Multiple sequence alignment - TraesCS2A01G141500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G141500 chr2A 100.000 4120 0 0 1 4120 86970888 86966769 0.000000e+00 7609.0
1 TraesCS2A01G141500 chr2A 80.500 1841 264 48 327 2124 86909020 86907232 0.000000e+00 1323.0
2 TraesCS2A01G141500 chr2A 86.022 93 9 3 3782 3872 654910240 654910330 3.390000e-16 97.1
3 TraesCS2A01G141500 chr2D 94.368 2699 113 15 1 2692 86514995 86512329 0.000000e+00 4106.0
4 TraesCS2A01G141500 chr2D 92.464 836 45 3 2739 3572 86512314 86511495 0.000000e+00 1179.0
5 TraesCS2A01G141500 chr2D 93.274 446 23 5 3502 3941 86511536 86511092 0.000000e+00 651.0
6 TraesCS2A01G141500 chr2D 93.407 182 8 1 3943 4120 86498446 86498265 2.440000e-67 267.0
7 TraesCS2A01G141500 chr2B 92.801 2695 163 15 1 2685 139354594 139351921 0.000000e+00 3873.0
8 TraesCS2A01G141500 chr2B 78.506 1205 195 36 243 1422 139348824 139347659 0.000000e+00 732.0
9 TraesCS2A01G141500 chr2B 91.494 482 23 11 2682 3148 139351842 139351364 0.000000e+00 647.0
10 TraesCS2A01G141500 chr2B 86.139 202 16 5 3175 3375 139351373 139351183 1.500000e-49 207.0
11 TraesCS2A01G141500 chr3D 93.902 82 2 3 2337 2416 71506492 71506572 2.010000e-23 121.0
12 TraesCS2A01G141500 chr3D 92.105 76 4 1 3790 3865 547927147 547927074 5.630000e-19 106.0
13 TraesCS2A01G141500 chr3D 87.500 80 7 3 2337 2414 462243466 462243544 5.670000e-14 89.8
14 TraesCS2A01G141500 chr1B 90.588 85 6 2 3790 3874 406341773 406341855 1.210000e-20 111.0
15 TraesCS2A01G141500 chr5B 88.043 92 7 3 3776 3865 278886778 278886867 5.630000e-19 106.0
16 TraesCS2A01G141500 chr1A 90.244 82 6 2 3790 3871 533693989 533694068 5.630000e-19 106.0
17 TraesCS2A01G141500 chr4A 90.123 81 6 1 3790 3870 511040498 511040576 2.030000e-18 104.0
18 TraesCS2A01G141500 chr7D 90.000 80 5 3 2337 2414 205494522 205494444 2.620000e-17 100.0
19 TraesCS2A01G141500 chr6A 90.000 80 5 3 2337 2414 233395630 233395552 2.620000e-17 100.0
20 TraesCS2A01G141500 chr5A 90.000 80 5 3 2337 2414 476335264 476335342 2.620000e-17 100.0
21 TraesCS2A01G141500 chr5A 86.458 96 6 4 3774 3864 429750529 429750436 9.430000e-17 99.0
22 TraesCS2A01G141500 chr5A 82.203 118 13 5 3790 3903 46276926 46277039 1.220000e-15 95.3
23 TraesCS2A01G141500 chr3A 90.000 80 5 3 2337 2414 550144896 550144974 2.620000e-17 100.0
24 TraesCS2A01G141500 chr3A 82.653 98 17 0 1095 1192 187439421 187439518 2.040000e-13 87.9
25 TraesCS2A01G141500 chr3A 93.023 43 2 1 2417 2459 155007841 155007800 1.240000e-05 62.1
26 TraesCS2A01G141500 chr5D 88.750 80 6 3 2337 2414 459068821 459068743 1.220000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G141500 chr2A 86966769 86970888 4119 True 7609.000000 7609 100.000000 1 4120 1 chr2A.!!$R2 4119
1 TraesCS2A01G141500 chr2A 86907232 86909020 1788 True 1323.000000 1323 80.500000 327 2124 1 chr2A.!!$R1 1797
