
57 58 8.775527 GTCTCTTCGTTTCTTTCCTTTCTAAAT 58.224 33.333 0.00 0.00 0.00 1.40
58 59 7.767198 TGTCTCTTCGTTTCTTTCCTTTCTAAA 59.233 33.333 0.00 0.00 0.00 1.85
59 60 7.270047 TGTCTCTTCGTTTCTTTCCTTTCTAA 58.730 34.615 0.00 0.00 0.00 2.10
60 61 6.812998 TGTCTCTTCGTTTCTTTCCTTTCTA 58.187 36.000 0.00 0.00 0.00 2.10
61 62 5.671493 TGTCTCTTCGTTTCTTTCCTTTCT 58.329 37.500 0.00 0.00 0.00 2.52
62 63 5.986004 TGTCTCTTCGTTTCTTTCCTTTC 57.014 39.130 0.00 0.00 0.00 2.62
63 64 6.753107 TTTGTCTCTTCGTTTCTTTCCTTT 57.247 33.333 0.00 0.00 0.00 3.11
64 65 6.542370 TGATTTGTCTCTTCGTTTCTTTCCTT 59.458 34.615 0.00 0.00 0.00 3.36
65 66 6.055588 TGATTTGTCTCTTCGTTTCTTTCCT 58.944 36.000 0.00 0.00 0.00 3.36
66 67 6.300354 TGATTTGTCTCTTCGTTTCTTTCC 57.700 37.500 0.00 0.00 0.00 3.13
67 68 7.630924 TCTTGATTTGTCTCTTCGTTTCTTTC 58.369 34.615 0.00 0.00 0.00 2.62
68 69 7.553881 TCTTGATTTGTCTCTTCGTTTCTTT 57.446 32.000 0.00 0.00 0.00 2.52
69 70 7.227512 ACATCTTGATTTGTCTCTTCGTTTCTT 59.772 33.333 0.00 0.00 0.00 2.52
70 71 6.708054 ACATCTTGATTTGTCTCTTCGTTTCT 59.292 34.615 0.00 0.00 0.00 2.52
71 72 6.794158 CACATCTTGATTTGTCTCTTCGTTTC 59.206 38.462 0.00 0.00 0.00 2.78
72 73 6.483307 TCACATCTTGATTTGTCTCTTCGTTT 59.517 34.615 0.00 0.00 0.00 3.60
73 74 5.991606 TCACATCTTGATTTGTCTCTTCGTT 59.008 36.000 0.00 0.00 0.00 3.85
74 75 5.541845 TCACATCTTGATTTGTCTCTTCGT 58.458 37.500 0.00 0.00 0.00 3.85
75 76 6.471976 TTCACATCTTGATTTGTCTCTTCG 57.528 37.500 0.00 0.00 32.84 3.79
79 80 9.855361 CGTATTATTCACATCTTGATTTGTCTC 57.145 33.333 0.00 0.00 32.84 3.36
80 81 8.830580 CCGTATTATTCACATCTTGATTTGTCT 58.169 33.333 0.00 0.00 32.84 3.41
81 82 7.587757 GCCGTATTATTCACATCTTGATTTGTC 59.412 37.037 0.00 0.00 32.84 3.18
82 83 7.417612 GCCGTATTATTCACATCTTGATTTGT 58.582 34.615 0.00 0.00 32.84 2.83
83 84 6.574832 CGCCGTATTATTCACATCTTGATTTG 59.425 38.462 0.00 0.00 32.84 2.32
84 85 6.293407 CCGCCGTATTATTCACATCTTGATTT 60.293 38.462 0.00 0.00 32.84 2.17
85 86 5.179368 CCGCCGTATTATTCACATCTTGATT 59.821 40.000 0.00 0.00 32.84 2.57
86 87 4.690748 CCGCCGTATTATTCACATCTTGAT 59.309 41.667 0.00 0.00 32.84 2.57
87 88 4.055360 CCGCCGTATTATTCACATCTTGA 58.945 43.478 0.00 0.00 0.00 3.02
88 89 3.807622 ACCGCCGTATTATTCACATCTTG 59.192 43.478 0.00 0.00 0.00 3.02
89 90 4.056050 GACCGCCGTATTATTCACATCTT 58.944 43.478 0.00 0.00 0.00 2.40
90 91 3.554337 GGACCGCCGTATTATTCACATCT 60.554 47.826 0.00 0.00 0.00 2.90
91 92 2.735134 GGACCGCCGTATTATTCACATC 59.265 50.000 0.00 0.00 0.00 3.06
92 93 2.762745 GGACCGCCGTATTATTCACAT 58.237 47.619 0.00 0.00 0.00 3.21
93 94 2.228138 GGACCGCCGTATTATTCACA 57.772 50.000 0.00 0.00 0.00 3.58
105 106 1.287041 GACAAGTAACACGGACCGCC 61.287 60.000 15.39 0.00 0.00 6.13
106 107 1.611592 CGACAAGTAACACGGACCGC 61.612 60.000 15.39 0.00 0.00 5.68
138 139 6.856426 CCCTCTGAATTCTTTTACACGAAAAC 59.144 38.462 7.05 0.00 33.39 2.43
228 232 0.249238 TGTGCGCCCAATTGTCAAAC 60.249 50.000 4.18 0.00 0.00 2.93
242 251 2.100631 GGACCGGAGATTGTGTGCG 61.101 63.158 9.46 0.00 0.00 5.34
244 253 2.185004 AAAGGACCGGAGATTGTGTG 57.815 50.000 9.46 0.00 0.00 3.82
253 262 0.601841 GCGAACTGAAAAGGACCGGA 60.602 55.000 9.46 0.00 0.00 5.14
254 263 0.882927 TGCGAACTGAAAAGGACCGG 60.883 55.000 0.00 0.00 0.00 5.28
255 264 1.156736 ATGCGAACTGAAAAGGACCG 58.843 50.000 0.00 0.00 0.00 4.79
256 265 5.815740 TCTTATATGCGAACTGAAAAGGACC 59.184 40.000 0.00 0.00 0.00 4.46
257 266 6.903883 TCTTATATGCGAACTGAAAAGGAC 57.096 37.500 0.00 0.00 0.00 3.85
258 267 8.397906 CAAATCTTATATGCGAACTGAAAAGGA 58.602 33.333 0.00 0.00 0.00 3.36
259 268 8.397906 TCAAATCTTATATGCGAACTGAAAAGG 58.602 33.333 0.00 0.00 0.00 3.11
