Multiple sequence alignment - TraesCS2A01G141600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G141600 chr2A 100.000 5135 0 0 1 5135 86979804 86984938 0.000000e+00 9483.0
1 TraesCS2A01G141600 chr2A 88.158 76 9 0 576 651 209383901 209383976 1.970000e-14 91.6
2 TraesCS2A01G141600 chr2D 90.262 3892 198 88 649 4453 86526376 86530173 0.000000e+00 4920.0
3 TraesCS2A01G141600 chr2D 90.597 553 27 10 4548 5093 86530194 86530728 0.000000e+00 710.0
4 TraesCS2A01G141600 chr2D 87.143 70 9 0 580 649 558083236 558083305 4.260000e-11 80.5
5 TraesCS2A01G141600 chr2D 87.755 49 2 3 875 923 406947386 406947342 3.000000e-03 54.7
6 TraesCS2A01G141600 chr2B 90.781 1562 87 35 2822 4370 139400013 139401530 0.000000e+00 2034.0
7 TraesCS2A01G141600 chr2B 88.994 1690 78 50 649 2268 139397720 139399371 0.000000e+00 1991.0
8 TraesCS2A01G141600 chr2B 88.554 498 36 9 2329 2813 139399481 139399970 7.410000e-163 584.0
9 TraesCS2A01G141600 chr2B 91.525 236 16 3 4856 5090 139401570 139401802 6.410000e-84 322.0
10 TraesCS2A01G141600 chr2B 89.352 216 16 5 1569 1778 699750195 699749981 1.100000e-66 265.0
11 TraesCS2A01G141600 chr2B 91.209 91 7 1 1 91 139397633 139397722 6.980000e-24 122.0
12 TraesCS2A01G141600 chr2B 86.420 81 9 1 4456 4536 467064641 467064719 2.550000e-13 87.9
13 TraesCS2A01G141600 chr2B 87.013 77 8 1 4460 4536 736212811 736212737 9.160000e-13 86.1
14 TraesCS2A01G141600 chr7A 93.418 471 27 2 91 560 549547868 549548335 0.000000e+00 695.0
15 TraesCS2A01G141600 chr7A 83.281 317 28 14 249 562 167846917 167847211 8.470000e-68 268.0
16 TraesCS2A01G141600 chr7A 94.118 51 3 0 5085 5135 98086518 98086568 1.530000e-10 78.7
17 TraesCS2A01G141600 chr5A 91.368 475 39 2 87 560 296464048 296463575 0.000000e+00 649.0
18 TraesCS2A01G141600 chr5A 95.833 48 2 0 5088 5135 556560658 556560705 1.530000e-10 78.7
19 TraesCS2A01G141600 chr7D 93.852 244 15 0 1535 1778 102572078 102571835 8.120000e-98 368.0
20 TraesCS2A01G141600 chr7D 88.636 88 9 1 564 651 590081495 590081581 7.030000e-19 106.0
21 TraesCS2A01G141600 chr7D 86.207 87 12 0 563 649 615787355 615787269 1.520000e-15 95.3
22 TraesCS2A01G141600 chr7D 97.368 38 1 0 4503 4540 245489308 245489345 1.190000e-06 65.8
23 TraesCS2A01G141600 chr1D 84.330 351 37 6 134 484 372434627 372434295 1.380000e-85 327.0
24 TraesCS2A01G141600 chr1D 96.429 56 1 1 508 562 372434303 372434248 1.970000e-14 91.6
25 TraesCS2A01G141600 chr4A 90.698 215 15 1 1569 1778 35516843 35516629 1.090000e-71 281.0
26 TraesCS2A01G141600 chr4A 84.028 144 13 6 1366 1501 35516990 35516849 4.170000e-26 130.0
27 TraesCS2A01G141600 chr4A 95.918 49 2 0 5087 5135 85575266 85575314 4.260000e-11 80.5
28 TraesCS2A01G141600 chr7B 90.566 212 15 3 1569 1775 710456699 710456488 5.060000e-70 276.0
29 TraesCS2A01G141600 chr7B 85.366 82 8 4 4456 4536 20063982 20063904 1.190000e-11 82.4
30 TraesCS2A01G141600 chr6B 94.595 74 4 0 1707 1780 68915671 68915598 1.170000e-21 115.0
31 TraesCS2A01G141600 chr6B 84.932 73 11 0 579 651 288415552 288415480 1.980000e-09 75.0
32 TraesCS2A01G141600 chrUn 87.500 104 5 4 1309 1412 79256054 79256149 4.200000e-21 113.0
33 TraesCS2A01G141600 chrUn 95.385 65 3 0 1714 1778 79260174 79260238 2.530000e-18 104.0
34 TraesCS2A01G141600 chrUn 95.385 65 3 0 1714 1778 79291527 79291591 2.530000e-18 104.0
35 TraesCS2A01G141600 chrUn 90.789 76 6 1 1337 1412 79287627 79287701 3.270000e-17 100.0
36 TraesCS2A01G141600 chr5B 91.935 62 5 0 590 651 119135618 119135557 2.550000e-13 87.9
37 TraesCS2A01G141600 chr5B 86.486 74 10 0 576 649 568517906 568517979 1.190000e-11 82.4
38 TraesCS2A01G141600 chr5B 95.918 49 2 0 5087 5135 697172541 697172493 4.260000e-11 80.5
39 TraesCS2A01G141600 chr3A 84.043 94 9 5 4456 4547 740063430 740063519 9.160000e-13 86.1
40 TraesCS2A01G141600 chr3A 97.826 46 1 0 5090 5135 234955605 234955560 4.260000e-11 80.5
41 TraesCS2A01G141600 chr3A 95.918 49 1 1 5087 5135 410949127 410949080 1.530000e-10 78.7
42 TraesCS2A01G141600 chr3A 83.117 77 13 0 576 652 698174219 698174143 2.570000e-08 71.3
43 TraesCS2A01G141600 chr1B 97.872 47 1 0 5089 5135 306097521 306097567 1.190000e-11 82.4
44 TraesCS2A01G141600 chr1B 81.111 90 7 7 4456 4539 389954992 389954907 4.290000e-06 63.9
45 TraesCS2A01G141600 chr1B 89.583 48 0 5 4456 4498 328884557 328884510 7.180000e-04 56.5
46 TraesCS2A01G141600 chr1A 95.833 48 2 0 5088 5135 53467518 53467565 1.530000e-10 78.7
47 TraesCS2A01G141600 chr1A 97.778 45 1 0 5091 5135 344442513 344442469 1.530000e-10 78.7
48 TraesCS2A01G141600 chr3D 83.544 79 13 0 571 649 420012565 420012487 1.980000e-09 75.0
49 TraesCS2A01G141600 chr3B 84.337 83 6 4 4456 4536 676281195 676281272 1.980000e-09 75.0
50 TraesCS2A01G141600 chr6A 83.133 83 10 3 4456 4537 593838637 593838716 7.130000e-09 73.1
51 TraesCS2A01G141600 chr4B 93.478 46 1 2 4495 4539 558725820 558725776 3.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G141600 chr2A 86979804 86984938 5134 False 9483.0 9483 100.0000 1 5135 1 chr2A.!!$F1 5134
1 TraesCS2A01G141600 chr2D 86526376 86530728 4352 False 2815.0 4920 90.4295 649 5093 2 chr2D.!!$F2 4444
2 TraesCS2A01G141600 chr2B 139397633 139401802 4169 False 1010.6 2034 90.2126 1 5090 5 chr2B.!!$F2 5089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.037605 ATGACCTCAAACGGACGTCC 60.038 55.0 25.28 25.28 32.52 4.79 F
180 181 0.170339 GGGTAGCAAAACGGACATGC 59.830 55.0 0.00 0.00 40.34 4.06 F
632 633 0.179040 TCCGGATAAAATGGGGTCGC 60.179 55.0 0.00 0.00 0.00 5.19 F
2205 2282 0.107508 GACCCAAGCAGCAGCATCTA 60.108 55.0 3.17 0.00 45.49 1.98 F
2534 2670 0.249953 TAGCGCTTGTCAACCCGAAA 60.250 50.0 18.68 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 1979 0.095417 GGAACAGAAATGAGCGACGC 59.905 55.000 13.03 13.03 0.0 5.19 R
2163 2240 1.043673 AAGGACACGGGCTAGGCTAG 61.044 60.000 17.33 17.33 0.0 3.42 R
2417 2553 0.944386 GCAACAAGAAGCTTCCACGA 59.056 50.000 22.81 0.00 0.0 4.35 R
3791 3990 0.037303 AGGAGACGACCGTGTAGGAA 59.963 55.000 0.00 0.00 45.0 3.36 R
4418 4625 1.001048 CGTCGTGTACTGTTCCCTCAA 60.001 52.381 0.00 0.00 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 2.079925 GATTGTGTGCTCCTCCACTTC 58.920 52.381 0.00 0.00 36.68 3.01
90 91 0.836606 TTGTGTGCTCCTCCACTTCA 59.163 50.000 0.00 0.00 36.68 3.02
91 92 0.394192 TGTGTGCTCCTCCACTTCAG 59.606 55.000 0.00 0.00 36.68 3.02
92 93 0.321122 GTGTGCTCCTCCACTTCAGG 60.321 60.000 0.00 0.00 36.68 3.86
93 94 1.376553 GTGCTCCTCCACTTCAGGC 60.377 63.158 0.00 0.00 33.02 4.85
94 95 2.270527 GCTCCTCCACTTCAGGCC 59.729 66.667 0.00 0.00 0.00 5.19
95 96 2.596851 GCTCCTCCACTTCAGGCCA 61.597 63.158 5.01 0.00 0.00 5.36
96 97 2.069776 CTCCTCCACTTCAGGCCAA 58.930 57.895 5.01 0.00 0.00 4.52
97 98 0.322008 CTCCTCCACTTCAGGCCAAC 60.322 60.000 5.01 0.00 0.00 3.77
98 99 0.768221 TCCTCCACTTCAGGCCAACT 60.768 55.000 5.01 0.00 0.00 3.16
99 100 0.322008 CCTCCACTTCAGGCCAACTC 60.322 60.000 5.01 0.00 0.00 3.01
100 101 0.322008 CTCCACTTCAGGCCAACTCC 60.322 60.000 5.01 0.00 0.00 3.85
101 102 1.059584 TCCACTTCAGGCCAACTCCA 61.060 55.000 5.01 0.00 0.00 3.86
102 103 0.890996 CCACTTCAGGCCAACTCCAC 60.891 60.000 5.01 0.00 0.00 4.02
103 104 0.890996 CACTTCAGGCCAACTCCACC 60.891 60.000 5.01 0.00 0.00 4.61
104 105 1.672356 CTTCAGGCCAACTCCACCG 60.672 63.158 5.01 0.00 0.00 4.94
105 106 2.397413 CTTCAGGCCAACTCCACCGT 62.397 60.000 5.01 0.00 0.00 4.83
106 107 1.122632 TTCAGGCCAACTCCACCGTA 61.123 55.000 5.01 0.00 0.00 4.02
107 108 0.907704 TCAGGCCAACTCCACCGTAT 60.908 55.000 5.01 0.00 0.00 3.06
108 109 0.744414 CAGGCCAACTCCACCGTATG 60.744 60.000 5.01 0.00 0.00 2.39
109 110 0.907704 AGGCCAACTCCACCGTATGA 60.908 55.000 5.01 0.00 0.00 2.15
110 111 0.743345 GGCCAACTCCACCGTATGAC 60.743 60.000 0.00 0.00 0.00 3.06
111 112 0.743345 GCCAACTCCACCGTATGACC 60.743 60.000 0.00 0.00 0.00 4.02
112 113 0.902531 CCAACTCCACCGTATGACCT 59.097 55.000 0.00 0.00 0.00 3.85
113 114 1.134788 CCAACTCCACCGTATGACCTC 60.135 57.143 0.00 0.00 0.00 3.85
114 115 1.548719 CAACTCCACCGTATGACCTCA 59.451 52.381 0.00 0.00 0.00 3.86
115 116 1.933021 ACTCCACCGTATGACCTCAA 58.067 50.000 0.00 0.00 0.00 3.02
116 117 2.253610 ACTCCACCGTATGACCTCAAA 58.746 47.619 0.00 0.00 0.00 2.69
117 118 2.028385 ACTCCACCGTATGACCTCAAAC 60.028 50.000 0.00 0.00 0.00 2.93
118 119 1.067425 TCCACCGTATGACCTCAAACG 60.067 52.381 0.00 0.00 35.20 3.60
122 123 1.265568 CGTATGACCTCAAACGGACG 58.734 55.000 0.00 0.00 0.00 4.79
123 124 1.401931 CGTATGACCTCAAACGGACGT 60.402 52.381 0.00 0.00 0.00 4.34
124 125 2.257034 GTATGACCTCAAACGGACGTC 58.743 52.381 7.13 7.13 33.66 4.34
125 126 0.037605 ATGACCTCAAACGGACGTCC 60.038 55.000 25.28 25.28 32.52 4.79
126 127 1.373873 GACCTCAAACGGACGTCCC 60.374 63.158 28.52 11.28 0.00 4.46
127 128 2.047560 CCTCAAACGGACGTCCCC 60.048 66.667 28.52 6.07 0.00 4.81
128 129 2.580601 CCTCAAACGGACGTCCCCT 61.581 63.158 28.52 13.12 0.00 4.79
129 130 1.370064 CTCAAACGGACGTCCCCTT 59.630 57.895 28.52 18.34 0.00 3.95
130 131 0.250166 CTCAAACGGACGTCCCCTTT 60.250 55.000 28.52 21.39 0.00 3.11