2 TraesCS2A01G141500 chr2D 86511092 86514995 3903 True 1978.666667 4106 93.368667 1 3941 3 chr2D.!!$R2 3940
3 TraesCS2A01G141500 chr2B 139347659 139354594 6935 True 1364.750000 3873 87.235000 1 3375 4 chr2B.!!$R1 3374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 706 0.620556 GGGGATGGAGCAGAGTTTCA 59.379 55.0 0.0 0.00 0.00 2.69 F
1666 1706 0.103572 TATCGAGGCGGTAAACCAGC 59.896 55.0 0.0 3.95 35.72 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 2607 0.030101 CACGTTGTTGTTGCGGGAAT 59.97 50.0 0.0 0.0 0.00 3.01 R
3459 3623 0.030101 AACGGGCACAACATTTGTCG 59.97 50.0 0.0 0.0 43.23 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.581289 TTAGAATTCTGTCATGTTCCCTAAAAA 57.419 29.630 18.47 0.00 0.00 1.94
45 46 7.725844 AGAATTCTGTCATGTTCCCTAAAAACT 59.274 33.333 7.30 0.00 0.00 2.66
48 49 8.934023 TTCTGTCATGTTCCCTAAAAACTAAT 57.066 30.769 0.00 0.00 0.00 1.73
71 74 5.794687 TTTAGAACGTTGGCATGTCATAG 57.205 39.130 5.00 0.28 0.00 2.23
85 88 6.098679 GCATGTCATAGTTGTTGCCAATTTA 58.901 36.000 0.00 0.00 32.11 1.40
100 103 4.158949 GCCAATTTATTTTAGGTGGACCGT 59.841 41.667 0.00 0.00 42.08 4.83
109 113 4.895668 TTAGGTGGACCGTCTGTTTTAT 57.104 40.909 0.00 0.00 42.08 1.40
117 121 7.043565 GTGGACCGTCTGTTTTATAATCCTAA 58.956 38.462 0.00 0.00 0.00 2.69
118 122 7.713942 GTGGACCGTCTGTTTTATAATCCTAAT 59.286 37.037 0.00 0.00 0.00 1.73
160 164 1.341679 ACCAGTAGCCACGGATCTACA 60.342 52.381 11.11 0.00 38.05 2.74
169 173 2.027751 GGATCTACAGGCCGACGC 59.972 66.667 0.00 0.00 0.00 5.19
223 227 2.509336 CACGATCGCCAGGACCAC 60.509 66.667 16.60 0.00 0.00 4.16
232 236 2.046507 CAGGACCACCAGCAGCTC 60.047 66.667 0.00 0.00 38.94 4.09
325 329 1.026584 GAGGAGAGGGACGAGCTTAC 58.973 60.000 0.00 0.00 0.00 2.34
395 399 3.382832 CAGGGGGTCTTCGACGCT 61.383 66.667 10.26 0.00 43.54 5.07
478 482 1.524002 CCATGAGCGTGGATGACCT 59.476 57.895 2.49 0.00 42.02 3.85
702 706 0.620556 GGGGATGGAGCAGAGTTTCA 59.379 55.000 0.00 0.00 0.00 2.69
717 721 4.689345 AGAGTTTCAGGTTTAAATCCGACG 59.311 41.667 0.00 0.00 0.00 5.12
765 769 2.187896 TAGATGTGCTGCAGCTGCCA 62.188 55.000 36.61 28.64 44.48 4.92
929 939 4.510038 AACATCAGCCATCAGTTTTCAC 57.490 40.909 0.00 0.00 0.00 3.18
933 943 1.815003 CAGCCATCAGTTTTCACCCTC 59.185 52.381 0.00 0.00 0.00 4.30
936 946 2.778299 CCATCAGTTTTCACCCTCGAA 58.222 47.619 0.00 0.00 0.00 3.71
1100 1117 2.034687 GCCCAAGGAGAAGCTGCA 59.965 61.111 1.02 0.00 0.00 4.41
1285 1305 3.645687 AGTCAGATCCTTCTATGGCCTTC 59.354 47.826 3.32 0.00 0.00 3.46
1341 1361 2.676121 CCGGACCAAGCCATGCAA 60.676 61.111 0.00 0.00 0.00 4.08
1420 1448 9.681062 ATGATGATAACAATGATGATGCTATGA 57.319 29.630 0.00 0.00 0.00 2.15
1480 1517 1.070445 CTGCTGCATTTCACCCCAAAA 59.930 47.619 1.31 0.00 0.00 2.44
1484 1521 2.364970 CTGCATTTCACCCCAAAACTCA 59.635 45.455 0.00 0.00 0.00 3.41