260 269 9.214953 GTCAAATCTTATATGCGAACTGAAAAG 57.785 33.333 0.00 0.00 0.00 2.27
261 270 8.946085 AGTCAAATCTTATATGCGAACTGAAAA 58.054 29.630 0.00 0.00 0.00 2.29
263 272 7.763985 TCAGTCAAATCTTATATGCGAACTGAA 59.236 33.333 0.00 0.00 0.00 3.02
265 274 7.468922 TCAGTCAAATCTTATATGCGAACTG 57.531 36.000 0.00 0.00 0.00 3.16
266 275 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
267 276 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
268 277 8.131455 GACTTCAGTCAAATCTTATATGCGAA 57.869 34.615 1.86 0.00 44.18 4.70
269 278 7.700322 GACTTCAGTCAAATCTTATATGCGA 57.300 36.000 1.86 0.00 44.18 5.10
284 293 3.299340 TTACGAGGCTTGACTTCAGTC 57.701 47.619 9.20 0.00 44.97 3.51
286 295 3.654414 ACTTTACGAGGCTTGACTTCAG 58.346 45.455 9.20 0.00 0.00 3.02
287 296 3.746045 ACTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
288 297 6.361114 GTTAAACTTTACGAGGCTTGACTTC 58.639 40.000 9.20 0.00 0.00 3.01
291 300 4.512571 TGGTTAAACTTTACGAGGCTTGAC 59.487 41.667 9.20 0.00 0.00 3.18
292 301 4.706035 TGGTTAAACTTTACGAGGCTTGA 58.294 39.130 9.20 0.00 0.00 3.02
293 302 5.209977 GTTGGTTAAACTTTACGAGGCTTG 58.790 41.667 0.00 0.00 35.75 4.01
325 334 9.829507 TTTCAGATTGTGAATGTTGGTATTTTT 57.170 25.926 0.00 0.00 44.89 1.94
327 336 9.643693 GATTTCAGATTGTGAATGTTGGTATTT 57.356 29.630 0.00 0.00 44.89 1.40
328 337 8.805175 TGATTTCAGATTGTGAATGTTGGTATT 58.195 29.630 0.00 0.00 44.89 1.89
329 338 8.352137 TGATTTCAGATTGTGAATGTTGGTAT 57.648 30.769 0.00 0.00 44.89 2.73
330 339 7.757941 TGATTTCAGATTGTGAATGTTGGTA 57.242 32.000 0.00 0.00 44.89 3.25
331 340 6.653526 TGATTTCAGATTGTGAATGTTGGT 57.346 33.333 0.00 0.00 44.89 3.67
332 341 9.811995 ATATTGATTTCAGATTGTGAATGTTGG 57.188 29.630 0.00 0.00 44.89 3.77
357 366 9.896645 ACTTTAAGTCATGACACATCTATTGAT 57.103 29.630 27.02 0.00 0.00 2.57
358 367 9.725019 AACTTTAAGTCATGACACATCTATTGA 57.275 29.630 27.02 5.47 0.00 2.57
361 370 9.725019 TGAAACTTTAAGTCATGACACATCTAT 57.275 29.630 27.02 7.36 0.00 1.98
362 371 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
363 372 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
382 391 9.665264 GCCAGCTAAAGTTATACAATATGAAAC 57.335 33.333 0.00 0.00 0.00 2.78
383 392 9.402320 TGCCAGCTAAAGTTATACAATATGAAA 57.598 29.630 0.00 0.00 0.00 2.69
384 393 8.972458 TGCCAGCTAAAGTTATACAATATGAA 57.028 30.769 0.00 0.00 0.00 2.57
385 394 8.428852 TCTGCCAGCTAAAGTTATACAATATGA 58.571 33.333 0.00 0.00 0.00 2.15
386 395 8.607441 TCTGCCAGCTAAAGTTATACAATATG 57.393 34.615 0.00 0.00 0.00 1.78
387 396 9.799106 AATCTGCCAGCTAAAGTTATACAATAT 57.201 29.630 0.00 0.00 0.00 1.28
389 398 9.799106 ATAATCTGCCAGCTAAAGTTATACAAT 57.201 29.630 0.00 0.00 0.00 2.71
390 399 9.056005 CATAATCTGCCAGCTAAAGTTATACAA 57.944 33.333 0.00 0.00 0.00 2.41
391 400 8.428852 TCATAATCTGCCAGCTAAAGTTATACA 58.571 33.333 0.00 0.00 0.00 2.29
392 401 8.833231 TCATAATCTGCCAGCTAAAGTTATAC 57.167 34.615 0.00 0.00 0.00 1.47
396 405 8.930846 AATATCATAATCTGCCAGCTAAAGTT 57.069 30.769 0.00 0.00 0.00 2.66
397 406 8.930846 AAATATCATAATCTGCCAGCTAAAGT 57.069 30.769 0.00 0.00 0.00 2.66
425 434 9.491675 TCACAAAGTTTGACCGTATTTATAAGA 57.508 29.630 22.23 0.00 0.00 2.10
428 437 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
429 438 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
430 439 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
431 440 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
446 455 9.396022 AGAATTCTCTAAAGTCAAACTTCACAA 57.604 29.630 0.88 0.00 37.47 3.33
447 456 8.964476 AGAATTCTCTAAAGTCAAACTTCACA 57.036 30.769 0.88 0.00 37.47 3.58
458 467 9.487790 GCTCTGCATATTAGAATTCTCTAAAGT 57.512 33.333 12.24 0.00 45.20 2.66