131 132 0.533308 TCAAACGGACGTCCCCTTTG 60.533 55.000 30.02 30.02 40.24 2.77
132 133 0.816421 CAAACGGACGTCCCCTTTGT 60.816 55.000 28.69 19.94 36.67 2.83
133 134 0.533531 AAACGGACGTCCCCTTTGTC 60.534 55.000 28.52 1.35 0.00 3.18
134 135 2.047560 CGGACGTCCCCTTTGTCC 60.048 66.667 28.52 1.12 46.91 4.02
135 136 2.047560 GGACGTCCCCTTTGTCCG 60.048 66.667 24.75 0.00 42.42 4.79
136 137 2.047560 GACGTCCCCTTTGTCCGG 60.048 66.667 3.51 0.00 0.00 5.14
137 138 2.524887 ACGTCCCCTTTGTCCGGA 60.525 61.111 0.00 0.00 0.00 5.14
138 139 1.896122 GACGTCCCCTTTGTCCGGAT 61.896 60.000 7.81 0.00 0.00 4.18
139 140 1.298667 CGTCCCCTTTGTCCGGATT 59.701 57.895 7.81 0.00 0.00 3.01
140 141 0.322187 CGTCCCCTTTGTCCGGATTT 60.322 55.000 7.81 0.00 0.00 2.17
141 142 1.460504 GTCCCCTTTGTCCGGATTTC 58.539 55.000 7.81 0.00 0.00 2.17
142 143 1.068948 TCCCCTTTGTCCGGATTTCA 58.931 50.000 7.81 0.00 0.00 2.69
143 144 1.638589 TCCCCTTTGTCCGGATTTCAT 59.361 47.619 7.81 0.00 0.00 2.57
144 145 2.024414 CCCCTTTGTCCGGATTTCATC 58.976 52.381 7.81 0.00 0.00 2.92
145 146 2.024414 CCCTTTGTCCGGATTTCATCC 58.976 52.381 7.81 0.00 46.22 3.51
157 158 3.312697 GGATTTCATCCGTTTGAGGTAGC 59.687 47.826 0.00 0.00 40.13 3.58
158 159 3.410631 TTTCATCCGTTTGAGGTAGCA 57.589 42.857 0.00 0.00 0.00 3.49
159 160 3.410631 TTCATCCGTTTGAGGTAGCAA 57.589 42.857 0.00 0.00 0.00 3.91
160 161 3.627395 TCATCCGTTTGAGGTAGCAAT 57.373 42.857 0.00 0.00 0.00 3.56
161 162 3.270027 TCATCCGTTTGAGGTAGCAATG 58.730 45.455 0.00 0.00 0.00 2.82
162 163 2.107950 TCCGTTTGAGGTAGCAATGG 57.892 50.000 0.00 0.00 0.00 3.16
163 164 1.094785 CCGTTTGAGGTAGCAATGGG 58.905 55.000 0.00 0.00 0.00 4.00
164 165 1.613255 CCGTTTGAGGTAGCAATGGGT 60.613 52.381 0.00 0.00 0.00 4.51
165 166 2.355310 CCGTTTGAGGTAGCAATGGGTA 60.355 50.000 0.00 0.00 0.00 3.69
166 167 2.936498 CGTTTGAGGTAGCAATGGGTAG 59.064 50.000 0.00 0.00 0.00 3.18
167 168 2.683362 GTTTGAGGTAGCAATGGGTAGC 59.317 50.000 0.00 0.00 43.82 3.58
168 169 1.578897 TGAGGTAGCAATGGGTAGCA 58.421 50.000 10.94 0.00 45.40 3.49
169 170 1.912731 TGAGGTAGCAATGGGTAGCAA 59.087 47.619 10.94 0.00 45.40 3.91
170 171 2.307392 TGAGGTAGCAATGGGTAGCAAA 59.693 45.455 10.94 0.00 45.40 3.68
171 172 3.245087 TGAGGTAGCAATGGGTAGCAAAA 60.245 43.478 10.94 0.00 45.40 2.44
172 173 3.089284 AGGTAGCAATGGGTAGCAAAAC 58.911 45.455 10.94 0.00 45.40 2.43
173 174 2.159435 GGTAGCAATGGGTAGCAAAACG 60.159 50.000 3.62 0.00 43.18 3.60
174 175 0.887933 AGCAATGGGTAGCAAAACGG 59.112 50.000 0.00 0.00 0.00 4.44
175 176 0.885196 GCAATGGGTAGCAAAACGGA 59.115 50.000 0.00 0.00 0.00 4.69
176 177 1.402325 GCAATGGGTAGCAAAACGGAC 60.402 52.381 0.00 0.00 0.00 4.79
177 178 1.883275 CAATGGGTAGCAAAACGGACA 59.117 47.619 0.00 0.00 0.00 4.02
178 179 2.491693 CAATGGGTAGCAAAACGGACAT 59.508 45.455 0.00 0.00 0.00 3.06
179 180 1.529226 TGGGTAGCAAAACGGACATG 58.471 50.000 0.00 0.00 0.00 3.21
180 181 0.170339 GGGTAGCAAAACGGACATGC 59.830 55.000 0.00 0.00 40.34 4.06
181 182 0.179200 GGTAGCAAAACGGACATGCG 60.179 55.000 0.00 0.00 44.60 4.73
182 183 0.515564 GTAGCAAAACGGACATGCGT 59.484 50.000 0.00 0.00 44.60 5.24
183 184 0.515127 TAGCAAAACGGACATGCGTG 59.485 50.000 3.82 3.82 44.60 5.34
184 185 1.008995 GCAAAACGGACATGCGTGT 60.009 52.632 12.38 12.38 42.49 4.49
192 193 4.002506 ACATGCGTGTCCGGCTCA 62.003 61.111 5.51 0.00 31.41 4.26
193 194 2.512286 CATGCGTGTCCGGCTCAT 60.512 61.111 0.00 0.00 33.68 2.90
194 195 2.512286 ATGCGTGTCCGGCTCATG 60.512 61.111 0.00 5.41 33.68 3.07
195 196 3.315142 ATGCGTGTCCGGCTCATGT 62.315 57.895 16.10 0.36 33.68 3.21
196 197 2.742372 GCGTGTCCGGCTCATGTT 60.742 61.111 16.10 0.00 33.68 2.71
197 198 3.027170 GCGTGTCCGGCTCATGTTG 62.027 63.158 16.10 4.55 33.68 3.33
198 199 2.390599 CGTGTCCGGCTCATGTTGG 61.391 63.158 0.00 0.00 0.00 3.77
199 200 1.003839 GTGTCCGGCTCATGTTGGA 60.004 57.895 0.00 0.00 0.00 3.53
200 201 1.021390 GTGTCCGGCTCATGTTGGAG 61.021 60.000 0.00 0.00 37.97 3.86
201 202 1.450312 GTCCGGCTCATGTTGGAGG 60.450 63.158 0.00 0.00 35.41 4.30
205 206 3.595819 GCTCATGTTGGAGGCACC 58.404 61.111 0.00 0.00 35.41 5.01
206 207 2.048603 GCTCATGTTGGAGGCACCC 61.049 63.158 0.00 0.00 38.00 4.61
207 208 1.379916 CTCATGTTGGAGGCACCCA 59.620 57.895 0.00 0.00 38.00 4.51
208 209 0.679002 CTCATGTTGGAGGCACCCAG 60.679 60.000 0.00 0.00 37.53 4.45
209 210 1.075482 CATGTTGGAGGCACCCAGT 59.925 57.895 0.00 0.00 37.53 4.00
210 211 1.075482 ATGTTGGAGGCACCCAGTG 59.925 57.895 0.00 0.00 37.53 3.66
224 225 3.393360 AGTGCAGCTGACTACCCC 58.607 61.111 20.43 0.00 0.00 4.95
225 226 1.536418 AGTGCAGCTGACTACCCCA 60.536 57.895 20.43 0.00 0.00 4.96
226 227 1.127567 AGTGCAGCTGACTACCCCAA 61.128 55.000 20.43 0.00 0.00 4.12
227 228 0.250727 GTGCAGCTGACTACCCCAAA 60.251 55.000 20.43 0.00 0.00 3.28
228 229 0.476338 TGCAGCTGACTACCCCAAAA 59.524 50.000 20.43 0.00 0.00 2.44
229 230 1.075374 TGCAGCTGACTACCCCAAAAT 59.925 47.619 20.43 0.00 0.00 1.82
230 231 2.307392 TGCAGCTGACTACCCCAAAATA 59.693 45.455 20.43 0.00 0.00 1.40
231 232 3.053693 TGCAGCTGACTACCCCAAAATAT 60.054 43.478 20.43 0.00 0.00 1.28
232 233 3.565902 GCAGCTGACTACCCCAAAATATC 59.434 47.826 20.43 0.00 0.00 1.63
233 234 4.687219 GCAGCTGACTACCCCAAAATATCT 60.687 45.833 20.43 0.00 0.00 1.98
234 235 4.818546 CAGCTGACTACCCCAAAATATCTG 59.181 45.833 8.42 0.00 0.00 2.90
235 236 3.565902 GCTGACTACCCCAAAATATCTGC 59.434 47.826 0.00 0.00 0.00 4.26
236 237 4.137543 CTGACTACCCCAAAATATCTGCC 58.862 47.826 0.00 0.00 0.00 4.85
237 238 3.785887 TGACTACCCCAAAATATCTGCCT 59.214 43.478 0.00 0.00 0.00 4.75
238 239 4.137543 GACTACCCCAAAATATCTGCCTG 58.862 47.826 0.00 0.00 0.00 4.85
239 240 1.780503 ACCCCAAAATATCTGCCTGC 58.219 50.000 0.00 0.00 0.00 4.85
240 241 1.006998 ACCCCAAAATATCTGCCTGCA 59.993 47.619 0.00 0.00 0.00 4.41
241 242 2.322658 CCCCAAAATATCTGCCTGCAT 58.677 47.619 0.00 0.00 0.00 3.96
242 243 2.701951 CCCCAAAATATCTGCCTGCATT 59.298 45.455 0.00 0.00 0.00 3.56
243 244 3.135167 CCCCAAAATATCTGCCTGCATTT 59.865 43.478 0.00 0.00 0.00 2.32
244 245 4.384427 CCCCAAAATATCTGCCTGCATTTT 60.384 41.667 0.00 0.00 32.29 1.82
245 246 4.573201 CCCAAAATATCTGCCTGCATTTTG 59.427 41.667 16.21 16.21 43.27 2.44
246 247 5.728351 CAAAATATCTGCCTGCATTTTGG 57.272 39.130 15.70 0.00 41.42 3.28
251 252 2.046988 GCCTGCATTTTGGCCCAC 60.047 61.111 0.00 0.00 43.11 4.61
252 253 2.262292 CCTGCATTTTGGCCCACG 59.738 61.111 0.00 0.00 0.00 4.94
253 254 2.573083 CCTGCATTTTGGCCCACGT 61.573 57.895 0.00 0.00 0.00 4.49
254 255 1.080569 CTGCATTTTGGCCCACGTC 60.081 57.895 0.00 0.00 0.00 4.34
255 256 1.526575 CTGCATTTTGGCCCACGTCT 61.527 55.000 0.00 0.00 0.00 4.18
256 257 1.080569 GCATTTTGGCCCACGTCTG 60.081 57.895 0.00 0.00 0.00 3.51
257 258 1.080569 CATTTTGGCCCACGTCTGC 60.081 57.895 0.00 0.00 0.00 4.26
258 259 2.625823 ATTTTGGCCCACGTCTGCG 61.626 57.895 0.00 0.00 44.93 5.18
264 265 4.457496 CCCACGTCTGCGCCTCAT 62.457 66.667 4.18 0.00 42.83 2.90
265 266 2.887568 CCACGTCTGCGCCTCATC 60.888 66.667 4.18 0.00 42.83 2.92
266 267 2.887568 CACGTCTGCGCCTCATCC 60.888 66.667 4.18 0.00 42.83 3.51
267 268 4.498520 ACGTCTGCGCCTCATCCG 62.499 66.667 4.18 0.83 42.83 4.18
274 275 4.776322 CGCCTCATCCGCCCACAA 62.776 66.667 0.00 0.00 0.00 3.33
275 276 2.825836 GCCTCATCCGCCCACAAG 60.826 66.667 0.00 0.00 0.00 3.16
276 277 2.825836 CCTCATCCGCCCACAAGC 60.826 66.667 0.00 0.00 0.00 4.01
277 278 2.270205 CTCATCCGCCCACAAGCT 59.730 61.111 0.00 0.00 0.00 3.74
278 279 1.817099 CTCATCCGCCCACAAGCTC 60.817 63.158 0.00 0.00 0.00 4.09
279 280 3.197790 CATCCGCCCACAAGCTCG 61.198 66.667 0.00 0.00 0.00 5.03
324 325 4.814294 GTGCTCGCCGGGGTGTAG 62.814 72.222 19.13 9.85 0.00 2.74
327 328 4.514577 CTCGCCGGGGTGTAGCAG 62.515 72.222 19.13 3.17 0.00 4.24
330 331 4.715523 GCCGGGGTGTAGCAGCAA 62.716 66.667 2.18 0.00 33.07 3.91
331 332 2.746277 CCGGGGTGTAGCAGCAAC 60.746 66.667 0.00 0.00 33.07 4.17
332 333 2.031919 CGGGGTGTAGCAGCAACA 59.968 61.111 0.00 0.00 33.07 3.33
333 334 2.325082 CGGGGTGTAGCAGCAACAC 61.325 63.158 0.00 0.00 45.21 3.32
336 337 3.253955 GTGTAGCAGCAACACCCG 58.746 61.111 0.00 0.00 41.10 5.28
337 338 1.301401 GTGTAGCAGCAACACCCGA 60.301 57.895 0.00 0.00 41.10 5.14
338 339 1.005037 TGTAGCAGCAACACCCGAG 60.005 57.895 0.00 0.00 0.00 4.63
339 340 2.047274 TAGCAGCAACACCCGAGC 60.047 61.111 0.00 0.00 0.00 5.03
340 341 2.583441 TAGCAGCAACACCCGAGCT 61.583 57.895 0.00 0.00 39.63 4.09
341 342 2.507110 TAGCAGCAACACCCGAGCTC 62.507 60.000 2.73 2.73 36.26 4.09
342 343 3.114616 CAGCAACACCCGAGCTCG 61.115 66.667 29.06 29.06 36.26 5.03
370 371 4.446413 CGTACCTGCCCACCCGAC 62.446 72.222 0.00 0.00 0.00 4.79
371 372 3.001406 GTACCTGCCCACCCGACT 61.001 66.667 0.00 0.00 0.00 4.18
372 373 3.000819 TACCTGCCCACCCGACTG 61.001 66.667 0.00 0.00 0.00 3.51
400 401 4.662961 CCACGCTCGCCACACAGA 62.663 66.667 0.00 0.00 0.00 3.41
401 402 2.433145 CACGCTCGCCACACAGAT 60.433 61.111 0.00 0.00 0.00 2.90
402 403 2.433145 ACGCTCGCCACACAGATG 60.433 61.111 0.00 0.00 0.00 2.90
403 404 2.433145 CGCTCGCCACACAGATGT 60.433 61.111 0.00 0.00 40.80 3.06
404 405 2.447887 CGCTCGCCACACAGATGTC 61.448 63.158 0.00 0.00 36.72 3.06