1522 1559 1.202486 TCCGACCGTCTAATCCAATGC 60.202 52.381 0.00 0.00 0.00 3.56
1597 1634 0.652592 CGACCATCTTGCCGAATGTC 59.347 55.000 0.00 0.00 0.00 3.06
1647 1687 1.247567 CCGAGCACCCAGAAACAAAT 58.752 50.000 0.00 0.00 0.00 2.32
1663 1703 3.200483 ACAAATATCGAGGCGGTAAACC 58.800 45.455 0.00 0.00 0.00 3.27
1666 1706 0.103572 TATCGAGGCGGTAAACCAGC 59.896 55.000 0.00 3.95 35.72 4.85
1671 1711 2.388232 GGCGGTAAACCAGCTGACG 61.388 63.158 17.39 10.50 36.36 4.35
1674 1714 1.738030 GCGGTAAACCAGCTGACGTAT 60.738 52.381 17.39 0.00 34.38 3.06
1848 1894 8.014322 TGTACGTGTTTCAGATTAACATTCTC 57.986 34.615 0.00 0.00 37.77 2.87
1969 2015 6.381133 TCACTCGCATATATCATTACTCCCAT 59.619 38.462 0.00 0.00 0.00 4.00
2077 2123 4.982701 GGCTGGTGCTGCCCTGTT 62.983 66.667 12.86 0.00 41.62 3.16
2080 2126 3.496309 CTGGTGCTGCCCTGTTGGA 62.496 63.158 0.00 0.00 35.39 3.53
2127 2173 2.293122 TGTCATTTTCCCTTGCGACTTG 59.707 45.455 0.00 0.00 0.00 3.16
2214 2266 0.478072 TGTCTGTCACCCCTTGCAAT 59.522 50.000 0.00 0.00 0.00 3.56
2253 2305 0.974383 AGTACACCCGTTCTTCCTGG 59.026 55.000 0.00 0.00 0.00 4.45
2261 2313 4.101119 CACCCGTTCTTCCTGGATAAGTAT 59.899 45.833 0.00 0.00 0.00 2.12
2308 2360 2.178580 GGCAATCCCCATTTCAGTTGA 58.821 47.619 0.00 0.00 0.00 3.18
2321 2374 3.417069 TCAGTTGACCATCGTTGGAAT 57.583 42.857 19.34 0.00 46.92 3.01
2379 2442 5.163195 GCCCCCACTAATCTATTTCTCTCAA 60.163 44.000 0.00 0.00 0.00 3.02
2380 2443 6.292150 CCCCCACTAATCTATTTCTCTCAAC 58.708 44.000 0.00 0.00 0.00 3.18
2381 2444 6.126768 CCCCCACTAATCTATTTCTCTCAACA 60.127 42.308 0.00 0.00 0.00 3.33
2382 2445 7.338710 CCCCACTAATCTATTTCTCTCAACAA 58.661 38.462 0.00 0.00 0.00 2.83
2383 2446 7.497249 CCCCACTAATCTATTTCTCTCAACAAG 59.503 40.741 0.00 0.00 0.00 3.16
2384 2447 8.260818 CCCACTAATCTATTTCTCTCAACAAGA 58.739 37.037 0.00 0.00 0.00 3.02
2385 2448 9.658799 CCACTAATCTATTTCTCTCAACAAGAA 57.341 33.333 0.00 0.00 32.23 2.52
2387 2450 9.377312 ACTAATCTATTTCTCTCAACAAGAAGC 57.623 33.333 0.00 0.00 34.42 3.86
2388 2451 9.376075 CTAATCTATTTCTCTCAACAAGAAGCA 57.624 33.333 0.00 0.00 34.42 3.91
2576 2639 1.286501 CAACGTGTGGGGTATCATCG 58.713 55.000 0.00 0.00 0.00 3.84
2594 2657 5.703876 TCATCGATCAACAGGATATTCTCG 58.296 41.667 0.00 0.00 36.00 4.04
2651 2714 7.591421 AATACATGCATTCATCAATCCTTCA 57.409 32.000 0.00 0.00 0.00 3.02
2763 2919 5.074791 GCATGATGCGTTTTGATTTTTGTC 58.925 37.500 0.00 0.00 31.71 3.18
2766 2922 4.208873 TGATGCGTTTTGATTTTTGTCTGC 59.791 37.500 0.00 0.00 0.00 4.26
2775 2933 8.385111 GTTTTGATTTTTGTCTGCATCCATATG 58.615 33.333 0.00 0.00 36.09 1.78
2783 2941 2.265589 TGCATCCATATGTGGCAGAG 57.734 50.000 3.06 0.00 45.63 3.35
2887 3045 0.690192 TTTGAGAAGATGTGGGGCGA 59.310 50.000 0.00 0.00 0.00 5.54
2896 3054 0.966179 ATGTGGGGCGAAGAAAAACC 59.034 50.000 0.00 0.00 0.00 3.27
2903 3061 3.488553 GGGGCGAAGAAAAACCATATTCG 60.489 47.826 1.55 1.55 44.09 3.34