459 468 9.486497 TGCTCTGCATATTAGAATTCTCTAAAG 57.514 33.333 12.24 2.14 39.39 1.85
460 469 9.836864 TTGCTCTGCATATTAGAATTCTCTAAA 57.163 29.630 12.24 0.95 41.62 1.85
461 470 9.836864 TTTGCTCTGCATATTAGAATTCTCTAA 57.163 29.630 12.24 1.76 42.06 2.10
462 471 9.836864 TTTTGCTCTGCATATTAGAATTCTCTA 57.163 29.630 12.24 5.71 38.76 2.43
463 472 8.743085 TTTTGCTCTGCATATTAGAATTCTCT 57.257 30.769 12.24 3.43 38.76 3.10
464 473 9.448294 CTTTTTGCTCTGCATATTAGAATTCTC 57.552 33.333 12.24 0.00 38.76 2.87
465 474 8.411683 CCTTTTTGCTCTGCATATTAGAATTCT 58.588 33.333 13.56 13.56 38.76 2.40
466 475 8.408601 TCCTTTTTGCTCTGCATATTAGAATTC 58.591 33.333 0.00 0.00 38.76 2.17
467 476 8.193438 GTCCTTTTTGCTCTGCATATTAGAATT 58.807 33.333 0.00 0.00 38.76 2.17
468 477 7.201857 GGTCCTTTTTGCTCTGCATATTAGAAT 60.202 37.037 0.00 0.00 38.76 2.40
469 478 6.095440 GGTCCTTTTTGCTCTGCATATTAGAA 59.905 38.462 0.00 0.00 38.76 2.10
470 479 5.590259 GGTCCTTTTTGCTCTGCATATTAGA 59.410 40.000 0.00 0.00 38.76 2.10
471 480 5.504665 CGGTCCTTTTTGCTCTGCATATTAG 60.505 44.000 0.00 0.00 38.76 1.73
472 481 4.335315 CGGTCCTTTTTGCTCTGCATATTA 59.665 41.667 0.00 0.00 38.76 0.98
473 482 3.129287 CGGTCCTTTTTGCTCTGCATATT 59.871 43.478 0.00 0.00 38.76 1.28
474 483 2.684881 CGGTCCTTTTTGCTCTGCATAT 59.315 45.455 0.00 0.00 38.76 1.78
475 484 2.083774 CGGTCCTTTTTGCTCTGCATA 58.916 47.619 0.00 0.00 38.76 3.14
476 485 0.883833 CGGTCCTTTTTGCTCTGCAT 59.116 50.000 0.00 0.00 38.76 3.96
477 486 1.172180 CCGGTCCTTTTTGCTCTGCA 61.172 55.000 0.00 0.00 36.47 4.41
478 487 0.889186 TCCGGTCCTTTTTGCTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
479 488 1.160137 CTCCGGTCCTTTTTGCTCTG 58.840 55.000 0.00 0.00 0.00 3.35
480 489 0.036875 CCTCCGGTCCTTTTTGCTCT 59.963 55.000 0.00 0.00 0.00 4.09
481 490 0.960861 CCCTCCGGTCCTTTTTGCTC 60.961 60.000 0.00 0.00 0.00 4.26
482 491 1.074951 CCCTCCGGTCCTTTTTGCT 59.925 57.895 0.00 0.00 0.00 3.91
483 492 0.960861 CTCCCTCCGGTCCTTTTTGC 60.961 60.000 0.00 0.00 0.00 3.68
484 493 0.400594 ACTCCCTCCGGTCCTTTTTG 59.599 55.000 0.00 0.00 0.00 2.44
485 494 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
486 495 2.034436 TTACTCCCTCCGGTCCTTTT 57.966 50.000 0.00 0.00 0.00 2.27
487 496 2.034436 TTTACTCCCTCCGGTCCTTT 57.966 50.000 0.00 0.00 0.00 3.11
488 497 2.117051 GATTTACTCCCTCCGGTCCTT 58.883 52.381 0.00 0.00 0.00 3.36
489 498 1.007963 TGATTTACTCCCTCCGGTCCT 59.992 52.381 0.00 0.00 0.00 3.85
490 499 1.138464 GTGATTTACTCCCTCCGGTCC 59.862 57.143 0.00 0.00 0.00 4.46
491 500 1.829222 TGTGATTTACTCCCTCCGGTC 59.171 52.381 0.00 0.00 0.00 4.79
492 501 1.946984 TGTGATTTACTCCCTCCGGT 58.053 50.000 0.00 0.00 0.00 5.28
493 502 2.629051 GTTGTGATTTACTCCCTCCGG 58.371 52.381 0.00 0.00 0.00 5.14
494 503 2.236395 AGGTTGTGATTTACTCCCTCCG 59.764 50.000 0.00 0.00 0.00 4.63
495 504 3.009143 ACAGGTTGTGATTTACTCCCTCC 59.991 47.826 0.00 0.00 30.73 4.30
496 505 4.287766 ACAGGTTGTGATTTACTCCCTC 57.712 45.455 0.00 0.00 30.73 4.30
516 525 0.318955 GCACCAGTTGTTCCATGCAC 60.319 55.000 0.00 0.00 33.27 4.57
518 527 1.081242 CGCACCAGTTGTTCCATGC 60.081 57.895 0.00 0.00 0.00 4.06
538 547 0.098376 GTACTACGCGACCAGTCCAG 59.902 60.000 15.93 0.00 0.00 3.86
569 582 2.296692 CTTCTCCAAATGTCGCCGCG 62.297 60.000 6.39 6.39 0.00 6.46
598 611 1.068474 CGTTTCACCGACACATCCTC 58.932 55.000 0.00 0.00 0.00 3.71
599 612 0.949105 GCGTTTCACCGACACATCCT 60.949 55.000 0.00 0.00 0.00 3.24
600 613 1.495951 GCGTTTCACCGACACATCC 59.504 57.895 0.00 0.00 0.00 3.51
674 687 2.292267 AGCGGTTTCATCAGGCTATTG 58.708 47.619 0.00 0.00 31.03 1.90
676 689 2.717639 AAGCGGTTTCATCAGGCTAT 57.282 45.000 0.00 0.00 32.82 2.97
712 736 4.200283 CGGCAGCCTCGAGAGACC 62.200 72.222 15.71 8.75 35.39 3.85