405 406 2.447887 GCTCGCCACACAGATGTCG 61.448 63.158 0.00 0.00 36.72 4.35
406 407 2.432456 TCGCCACACAGATGTCGC 60.432 61.111 0.00 0.00 39.36 5.19
407 408 2.738139 CGCCACACAGATGTCGCA 60.738 61.111 0.00 0.00 42.54 5.10
408 409 2.733671 CGCCACACAGATGTCGCAG 61.734 63.158 0.00 0.00 42.54 5.18
409 410 3.031964 GCCACACAGATGTCGCAGC 62.032 63.158 0.00 0.00 42.05 5.25
410 411 1.375140 CCACACAGATGTCGCAGCT 60.375 57.895 0.00 0.00 36.72 4.24
414 415 3.396751 CAGATGTCGCAGCTGCTC 58.603 61.111 34.22 24.68 40.91 4.26
415 416 2.202716 AGATGTCGCAGCTGCTCG 60.203 61.111 34.22 21.04 39.32 5.03
416 417 3.922893 GATGTCGCAGCTGCTCGC 61.923 66.667 34.22 23.34 39.32 5.03
532 533 2.502510 GCGAAGTTGCGGCACATG 60.503 61.111 0.05 0.00 0.00 3.21
533 534 2.502510 CGAAGTTGCGGCACATGC 60.503 61.111 0.05 0.00 41.14 4.06
534 535 2.644418 GAAGTTGCGGCACATGCA 59.356 55.556 0.05 0.00 44.36 3.96
535 536 1.443194 GAAGTTGCGGCACATGCAG 60.443 57.895 0.05 2.58 44.28 4.41
542 543 4.471726 GGCACATGCAGCAGCGAC 62.472 66.667 12.17 0.00 46.23 5.19
543 544 4.806481 GCACATGCAGCAGCGACG 62.806 66.667 0.00 0.00 46.23 5.12
544 545 4.156622 CACATGCAGCAGCGACGG 62.157 66.667 0.00 0.00 46.23 4.79
568 569 4.740235 GCTAGCTAAGCGGGTCTG 57.260 61.111 7.70 0.00 42.53 3.51
569 570 1.592939 GCTAGCTAAGCGGGTCTGC 60.593 63.158 7.70 0.00 42.53 4.26
570 571 1.068250 CTAGCTAAGCGGGTCTGCC 59.932 63.158 0.00 0.00 34.65 4.85
571 572 2.685387 CTAGCTAAGCGGGTCTGCCG 62.685 65.000 0.00 0.00 34.97 5.69
572 573 4.452733 GCTAAGCGGGTCTGCCGT 62.453 66.667 0.00 0.00 34.97 5.68
573 574 2.264794 CTAAGCGGGTCTGCCGTT 59.735 61.111 0.00 0.00 34.97 4.44
574 575 1.514087 CTAAGCGGGTCTGCCGTTA 59.486 57.895 0.00 0.00 34.97 3.18
575 576 0.527817 CTAAGCGGGTCTGCCGTTAG 60.528 60.000 0.00 0.00 34.97 2.34
576 577 1.952102 TAAGCGGGTCTGCCGTTAGG 61.952 60.000 0.00 0.00 41.62 2.69
577 578 4.078516 GCGGGTCTGCCGTTAGGT 62.079 66.667 0.00 0.00 40.50 3.08
578 579 2.183555 CGGGTCTGCCGTTAGGTC 59.816 66.667 0.00 0.00 40.50 3.85
579 580 2.183555 GGGTCTGCCGTTAGGTCG 59.816 66.667 0.00 0.00 40.50 4.79
580 581 2.643232 GGGTCTGCCGTTAGGTCGT 61.643 63.158 0.00 0.00 40.50 4.34
581 582 1.153881 GGTCTGCCGTTAGGTCGTC 60.154 63.158 0.00 0.00 40.50 4.20
582 583 1.593296 GGTCTGCCGTTAGGTCGTCT 61.593 60.000 0.00 0.00 40.50 4.18
583 584 0.456312 GTCTGCCGTTAGGTCGTCTG 60.456 60.000 0.00 0.00 40.50 3.51
584 585 1.153823 CTGCCGTTAGGTCGTCTGG 60.154 63.158 0.00 0.00 40.50 3.86
585 586 1.874345 CTGCCGTTAGGTCGTCTGGT 61.874 60.000 0.00 0.00 40.50 4.00
586 587 0.608856 TGCCGTTAGGTCGTCTGGTA 60.609 55.000 0.00 0.00 40.50 3.25
587 588 0.743097 GCCGTTAGGTCGTCTGGTAT 59.257 55.000 0.00 0.00 40.50 2.73
588 589 1.535437 GCCGTTAGGTCGTCTGGTATG 60.535 57.143 0.00 0.00 40.50 2.39
589 590 1.747355 CCGTTAGGTCGTCTGGTATGT 59.253 52.381 0.00 0.00 0.00 2.29
590 591 2.223433 CCGTTAGGTCGTCTGGTATGTC 60.223 54.545 0.00 0.00 0.00 3.06
591 592 2.223433 CGTTAGGTCGTCTGGTATGTCC 60.223 54.545 0.00 0.00 0.00 4.02
592 593 1.671979 TAGGTCGTCTGGTATGTCCG 58.328 55.000 0.00 0.00 39.52 4.79
593 594 0.323178 AGGTCGTCTGGTATGTCCGT 60.323 55.000 0.00 0.00 39.52 4.69
594 595 0.529378 GGTCGTCTGGTATGTCCGTT 59.471 55.000 0.00 0.00 39.52 4.44
595 596 1.067354 GGTCGTCTGGTATGTCCGTTT 60.067 52.381 0.00 0.00 39.52 3.60
596 597 2.611224 GGTCGTCTGGTATGTCCGTTTT 60.611 50.000 0.00 0.00 39.52 2.43
597 598 3.367292 GGTCGTCTGGTATGTCCGTTTTA 60.367 47.826 0.00 0.00 39.52 1.52
598 599 4.427312 GTCGTCTGGTATGTCCGTTTTAT 58.573 43.478 0.00 0.00 39.52 1.40
599 600 4.501921 GTCGTCTGGTATGTCCGTTTTATC 59.498 45.833 0.00 0.00 39.52 1.75
600 601 4.400251 TCGTCTGGTATGTCCGTTTTATCT 59.600 41.667 0.00 0.00 39.52 1.98
601 602 5.105635 TCGTCTGGTATGTCCGTTTTATCTT 60.106 40.000 0.00 0.00 39.52 2.40
602 603 5.005394 CGTCTGGTATGTCCGTTTTATCTTG 59.995 44.000 0.00 0.00 39.52 3.02
603 604 6.103997 GTCTGGTATGTCCGTTTTATCTTGA 58.896 40.000 0.00 0.00 39.52 3.02
604 605 6.592607 GTCTGGTATGTCCGTTTTATCTTGAA 59.407 38.462 0.00 0.00 39.52 2.69
605 606 6.592607 TCTGGTATGTCCGTTTTATCTTGAAC 59.407 38.462 0.00 0.00 39.52 3.18
606 607 5.349270 TGGTATGTCCGTTTTATCTTGAACG 59.651 40.000 1.98 1.98 45.89 3.95
611 612 2.754478 CGTTTTATCTTGAACGGACGC 58.246 47.619 1.06 0.00 43.44 5.19
612 613 2.156117 CGTTTTATCTTGAACGGACGCA 59.844 45.455 1.06 0.00 43.44 5.24
613 614 3.181524 CGTTTTATCTTGAACGGACGCAT 60.182 43.478 1.06 0.00 43.44 4.73
614 615 4.331962 GTTTTATCTTGAACGGACGCATC 58.668 43.478 0.00 0.00 0.00 3.91
615 616 2.218953 TATCTTGAACGGACGCATCC 57.781 50.000 0.00 0.00 42.28 3.51
625 626 2.969443 GGACGCATCCGGATAAAATG 57.031 50.000 18.63 7.19 39.22 2.32
626 627 1.535462 GGACGCATCCGGATAAAATGG 59.465 52.381 18.63 4.57 39.22 3.16
627 628 1.535462 GACGCATCCGGATAAAATGGG 59.465 52.381 18.63 16.63 39.22 4.00
628 629 0.881118 CGCATCCGGATAAAATGGGG 59.119 55.000 18.63 8.26 31.73 4.96
629 630 1.817740 CGCATCCGGATAAAATGGGGT 60.818 52.381 18.63 0.00 31.73 4.95
630 631 1.886542 GCATCCGGATAAAATGGGGTC 59.113 52.381 18.63 0.00 0.00 4.46
631 632 2.151202 CATCCGGATAAAATGGGGTCG 58.849 52.381 18.63 0.00 0.00 4.79
632 633 0.179040 TCCGGATAAAATGGGGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
633 634 1.503818 CCGGATAAAATGGGGTCGCG 61.504 60.000 0.00 0.00 0.00 5.87
634 635 1.652563 GGATAAAATGGGGTCGCGC 59.347 57.895 0.00 0.00 0.00 6.86
635 636 1.278637 GATAAAATGGGGTCGCGCG 59.721 57.895 26.76 26.76 0.00 6.86
636 637 2.113131 GATAAAATGGGGTCGCGCGG 62.113 60.000 31.69 11.75 0.00 6.46
637 638 2.879813 ATAAAATGGGGTCGCGCGGT 62.880 55.000 31.69 6.43 0.00 5.68
653 654 1.003233 GGTGGAGTTGGCCTCACTC 60.003 63.158 21.49 21.49 42.40 3.51
659 660 1.228154 GTTGGCCTCACTCCGGTTT 60.228 57.895 3.32 0.00 0.00 3.27
679 680 2.119495 TGGCAGAGGAAGAAGATACCC 58.881 52.381 0.00 0.00 0.00 3.69
928 949 0.179468 GCCGGCCATGGAGTAAGTAA 59.821 55.000 18.11 0.00 0.00 2.24
929 950 1.810412 GCCGGCCATGGAGTAAGTAAG 60.810 57.143 18.11 0.00 0.00 2.34
930 951 1.485066 CCGGCCATGGAGTAAGTAAGT 59.515 52.381 18.40 0.00 0.00 2.24
931 952 2.696707 CCGGCCATGGAGTAAGTAAGTA 59.303 50.000 18.40 0.00 0.00 2.24
932 953 3.133362 CCGGCCATGGAGTAAGTAAGTAA 59.867 47.826 18.40 0.00 0.00 2.24
933 954 4.369182 CGGCCATGGAGTAAGTAAGTAAG 58.631 47.826 18.40 0.00 0.00 2.34
934 955 4.127907 GGCCATGGAGTAAGTAAGTAAGC 58.872 47.826 18.40 0.00 0.00 3.09
935 956 4.383770 GGCCATGGAGTAAGTAAGTAAGCA 60.384 45.833 18.40 0.00 0.00 3.91
979 1004 3.308705 GCCAAAGCTTGCCTGCCT 61.309 61.111 0.00 0.00 35.50 4.75
1075 1114 0.307760 CGCTTTTCTTGCACCGACTT 59.692 50.000 0.00 0.00 0.00 3.01
1626 1683 2.268920 GGAAGCCGCATCAGGTGA 59.731 61.111 0.00 0.00 0.00 4.02
1630 1687 3.643978 GCCGCATCAGGTGATCGC 61.644 66.667 0.00 0.00 31.21 4.58
1912 1975 4.361971 TCCGTCAGTCGCCCTCCT 62.362 66.667 0.00 0.00 38.35 3.69
1913 1976 2.439701 CCGTCAGTCGCCCTCCTA 60.440 66.667 0.00 0.00 38.35 2.94
1916 1979 2.439701 TCAGTCGCCCTCCTACGG 60.440 66.667 0.00 0.00 0.00 4.02
1925 2002 3.506096 CTCCTACGGCGTCGCTCA 61.506 66.667 19.21 0.00 40.63 4.26
1932 2009 2.094659 CGGCGTCGCTCATTTCTGT 61.095 57.895 18.11 0.00 0.00 3.41
2005 2082 3.056107 TCCATCCTCTTCCACTGTAAACG 60.056 47.826 0.00 0.00 0.00 3.60
2014 2091 2.118683 CCACTGTAAACGAACGAACGA 58.881 47.619 11.97 0.00 37.03 3.85
2017 2094 2.535574 ACTGTAAACGAACGAACGAACC 59.464 45.455 11.97 0.21 37.03 3.62
2019 2096 1.857837 GTAAACGAACGAACGAACCCA 59.142 47.619 11.97 0.00 37.03 4.51
2021 2098 0.459934 AACGAACGAACGAACCCACA 60.460 50.000 11.97 0.00 37.03 4.17
2022 2099 0.872881 ACGAACGAACGAACCCACAG 60.873 55.000 11.97 0.00 37.03 3.66
2199 2276 0.239347 CTTTTCGACCCAAGCAGCAG 59.761 55.000 0.00 0.00 0.00 4.24
2201 2278 2.956799 TTTCGACCCAAGCAGCAGCA 62.957 55.000 3.17 0.00 45.49 4.41
2202 2279 2.749044 CGACCCAAGCAGCAGCAT 60.749 61.111 3.17 0.00 45.49 3.79
2203 2280 2.758089 CGACCCAAGCAGCAGCATC 61.758 63.158 3.17 0.00 45.49 3.91
2204 2281 1.378250 GACCCAAGCAGCAGCATCT 60.378 57.895 3.17 0.00 45.49 2.90
2205 2282 0.107508 GACCCAAGCAGCAGCATCTA 60.108 55.000 3.17 0.00 45.49 1.98
2208 2285 1.139654 CCCAAGCAGCAGCATCTACTA 59.860 52.381 3.17 0.00 45.49 1.82
2212 2289 4.047822 CAAGCAGCAGCATCTACTACTAC 58.952 47.826 3.17 0.00 45.49 2.73
2213 2290 2.625790 AGCAGCAGCATCTACTACTACC 59.374 50.000 3.17 0.00 45.49 3.18
2216 2293 3.634448 CAGCAGCATCTACTACTACCACT 59.366 47.826 0.00 0.00 0.00 4.00
2246 2323 2.222729 GCTCGTTTTCGCATGAACGTAT 60.223 45.455 14.66 0.00 46.26 3.06
2322 2441 2.105323 GCATTATTGCCGGTCGAAAG 57.895 50.000 1.90 0.00 43.38 2.62
2323 2442 1.668751 GCATTATTGCCGGTCGAAAGA 59.331 47.619 1.90 0.00 43.38 2.52
2324 2443 2.096819 GCATTATTGCCGGTCGAAAGAA 59.903 45.455 1.90 0.00 42.28 2.52
2325 2444 3.788797 GCATTATTGCCGGTCGAAAGAAG 60.789 47.826 1.90 0.00 42.28 2.85
2327 2446 1.305930 ATTGCCGGTCGAAAGAAGCC 61.306 55.000 1.90 0.00 45.01 4.35
2355 2488 5.198965 CAATCTCCATGGAAATTCCTGAGT 58.801 41.667 17.00 3.91 37.46 3.41
2384 2517 7.821846 CAGACATAACCTTAAAGCTTCTTCTCT 59.178 37.037 0.00 0.00 0.00 3.10
2443 2579 2.276732 AGCTTCTTGTTGCTTAGCCA 57.723 45.000 0.29 0.00 35.86 4.75