2907 3065 5.449999 GGCGAAGAAAAACCATATTCGGAAT 60.450 40.000 8.49 8.49 42.15 3.01
2908 3066 5.681543 GCGAAGAAAAACCATATTCGGAATC 59.318 40.000 6.49 0.00 42.15 2.52
2909 3067 6.676943 GCGAAGAAAAACCATATTCGGAATCA 60.677 38.462 6.49 0.00 42.15 2.57
2960 3118 1.180029 GTGAGCCGACTTACTGGGTA 58.820 55.000 0.00 0.00 35.78 3.69
3077 3235 8.890124 ATGATGAAGAGATGAAGTACTTGATG 57.110 34.615 14.14 0.00 0.00 3.07
3082 3240 6.463995 AGAGATGAAGTACTTGATGGAGAC 57.536 41.667 14.14 0.00 0.00 3.36
3128 3286 3.616219 TGGTTTGTCCTAAATAGCGCAT 58.384 40.909 11.47 0.00 37.07 4.73
3129 3287 3.376859 TGGTTTGTCCTAAATAGCGCATG 59.623 43.478 11.47 0.00 37.07 4.06
3130 3288 3.243068 GGTTTGTCCTAAATAGCGCATGG 60.243 47.826 11.47 1.88 0.00 3.66
3251 3409 9.177608 ACACAGTTTATGATATTGTGCTTGTAT 57.822 29.630 10.32 0.00 42.05 2.29
3252 3410 9.442033 CACAGTTTATGATATTGTGCTTGTATG 57.558 33.333 0.00 0.00 33.60 2.39
3253 3411 8.131100 ACAGTTTATGATATTGTGCTTGTATGC 58.869 33.333 0.00 0.00 0.00 3.14
3254 3412 8.347771 CAGTTTATGATATTGTGCTTGTATGCT 58.652 33.333 0.00 0.00 0.00 3.79
3255 3413 8.906867 AGTTTATGATATTGTGCTTGTATGCTT 58.093 29.630 0.00 0.00 0.00 3.91
3260 3418 8.224389 TGATATTGTGCTTGTATGCTTAATGT 57.776 30.769 0.00 0.00 0.00 2.71
3261 3419 8.685427 TGATATTGTGCTTGTATGCTTAATGTT 58.315 29.630 0.00 0.00 0.00 2.71
3262 3420 9.520204 GATATTGTGCTTGTATGCTTAATGTTT 57.480 29.630 0.00 0.00 0.00 2.83
3297 3459 3.614092 CACTCCTGTTGGCATGTTCTAT 58.386 45.455 0.00 0.00 0.00 1.98
3304 3466 7.342581 TCCTGTTGGCATGTTCTATGTAATAA 58.657 34.615 0.00 0.00 0.00 1.40
3433 3595 0.874390 TCTTTGAGCAATGACCGCAC 59.126 50.000 0.00 0.00 0.00 5.34
3442 3604 3.529341 ATGACCGCACGGCAGAACA 62.529 57.895 9.43 2.78 39.32 3.18
3454 3616 1.597854 CAGAACAAGTCCGCTGCCA 60.598 57.895 0.00 0.00 0.00 4.92
3459 3623 0.602905 ACAAGTCCGCTGCCAAGTAC 60.603 55.000 0.00 0.00 0.00 2.73
3543 3739 4.188247 TCTCTAACTGTAATGTTGCGCT 57.812 40.909 9.73 0.00 0.00 5.92
3551 3747 2.279741 GTAATGTTGCGCTCATCCTCA 58.720 47.619 9.73 0.00 0.00 3.86
3561 3757 3.243704 GCGCTCATCCTCAGTTCTCTAAT 60.244 47.826 0.00 0.00 0.00 1.73
3597 3793 1.010580 TAATGTTGCGCCCGTATGTG 58.989 50.000 4.18 0.00 0.00 3.21
3690 3888 8.970691 AAGTTAGTATAAAATTGCAGCACTTG 57.029 30.769 0.00 0.00 0.00 3.16
3700 3898 0.811281 GCAGCACTTGTTATGGGACC 59.189 55.000 0.00 0.00 0.00 4.46
3711 3909 1.229131 TATGGGACCGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
3780 3978 6.038356 CCTTCAGCAATGGCAACTTTAATAG 58.962 40.000 0.00 0.00 44.61 1.73
3808 4006 9.588096 ACTTCCCAAAGAAATATAAGAGTGTTT 57.412 29.630 0.00 0.00 36.30 2.83
3872 4070 6.381994 TCTGTACGGAGGGAATACAATTTAGT 59.618 38.462 0.00 0.00 0.00 2.24
3877 4075 6.373495 ACGGAGGGAATACAATTTAGTGTTTC 59.627 38.462 0.00 0.00 32.75 2.78
3928 4126 5.505181 ACTGGAGTGGTAATTGAGTTCAT 57.495 39.130 0.00 0.00 0.00 2.57