713 737 4.200283 CCGGCAGCCTCGAGAGAC 62.200 72.222 15.71 4.53 35.39 3.36
794 820 3.930848 GACCATCGTCGATTAAACCAAGT 59.069 43.478 4.63 0.00 0.00 3.16
806 832 0.736325 GTCTTGGTGGACCATCGTCG 60.736 60.000 0.00 0.00 46.97 5.12
807 833 3.139029 GTCTTGGTGGACCATCGTC 57.861 57.895 0.00 0.00 46.97 4.20
855 899 1.152963 ACAAAGTGCAGGCGGAGTT 60.153 52.632 0.00 0.00 0.00 3.01
876 920 1.676967 CCTGCCTTGAGCCCTTGAC 60.677 63.158 0.00 0.00 42.71 3.18
904 948 2.691409 TAGGAAATTGGGAGTGAGCG 57.309 50.000 0.00 0.00 0.00 5.03
908 952 4.889995 GGAGGAATTAGGAAATTGGGAGTG 59.110 45.833 0.00 0.00 35.41 3.51
911 955 3.687264 GCGGAGGAATTAGGAAATTGGGA 60.687 47.826 0.00 0.00 35.41 4.37
912 956 2.623416 GCGGAGGAATTAGGAAATTGGG 59.377 50.000 0.00 0.00 35.41 4.12
913 957 3.287222 TGCGGAGGAATTAGGAAATTGG 58.713 45.455 0.00 0.00 35.41 3.16
914 958 5.520376 AATGCGGAGGAATTAGGAAATTG 57.480 39.130 0.00 0.00 35.41 2.32
915 959 6.833933 AGTTAATGCGGAGGAATTAGGAAATT 59.166 34.615 0.00 0.00 38.03 1.82
916 960 6.365520 AGTTAATGCGGAGGAATTAGGAAAT 58.634 36.000 0.00 0.00 0.00 2.17
917 961 5.751586 AGTTAATGCGGAGGAATTAGGAAA 58.248 37.500 0.00 0.00 0.00 3.13
918 962 5.367945 AGTTAATGCGGAGGAATTAGGAA 57.632 39.130 0.00 0.00 0.00 3.36
919 963 6.488769 TTAGTTAATGCGGAGGAATTAGGA 57.511 37.500 0.00 0.00 0.00 2.94
920 964 7.444183 TCAATTAGTTAATGCGGAGGAATTAGG 59.556 37.037 0.00 0.00 0.00 2.69
921 965 8.378172 TCAATTAGTTAATGCGGAGGAATTAG 57.622 34.615 0.00 0.00 0.00 1.73
922 966 7.041372 GCTCAATTAGTTAATGCGGAGGAATTA 60.041 37.037 0.00 0.00 0.00 1.40
945 989 4.572795 CGGGGAAGAAGAAGAAATTAGCTC 59.427 45.833 0.00 0.00 0.00 4.09
946 990 4.019231 ACGGGGAAGAAGAAGAAATTAGCT 60.019 41.667 0.00 0.00 0.00 3.32
947 991 4.262617 ACGGGGAAGAAGAAGAAATTAGC 58.737 43.478 0.00 0.00 0.00 3.09
948 992 4.567159 CGACGGGGAAGAAGAAGAAATTAG 59.433 45.833 0.00 0.00 0.00 1.73
950 994 3.335579 CGACGGGGAAGAAGAAGAAATT 58.664 45.455 0.00 0.00 0.00 1.82
951 995 2.354805 CCGACGGGGAAGAAGAAGAAAT 60.355 50.000 5.81 0.00 38.47 2.17
952 996 1.001633 CCGACGGGGAAGAAGAAGAAA 59.998 52.381 5.81 0.00 38.47 2.52
978 1050 3.930229 TGATTATTCGACGAAAGGGTGTG 59.070 43.478 15.22 0.00 0.00 3.82
979 1051 4.196626 TGATTATTCGACGAAAGGGTGT 57.803 40.909 15.22 0.00 0.00 4.16
981 1053 5.243207 AGTTTGATTATTCGACGAAAGGGT 58.757 37.500 15.22 0.11 0.00 4.34
982 1054 5.581085 AGAGTTTGATTATTCGACGAAAGGG 59.419 40.000 15.22 0.00 0.00 3.95
983 1055 6.648725 AGAGTTTGATTATTCGACGAAAGG 57.351 37.500 15.22 0.00 0.00 3.11
984 1056 9.461760 GTTTAGAGTTTGATTATTCGACGAAAG 57.538 33.333 15.22 0.00 0.00 2.62
986 1058 7.063780 GGGTTTAGAGTTTGATTATTCGACGAA 59.936 37.037 13.48 13.48 0.00 3.85
987 1059 6.532657 GGGTTTAGAGTTTGATTATTCGACGA 59.467 38.462 0.00 0.00 0.00 4.20
989 1061 6.312180 ACGGGTTTAGAGTTTGATTATTCGAC 59.688 38.462 0.00 0.00 0.00 4.20
992 1069 7.336176 AGGAACGGGTTTAGAGTTTGATTATTC 59.664 37.037 0.00 0.00 0.00 1.75
1019 1098 2.240921 AGAAAGGAGAAGGGAATGGAGC 59.759 50.000 0.00 0.00 0.00 4.70
1071 1163 3.238597 AGAGTGAGGGAGATAATGGAGC 58.761 50.000 0.00 0.00 0.00 4.70
1097 1189 8.386264 CCCTCTCTCTCTCTCTCTCTAATTTAT 58.614 40.741 0.00 0.00 0.00 1.40
1098 1190 7.570982 TCCCTCTCTCTCTCTCTCTCTAATTTA 59.429 40.741 0.00 0.00 0.00 1.40
1099 1191 6.389869 TCCCTCTCTCTCTCTCTCTCTAATTT 59.610 42.308 0.00 0.00 0.00 1.82
1100 1192 5.911178 TCCCTCTCTCTCTCTCTCTCTAATT 59.089 44.000 0.00 0.00 0.00 1.40
1101 1193 5.476983 TCCCTCTCTCTCTCTCTCTCTAAT 58.523 45.833 0.00 0.00 0.00 1.73
1102 1194 4.890988 TCCCTCTCTCTCTCTCTCTCTAA 58.109 47.826 0.00 0.00 0.00 2.10
1103 1195 4.483950 CTCCCTCTCTCTCTCTCTCTCTA 58.516 52.174 0.00 0.00 0.00 2.43