2481 2617 1.082104 CGTGTTCCGAGCCAAAAGC 60.082 57.895 0.00 0.00 44.25 3.51
2533 2669 0.669318 CTAGCGCTTGTCAACCCGAA 60.669 55.000 18.68 0.00 0.00 4.30
2534 2670 0.249953 TAGCGCTTGTCAACCCGAAA 60.250 50.000 18.68 0.00 0.00 3.46
2537 2673 1.658114 GCTTGTCAACCCGAAACCC 59.342 57.895 0.00 0.00 0.00 4.11
2538 2674 1.104577 GCTTGTCAACCCGAAACCCA 61.105 55.000 0.00 0.00 0.00 4.51
2539 2675 0.666374 CTTGTCAACCCGAAACCCAC 59.334 55.000 0.00 0.00 0.00 4.61
2540 2676 1.096386 TTGTCAACCCGAAACCCACG 61.096 55.000 0.00 0.00 0.00 4.94
2541 2677 2.592287 TCAACCCGAAACCCACGC 60.592 61.111 0.00 0.00 0.00 5.34
2548 2684 3.047877 GAAACCCACGCCCGACAG 61.048 66.667 0.00 0.00 0.00 3.51
2622 2759 4.082733 GCTAAACTGCCTCTTTGTTTAGGG 60.083 45.833 19.60 4.36 46.18 3.53
2696 2844 2.046796 ACCACACACGCACACACA 60.047 55.556 0.00 0.00 0.00 3.72
2711 2859 4.545610 CACACACACTCTTTCTCTCTCTC 58.454 47.826 0.00 0.00 0.00 3.20
2717 2865 4.527816 ACACTCTTTCTCTCTCTCTGCATT 59.472 41.667 0.00 0.00 0.00 3.56
2770 2918 1.032114 CCCGAGGGTCCATGCTTTTC 61.032 60.000 0.00 0.00 0.00 2.29
2813 2962 0.458543 CCGTGACTGATCAACCGGAG 60.459 60.000 9.46 0.00 43.74 4.63
2826 3003 1.946984 ACCGGAGTCCATGGTTAGAA 58.053 50.000 9.46 0.00 29.87 2.10
2837 3020 3.184541 CATGGTTAGAACGACGGTTAGG 58.815 50.000 0.00 0.00 36.24 2.69
2841 3024 0.527565 TAGAACGACGGTTAGGGTGC 59.472 55.000 0.00 0.00 36.24 5.01
2922 3108 0.657840 GGCTTCAATTCGGATCCACG 59.342 55.000 13.41 0.00 0.00 4.94
2923 3109 0.657840 GCTTCAATTCGGATCCACGG 59.342 55.000 13.41 0.00 0.00 4.94
2924 3110 1.742411 GCTTCAATTCGGATCCACGGA 60.742 52.381 13.41 0.00 0.00 4.69
2925 3111 1.933853 CTTCAATTCGGATCCACGGAC 59.066 52.381 13.41 0.00 0.00 4.79
2952 3138 4.738998 CCCACGGCCATGCAAGGA 62.739 66.667 13.26 0.00 0.00 3.36
2953 3139 3.136123 CCACGGCCATGCAAGGAG 61.136 66.667 13.26 7.25 0.00 3.69
2966 3152 0.535102 CAAGGAGGCCACGACAAGTT 60.535 55.000 5.01 0.00 0.00 2.66
2998 3184 7.273598 ACTGCGTTTTTGTTTTTGTTTTTGTTT 59.726 25.926 0.00 0.00 0.00 2.83
3018 3204 1.635844 TTGTGTCCGTGTGATATCGC 58.364 50.000 9.41 9.41 0.00 4.58
3039 3225 6.379386 TCGCGATCACGAAATCTCTAATTAT 58.621 36.000 3.71 0.00 39.54 1.28
3040 3226 7.524065 TCGCGATCACGAAATCTCTAATTATA 58.476 34.615 3.71 0.00 39.54 0.98
3097 3291 2.743928 CGGCCTCTGTTGCTGTCC 60.744 66.667 0.00 0.00 0.00 4.02
3100 3294 1.739562 GCCTCTGTTGCTGTCCGAG 60.740 63.158 0.00 0.00 0.00 4.63
3111 3305 0.809241 CTGTCCGAGCTTGATGGAGC 60.809 60.000 1.22 0.00 43.02 4.70
3122 3316 3.391665 GATGGAGCCCCTGTCACCG 62.392 68.421 0.00 0.00 0.00 4.94
3147 3341 4.433186 TTTAATGCTGAATGGTTGTCGG 57.567 40.909 0.00 0.00 0.00 4.79
3149 3343 0.327924 ATGCTGAATGGTTGTCGGGA 59.672 50.000 0.00 0.00 0.00 5.14
3156 3350 1.358152 ATGGTTGTCGGGAAGGAGAA 58.642 50.000 0.00 0.00 0.00 2.87
3188 3382 2.434884 AAGAGGTGTGATGGCGCG 60.435 61.111 0.00 0.00 0.00 6.86
3409 3603 2.254459 CGACATCGTCAAGGTCTTCAG 58.746 52.381 0.00 0.00 32.09 3.02
3427 3621 3.926616 TCAGTCTTCTCCGAATGGTTTC 58.073 45.455 0.00 0.00 36.30 2.78
3456 3650 4.746535 TGGACATTACGAGGCAATTCTA 57.253 40.909 0.00 0.00 0.00 2.10
3469 3663 6.461110 AGGCAATTCTAATGATCTTTGGTG 57.539 37.500 4.17 0.00 0.00 4.17
3470 3664 5.954150 AGGCAATTCTAATGATCTTTGGTGT 59.046 36.000 4.17 0.00 0.00 4.16
3548 3742 1.742308 AGTACCTCAAGGGGAAGCAA 58.258 50.000 0.29 0.00 40.27 3.91
3642 3836 3.818210 TGACTGACATGCCACGTTTTTAT 59.182 39.130 0.00 0.00 0.00 1.40
3643 3837 4.998033 TGACTGACATGCCACGTTTTTATA 59.002 37.500 0.00 0.00 0.00 0.98
3645 3839 5.938322 ACTGACATGCCACGTTTTTATAAG 58.062 37.500 0.00 0.00 0.00 1.73
3646 3840 5.106317 ACTGACATGCCACGTTTTTATAAGG 60.106 40.000 0.00 0.00 0.00 2.69
3649 3843 3.562567 TGCCACGTTTTTATAAGGCAC 57.437 42.857 7.79 0.00 46.25 5.01
3651 3845 3.057876 TGCCACGTTTTTATAAGGCACTG 60.058 43.478 7.79 0.00 46.25 3.66
3653 3847 4.557895 GCCACGTTTTTATAAGGCACTGTT 60.558 41.667 4.55 0.00 40.86 3.16
3675 3869 6.018262 TGTTAACAATGTCTGCTGTGTTACTC 60.018 38.462 5.64 3.40 36.46 2.59
3702 3901 7.936847 TGGTACTGAAATTACACTGAACTGAAT 59.063 33.333 0.00 0.00 0.00 2.57
3704 3903 9.209175 GTACTGAAATTACACTGAACTGAATCT 57.791 33.333 0.00 0.00 0.00 2.40
3791 3990 1.005394 CTACAAGTTCGTGCCGGGT 60.005 57.895 2.18 0.00 0.00 5.28
3839 4038 1.736645 GTCGGACCACCACATCGTG 60.737 63.158 0.00 0.00 35.59 4.35
3936 4135 1.340405 TGAAGATGAGCAAGAAGGGGC 60.340 52.381 0.00 0.00 0.00 5.80
3970 4169 1.608055 TGGGCGGCTAAATGATGATG 58.392 50.000 9.56 0.00 0.00 3.07
3971 4170 1.142667 TGGGCGGCTAAATGATGATGA 59.857 47.619 9.56 0.00 0.00 2.92
3973 4172 3.008923 TGGGCGGCTAAATGATGATGATA 59.991 43.478 9.56 0.00 0.00 2.15
3975 4174 4.256920 GGCGGCTAAATGATGATGATACT 58.743 43.478 0.00 0.00 0.00 2.12
3976 4175 4.331168 GGCGGCTAAATGATGATGATACTC 59.669 45.833 0.00 0.00 0.00 2.59
3977 4176 5.174395 GCGGCTAAATGATGATGATACTCT 58.826 41.667 0.00 0.00 0.00 3.24
3978 4177 5.063186 GCGGCTAAATGATGATGATACTCTG 59.937 44.000 0.00 0.00 0.00 3.35
3980 4179 6.090493 CGGCTAAATGATGATGATACTCTGTG 59.910 42.308 0.00 0.00 0.00 3.66
3981 4180 6.933521 GGCTAAATGATGATGATACTCTGTGT 59.066 38.462 0.00 0.00 0.00 3.72
3982 4181 7.443575 GGCTAAATGATGATGATACTCTGTGTT 59.556 37.037 0.00 0.00 0.00 3.32
3983 4182 9.481340 GCTAAATGATGATGATACTCTGTGTTA 57.519 33.333 0.00 0.00 0.00 2.41
4010 4209 5.021033 CTGGAGTCCTTCTCTAGTACGTA 57.979 47.826 11.33 0.00 43.72 3.57
4012 4211 4.223700 TGGAGTCCTTCTCTAGTACGTACA 59.776 45.833 26.55 12.17 42.40 2.90
4015 4214 6.018016 GGAGTCCTTCTCTAGTACGTACATTC 60.018 46.154 26.55 9.18 42.40 2.67
4054 4254 1.544724 TTGCCATTGTTGGTAGAGGC 58.455 50.000 0.00 0.00 45.57 4.70
4116 4316 0.322546 GGCTAGTGGTTGAAGTGGGG 60.323 60.000 0.00 0.00 0.00 4.96
4229 4433 0.958091 TGGCCCTGTTTTCACATTCG 59.042 50.000 0.00 0.00 30.39 3.34
4302 4506 1.881973 GAAGTGGATGCAGCACAAAGA 59.118 47.619 3.51 0.00 0.00 2.52
4303 4507 1.531423 AGTGGATGCAGCACAAAGAG 58.469 50.000 3.51 0.00 0.00 2.85
4314 4518 1.866880 GCACAAAGAGCTGGCAAACTG 60.867 52.381 0.00 0.00 0.00 3.16
4316 4520 1.406539 ACAAAGAGCTGGCAAACTGTG 59.593 47.619 0.00 0.00 0.00 3.66
4342 4546 2.819019 TCGTCTACCGAAATGTACACCA 59.181 45.455 0.00 0.00 44.03 4.17
4406 4611 5.793030 ACTTCAGTACTACAGTCTTTGCT 57.207 39.130 0.00 0.00 0.00 3.91
4408 4613 6.217294 ACTTCAGTACTACAGTCTTTGCTTC 58.783 40.000 0.00 0.00 0.00 3.86
4409 4614 5.784578 TCAGTACTACAGTCTTTGCTTCA 57.215 39.130 0.00 0.00 0.00 3.02
4411 4616 4.686554 CAGTACTACAGTCTTTGCTTCACC 59.313 45.833 0.00 0.00 0.00 4.02
4412 4617 3.838244 ACTACAGTCTTTGCTTCACCA 57.162 42.857 0.00 0.00 0.00 4.17
4418 4625 4.160252 ACAGTCTTTGCTTCACCATTGTTT 59.840 37.500 0.00 0.00 0.00 2.83
4453 4660 3.242511 ACACGACGAAGCCAACTTTTTAC 60.243 43.478 0.00 0.00 35.82 2.01
4454 4661 3.001939 CACGACGAAGCCAACTTTTTACT 59.998 43.478 0.00 0.00 35.82 2.24
4455 4662 3.246936 ACGACGAAGCCAACTTTTTACTC 59.753 43.478 0.00 0.00 35.82 2.59
4458 4665 3.813724 ACGAAGCCAACTTTTTACTCTCC 59.186 43.478 0.00 0.00 35.82 3.71
4459 4666 3.120649 CGAAGCCAACTTTTTACTCTCCG 60.121 47.826 0.00 0.00 35.82 4.63
4460 4667 3.487120 AGCCAACTTTTTACTCTCCGT 57.513 42.857 0.00 0.00 0.00 4.69
4461 4668 3.400255 AGCCAACTTTTTACTCTCCGTC 58.600 45.455 0.00 0.00 0.00 4.79
4462 4669 2.483106 GCCAACTTTTTACTCTCCGTCC 59.517 50.000 0.00 0.00 0.00 4.79
4464 4671 3.495453 CCAACTTTTTACTCTCCGTCCCA 60.495 47.826 0.00 0.00 0.00 4.37
4468 4675 5.382616 ACTTTTTACTCTCCGTCCCAAAAT 58.617 37.500 0.00 0.00 0.00 1.82
4470 4677 7.173032 ACTTTTTACTCTCCGTCCCAAAATAT 58.827 34.615 0.00 0.00 0.00 1.28
4471 4678 8.323567 ACTTTTTACTCTCCGTCCCAAAATATA 58.676 33.333 0.00 0.00 0.00 0.86
4472 4679 9.169592 CTTTTTACTCTCCGTCCCAAAATATAA 57.830 33.333 0.00 0.00 0.00 0.98
4473 4680 9.517868 TTTTTACTCTCCGTCCCAAAATATAAA 57.482 29.630 0.00 0.00 0.00 1.40
4474 4681 9.517868 TTTTACTCTCCGTCCCAAAATATAAAA 57.482 29.630 0.00 0.00 0.00 1.52
4475 4682 9.517868 TTTACTCTCCGTCCCAAAATATAAAAA 57.482 29.630 0.00 0.00 0.00 1.94
4476 4683 9.689501 TTACTCTCCGTCCCAAAATATAAAAAT 57.310 29.630 0.00 0.00 0.00 1.82
4477 4684 7.996385 ACTCTCCGTCCCAAAATATAAAAATG 58.004 34.615 0.00 0.00 0.00 2.32
4478 4685 7.614192 ACTCTCCGTCCCAAAATATAAAAATGT 59.386 33.333 0.00 0.00 0.00 2.71
4479 4686 8.356000 TCTCCGTCCCAAAATATAAAAATGTT 57.644 30.769 0.00 0.00 0.00 2.71
4480 4687 8.808092 TCTCCGTCCCAAAATATAAAAATGTTT 58.192 29.630 0.00 0.00 0.00 2.83
4481 4688 9.430623 CTCCGTCCCAAAATATAAAAATGTTTT 57.569 29.630 0.00 0.00 0.00 2.43
4482 4689 9.780186 TCCGTCCCAAAATATAAAAATGTTTTT 57.220 25.926 8.36 8.36 42.51 1.94
4532 4739 8.145316 CGTTTTTATATTATGAAACGGAGGGA 57.855 34.615 20.53 0.00 46.11 4.20
4533 4740 8.280497 CGTTTTTATATTATGAAACGGAGGGAG 58.720 37.037 20.53 3.88 46.11 4.30
4534 4741 9.117183 GTTTTTATATTATGAAACGGAGGGAGT 57.883 33.333 0.00 0.00 0.00 3.85
4538 4745 7.792364 ATATTATGAAACGGAGGGAGTATCA 57.208 36.000 0.00 0.00 36.25 2.15
4539 4746 6.688073 ATTATGAAACGGAGGGAGTATCAT 57.312 37.500 0.00 0.00 36.25 2.45
4540 4747 4.608948 ATGAAACGGAGGGAGTATCATC 57.391 45.455 0.00 0.00 36.25 2.92