3957 4155 9.596308 TTGTTGCTTATATATCCTACCAGTAGA 57.404 33.333 6.39 0.00 35.21 2.59
3958 4156 9.021807 TGTTGCTTATATATCCTACCAGTAGAC 57.978 37.037 6.39 0.00 35.21 2.59
3960 4158 7.124052 TGCTTATATATCCTACCAGTAGACCC 58.876 42.308 6.39 0.00 35.21 4.46
3961 4159 7.124052 GCTTATATATCCTACCAGTAGACCCA 58.876 42.308 6.39 0.00 35.21 4.51
3964 4162 2.526888 TCCTACCAGTAGACCCAGTG 57.473 55.000 6.39 0.00 35.21 3.66
3966 4164 2.380932 TCCTACCAGTAGACCCAGTGAA 59.619 50.000 6.39 0.00 35.21 3.18
3967 4165 3.012502 TCCTACCAGTAGACCCAGTGAAT 59.987 47.826 6.39 0.00 35.21 2.57
3968 4166 3.133003 CCTACCAGTAGACCCAGTGAATG 59.867 52.174 6.39 0.00 35.21 2.67
3969 4167 1.279271 ACCAGTAGACCCAGTGAATGC 59.721 52.381 0.00 0.00 0.00 3.56
3970 4168 1.407437 CCAGTAGACCCAGTGAATGCC 60.407 57.143 0.00 0.00 0.00 4.40
3973 4171 1.279271 GTAGACCCAGTGAATGCCTGT 59.721 52.381 0.00 0.00 0.00 4.00
3975 4908 0.883833 GACCCAGTGAATGCCTGTTG 59.116 55.000 0.00 0.00 0.00 3.33
3980 4913 1.068748 CAGTGAATGCCTGTTGCTCAC 60.069 52.381 0.00 0.00 42.51 3.51
3981 4914 0.953727 GTGAATGCCTGTTGCTCACA 59.046 50.000 0.00 0.00 42.04 3.58
4029 4962 8.219436 CAGCATGTACTGAAACACAATAAAAG 57.781 34.615 0.00 0.00 40.25 2.27
4030 4963 7.862372 CAGCATGTACTGAAACACAATAAAAGT 59.138 33.333 0.00 0.00 40.25 2.66
4031 4964 8.413229 AGCATGTACTGAAACACAATAAAAGTT 58.587 29.630 0.00 0.00 30.75 2.66
4032 4965 8.479280 GCATGTACTGAAACACAATAAAAGTTG 58.521 33.333 0.00 0.00 35.25 3.16
4033 4966 9.515020 CATGTACTGAAACACAATAAAAGTTGT 57.485 29.630 0.00 0.00 42.75 3.32
4034 4967 9.730420 ATGTACTGAAACACAATAAAAGTTGTC 57.270 29.630 0.00 0.00 40.17 3.18
4036 4969 7.079182 ACTGAAACACAATAAAAGTTGTCGA 57.921 32.000 0.00 0.00 40.17 4.20
4037 4970 7.186804 ACTGAAACACAATAAAAGTTGTCGAG 58.813 34.615 0.00 0.00 40.17 4.04
4040 4973 8.666573 TGAAACACAATAAAAGTTGTCGAGTAA 58.333 29.630 0.00 0.00 40.17 2.24
4041 4974 9.493206 GAAACACAATAAAAGTTGTCGAGTAAA 57.507 29.630 0.00 0.00 40.17 2.01
4042 4975 9.843334 AAACACAATAAAAGTTGTCGAGTAAAA 57.157 25.926 0.00 0.00 40.17 1.52
4043 4976 8.831000 ACACAATAAAAGTTGTCGAGTAAAAC 57.169 30.769 0.00 0.00 40.17 2.43
4044 4977 7.911727 ACACAATAAAAGTTGTCGAGTAAAACC 59.088 33.333 0.00 0.00 40.17 3.27
4045 4978 7.911205 CACAATAAAAGTTGTCGAGTAAAACCA 59.089 33.333 0.00 0.00 40.17 3.67
4046 4979 8.626526 ACAATAAAAGTTGTCGAGTAAAACCAT 58.373 29.630 0.00 0.00 37.80 3.55
4047 4980 8.901748 CAATAAAAGTTGTCGAGTAAAACCATG 58.098 33.333 0.00 0.00 0.00 3.66
4049 4982 5.668558 AAGTTGTCGAGTAAAACCATGAC 57.331 39.130 0.00 0.00 0.00 3.06
4050 4983 4.062991 AGTTGTCGAGTAAAACCATGACC 58.937 43.478 0.00 0.00 0.00 4.02
4051 4984 3.755112 TGTCGAGTAAAACCATGACCA 57.245 42.857 0.00 0.00 0.00 4.02
4054 4987 4.454161 TGTCGAGTAAAACCATGACCATTG 59.546 41.667 0.00 0.00 0.00 2.82
4055 4988 4.693566 GTCGAGTAAAACCATGACCATTGA 59.306 41.667 0.00 0.00 0.00 2.57