1104 1196 3.312890 CTCCCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
1105 1197 2.370189 CCTCCCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
1106 1198 2.412591 CCTCCCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
1107 1199 1.421646 CCCTCCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1108 1200 1.010793 TCCCTCCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1109 1201 1.421646 CTCCCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1110 1202 1.522900 CTCCCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
1111 1203 0.478507 CCTCCCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
1112 1204 0.998945 CCCTCCCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1113 1205 0.996762 TCCCTCCCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1114 1206 0.556380 TTCCCTCCCTCCCTCTCTCT 60.556 60.000 0.00 0.00 0.00 3.10
1115 1207 0.105709 CTTCCCTCCCTCCCTCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
1116 1208 2.023532 CTTCCCTCCCTCCCTCTCT 58.976 63.158 0.00 0.00 0.00 3.10
1117 1209 1.764454 GCTTCCCTCCCTCCCTCTC 60.764 68.421 0.00 0.00 0.00 3.20
1118 1210 2.260524 AGCTTCCCTCCCTCCCTCT 61.261 63.158 0.00 0.00 0.00 3.69
1119 1211 2.069430 CAGCTTCCCTCCCTCCCTC 61.069 68.421 0.00 0.00 0.00 4.30
1120 1212 2.041928 CAGCTTCCCTCCCTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
1121 1213 3.093172 CCAGCTTCCCTCCCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
1122 1214 3.093172 CCCAGCTTCCCTCCCTCC 61.093 72.222 0.00 0.00 0.00 4.30
1123 1215 2.041265 TCCCAGCTTCCCTCCCTC 59.959 66.667 0.00 0.00 0.00 4.30
1124 1216 2.041928 CTCCCAGCTTCCCTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
1125 1217 3.803162 GCTCCCAGCTTCCCTCCC 61.803 72.222 0.00 0.00 38.45 4.30
1126 1218 4.168291 CGCTCCCAGCTTCCCTCC 62.168 72.222 0.00 0.00 39.60 4.30
1127 1219 1.977293 AATCGCTCCCAGCTTCCCTC 61.977 60.000 0.00 0.00 39.60 4.30
1128 1220 1.977293 GAATCGCTCCCAGCTTCCCT 61.977 60.000 0.00 0.00 39.60 4.20
1129 1221 1.524849 GAATCGCTCCCAGCTTCCC 60.525 63.158 0.00 0.00 39.60 3.97
1130 1222 1.524849 GGAATCGCTCCCAGCTTCC 60.525 63.158 1.89 1.89 38.05 3.46
1131 1223 0.813210 CAGGAATCGCTCCCAGCTTC 60.813 60.000 0.15 0.00 46.81 3.86
1132 1224 1.222936 CAGGAATCGCTCCCAGCTT 59.777 57.895 0.15 0.00 46.81 3.74
1133 1225 2.906458 CAGGAATCGCTCCCAGCT 59.094 61.111 0.15 0.00 46.81 4.24
1134 1226 2.899339 GCAGGAATCGCTCCCAGC 60.899 66.667 0.15 2.16 46.81 4.85
1135 1227 1.523258 CAGCAGGAATCGCTCCCAG 60.523 63.158 0.15 0.00 46.81 4.45
1136 1228 1.989508 TCAGCAGGAATCGCTCCCA 60.990 57.895 0.15 0.00 46.81 4.37
1137 1229 1.522580 GTCAGCAGGAATCGCTCCC 60.523 63.158 0.15 0.00 46.81 4.30
1138 1230 1.880340 CGTCAGCAGGAATCGCTCC 60.880 63.158 0.00 0.00 45.81 4.70
1139 1231 2.520904 GCGTCAGCAGGAATCGCTC 61.521 63.158 0.00 0.00 44.35 5.03
1140 1232 2.510238 GCGTCAGCAGGAATCGCT 60.510 61.111 0.00 0.00 44.35 4.93
1141 1233 3.918220 CGCGTCAGCAGGAATCGC 61.918 66.667 0.00 0.00 45.49 4.58
1142 1234 3.918220 GCGCGTCAGCAGGAATCG 61.918 66.667 8.43 0.00 45.49 3.34
1143 1235 3.567797 GGCGCGTCAGCAGGAATC 61.568 66.667 5.47 0.00 45.49 2.52
1144 1236 4.393155 TGGCGCGTCAGCAGGAAT 62.393 61.111 10.57 0.00 45.49 3.01
1158 1250 2.046507 CCTCACACCTCAGCTGGC 60.047 66.667 15.13 0.00 0.00 4.85
1187 1284 0.666577 GGAACGGAAGAGTCACACGG 60.667 60.000 0.00 0.00 0.00 4.94
1188 1285 2.810486 GGAACGGAAGAGTCACACG 58.190 57.895 0.00 0.00 0.00 4.49
1224 1321 1.014564 GGGAGAGACCACGCGAAAAG 61.015 60.000 15.93 0.00 41.20 2.27
1242 1339 0.954449 CACAAGACAGGCAGCTCTGG 60.954 60.000 13.53 0.29 38.98 3.86
1244 1341 1.302351 GCACAAGACAGGCAGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