4541 4748 2.361119 TGAAACGGAGGGAGTATCATCG 59.639 50.000 0.00 0.00 36.25 3.84
4542 4749 2.359981 AACGGAGGGAGTATCATCGA 57.640 50.000 0.00 0.00 36.25 3.59
4543 4750 2.359981 ACGGAGGGAGTATCATCGAA 57.640 50.000 0.00 0.00 36.25 3.71
4544 4751 2.231529 ACGGAGGGAGTATCATCGAAG 58.768 52.381 0.00 0.00 36.25 3.79
4545 4752 1.068194 CGGAGGGAGTATCATCGAAGC 60.068 57.143 0.00 0.00 36.25 3.86
4546 4753 1.964223 GGAGGGAGTATCATCGAAGCA 59.036 52.381 0.00 0.00 36.25 3.91
4552 4759 1.202580 AGTATCATCGAAGCAGGTGGC 60.203 52.381 0.00 0.00 45.30 5.01
4602 4809 1.517832 GTCTCCATCCTCACCGGTG 59.482 63.158 29.26 29.26 0.00 4.94
4696 4910 3.496130 ACGAGAGAAAAACACAGCAGATG 59.504 43.478 0.00 0.00 0.00 2.90
4805 5019 2.572191 TGTACACGGTGCTATGCTAC 57.428 50.000 8.30 2.89 0.00 3.58
4812 5026 2.695314 GTGCTATGCTACACCCAGC 58.305 57.895 0.00 0.00 42.15 4.85
4817 5031 2.665000 TGCTACACCCAGCAGAGC 59.335 61.111 0.00 0.00 46.41 4.09
4818 5032 2.216331 TGCTACACCCAGCAGAGCA 61.216 57.895 0.00 0.00 46.41 4.26
4819 5033 1.449246 GCTACACCCAGCAGAGCAG 60.449 63.158 0.00 0.00 41.40 4.24
4820 5034 1.978473 CTACACCCAGCAGAGCAGT 59.022 57.895 0.00 0.00 0.00 4.40
4821 5035 1.186200 CTACACCCAGCAGAGCAGTA 58.814 55.000 0.00 0.00 0.00 2.74
4822 5036 0.895530 TACACCCAGCAGAGCAGTAC 59.104 55.000 0.00 0.00 0.00 2.73
4823 5037 1.446792 CACCCAGCAGAGCAGTACG 60.447 63.158 0.00 0.00 0.00 3.67
4824 5038 1.908793 ACCCAGCAGAGCAGTACGT 60.909 57.895 0.00 0.00 0.00 3.57
4825 5039 0.611062 ACCCAGCAGAGCAGTACGTA 60.611 55.000 0.00 0.00 0.00 3.57
4826 5040 0.179134 CCCAGCAGAGCAGTACGTAC 60.179 60.000 18.10 18.10 0.00 3.67
4851 5065 1.099295 ATGCATGCATGGACGGACAG 61.099 55.000 31.74 0.00 35.03 3.51
4883 5097 5.100259 CGACCGTATGTATAATCATGGGTC 58.900 45.833 15.25 15.25 42.48 4.46
5007 5221 1.887242 TATTGCCATGCGGACGAGC 60.887 57.895 0.00 0.00 37.71 5.03
5011 5225 2.584418 CCATGCGGACGAGCTGAG 60.584 66.667 0.00 0.00 38.13 3.35
5013 5227 4.521062 ATGCGGACGAGCTGAGGC 62.521 66.667 0.00 0.00 38.13 4.70
5016 5230 4.504916 CGGACGAGCTGAGGCCTG 62.505 72.222 12.00 0.00 39.73 4.85
5017 5231 3.071206 GGACGAGCTGAGGCCTGA 61.071 66.667 12.00 0.00 39.73 3.86
5093 5308 5.186198 ACATGATCCCAGCAACTTAAGTAC 58.814 41.667 8.92 4.48 0.00 2.73
5094 5309 5.045578 ACATGATCCCAGCAACTTAAGTACT 60.046 40.000 8.92 6.90 0.00 2.73
5095 5310 5.086104 TGATCCCAGCAACTTAAGTACTC 57.914 43.478 8.92 1.21 0.00 2.59
5096 5311 4.530553 TGATCCCAGCAACTTAAGTACTCA 59.469 41.667 8.92 1.61 0.00 3.41
5097 5312 4.267349 TCCCAGCAACTTAAGTACTCAC 57.733 45.455 8.92 0.00 0.00 3.51
5098 5313 3.901844 TCCCAGCAACTTAAGTACTCACT 59.098 43.478 8.92 0.00 36.19 3.41
5099 5314 4.021368 TCCCAGCAACTTAAGTACTCACTC 60.021 45.833 8.92 0.00 32.29 3.51
5100 5315 4.246458 CCAGCAACTTAAGTACTCACTCC 58.754 47.826 8.92 0.00 32.29 3.85
5101 5316 3.921021 CAGCAACTTAAGTACTCACTCCG 59.079 47.826 8.92 0.00 32.29 4.63
5102 5317 3.573110 AGCAACTTAAGTACTCACTCCGT 59.427 43.478 8.92 0.00 32.29 4.69
5103 5318 4.038883 AGCAACTTAAGTACTCACTCCGTT 59.961 41.667 8.92 0.00 32.29 4.44
5104 5319 4.385146 GCAACTTAAGTACTCACTCCGTTC 59.615 45.833 8.92 0.00 32.29 3.95
5105 5320 4.780275 ACTTAAGTACTCACTCCGTTCC 57.220 45.455 6.26 0.00 32.29 3.62
5106 5321 3.190118 ACTTAAGTACTCACTCCGTTCCG 59.810 47.826 6.26 0.00 32.29 4.30
5107 5322 1.901591 AAGTACTCACTCCGTTCCGA 58.098 50.000 0.00 0.00 32.29 4.55
5108 5323 1.901591 AGTACTCACTCCGTTCCGAA 58.098 50.000 0.00 0.00 0.00 4.30
5109 5324 2.444421 AGTACTCACTCCGTTCCGAAT 58.556 47.619 0.00 0.00 0.00 3.34
5110 5325 2.824341 AGTACTCACTCCGTTCCGAATT 59.176 45.455 0.00 0.00 0.00 2.17
5111 5326 4.012374 AGTACTCACTCCGTTCCGAATTA 58.988 43.478 0.00 0.00 0.00 1.40
5112 5327 3.227810 ACTCACTCCGTTCCGAATTAC 57.772 47.619 0.00 0.00 0.00 1.89
5113 5328 2.824341 ACTCACTCCGTTCCGAATTACT 59.176 45.455 0.00 0.00 0.00 2.24
5114 5329 3.257624 ACTCACTCCGTTCCGAATTACTT 59.742 43.478 0.00 0.00 0.00 2.24
5115 5330 3.581755 TCACTCCGTTCCGAATTACTTG 58.418 45.455 0.00 0.00 0.00 3.16
5116 5331 3.006110 TCACTCCGTTCCGAATTACTTGT 59.994 43.478 0.00 0.00 0.00 3.16
5117 5332 3.367025 CACTCCGTTCCGAATTACTTGTC 59.633 47.826 0.00 0.00 0.00 3.18
5118 5333 3.257624 ACTCCGTTCCGAATTACTTGTCT 59.742 43.478 0.00 0.00 0.00 3.41
5119 5334 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
5120 5335 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
5121 5336 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
5122 5337 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
5123 5338 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
5124 5339 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
5125 5340 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
5126 5341 7.148540 CGTTCCGAATTACTTGTCTTGGATTTA 60.149 37.037 0.00 0.00 0.00 1.40
5127 5342 8.674607 GTTCCGAATTACTTGTCTTGGATTTAT 58.325 33.333 0.00 0.00 0.00 1.40
5128 5343 8.433421 TCCGAATTACTTGTCTTGGATTTATC 57.567 34.615 0.00 0.00 0.00 1.75
5129 5344 8.265055 TCCGAATTACTTGTCTTGGATTTATCT 58.735 33.333 0.00 0.00 0.00 1.98
5130 5345 9.542462 CCGAATTACTTGTCTTGGATTTATCTA 57.458 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.354751 AGTACCAATTACACAACCACAAAAT 57.645 32.000 0.00 0.00 32.41 1.82
34 35 7.381323 AGTACTAGTACCAATTACACAACCAC 58.619 38.462 25.97 1.24 36.75 4.16
36 37 7.758528 CAGAGTACTAGTACCAATTACACAACC 59.241 40.741 25.97 0.00 36.75 3.77
40 41 7.098074 AGCAGAGTACTAGTACCAATTACAC 57.902 40.000 25.97 10.32 36.75 2.90
43 44 6.484643 CCGTAGCAGAGTACTAGTACCAATTA 59.515 42.308 25.97 11.97 36.75 1.40
48 49 3.137533 CCCGTAGCAGAGTACTAGTACC 58.862 54.545 25.97 18.10 36.75 3.34
89 90 0.744414 CATACGGTGGAGTTGGCCTG 60.744 60.000 3.32 0.00 0.00 4.85
90 91 0.907704 TCATACGGTGGAGTTGGCCT 60.908 55.000 3.32 0.00 0.00 5.19
91 92 0.743345 GTCATACGGTGGAGTTGGCC 60.743 60.000 0.00 0.00 0.00 5.36
92 93 0.743345 GGTCATACGGTGGAGTTGGC 60.743 60.000 0.00 0.00 0.00 4.52
93 94 0.902531 AGGTCATACGGTGGAGTTGG 59.097 55.000 0.00 0.00 0.00 3.77
94 95 1.548719 TGAGGTCATACGGTGGAGTTG 59.451 52.381 0.00 0.00 0.00 3.16
95 96 1.933021 TGAGGTCATACGGTGGAGTT 58.067 50.000 0.00 0.00 0.00 3.01
96 97 1.933021 TTGAGGTCATACGGTGGAGT 58.067 50.000 0.00 0.00 0.00 3.85
97 98 2.618053 GTTTGAGGTCATACGGTGGAG 58.382 52.381 0.00 0.00 0.00 3.86
98 99 1.067425 CGTTTGAGGTCATACGGTGGA 60.067 52.381 13.24 0.00 43.91 4.02
99 100 1.355971 CGTTTGAGGTCATACGGTGG 58.644 55.000 13.24 0.00 43.91 4.61
103 104 1.265568 CGTCCGTTTGAGGTCATACG 58.734 55.000 13.90 13.90 46.02 3.06
104 105 2.358939 ACGTCCGTTTGAGGTCATAC 57.641 50.000 0.00 0.00 37.53 2.39
109 110 2.739132 GGGACGTCCGTTTGAGGT 59.261 61.111 27.68 0.00 44.44 3.85
110 111 2.047560 GGGGACGTCCGTTTGAGG 60.048 66.667 27.68 0.00 36.71 3.86
111 112 1.370064 AAGGGGACGTCCGTTTGAG 59.630 57.895 27.68 0.00 40.40 3.02
112 113 3.553467 AAGGGGACGTCCGTTTGA 58.447 55.556 27.68 0.00 40.40 2.69
115 116 1.070275 GACAAAGGGGACGTCCGTT 59.930 57.895 27.68 20.17 44.71 4.44
116 117 2.739132 GACAAAGGGGACGTCCGT 59.261 61.111 27.68 19.23 36.71 4.69
117 118 2.047560 GGACAAAGGGGACGTCCG 60.048 66.667 27.68 16.04 39.86 4.79
118 119 2.047560 CGGACAAAGGGGACGTCC 60.048 66.667 27.04 27.04 44.79 4.79
119 120 1.896122 ATCCGGACAAAGGGGACGTC 61.896 60.000 6.12 7.13 31.52 4.34
120 121 1.486145 AATCCGGACAAAGGGGACGT 61.486 55.000 6.12 0.00 31.52 4.34
121 122 0.322187 AAATCCGGACAAAGGGGACG 60.322 55.000 6.12 0.00 31.52 4.79
122 123 1.271707 TGAAATCCGGACAAAGGGGAC 60.272 52.381 6.12 0.00 31.52 4.46
123 124 1.068948 TGAAATCCGGACAAAGGGGA 58.931 50.000 6.12 0.00 0.00 4.81
124 125 2.024414 GATGAAATCCGGACAAAGGGG 58.976 52.381 6.12 0.00 37.38 4.79
136 137 3.938963 TGCTACCTCAAACGGATGAAATC 59.061 43.478 0.00 0.00 44.55 2.17
137 138 3.950397 TGCTACCTCAAACGGATGAAAT 58.050 40.909 0.00 0.00 0.00 2.17
138 139 3.410631 TGCTACCTCAAACGGATGAAA 57.589 42.857 0.00 0.00 0.00 2.69
139 140 3.410631 TTGCTACCTCAAACGGATGAA 57.589 42.857 0.00 0.00 0.00 2.57
140 141 3.270027 CATTGCTACCTCAAACGGATGA 58.730 45.455 0.00 0.00 0.00 2.92
141 142 2.355756 CCATTGCTACCTCAAACGGATG 59.644 50.000 0.00 0.00 0.00 3.51
142 143 2.643551 CCATTGCTACCTCAAACGGAT 58.356 47.619 0.00 0.00 0.00 4.18
143 144 1.339631 CCCATTGCTACCTCAAACGGA 60.340 52.381 0.00 0.00 0.00 4.69
144 145 1.094785 CCCATTGCTACCTCAAACGG 58.905 55.000 0.00 0.00 0.00 4.44
145 146 1.821216 ACCCATTGCTACCTCAAACG 58.179 50.000 0.00 0.00 0.00 3.60
146 147 2.683362 GCTACCCATTGCTACCTCAAAC 59.317 50.000 0.00 0.00 0.00 2.93
147 148 2.307392 TGCTACCCATTGCTACCTCAAA 59.693 45.455 0.00 0.00 0.00 2.69
148 149 1.912731 TGCTACCCATTGCTACCTCAA 59.087 47.619 0.00 0.00 0.00 3.02
149 150 1.578897 TGCTACCCATTGCTACCTCA 58.421 50.000 0.00 0.00 0.00 3.86
150 151 2.710096 TTGCTACCCATTGCTACCTC 57.290 50.000 0.00 0.00 0.00 3.85
151 152 3.089284 GTTTTGCTACCCATTGCTACCT 58.911 45.455 0.00 0.00 0.00 3.08
152 153 2.159435 CGTTTTGCTACCCATTGCTACC 60.159 50.000 0.00 0.00 0.00 3.18
153 154 2.159435 CCGTTTTGCTACCCATTGCTAC 60.159 50.000 0.00 0.00 0.00 3.58
154 155 2.088423 CCGTTTTGCTACCCATTGCTA 58.912 47.619 0.00 0.00 0.00 3.49