4056 4989 4.935205 TCGAGTAAAACCATGACCATTGAG 59.065 41.667 0.00 0.00 0.00 3.02
4058 4991 5.390885 CGAGTAAAACCATGACCATTGAGTG 60.391 44.000 0.00 0.00 0.00 3.51
4071 5004 5.895636 CCATTGAGTGGCACTGTATAAAA 57.104 39.130 27.45 9.59 42.12 1.52
4072 5005 6.266168 CCATTGAGTGGCACTGTATAAAAA 57.734 37.500 27.45 7.86 42.12 1.94
4092 5025 6.590234 AAAAATGGAAGCCGAGAAATTAGT 57.410 33.333 0.00 0.00 0.00 2.24
4093 5026 7.696992 AAAAATGGAAGCCGAGAAATTAGTA 57.303 32.000 0.00 0.00 0.00 1.82
4095 5028 6.679327 AATGGAAGCCGAGAAATTAGTAAC 57.321 37.500 0.00 0.00 0.00 2.50
4097 5030 5.175859 TGGAAGCCGAGAAATTAGTAACAG 58.824 41.667 0.00 0.00 0.00 3.16
4098 5031 5.176592 GGAAGCCGAGAAATTAGTAACAGT 58.823 41.667 0.00 0.00 0.00 3.55
4099 5032 6.071221 TGGAAGCCGAGAAATTAGTAACAGTA 60.071 38.462 0.00 0.00 0.00 2.74
4100 5033 6.255237 GGAAGCCGAGAAATTAGTAACAGTAC 59.745 42.308 0.00 0.00 0.00 2.73
4101 5034 5.338365 AGCCGAGAAATTAGTAACAGTACG 58.662 41.667 0.00 0.00 35.20 3.67
4102 5035 4.501921 GCCGAGAAATTAGTAACAGTACGG 59.498 45.833 0.00 0.00 38.72 4.02
4103 5036 5.644644 CCGAGAAATTAGTAACAGTACGGT 58.355 41.667 0.00 0.00 35.20 4.83
4104 5037 5.514204 CCGAGAAATTAGTAACAGTACGGTG 59.486 44.000 0.00 0.00 35.20 4.94
4105 5038 5.514204 CGAGAAATTAGTAACAGTACGGTGG 59.486 44.000 0.00 0.00 35.20 4.61
4106 5039 6.350629 AGAAATTAGTAACAGTACGGTGGT 57.649 37.500 0.00 0.00 35.20 4.16
4107 5040 7.466746 AGAAATTAGTAACAGTACGGTGGTA 57.533 36.000 0.00 0.00 35.20 3.25
4109 5042 9.189156 AGAAATTAGTAACAGTACGGTGGTATA 57.811 33.333 0.00 0.00 35.20 1.47
4110 5043 9.971922 GAAATTAGTAACAGTACGGTGGTATAT 57.028 33.333 0.00 0.00 35.20 0.86
4113 5046 8.518430 TTAGTAACAGTACGGTGGTATATTCA 57.482 34.615 0.00 0.00 35.20 2.57
4114 5047 7.592885 AGTAACAGTACGGTGGTATATTCAT 57.407 36.000 0.00 0.00 35.20 2.57
4115 5048 7.655490 AGTAACAGTACGGTGGTATATTCATC 58.345 38.462 0.00 0.00 35.20 2.92
4118 5051 5.300034 ACAGTACGGTGGTATATTCATCGAA 59.700 40.000 15.45 0.00 40.79 3.71
4119 5052 6.183360 ACAGTACGGTGGTATATTCATCGAAA 60.183 38.462 15.45 4.11 40.79 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.934023 AATTAGTTTTTAGGGAACATGACAGA 57.066 30.769 0.00 0.00 0.00 3.41
43 44 6.205853 TGACATGCCAACGTTCTAAAATTAGT 59.794 34.615 0.00 0.00 32.61 2.24
45 46 6.561737 TGACATGCCAACGTTCTAAAATTA 57.438 33.333 0.00 0.00 0.00 1.40
48 49 5.703592 ACTATGACATGCCAACGTTCTAAAA 59.296 36.000 0.00 0.00 0.00 1.52
85 88 3.782656 AACAGACGGTCCACCTAAAAT 57.217 42.857 4.14 0.00 0.00 1.82
100 103 7.227910 GTGGCGGAATTAGGATTATAAAACAGA 59.772 37.037 0.00 0.00 0.00 3.41
109 113 2.846193 GCAGTGGCGGAATTAGGATTA 58.154 47.619 0.00 0.00 0.00 1.75
169 173 2.500098 TGGAACTAGAACTTGATCCGGG 59.500 50.000 0.00 0.00 31.89 5.73
232 236 2.515290 TGATGCTGATGCGGCTGG 60.515 61.111 0.00 0.00 43.34 4.85