1245 1342 2.675056 CGCACAAGACAGGCAGCTC 61.675 63.158 0.00 0.00 0.00 4.09
1264 1361 2.202610 GATTTTGCTTCCCCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
1265 1362 1.305219 TGAGATTTTGCTTCCCCGCG 61.305 55.000 0.00 0.00 0.00 6.46
1291 1388 2.776913 GGCGGAGGAGGAAGACGAG 61.777 68.421 0.00 0.00 0.00 4.18
1311 1408 3.388703 GAGCAGGAGCAGGAGCAGG 62.389 68.421 0.00 0.00 45.49 4.85
1312 1409 2.187424 GAGCAGGAGCAGGAGCAG 59.813 66.667 0.00 0.00 45.49 4.24
1313 1410 3.397439 GGAGCAGGAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
1314 1411 2.964310 TTGGAGCAGGAGCAGGAGC 61.964 63.158 0.00 0.00 45.49 4.70
1315 1412 1.078567 GTTGGAGCAGGAGCAGGAG 60.079 63.158 0.00 0.00 45.49 3.69
1316 1413 2.596851 GGTTGGAGCAGGAGCAGGA 61.597 63.158 0.00 0.00 45.49 3.86
1317 1414 2.045536 GGTTGGAGCAGGAGCAGG 60.046 66.667 0.00 0.00 45.49 4.85
1318 1415 1.376942 CTGGTTGGAGCAGGAGCAG 60.377 63.158 0.00 0.00 45.49 4.24
1319 1416 2.752358 CTGGTTGGAGCAGGAGCA 59.248 61.111 0.00 0.00 45.49 4.26
1320 1417 2.749441 GCTGGTTGGAGCAGGAGC 60.749 66.667 8.95 0.00 43.49 4.70
1321 1418 2.045536 GGCTGGTTGGAGCAGGAG 60.046 66.667 8.95 0.00 43.49 3.69
1322 1419 4.020617 CGGCTGGTTGGAGCAGGA 62.021 66.667 8.95 0.00 43.49 3.86
1408 1510 2.964389 GAATCTGCCGCCGAGAGC 60.964 66.667 0.00 0.00 38.52 4.09
1410 1512 4.873129 GCGAATCTGCCGCCGAGA 62.873 66.667 0.00 0.00 46.22 4.04
1419 1525 2.971744 GAAATGCCGGCGCGAATCTG 62.972 60.000 23.90 0.00 38.08 2.90
1451 1560 0.036306 GGAAAGGAGAGTTGGGCGAA 59.964 55.000 0.00 0.00 0.00 4.70
1457 1566 1.826385 AATGGCGGAAAGGAGAGTTG 58.174 50.000 0.00 0.00 0.00 3.16
1458 1567 2.040412 AGAAATGGCGGAAAGGAGAGTT 59.960 45.455 0.00 0.00 0.00 3.01
1459 1568 1.630878 AGAAATGGCGGAAAGGAGAGT 59.369 47.619 0.00 0.00 0.00 3.24
1503 1720 1.691163 GGGAGGGAGAAGGGAGAGAAG 60.691 61.905 0.00 0.00 0.00 2.85
1514 1734 4.095400 GGCTGAGGGGGAGGGAGA 62.095 72.222 0.00 0.00 0.00 3.71
1516 1736 2.623763 TAGGCTGAGGGGGAGGGA 60.624 66.667 0.00 0.00 0.00 4.20
1524 1744 2.522271 GGAGAACCCTAGGCTGAGG 58.478 63.158 2.05 0.00 36.23 3.86
1576 1796 7.543947 AATTTCAAGAAAAGAAAAGCACCAG 57.456 32.000 0.00 0.00 38.36 4.00
1606 1827 4.611367 AGTACATACCAGCACCTAAGACT 58.389 43.478 0.00 0.00 0.00 3.24
1607 1828 6.651975 ATAGTACATACCAGCACCTAAGAC 57.348 41.667 0.00 0.00 0.00 3.01
1609 1830 7.040892 TCGTAATAGTACATACCAGCACCTAAG 60.041 40.741 0.78 0.00 0.00 2.18
1610 1831 6.772233 TCGTAATAGTACATACCAGCACCTAA 59.228 38.462 0.78 0.00 0.00 2.69
1611 1832 6.298361 TCGTAATAGTACATACCAGCACCTA 58.702 40.000 0.78 0.00 0.00 3.08
1612 1833 5.135383 TCGTAATAGTACATACCAGCACCT 58.865 41.667 0.78 0.00 0.00 4.00
1644 1865 4.438148 TCCCGCAAAAGAAAAGAAAAAGG 58.562 39.130 0.00 0.00 0.00 3.11
1656 1877 1.202405 AGCAAAACACTCCCGCAAAAG 60.202 47.619 0.00 0.00 0.00 2.27
1690 1918 7.832769 TGGTAGGTAAAATTACAAATTCCTGC 58.167 34.615 5.74 0.00 35.37 4.85
1693 1924 8.584063 TCCTGGTAGGTAAAATTACAAATTCC 57.416 34.615 5.74 2.03 36.53 3.01
1698 1929 5.587043 CGCATCCTGGTAGGTAAAATTACAA 59.413 40.000 5.74 0.00 36.53 2.41
1707 1938 1.454295 TCGCGCATCCTGGTAGGTA 60.454 57.895 8.75 0.00 36.53 3.08
1725 1956 2.749076 CCATGTGTGTTGGATGAATCGT 59.251 45.455 0.00 0.00 36.26 3.73
1726 1957 2.478370 GCCATGTGTGTTGGATGAATCG 60.478 50.000 0.00 0.00 36.26 3.34
1737 1974 2.987547 GCAGCTGGCCATGTGTGT 60.988 61.111 17.12 0.00 36.11 3.72
1739 1976 2.675423 CAGCAGCTGGCCATGTGT 60.675 61.111 17.12 0.00 46.50 3.72
1774 2020 0.108138 GCAGAGTAACATGCCGAGGT 60.108 55.000 0.00 0.00 36.41 3.85
1775 2021 0.176680 AGCAGAGTAACATGCCGAGG 59.823 55.000 0.00 0.00 43.60 4.63