155 156 0.887933 CCGTTTTGCTACCCATTGCT 59.112 50.000 0.00 0.00 0.00 3.91
156 157 0.885196 TCCGTTTTGCTACCCATTGC 59.115 50.000 0.00 0.00 0.00 3.56
157 158 1.883275 TGTCCGTTTTGCTACCCATTG 59.117 47.619 0.00 0.00 0.00 2.82
158 159 2.279935 TGTCCGTTTTGCTACCCATT 57.720 45.000 0.00 0.00 0.00 3.16
159 160 2.091541 CATGTCCGTTTTGCTACCCAT 58.908 47.619 0.00 0.00 0.00 4.00
160 161 1.529226 CATGTCCGTTTTGCTACCCA 58.471 50.000 0.00 0.00 0.00 4.51
161 162 0.170339 GCATGTCCGTTTTGCTACCC 59.830 55.000 0.00 0.00 33.61 3.69
162 163 0.179200 CGCATGTCCGTTTTGCTACC 60.179 55.000 0.00 0.00 34.23 3.18
163 164 0.515564 ACGCATGTCCGTTTTGCTAC 59.484 50.000 0.00 0.00 38.47 3.58
164 165 0.515127 CACGCATGTCCGTTTTGCTA 59.485 50.000 0.00 0.00 39.83 3.49
165 166 1.282570 CACGCATGTCCGTTTTGCT 59.717 52.632 0.00 0.00 39.83 3.91
166 167 1.008995 ACACGCATGTCCGTTTTGC 60.009 52.632 0.00 0.00 39.83 3.68
175 176 3.315142 ATGAGCCGGACACGCATGT 62.315 57.895 5.05 0.00 43.71 3.21
176 177 2.512286 ATGAGCCGGACACGCATG 60.512 61.111 5.05 0.00 39.22 4.06
177 178 2.512286 CATGAGCCGGACACGCAT 60.512 61.111 5.05 0.00 39.22 4.73
178 179 3.529341 AACATGAGCCGGACACGCA 62.529 57.895 5.05 0.00 39.22 5.24
179 180 2.742372 AACATGAGCCGGACACGC 60.742 61.111 5.05 0.00 39.22 5.34
180 181 2.390599 CCAACATGAGCCGGACACG 61.391 63.158 5.05 0.00 40.55 4.49
181 182 1.003839 TCCAACATGAGCCGGACAC 60.004 57.895 5.05 0.00 0.00 3.67
182 183 1.296392 CTCCAACATGAGCCGGACA 59.704 57.895 5.05 4.62 0.00 4.02
183 184 1.450312 CCTCCAACATGAGCCGGAC 60.450 63.158 5.05 0.00 0.00 4.79
184 185 2.989639 CCTCCAACATGAGCCGGA 59.010 61.111 5.05 0.00 0.00 5.14
185 186 2.825836 GCCTCCAACATGAGCCGG 60.826 66.667 0.00 0.00 0.00 6.13
186 187 2.046023 TGCCTCCAACATGAGCCG 60.046 61.111 0.00 0.00 0.00 5.52
187 188 2.048603 GGTGCCTCCAACATGAGCC 61.049 63.158 0.00 0.00 35.97 4.70
188 189 2.048603 GGGTGCCTCCAACATGAGC 61.049 63.158 0.00 0.00 38.11 4.26
189 190 0.679002 CTGGGTGCCTCCAACATGAG 60.679 60.000 0.00 0.00 36.21 2.90
190 191 1.379916 CTGGGTGCCTCCAACATGA 59.620 57.895 0.00 0.00 36.21 3.07
191 192 1.075482 ACTGGGTGCCTCCAACATG 59.925 57.895 0.00 0.00 36.21 3.21
192 193 1.075482 CACTGGGTGCCTCCAACAT 59.925 57.895 0.00 0.00 36.21 2.71
193 194 2.515398 CACTGGGTGCCTCCAACA 59.485 61.111 0.00 0.00 36.21 3.33
207 208 1.127567 TTGGGGTAGTCAGCTGCACT 61.128 55.000 9.47 15.40 31.07 4.40
208 209 0.250727 TTTGGGGTAGTCAGCTGCAC 60.251 55.000 9.47 8.49 0.00 4.57
209 210 0.476338 TTTTGGGGTAGTCAGCTGCA 59.524 50.000 9.47 0.00 0.00 4.41
210 211 1.839424 ATTTTGGGGTAGTCAGCTGC 58.161 50.000 9.47 4.26 0.00 5.25
211 212 4.818546 CAGATATTTTGGGGTAGTCAGCTG 59.181 45.833 7.63 7.63 0.00 4.24
212 213 4.687219 GCAGATATTTTGGGGTAGTCAGCT 60.687 45.833 0.00 0.00 0.00 4.24
213 214 3.565902 GCAGATATTTTGGGGTAGTCAGC 59.434 47.826 0.00 0.00 0.00 4.26
214 215 4.137543 GGCAGATATTTTGGGGTAGTCAG 58.862 47.826 0.00 0.00 0.00 3.51
215 216 3.785887 AGGCAGATATTTTGGGGTAGTCA 59.214 43.478 0.00 0.00 0.00 3.41
216 217 4.137543 CAGGCAGATATTTTGGGGTAGTC 58.862 47.826 0.00 0.00 0.00 2.59
217 218 3.688414 GCAGGCAGATATTTTGGGGTAGT 60.688 47.826 0.00 0.00 0.00 2.73
218 219 2.887152 GCAGGCAGATATTTTGGGGTAG 59.113 50.000 0.00 0.00 0.00 3.18
219 220 2.243478 TGCAGGCAGATATTTTGGGGTA 59.757 45.455 0.00 0.00 0.00 3.69
220 221 1.006998 TGCAGGCAGATATTTTGGGGT 59.993 47.619 0.00 0.00 0.00 4.95
221 222 1.779221 TGCAGGCAGATATTTTGGGG 58.221 50.000 0.00 0.00 0.00 4.96
222 223 4.411256 AAATGCAGGCAGATATTTTGGG 57.589 40.909 0.00 0.00 0.00 4.12
223 224 5.728351 CAAAATGCAGGCAGATATTTTGG 57.272 39.130 16.98 1.64 42.45 3.28
224 225 5.728351 CCAAAATGCAGGCAGATATTTTG 57.272 39.130 17.48 17.48 44.23 2.44
235 236 2.262292 CGTGGGCCAAAATGCAGG 59.738 61.111 8.40 0.00 0.00 4.85
236 237 1.080569 GACGTGGGCCAAAATGCAG 60.081 57.895 8.40 0.00 0.00 4.41
237 238 1.530419 AGACGTGGGCCAAAATGCA 60.530 52.632 8.40 0.00 0.00 3.96
238 239 1.080569 CAGACGTGGGCCAAAATGC 60.081 57.895 8.40 0.00 0.00 3.56
239 240 1.080569 GCAGACGTGGGCCAAAATG 60.081 57.895 8.40 6.34 0.00 2.32
240 241 2.625823 CGCAGACGTGGGCCAAAAT 61.626 57.895 8.40 0.00 33.53 1.82
241 242 3.283684 CGCAGACGTGGGCCAAAA 61.284 61.111 8.40 0.00 33.53 2.44
257 258 4.776322 TTGTGGGCGGATGAGGCG 62.776 66.667 0.00 0.00 37.59 5.52
258 259 2.825836 CTTGTGGGCGGATGAGGC 60.826 66.667 0.00 0.00 0.00 4.70
259 260 2.825836 GCTTGTGGGCGGATGAGG 60.826 66.667 0.00 0.00 0.00 3.86
260 261 1.817099 GAGCTTGTGGGCGGATGAG 60.817 63.158 0.00 0.00 37.29 2.90
261 262 2.268920 GAGCTTGTGGGCGGATGA 59.731 61.111 0.00 0.00 37.29 2.92
262 263 3.197790 CGAGCTTGTGGGCGGATG 61.198 66.667 0.00 0.00 37.29 3.51
307 308 4.814294 CTACACCCCGGCGAGCAC 62.814 72.222 9.30 0.00 0.00 4.40
310 311 4.514577 CTGCTACACCCCGGCGAG 62.515 72.222 9.30 0.92 0.00 5.03
313 314 4.715523 TTGCTGCTACACCCCGGC 62.716 66.667 0.00 0.00 0.00 6.13
314 315 2.746277 GTTGCTGCTACACCCCGG 60.746 66.667 9.31 0.00 0.00 5.73
315 316 2.031919 TGTTGCTGCTACACCCCG 59.968 61.111 12.74 0.00 0.00 5.73
316 317 3.668386 GTGTTGCTGCTACACCCC 58.332 61.111 28.78 10.90 39.93 4.95
319 320 1.291877 CTCGGGTGTTGCTGCTACAC 61.292 60.000 30.29 30.29 43.96 2.90
320 321 1.005037 CTCGGGTGTTGCTGCTACA 60.005 57.895 12.74 12.74 0.00 2.74
321 322 2.391389 GCTCGGGTGTTGCTGCTAC 61.391 63.158 7.29 7.29 0.00 3.58
322 323 2.047274 GCTCGGGTGTTGCTGCTA 60.047 61.111 0.00 0.00 0.00 3.49
323 324 3.890936 GAGCTCGGGTGTTGCTGCT 62.891 63.158 0.00 0.00 37.16 4.24
324 325 3.426568 GAGCTCGGGTGTTGCTGC 61.427 66.667 0.00 0.00 37.16 5.25
325 326 3.114616 CGAGCTCGGGTGTTGCTG 61.115 66.667 28.40 0.00 37.16 4.41
353 354 4.446413 GTCGGGTGGGCAGGTACG 62.446 72.222 0.00 0.00 0.00 3.67
354 355 3.001406 AGTCGGGTGGGCAGGTAC 61.001 66.667 0.00 0.00 0.00 3.34
355 356 3.000819 CAGTCGGGTGGGCAGGTA 61.001 66.667 0.00 0.00 0.00 3.08
383 384 3.939837 ATCTGTGTGGCGAGCGTGG 62.940 63.158 0.00 0.00 0.00 4.94
384 385 2.433145 ATCTGTGTGGCGAGCGTG 60.433 61.111 0.00 0.00 0.00 5.34
385 386 2.433145 CATCTGTGTGGCGAGCGT 60.433 61.111 0.00 0.00 0.00 5.07
386 387 2.433145 ACATCTGTGTGGCGAGCG 60.433 61.111 0.00 0.00 37.14 5.03
387 388 3.479370 GACATCTGTGTGGCGAGC 58.521 61.111 0.00 0.00 39.09 5.03
392 393 1.375140 AGCTGCGACATCTGTGTGG 60.375 57.895 0.00 0.00 39.09 4.17
393 394 1.785951 CAGCTGCGACATCTGTGTG 59.214 57.895 0.00 0.00 39.09 3.82
394 395 2.031516 GCAGCTGCGACATCTGTGT 61.032 57.895 25.23 0.00 42.49 3.72
395 396 2.783275 GCAGCTGCGACATCTGTG 59.217 61.111 25.23 0.00 31.24 3.66
515 516 2.502510 CATGTGCCGCAACTTCGC 60.503 61.111 0.00 0.00 0.00 4.70
516 517 2.502510 GCATGTGCCGCAACTTCG 60.503 61.111 0.00 0.00 34.31 3.79
517 518 1.443194 CTGCATGTGCCGCAACTTC 60.443 57.895 0.00 0.00 39.30 3.01
518 519 2.646719 CTGCATGTGCCGCAACTT 59.353 55.556 0.00 0.00 39.30 2.66
525 526 4.471726 GTCGCTGCTGCATGTGCC 62.472 66.667 16.29 0.00 41.18 5.01
526 527 4.806481 CGTCGCTGCTGCATGTGC 62.806 66.667 16.29 2.06 39.64 4.57
527 528 4.156622 CCGTCGCTGCTGCATGTG 62.157 66.667 16.29 4.59 39.64 3.21
551 552 1.592939 GCAGACCCGCTTAGCTAGC 60.593 63.158 6.62 6.62 46.83 3.42
552 553 1.068250 GGCAGACCCGCTTAGCTAG 59.932 63.158 1.76 0.00 0.00 3.42
553 554 3.217231 GGCAGACCCGCTTAGCTA 58.783 61.111 1.76 0.00 0.00 3.32
562 563 2.183555 CGACCTAACGGCAGACCC 59.816 66.667 0.00 0.00 0.00 4.46
563 564 1.153881 GACGACCTAACGGCAGACC 60.154 63.158 0.00 0.00 41.34 3.85
564 565 0.456312 CAGACGACCTAACGGCAGAC 60.456 60.000 0.00 0.00 44.44 3.51
565 566 1.592400 CCAGACGACCTAACGGCAGA 61.592 60.000 0.00 0.00 44.44 4.26
566 567 1.153823 CCAGACGACCTAACGGCAG 60.154 63.158 0.00 0.00 44.44 4.85
567 568 0.608856 TACCAGACGACCTAACGGCA 60.609 55.000 0.00 0.00 44.44 5.69
568 569 0.743097 ATACCAGACGACCTAACGGC 59.257 55.000 0.00 0.00 42.10 5.68
569 570 1.747355 ACATACCAGACGACCTAACGG 59.253 52.381 0.00 0.00 37.61 4.44
570 571 2.223433 GGACATACCAGACGACCTAACG 60.223 54.545 0.00 0.00 38.79 3.18
571 572 2.223433 CGGACATACCAGACGACCTAAC 60.223 54.545 0.00 0.00 38.90 2.34
572 573 2.019249 CGGACATACCAGACGACCTAA 58.981 52.381 0.00 0.00 38.90 2.69
573 574 1.065199 ACGGACATACCAGACGACCTA 60.065 52.381 0.00 0.00 38.90 3.08
574 575 0.323178 ACGGACATACCAGACGACCT 60.323 55.000 0.00 0.00 38.90 3.85
575 576 0.529378 AACGGACATACCAGACGACC 59.471 55.000 0.00 0.00 38.90 4.79
576 577 2.358939 AAACGGACATACCAGACGAC 57.641 50.000 0.00 0.00 38.90 4.34
577 578 4.400251 AGATAAAACGGACATACCAGACGA 59.600 41.667 0.00 0.00 38.90 4.20
578 579 4.679662 AGATAAAACGGACATACCAGACG 58.320 43.478 0.00 0.00 38.90 4.18
579 580 6.103997 TCAAGATAAAACGGACATACCAGAC 58.896 40.000 0.00 0.00 38.90 3.51
580 581 6.288941 TCAAGATAAAACGGACATACCAGA 57.711 37.500 0.00 0.00 38.90 3.86
581 582 6.455113 CGTTCAAGATAAAACGGACATACCAG 60.455 42.308 0.00 0.00 43.31 4.00
582 583 5.349270 CGTTCAAGATAAAACGGACATACCA 59.651 40.000 0.00 0.00 43.31 3.25
583 584 5.792631 CGTTCAAGATAAAACGGACATACC 58.207 41.667 0.00 0.00 43.31 2.73
591 592 2.156117 TGCGTCCGTTCAAGATAAAACG 59.844 45.455 0.93 0.93 45.83 3.60
592 593 3.799137 TGCGTCCGTTCAAGATAAAAC 57.201 42.857 0.00 0.00 0.00 2.43