395 399 1.293498 GAGTCCGAAGCAGAAGCCA 59.707 57.895 0.00 0.00 43.56 4.75
478 482 0.250989 GGGGACGGGTTCATTGTCAA 60.251 55.000 0.00 0.00 34.32 3.18
526 530 4.323485 GGTGCATATCCCCGATCAAATCTA 60.323 45.833 0.00 0.00 0.00 1.98
531 535 1.072173 CTGGTGCATATCCCCGATCAA 59.928 52.381 0.00 0.00 0.00 2.57
702 706 1.002773 AGTGGCGTCGGATTTAAACCT 59.997 47.619 0.00 0.00 0.00 3.50
929 939 3.825328 AGATCCCATGATTTTTCGAGGG 58.175 45.455 0.00 0.00 37.65 4.30
933 943 3.382546 AGGCAAGATCCCATGATTTTTCG 59.617 43.478 0.00 0.00 0.00 3.46
936 946 4.261411 AGAGGCAAGATCCCATGATTTT 57.739 40.909 0.00 0.00 0.00 1.82
1079 1096 2.034687 GCTTCTCCTTGGGCAGCA 59.965 61.111 0.00 0.00 0.00 4.41
1100 1117 1.279271 GGCTGTGGTGGTATTGAGAGT 59.721 52.381 0.00 0.00 0.00 3.24
1285 1305 1.298014 GGGTGCACAGGAAGGAGAG 59.702 63.158 20.43 0.00 0.00 3.20
1312 1332 4.131088 GTCCGGCGAGAGGTGTCC 62.131 72.222 9.30 0.00 0.00 4.02
1313 1333 4.131088 GGTCCGGCGAGAGGTGTC 62.131 72.222 9.30 0.00 0.00 3.67
1341 1361 4.363990 CCAGACGCCTGCAGTCGT 62.364 66.667 24.32 24.32 42.97 4.34
1420 1448 4.081420 AGCTTGTTCGACACTGGAAGATAT 60.081 41.667 0.00 0.00 37.43 1.63
1426 1463 3.325870 CATAAGCTTGTTCGACACTGGA 58.674 45.455 9.86 0.00 0.00 3.86
1480 1517 0.908656 AGCTCTGCCTGGTCATGAGT 60.909 55.000 0.00 0.00 0.00 3.41
1484 1521 0.540923 GAGAAGCTCTGCCTGGTCAT 59.459 55.000 0.00 0.00 0.00 3.06
1597 1634 4.052159 ACTCGCTGATGGAATAGAACAG 57.948 45.455 0.00 0.00 0.00 3.16
1647 1687 0.103572 GCTGGTTTACCGCCTCGATA 59.896 55.000 0.00 0.00 39.43 2.92
1663 1703 2.477825 CATCCTTCCATACGTCAGCTG 58.522 52.381 7.63 7.63 0.00 4.24
1666 1706 3.612717 CGATCCATCCTTCCATACGTCAG 60.613 52.174 0.00 0.00 0.00 3.51
1671 1711 3.574396 TGAGTCGATCCATCCTTCCATAC 59.426 47.826 0.00 0.00 0.00 2.39
1674 1714 2.159179 TGAGTCGATCCATCCTTCCA 57.841 50.000 0.00 0.00 0.00 3.53
1848 1894 7.264373 ACCTGAACAAGAACAATTAAGACAG 57.736 36.000 0.00 0.00 0.00 3.51
1969 2015 2.742348 TGGGTAGCGAGGAAGTTGATA 58.258 47.619 0.00 0.00 0.00 2.15
2042 2088 1.687682 GCCCATCTCCTGAGTCTGAGA 60.688 57.143 13.16 13.16 41.55 3.27
2080 2126 3.719939 AGTGCCTGGAGATGGTACT 57.280 52.632 0.00 0.00 43.86 2.73
2185 2237 2.038557 GGGTGACAGACAGGTAACACAT 59.961 50.000 0.00 0.00 41.41 3.21
2199 2251 1.271871 CCACTATTGCAAGGGGTGACA 60.272 52.381 22.31 0.00 35.11 3.58
2261 2313 4.555262 GCCAGCTGTTTGCAACTTAAATA 58.445 39.130 13.81 0.00 45.94 1.40
2345 2398 4.665483 AGATTAGTGGGGGCTAGCTATTTT 59.335 41.667 15.72 0.00 0.00 1.82
2379 2442 1.884579 CTGAGTTGGCATGCTTCTTGT 59.115 47.619 18.92 0.00 0.00 3.16
2380 2443 1.402456 GCTGAGTTGGCATGCTTCTTG 60.402 52.381 18.92 10.86 0.00 3.02
2381 2444 0.886563 GCTGAGTTGGCATGCTTCTT 59.113 50.000 18.92 1.05 0.00 2.52
2382 2445 0.251033 TGCTGAGTTGGCATGCTTCT 60.251 50.000 18.92 13.03 34.56 2.85
2383 2446 0.815734 ATGCTGAGTTGGCATGCTTC 59.184 50.000 18.92 10.83 46.85 3.86