1885 2132 0.731417 CCAAATCCAGAAGCAGAGCG 59.269 55.000 0.00 0.00 0.00 5.03
1983 2286 6.484643 CCAAATCCATGGTGAGATACTGTTAG 59.515 42.308 12.58 0.00 35.65 2.34
2014 2317 8.236586 TGCTGTTGCTAATACTGAACAAATAAG 58.763 33.333 0.00 0.00 40.48 1.73
2022 2325 6.758416 CAGATACTGCTGTTGCTAATACTGAA 59.242 38.462 0.09 0.00 40.48 3.02
2029 2332 3.260632 TGGTCAGATACTGCTGTTGCTAA 59.739 43.478 0.09 0.00 40.48 3.09
2032 2338 2.099141 TGGTCAGATACTGCTGTTGC 57.901 50.000 0.09 0.00 37.20 4.17
2035 2341 2.470990 TCCATGGTCAGATACTGCTGT 58.529 47.619 12.58 0.66 37.20 4.40
2038 2344 2.775890 CCATCCATGGTCAGATACTGC 58.224 52.381 12.58 0.00 43.05 4.40
2164 2471 2.009681 TGAAGGAGAGGTAGCACACA 57.990 50.000 0.00 0.00 0.00 3.72
2335 2642 5.885912 GCCAATAAAGAGTTTGTCCATCCTA 59.114 40.000 0.00 0.00 0.00 2.94
2344 2654 3.132824 GGGGGATGCCAATAAAGAGTTTG 59.867 47.826 5.30 0.00 0.00 2.93
2362 2672 3.466791 CTGCATACTCGCCAGGGGG 62.467 68.421 3.14 0.00 37.18 5.40
2363 2673 1.762522 ATCTGCATACTCGCCAGGGG 61.763 60.000 0.00 0.00 0.00 4.79
2365 2675 1.959042 AAATCTGCATACTCGCCAGG 58.041 50.000 0.00 0.00 0.00 4.45
2366 2676 3.002042 CAGAAAATCTGCATACTCGCCAG 59.998 47.826 0.00 0.00 37.72 4.85
2367 2677 2.938451 CAGAAAATCTGCATACTCGCCA 59.062 45.455 0.00 0.00 37.72 5.69
2368 2678 3.001736 GTCAGAAAATCTGCATACTCGCC 59.998 47.826 2.48 0.00 43.95 5.54
2369 2679 3.618594 TGTCAGAAAATCTGCATACTCGC 59.381 43.478 2.48 0.00 43.95 5.03
2371 2681 6.093219 ACATGTGTCAGAAAATCTGCATACTC 59.907 38.462 0.00 0.00 43.95 2.59
2372 2682 5.942236 ACATGTGTCAGAAAATCTGCATACT 59.058 36.000 0.00 0.00 43.95 2.12
2373 2683 6.187125 ACATGTGTCAGAAAATCTGCATAC 57.813 37.500 0.00 2.95 43.95 2.39
2375 2685 5.717078 AACATGTGTCAGAAAATCTGCAT 57.283 34.783 0.00 0.00 43.95 3.96
2376 2686 5.300034 AGAAACATGTGTCAGAAAATCTGCA 59.700 36.000 18.32 2.19 43.95 4.41
2377 2687 5.766222 AGAAACATGTGTCAGAAAATCTGC 58.234 37.500 18.32 0.00 43.95 4.26
2378 2688 7.380602 GGAAAGAAACATGTGTCAGAAAATCTG 59.619 37.037 18.32 0.88 45.59 2.90
2379 2689 7.068593 TGGAAAGAAACATGTGTCAGAAAATCT 59.931 33.333 18.32 0.26 0.00 2.40
2380 2690 7.202526 TGGAAAGAAACATGTGTCAGAAAATC 58.797 34.615 18.32 6.51 0.00 2.17
2381 2691 7.111247 TGGAAAGAAACATGTGTCAGAAAAT 57.889 32.000 18.32 0.00 0.00 1.82
2402 2731 1.754745 GAGCATTCCGCCCTATGGA 59.245 57.895 0.00 0.00 44.04 3.41
2565 2894 4.208460 AGTTTGTCGAGTGTTTGTACGATG 59.792 41.667 0.00 0.00 37.14 3.84
2596 2925 0.819259 GCACTTGTGAGCCAGTCCAA 60.819 55.000 4.79 0.00 0.00 3.53
2685 3014 2.882137 TCCAAACATGGACCGAGAAAAC 59.118 45.455 0.00 0.00 32.09 2.43
2692 3021 1.165270 GAACCTCCAAACATGGACCG 58.835 55.000 0.00 0.00 33.77 4.79
2705 3041 2.427506 ACCGAAGAAATGCTGAACCTC 58.572 47.619 0.00 0.00 0.00 3.85
2762 3118 2.222027 AGGCACAGCTTCAAAGTGTAC 58.778 47.619 3.40 0.00 35.75 2.90
2849 3206 3.181483 GGCAAGCAAACCAGATCATAAGG 60.181 47.826 0.00 0.00 0.00 2.69
2947 3304 3.118992 TGACCTGACATAGCACTGACATC 60.119 47.826 0.00 0.00 0.00 3.06
2965 3322 6.490566 AAGTTTGGTATCATTAACGTGACC 57.509 37.500 0.00 0.00 0.00 4.02
3052 3409 8.621286 ACTAGGCATAATGTTGTTAATGCTAAC 58.379 33.333 6.16 0.00 38.34 2.34
3121 3478 3.620427 AAAACCCTGGAAAACACAACC 57.380 42.857 0.00 0.00 0.00 3.77
3222 3579 0.460987 ACACAGAGATAAGCCTGCGC 60.461 55.000 0.00 0.00 33.90 6.09
3288 3645 4.216902 TCTTCCGAGTGAACGTGAGATTTA 59.783 41.667 0.00 0.00 0.00 1.40
3398 3755 3.222603 CAGGGTAAGAAAACAAGTGCCT 58.777 45.455 0.00 0.00 0.00 4.75
3431 3788 6.070767 TCAGCAAAGAGGTAGTTTAGCTGTAT 60.071 38.462 10.39 0.00 46.01 2.29
3457 3814 2.353357 TAGCATTTCAGAGCCCCATG 57.647 50.000 0.00 0.00 0.00 3.66
3502 3859 6.566197 AGCAGAAGATTAAAGTTTGACCAG 57.434 37.500 0.00 0.00 0.00 4.00