593 594 3.372822 GGATGCGTCCGTTCAAGATAAAA 59.627 43.478 9.75 0.00 34.13 1.52
594 595 2.933906 GGATGCGTCCGTTCAAGATAAA 59.066 45.455 9.75 0.00 34.13 1.40
595 596 2.546778 GGATGCGTCCGTTCAAGATAA 58.453 47.619 9.75 0.00 34.13 1.75
596 597 2.218953 GGATGCGTCCGTTCAAGATA 57.781 50.000 9.75 0.00 34.13 1.98
597 598 3.065575 GGATGCGTCCGTTCAAGAT 57.934 52.632 9.75 0.00 34.13 2.40
598 599 4.590487 GGATGCGTCCGTTCAAGA 57.410 55.556 9.75 0.00 34.13 3.02
606 607 1.535462 CCATTTTATCCGGATGCGTCC 59.465 52.381 27.55 15.54 41.40 4.79
607 608 1.535462 CCCATTTTATCCGGATGCGTC 59.465 52.381 27.55 0.00 0.00 5.19
608 609 1.604604 CCCATTTTATCCGGATGCGT 58.395 50.000 27.55 3.44 0.00 5.24
609 610 0.881118 CCCCATTTTATCCGGATGCG 59.119 55.000 27.55 9.93 0.00 4.73
610 611 1.886542 GACCCCATTTTATCCGGATGC 59.113 52.381 27.55 0.61 0.00 3.91
611 612 2.151202 CGACCCCATTTTATCCGGATG 58.849 52.381 27.55 11.28 0.00 3.51
612 613 1.544759 GCGACCCCATTTTATCCGGAT 60.545 52.381 22.95 22.95 0.00 4.18
613 614 0.179040 GCGACCCCATTTTATCCGGA 60.179 55.000 6.61 6.61 0.00 5.14
614 615 1.503818 CGCGACCCCATTTTATCCGG 61.504 60.000 0.00 0.00 0.00 5.14
615 616 1.938861 CGCGACCCCATTTTATCCG 59.061 57.895 0.00 0.00 0.00 4.18
616 617 1.652563 GCGCGACCCCATTTTATCC 59.347 57.895 12.10 0.00 0.00 2.59
617 618 1.278637 CGCGCGACCCCATTTTATC 59.721 57.895 28.94 0.00 0.00 1.75
618 619 2.184167 CCGCGCGACCCCATTTTAT 61.184 57.895 34.63 0.00 0.00 1.40
619 620 2.820479 CCGCGCGACCCCATTTTA 60.820 61.111 34.63 0.00 0.00 1.52
633 634 4.329545 TGAGGCCAACTCCACCGC 62.330 66.667 5.01 0.00 46.01 5.68
634 635 2.358737 GTGAGGCCAACTCCACCG 60.359 66.667 5.01 0.00 46.01 4.94
635 636 1.003233 GAGTGAGGCCAACTCCACC 60.003 63.158 22.15 3.91 46.01 4.61
636 637 1.003233 GGAGTGAGGCCAACTCCAC 60.003 63.158 35.72 21.74 46.82 4.02
637 638 3.483587 GGAGTGAGGCCAACTCCA 58.516 61.111 35.72 13.38 46.82 3.86
638 639 2.266055 CGGAGTGAGGCCAACTCC 59.734 66.667 33.09 33.09 46.01 3.85
639 640 2.113243 AACCGGAGTGAGGCCAACTC 62.113 60.000 23.80 23.80 46.78 3.01
640 641 1.705997 AAACCGGAGTGAGGCCAACT 61.706 55.000 9.46 8.42 0.00 3.16
641 642 1.228154 AAACCGGAGTGAGGCCAAC 60.228 57.895 9.46 2.27 0.00 3.77
642 643 1.228124 CAAACCGGAGTGAGGCCAA 60.228 57.895 9.46 0.00 0.00 4.52
643 644 2.429930 CAAACCGGAGTGAGGCCA 59.570 61.111 9.46 0.00 0.00 5.36
644 645 2.359975 CCAAACCGGAGTGAGGCC 60.360 66.667 9.46 0.00 36.56 5.19
645 646 3.056328 GCCAAACCGGAGTGAGGC 61.056 66.667 9.46 10.55 38.92 4.70
646 647 1.672356 CTGCCAAACCGGAGTGAGG 60.672 63.158 9.46 3.38 36.56 3.86
647 648 0.671781 CTCTGCCAAACCGGAGTGAG 60.672 60.000 9.46 1.72 36.56 3.51
653 654 0.250727 TTCTTCCTCTGCCAAACCGG 60.251 55.000 0.00 0.00 38.11 5.28
659 660 2.119495 GGGTATCTTCTTCCTCTGCCA 58.881 52.381 0.00 0.00 0.00 4.92
679 680 2.775911 TTCTGTGCCATCTTCTCCAG 57.224 50.000 0.00 0.00 0.00 3.86
697 698 1.275657 CTGCAGCGTCGTCGTTTTT 59.724 52.632 0.00 0.00 39.49 1.94
919 940 5.344884 CCTGCTCTGCTTACTTACTTACTC 58.655 45.833 0.00 0.00 0.00 2.59
928 949 2.291930 ACTACTCCCTGCTCTGCTTACT 60.292 50.000 0.00 0.00 0.00 2.24
929 950 2.104170 ACTACTCCCTGCTCTGCTTAC 58.896 52.381 0.00 0.00 0.00 2.34
930 951 2.534042 ACTACTCCCTGCTCTGCTTA 57.466 50.000 0.00 0.00 0.00 3.09
931 952 2.534042 TACTACTCCCTGCTCTGCTT 57.466 50.000 0.00 0.00 0.00 3.91
932 953 2.765689 ATACTACTCCCTGCTCTGCT 57.234 50.000 0.00 0.00 0.00 4.24
933 954 5.392165 CGTAATATACTACTCCCTGCTCTGC 60.392 48.000 0.00 0.00 0.00 4.26
934 955 5.392165 GCGTAATATACTACTCCCTGCTCTG 60.392 48.000 0.00 0.00 0.00 3.35
935 956 4.701171 GCGTAATATACTACTCCCTGCTCT 59.299 45.833 0.00 0.00 0.00 4.09
1912 1975 0.800683 CAGAAATGAGCGACGCCGTA 60.801 55.000 17.79 3.20 38.24 4.02
1913 1976 2.094659 CAGAAATGAGCGACGCCGT 61.095 57.895 17.79 6.72 38.24 5.68
1916 1979 0.095417 GGAACAGAAATGAGCGACGC 59.905 55.000 13.03 13.03 0.00 5.19
1918 1981 1.129437 GCAGGAACAGAAATGAGCGAC 59.871 52.381 0.00 0.00 0.00 5.19
1925 2002 2.787473 TCCGATGCAGGAACAGAAAT 57.213 45.000 0.00 0.00 37.36 2.17
1932 2009 1.146041 CCCGAATCCGATGCAGGAA 59.854 57.895 0.00 0.00 44.50 3.36
2005 2082 1.568025 GCTGTGGGTTCGTTCGTTC 59.432 57.895 0.00 0.00 0.00 3.95
2163 2240 1.043673 AAGGACACGGGCTAGGCTAG 61.044 60.000 17.33 17.33 0.00 3.42
2165 2242 1.489560 AAAAGGACACGGGCTAGGCT 61.490 55.000 16.80 0.00 0.00 4.58
2199 2276 5.122711 GCTAGCTAGTGGTAGTAGTAGATGC 59.877 48.000 21.62 0.00 43.86 3.91
2201 2278 6.469410 CAGCTAGCTAGTGGTAGTAGTAGAT 58.531 44.000 18.86 0.00 43.86 1.98
2202 2279 5.742546 GCAGCTAGCTAGTGGTAGTAGTAGA 60.743 48.000 18.86 0.00 43.86 2.59
2203 2280 4.453136 GCAGCTAGCTAGTGGTAGTAGTAG 59.547 50.000 18.86 0.38 43.86 2.57
2204 2281 4.387598 GCAGCTAGCTAGTGGTAGTAGTA 58.612 47.826 18.86 0.00 43.86 1.82
2205 2282 3.215975 GCAGCTAGCTAGTGGTAGTAGT 58.784 50.000 18.86 0.00 43.86 2.73
2234 2311 2.927477 ACAACTACCATACGTTCATGCG 59.073 45.455 0.00 0.00 37.94 4.73
2314 2433 4.695928 AGATTGTTTAGGCTTCTTTCGACC 59.304 41.667 0.00 0.00 0.00 4.79
2316 2435 4.935808 GGAGATTGTTTAGGCTTCTTTCGA 59.064 41.667 0.00 0.00 0.00 3.71
2318 2437 6.405176 CCATGGAGATTGTTTAGGCTTCTTTC 60.405 42.308 5.56 0.00 0.00 2.62
2319 2438 5.420104 CCATGGAGATTGTTTAGGCTTCTTT 59.580 40.000 5.56 0.00 0.00 2.52
2320 2439 4.952335 CCATGGAGATTGTTTAGGCTTCTT 59.048 41.667 5.56 0.00 0.00 2.52
2321 2440 4.228210 TCCATGGAGATTGTTTAGGCTTCT 59.772 41.667 11.44 0.00 0.00 2.85
2322 2441 4.526970 TCCATGGAGATTGTTTAGGCTTC 58.473 43.478 11.44 0.00 0.00 3.86
2323 2442 4.591321 TCCATGGAGATTGTTTAGGCTT 57.409 40.909 11.44 0.00 0.00 4.35
2324 2443 4.591321 TTCCATGGAGATTGTTTAGGCT 57.409 40.909 15.53 0.00 0.00 4.58
2325 2444 5.859205 ATTTCCATGGAGATTGTTTAGGC 57.141 39.130 15.53 0.00 0.00 3.93
2327 2446 7.340232 TCAGGAATTTCCATGGAGATTGTTTAG 59.660 37.037 29.82 16.54 39.61 1.85
2355 2488 8.691661 AAGAAGCTTTAAGGTTATGTCTGAAA 57.308 30.769 9.49 0.00 35.86 2.69
2402 2538 6.535508 AGCTTCCACGAGAGAAATAACAATAC 59.464 38.462 0.00 0.00 0.00 1.89
2410 2546 3.971245 AGAAGCTTCCACGAGAGAAAT 57.029 42.857 22.81 0.00 0.00 2.17
2412 2548 2.365617 ACAAGAAGCTTCCACGAGAGAA 59.634 45.455 22.81 0.00 0.00 2.87
2413 2549 1.964223 ACAAGAAGCTTCCACGAGAGA 59.036 47.619 22.81 0.00 0.00 3.10
2415 2551 2.483876 CAACAAGAAGCTTCCACGAGA 58.516 47.619 22.81 0.00 0.00 4.04
2416 2552 1.069636 GCAACAAGAAGCTTCCACGAG 60.070 52.381 22.81 11.52 0.00 4.18
2417 2553 0.944386 GCAACAAGAAGCTTCCACGA 59.056 50.000 22.81 0.00 0.00 4.35
2418 2554 0.947244 AGCAACAAGAAGCTTCCACG 59.053 50.000 22.81 13.55 38.01 4.94
2481 2617 1.353103 CGGTGCCTACTACGTACCG 59.647 63.158 9.19 9.19 46.66 4.02
2521 2657 1.096386 CGTGGGTTTCGGGTTGACAA 61.096 55.000 0.00 0.00 0.00 3.18
2522 2658 1.524165 CGTGGGTTTCGGGTTGACA 60.524 57.895 0.00 0.00 0.00 3.58
2541 2677 1.068753 CATCTAGCTGCCTGTCGGG 59.931 63.158 0.00 0.00 38.36 5.14
2622 2759 7.771826 TCCATGGCTTGGTACTAAACTAATAAC 59.228 37.037 17.94 0.00 46.52 1.89
2674 2822 3.952675 GTGCGTGTGTGGTGCCAG 61.953 66.667 0.00 0.00 0.00 4.85
2696 2844 4.771577 TGAATGCAGAGAGAGAGAAAGAGT 59.228 41.667 0.00 0.00 0.00 3.24
2711 2859 0.806868 ATTGTGGACGCTGAATGCAG 59.193 50.000 0.00 0.00 45.13 4.41
2717 2865 0.321564 CCTTGGATTGTGGACGCTGA 60.322 55.000 0.00 0.00 0.00 4.26
2751 2899 1.000896 AAAAGCATGGACCCTCGGG 60.001 57.895 0.00 0.00 42.03 5.14
2770 2918 5.175127 GGAAAGCTACCAAAGAGAAGAGAG 58.825 45.833 5.17 0.00 0.00 3.20
2813 2962 1.067354 ACCGTCGTTCTAACCATGGAC 60.067 52.381 21.47 4.36 31.58 4.02
2826 3003 4.060038 CGGCACCCTAACCGTCGT 62.060 66.667 0.00 0.00 44.46 4.34
2922 3108 4.699522 GTGGGTGGCTGTCCGTCC 62.700 72.222 0.00 0.00 34.14 4.79
2936 3122 3.136123 CTCCTTGCATGGCCGTGG 61.136 66.667 26.22 9.94 0.00 4.94
2952 3138 1.165270 GCAATAACTTGTCGTGGCCT 58.835 50.000 3.32 0.00 34.69 5.19
2953 3139 0.878416 TGCAATAACTTGTCGTGGCC 59.122 50.000 0.00 0.00 34.69 5.36
2966 3152 5.120830 ACAAAAACAAAAACGCAGTGCAATA 59.879 32.000 16.83 0.00 45.00 1.90
2998 3184 1.996898 GCGATATCACACGGACACAAA 59.003 47.619 3.12 0.00 0.00 2.83
3039 3225 8.459911 TCGGCTCTCGATCCATTATTATTATA 57.540 34.615 0.00 0.00 43.74 0.98
3040 3226 7.348080 TCGGCTCTCGATCCATTATTATTAT 57.652 36.000 0.00 0.00 43.74 1.28
3058 3251 1.003866 GGAATTATGCACGTTCGGCTC 60.004 52.381 0.00 0.00 0.00 4.70
3097 3291 2.203126 GGGGCTCCATCAAGCTCG 60.203 66.667 0.00 0.00 44.11 5.03
3100 3294 1.452833 GACAGGGGCTCCATCAAGC 60.453 63.158 4.79 0.00 41.73 4.01
3104 3298 2.592308 GGTGACAGGGGCTCCATC 59.408 66.667 4.79 1.83 34.83 3.51
3107 3301 2.692273 AAAACGGTGACAGGGGCTCC 62.692 60.000 0.00 0.00 0.00 4.70
3128 3322 2.026729 TCCCGACAACCATTCAGCATTA 60.027 45.455 0.00 0.00 0.00 1.90
3134 3328 1.003118 CTCCTTCCCGACAACCATTCA 59.997 52.381 0.00 0.00 0.00 2.57
3140 3334 1.608283 CCACTTCTCCTTCCCGACAAC 60.608 57.143 0.00 0.00 0.00 3.32
3147 3341 5.301805 TCAATTTTTCACCACTTCTCCTTCC 59.698 40.000 0.00 0.00 0.00 3.46
3149 3343 6.607198 TCTTCAATTTTTCACCACTTCTCCTT 59.393 34.615 0.00 0.00 0.00 3.36
3156 3350 4.956075 ACACCTCTTCAATTTTTCACCACT 59.044 37.500 0.00 0.00 0.00 4.00