3507 3864 7.467557 TGCAAAAGCAGAAGATTAAAGTTTG 57.532 32.000 0.00 0.00 0.00 2.93
3541 3898 3.944422 ATCGACAATGGCGTTACAATC 57.056 42.857 8.85 0.00 0.00 2.67
3554 3911 6.758254 TGCTCATTCCAGATATTATCGACAA 58.242 36.000 0.00 0.00 0.00 3.18
3573 3930 6.207810 ACCGGTTTAACATTTTATTCTGCTCA 59.792 34.615 0.00 0.00 0.00 4.26
3626 3983 5.862924 AAGTCAGTTATGATGGTTGTTCG 57.137 39.130 0.00 0.00 37.87 3.95
3679 4037 8.443953 AAATAGACTTATCAGATGAAAGCACC 57.556 34.615 0.00 0.00 0.00 5.01
3695 4053 5.006386 CCTGGCAGAGAACAAAATAGACTT 58.994 41.667 17.94 0.00 0.00 3.01
3783 4141 2.014857 TCTCCCATGTACTTCTCGACG 58.985 52.381 0.00 0.00 0.00 5.12
3921 4279 6.982724 AGACGTGCTATTAAGGTAAACCATAC 59.017 38.462 0.00 0.00 38.89 2.39
3924 4282 5.186409 AGAGACGTGCTATTAAGGTAAACCA 59.814 40.000 0.00 0.00 38.89 3.67
3950 4308 2.079158 CAATACCTGCACACACAGAGG 58.921 52.381 0.00 0.00 40.25 3.69
3966 4324 3.737559 ATTCCTGCACCTGGAACAATA 57.262 42.857 7.99 0.00 42.56 1.90
3970 4328 1.177401 GGAATTCCTGCACCTGGAAC 58.823 55.000 17.73 0.00 42.56 3.62
4094 4452 2.138656 AAACGCGCGTACTCTGTCCT 62.139 55.000 37.93 14.77 0.00 3.85
4114 4472 1.278172 CGTAATCTGCGCCATCGAGG 61.278 60.000 4.18 0.00 41.84 4.63
4151 4561 8.674263 AATGATCTTGAACCTACATCAGAATC 57.326 34.615 0.00 0.00 0.00 2.52
4186 4596 4.433186 CACTACTCTGTGGTCTGAAGAG 57.567 50.000 3.20 3.20 42.59 2.85
4237 4649 9.162764 ACTACCTCATTGTACAACATAATCAAC 57.837 33.333 11.22 0.00 0.00 3.18
4246 4658 7.041644 TGCACTTTAACTACCTCATTGTACAAC 60.042 37.037 11.22 0.00 0.00 3.32
4310 4725 4.010667 TGAACGCCTAAAACCTGTACAT 57.989 40.909 0.00 0.00 0.00 2.29
4318 4733 6.795593 GTCTGAAAGTAATGAACGCCTAAAAC 59.204 38.462 0.00 0.00 33.76 2.43
4396 4834 6.306987 AGGGAAAGAAATGTAGCTGAAGAAA 58.693 36.000 0.00 0.00 0.00 2.52
4437 4876 2.560981 TCGTAGCTCACAGATTTGTCCA 59.439 45.455 0.00 0.00 34.62 4.02
4549 5049 5.598830 TGGCTTAAAACCAAACACATCCTAA 59.401 36.000 0.00 0.00 33.12 2.69
4550 5050 5.141182 TGGCTTAAAACCAAACACATCCTA 58.859 37.500 0.00 0.00 33.12 2.94
4578 5106 7.719193 AGTTAAATATTTGGCAAGGCAAACTTT 59.281 29.630 21.65 22.33 37.29 2.66
4634 5169 0.727398 GCTGATGTTCGCTGGGTAAC 59.273 55.000 0.00 0.00 0.00 2.50
4653 5188 1.517832 CTTACCACCGCTCTCCCAG 59.482 63.158 0.00 0.00 0.00 4.45
4668 5262 2.286833 GCCATTGAATAGCGTTCGCTTA 59.713 45.455 23.92 11.03 42.08 3.09
4677 5271 3.874392 ACCAAACTGCCATTGAATAGC 57.126 42.857 0.00 0.00 0.00 2.97
4679 5273 4.798924 GCACAACCAAACTGCCATTGAATA 60.799 41.667 0.00 0.00 0.00 1.75
4683 5277 1.219646 GCACAACCAAACTGCCATTG 58.780 50.000 0.00 0.00 0.00 2.82
4684 5278 0.829333 TGCACAACCAAACTGCCATT 59.171 45.000 0.00 0.00 0.00 3.16
4695 5289 4.236935 CCAATAACTCATTGTGCACAACC 58.763 43.478 33.29 0.00 42.22 3.77
4696 5290 3.674753 GCCAATAACTCATTGTGCACAAC 59.325 43.478 33.29 12.97 42.22 3.32
4697 5291 3.305950 GGCCAATAACTCATTGTGCACAA 60.306 43.478 32.78 32.78 42.22 3.33
4723 6527 7.534282 ACCAAATTTTGTTTCATGACCAAAAC 58.466 30.769 24.19 14.82 39.90 2.43
4736 6540 7.771361 CCAAAGTTTACCCTACCAAATTTTGTT 59.229 33.333 8.26 0.00 38.57 2.83
4737 6541 7.276658 CCAAAGTTTACCCTACCAAATTTTGT 58.723 34.615 8.26 0.13 38.57 2.83
4804 6608 9.311916 TCATTTTCAGTGAAATTTTGTCGATTT 57.688 25.926 18.69 0.00 31.34 2.17
5013 6820 0.870307 CGAAGGCGTCAATAGGGTCG 60.870 60.000 0.55 0.00 0.00 4.79
5036 6843 1.066908 CTGGGTGCTCTCGAGAGAATC 59.933 57.143 39.91 32.25 44.74 2.52
5051 6858 1.893808 CAACGAGCAACAGCTGGGT 60.894 57.895 19.93 6.52 39.10 4.51
5060 6867 1.867233 GCTCAAGAGAACAACGAGCAA 59.133 47.619 0.32 0.00 46.55 3.91
5294 7101 0.603569 CAAGCACCAGTACGACTCCT 59.396 55.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.