3188 3382 2.320587 CCTCAGCACGTTCCTGCAC 61.321 63.158 7.87 0.00 39.86 4.57
3427 3621 2.671396 CCTCGTAATGTCCAAGGTTTCG 59.329 50.000 0.00 0.00 0.00 3.46
3444 3638 5.297776 ACCAAAGATCATTAGAATTGCCTCG 59.702 40.000 0.00 0.00 0.00 4.63
3456 3650 5.049267 GCAAAATGCAACACCAAAGATCATT 60.049 36.000 0.00 0.00 44.26 2.57
3548 3742 0.539986 AATCCTTGGCGTCCACGTAT 59.460 50.000 0.36 0.00 42.22 3.06
3611 3805 2.622436 GCATGTCAGTCAGTCTTACCC 58.378 52.381 0.00 0.00 0.00 3.69
3642 3836 4.215399 GCAGACATTGTTAACAGTGCCTTA 59.785 41.667 25.83 3.85 37.12 2.69
3643 3837 3.004734 GCAGACATTGTTAACAGTGCCTT 59.995 43.478 25.83 10.90 37.12 4.35
3645 3839 2.554032 AGCAGACATTGTTAACAGTGCC 59.446 45.455 25.83 17.92 37.12 5.01
3646 3840 3.003689 ACAGCAGACATTGTTAACAGTGC 59.996 43.478 25.83 20.07 37.12 4.40
3648 3842 4.199310 ACACAGCAGACATTGTTAACAGT 58.801 39.130 8.56 2.66 0.00 3.55
3649 3843 4.818534 ACACAGCAGACATTGTTAACAG 57.181 40.909 8.56 0.68 0.00 3.16
3651 3845 6.202954 AGAGTAACACAGCAGACATTGTTAAC 59.797 38.462 0.00 0.00 36.46 2.01
3653 3847 5.696270 CAGAGTAACACAGCAGACATTGTTA 59.304 40.000 0.00 0.00 34.15 2.41
3675 3869 6.929049 TCAGTTCAGTGTAATTTCAGTACCAG 59.071 38.462 0.00 0.00 0.00 4.00
3702 3901 1.533033 TCCCTTGCACGTCTGGAGA 60.533 57.895 0.00 0.00 0.00 3.71
3704 3903 2.741092 GTCCCTTGCACGTCTGGA 59.259 61.111 0.00 0.00 0.00 3.86
3764 3963 1.622312 ACGAACTTGTAGGGGGAGTTC 59.378 52.381 5.61 5.61 43.52 3.01
3766 3965 0.974383 CACGAACTTGTAGGGGGAGT 59.026 55.000 0.00 0.00 0.00 3.85
3791 3990 0.037303 AGGAGACGACCGTGTAGGAA 59.963 55.000 0.00 0.00 45.00 3.36
3839 4038 2.427325 CTATCGCGACGTCGACCCTC 62.427 65.000 39.74 20.94 41.62 4.30
3970 4169 6.109359 ACTCCAGCAAATAACACAGAGTATC 58.891 40.000 0.00 0.00 31.84 2.24
3971 4170 6.054860 ACTCCAGCAAATAACACAGAGTAT 57.945 37.500 0.00 0.00 31.84 2.12
3973 4172 4.319177 GACTCCAGCAAATAACACAGAGT 58.681 43.478 0.00 0.00 36.11 3.24
3975 4174 3.327757 AGGACTCCAGCAAATAACACAGA 59.672 43.478 0.00 0.00 0.00 3.41
3976 4175 3.679389 AGGACTCCAGCAAATAACACAG 58.321 45.455 0.00 0.00 0.00 3.66
3977 4176 3.788227 AGGACTCCAGCAAATAACACA 57.212 42.857 0.00 0.00 0.00 3.72
3978 4177 4.327680 AGAAGGACTCCAGCAAATAACAC 58.672 43.478 0.00 0.00 0.00 3.32
3980 4179 4.837972 AGAGAAGGACTCCAGCAAATAAC 58.162 43.478 0.00 0.00 45.96 1.89
3981 4180 5.721960 ACTAGAGAAGGACTCCAGCAAATAA 59.278 40.000 0.00 0.00 45.96 1.40
3982 4181 5.273208 ACTAGAGAAGGACTCCAGCAAATA 58.727 41.667 0.00 0.00 45.96 1.40
3983 4182 4.100373 ACTAGAGAAGGACTCCAGCAAAT 58.900 43.478 0.00 0.00 45.96 2.32
3984 4183 3.511477 ACTAGAGAAGGACTCCAGCAAA 58.489 45.455 0.00 0.00 45.96 3.68
4054 4254 4.297510 TGAATTGAAAGCAACCAACATCG 58.702 39.130 0.00 0.00 36.72 3.84
4116 4316 8.552034 GGTTACTTATACATCACATTCTTCAGC 58.448 37.037 0.00 0.00 0.00 4.26
4252 4456 6.686630 TGTAAATTGTAATTCAGGCAACAGG 58.313 36.000 0.00 0.00 41.41 4.00
4262 4466 9.191995 CCACTTCTGGTTTGTAAATTGTAATTC 57.808 33.333 0.00 0.00 32.03 2.17
4342 4546 4.833478 TTTGCTCTAGATTCTTCAGGCT 57.167 40.909 0.00 0.00 0.00 4.58
4381 4586 5.177696 GCAAAGACTGTAGTACTGAAGTTGG 59.822 44.000 13.54 3.52 0.00 3.77
4384 4589 5.793030 AGCAAAGACTGTAGTACTGAAGT 57.207 39.130 13.54 8.80 0.00 3.01
4406 4611 4.026744 TGTTCCCTCAAAACAATGGTGAA 58.973 39.130 0.00 0.00 33.86 3.18
4408 4613 3.384467 ACTGTTCCCTCAAAACAATGGTG 59.616 43.478 0.00 0.00 36.27 4.17
4409 4614 3.642141 ACTGTTCCCTCAAAACAATGGT 58.358 40.909 0.00 0.00 36.27 3.55
4411 4616 5.519722 GTGTACTGTTCCCTCAAAACAATG 58.480 41.667 0.00 0.00 36.27 2.82
4412 4617 4.274950 CGTGTACTGTTCCCTCAAAACAAT 59.725 41.667 0.00 0.00 36.27 2.71
4418 4625 1.001048 CGTCGTGTACTGTTCCCTCAA 60.001 52.381 0.00 0.00 0.00 3.02
4453 4660 7.996385 ACATTTTTATATTTTGGGACGGAGAG 58.004 34.615 0.00 0.00 0.00 3.20
4454 4661 7.948034 ACATTTTTATATTTTGGGACGGAGA 57.052 32.000 0.00 0.00 0.00 3.71
4455 4662 8.996024 AAACATTTTTATATTTTGGGACGGAG 57.004 30.769 0.00 0.00 0.00 4.63
4508 4715 9.117183 ACTCCCTCCGTTTCATAATATAAAAAC 57.883 33.333 0.00 0.00 0.00 2.43
4512 4719 9.316594 TGATACTCCCTCCGTTTCATAATATAA 57.683 33.333 0.00 0.00 0.00 0.98
4513 4720 8.888836 TGATACTCCCTCCGTTTCATAATATA 57.111 34.615 0.00 0.00 0.00 0.86
4514 4721 7.792364 TGATACTCCCTCCGTTTCATAATAT 57.208 36.000 0.00 0.00 0.00 1.28
4515 4722 7.362660 CGATGATACTCCCTCCGTTTCATAATA 60.363 40.741 0.00 0.00 34.62 0.98
4516 4723 6.572509 CGATGATACTCCCTCCGTTTCATAAT 60.573 42.308 0.00 0.00 34.62 1.28
4517 4724 5.278808 CGATGATACTCCCTCCGTTTCATAA 60.279 44.000 0.00 0.00 34.62 1.90
4518 4725 4.217767 CGATGATACTCCCTCCGTTTCATA 59.782 45.833 0.00 0.00 34.62 2.15
4519 4726 3.005897 CGATGATACTCCCTCCGTTTCAT 59.994 47.826 0.00 0.00 36.31 2.57
4520 4727 2.361119 CGATGATACTCCCTCCGTTTCA 59.639 50.000 0.00 0.00 0.00 2.69
4521 4728 2.621998 TCGATGATACTCCCTCCGTTTC 59.378 50.000 0.00 0.00 0.00 2.78
4522 4729 2.662866 TCGATGATACTCCCTCCGTTT 58.337 47.619 0.00 0.00 0.00 3.60
4523 4730 2.359981 TCGATGATACTCCCTCCGTT 57.640 50.000 0.00 0.00 0.00 4.44
4524 4731 2.231529 CTTCGATGATACTCCCTCCGT 58.768 52.381 0.00 0.00 0.00 4.69
4525 4732 1.068194 GCTTCGATGATACTCCCTCCG 60.068 57.143 1.89 0.00 0.00 4.63
4526 4733 1.964223 TGCTTCGATGATACTCCCTCC 59.036 52.381 1.89 0.00 0.00 4.30
4527 4734 2.029470 CCTGCTTCGATGATACTCCCTC 60.029 54.545 1.89 0.00 0.00 4.30
4528 4735 1.967066 CCTGCTTCGATGATACTCCCT 59.033 52.381 1.89 0.00 0.00 4.20
4529 4736 1.689273 ACCTGCTTCGATGATACTCCC 59.311 52.381 1.89 0.00 0.00 4.30
4530 4737 2.546795 CCACCTGCTTCGATGATACTCC 60.547 54.545 1.89 0.00 0.00 3.85
4531 4738 2.748605 CCACCTGCTTCGATGATACTC 58.251 52.381 1.89 0.00 0.00 2.59
4532 4739 1.202580 GCCACCTGCTTCGATGATACT 60.203 52.381 1.89 0.00 36.87 2.12
4533 4740 1.221414 GCCACCTGCTTCGATGATAC 58.779 55.000 1.89 0.00 36.87 2.24
4534 4741 0.829990 TGCCACCTGCTTCGATGATA 59.170 50.000 1.89 0.00 42.00 2.15
4535 4742 0.745845 GTGCCACCTGCTTCGATGAT 60.746 55.000 1.89 0.00 42.00 2.45
4536 4743 1.375908 GTGCCACCTGCTTCGATGA 60.376 57.895 1.89 0.00 42.00 2.92
4537 4744 1.642037 CTGTGCCACCTGCTTCGATG 61.642 60.000 0.00 0.00 42.00 3.84
4538 4745 1.376424 CTGTGCCACCTGCTTCGAT 60.376 57.895 0.00 0.00 42.00 3.59
4539 4746 2.031012 CTGTGCCACCTGCTTCGA 59.969 61.111 0.00 0.00 42.00 3.71
4540 4747 3.730761 GCTGTGCCACCTGCTTCG 61.731 66.667 0.00 0.00 42.00 3.79
4541 4748 2.595463 TGCTGTGCCACCTGCTTC 60.595 61.111 10.45 0.00 42.00 3.86
4542 4749 2.908940 GTGCTGTGCCACCTGCTT 60.909 61.111 10.45 0.00 42.00 3.91
4566 4773 3.994392 GAGACGGCTCTTGTTATGAAACA 59.006 43.478 12.22 0.00 43.85 2.83
4576 4783 0.103937 GAGGATGGAGACGGCTCTTG 59.896 60.000 19.83 0.00 41.06 3.02
4621 4835 1.348064 CACTGGCCCTATCCGGATAA 58.652 55.000 24.06 8.95 36.35 1.75
4623 4837 1.843376 CCACTGGCCCTATCCGGAT 60.843 63.158 22.95 22.95 36.35 4.18
4633 4847 0.326264 ACAGAATGAGTCCACTGGCC 59.674 55.000 0.00 0.00 39.69 5.36
4696 4910 2.105466 GCAGCCAGCAGTAGAGCAC 61.105 63.158 0.00 0.00 44.79 4.40
4706 4920 1.450312 ATAACACCTCGCAGCCAGC 60.450 57.895 0.00 0.00 40.87 4.85
4707 4921 1.091771 CCATAACACCTCGCAGCCAG 61.092 60.000 0.00 0.00 0.00 4.85
4708 4922 1.078497 CCATAACACCTCGCAGCCA 60.078 57.895 0.00 0.00 0.00 4.75
4709 4923 2.472909 GCCATAACACCTCGCAGCC 61.473 63.158 0.00 0.00 0.00 4.85
4746 4960 0.109226 GGCCGTATCGATCCAGTAGC 60.109 60.000 0.00 0.00 0.00 3.58
4805 5019 1.446792 CGTACTGCTCTGCTGGGTG 60.447 63.158 0.00 0.00 0.00 4.61
4810 5024 1.396301 GTACGTACGTACTGCTCTGCT 59.604 52.381 38.40 10.95 45.30 4.24
4811 5025 1.807738 GTACGTACGTACTGCTCTGC 58.192 55.000 38.40 18.70 45.30 4.26
4814 5028 5.561148 TGCATGGTACGTACGTACTGCTC 62.561 52.174 41.18 31.76 45.18 4.26
4815 5029 3.772557 TGCATGGTACGTACGTACTGCT 61.773 50.000 41.18 30.33 45.18 4.24
4820 5034 1.134560 TGCATGCATGGTACGTACGTA 59.865 47.619 27.34 23.60 0.00 3.57
4821 5035 0.108567 TGCATGCATGGTACGTACGT 60.109 50.000 27.34 25.98 0.00 3.57
4822 5036 1.217001 ATGCATGCATGGTACGTACG 58.783 50.000 31.74 15.01 35.03 3.67
4883 5097 0.177141 ACGGTGGTTGGGATACATCG 59.823 55.000 0.00 0.00 43.79 3.84
4979 5193 2.300433 GCATGGCAATACAGGTGATCA 58.700 47.619 0.00 0.00 0.00 2.92
5007 5221 1.525923 CATCACCCTCAGGCCTCAG 59.474 63.158 0.00 0.00 36.11 3.35
5009 5223 1.059006 ATCCATCACCCTCAGGCCTC 61.059 60.000 0.00 0.00 36.11 4.70
5011 5225 1.150081 CATCCATCACCCTCAGGCC 59.850 63.158 0.00 0.00 36.11 5.19
5013 5227 0.179026 CAGCATCCATCACCCTCAGG 60.179 60.000 0.00 0.00 40.04 3.86
5014 5228 0.179026 CCAGCATCCATCACCCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
5015 5229 1.917495 CCAGCATCCATCACCCTCA 59.083 57.895 0.00 0.00 0.00 3.86
5016 5230 1.527844 GCCAGCATCCATCACCCTC 60.528 63.158 0.00 0.00 0.00 4.30
5017 5231 0.695462 TAGCCAGCATCCATCACCCT 60.695 55.000 0.00 0.00 0.00 4.34
5101 5316 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
5102 5317 8.801882 ATAAATCCAAGACAAGTAATTCGGAA 57.198 30.769 0.00 0.00 0.00 4.30
5103 5318 8.265055 AGATAAATCCAAGACAAGTAATTCGGA 58.735 33.333 0.00 0.00 0.00 4.55
5104 5319 8.438676 AGATAAATCCAAGACAAGTAATTCGG 57.561 34.615 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.