2384 2447 2.971676 ATGCTGAGTTGGCATGCTT 58.028 47.368 18.92 0.65 46.85 3.91
2385 2448 4.757773 ATGCTGAGTTGGCATGCT 57.242 50.000 18.92 0.00 46.85 3.79
2544 2607 0.030101 CACGTTGTTGTTGCGGGAAT 59.970 50.000 0.00 0.00 0.00 3.01
2546 2609 1.745864 ACACGTTGTTGTTGCGGGA 60.746 52.632 0.00 0.00 32.80 5.14
2549 2612 1.585002 CCCACACGTTGTTGTTGCG 60.585 57.895 0.00 0.00 0.00 4.85
2550 2613 1.226831 CCCCACACGTTGTTGTTGC 60.227 57.895 0.00 0.00 0.00 4.17
2551 2614 1.380524 TACCCCACACGTTGTTGTTG 58.619 50.000 0.00 0.00 0.00 3.33
2552 2615 2.223745 GATACCCCACACGTTGTTGTT 58.776 47.619 0.00 0.00 0.00 2.83
2553 2616 1.141254 TGATACCCCACACGTTGTTGT 59.859 47.619 0.00 0.00 0.00 3.32
2576 2639 4.683781 GTCAGCGAGAATATCCTGTTGATC 59.316 45.833 0.00 0.00 34.76 2.92
2628 2691 7.776618 ATGAAGGATTGATGAATGCATGTAT 57.223 32.000 0.00 0.00 34.11 2.29
2629 2692 7.430441 CAATGAAGGATTGATGAATGCATGTA 58.570 34.615 0.00 0.00 43.87 2.29
2630 2693 6.280643 CAATGAAGGATTGATGAATGCATGT 58.719 36.000 0.00 0.00 43.87 3.21
2638 2701 8.920174 AGAAATAATGCAATGAAGGATTGATGA 58.080 29.630 0.00 0.00 43.87 2.92
2651 2714 9.075519 CAACGATGTAAACAGAAATAATGCAAT 57.924 29.630 0.00 0.00 0.00 3.56
2704 2848 2.167487 AGTGGCAGAAAGCTAGCTACTC 59.833 50.000 19.70 17.29 45.17 2.59
2752 2908 7.036829 CACATATGGATGCAGACAAAAATCAA 58.963 34.615 7.80 0.00 36.43 2.57
2775 2933 1.598130 AACGGACTTGCTCTGCCAC 60.598 57.895 0.00 0.00 0.00 5.01
2896 3054 9.605275 AGTCATTGGTATATGATTCCGAATATG 57.395 33.333 0.00 0.00 36.94 1.78
2903 3061 6.656270 TGATGCAGTCATTGGTATATGATTCC 59.344 38.462 0.00 0.00 36.94 3.01
2907 3065 6.820152 GCTATGATGCAGTCATTGGTATATGA 59.180 38.462 14.20 0.00 45.25 2.15
2908 3066 6.238022 CGCTATGATGCAGTCATTGGTATATG 60.238 42.308 14.20 0.00 45.25 1.78
2909 3067 5.814188 CGCTATGATGCAGTCATTGGTATAT 59.186 40.000 14.20 0.00 45.25 0.86
2960 3118 8.508969 AGATCCAATCTTCTTCCAGATAATCT 57.491 34.615 0.00 0.00 35.76 2.40
2975 3133 1.418334 AGCTGCGGTAGATCCAATCT 58.582 50.000 0.00 0.00 43.33 2.40
2981 3139 1.807742 AGACGATAGCTGCGGTAGATC 59.192 52.381 14.07 3.76 42.67 2.75
3045 3203 6.584488 ACTTCATCTCTTCATCATCAGGAAG 58.416 40.000 0.00 0.00 41.42 3.46
3077 3235 0.902531 TGATCAGAAACCCCGTCTCC 59.097 55.000 0.00 0.00 0.00 3.71
3082 3240 1.539065 CCTCGATGATCAGAAACCCCG 60.539 57.143 0.09 0.00 0.00 5.73
3176 3334 0.812549 AGCGCAACAATGATGCATGA 59.187 45.000 15.51 0.00 44.01 3.07
3251 3409 6.073331 GGCAACATTAAGCAAAACATTAAGCA 60.073 34.615 0.00 0.00 0.00 3.91
3252 3410 6.073331 TGGCAACATTAAGCAAAACATTAAGC 60.073 34.615 0.00 0.00 46.17 3.09
3253 3411 7.418840 TGGCAACATTAAGCAAAACATTAAG 57.581 32.000 0.00 0.00 46.17 1.85
3442 3604 1.374252 CGTACTTGGCAGCGGACTT 60.374 57.895 0.00 0.00 0.00 3.01
3454 3616 2.292292 GGGCACAACATTTGTCGTACTT 59.708 45.455 0.00 0.00 43.23 2.24
3459 3623 0.030101 AACGGGCACAACATTTGTCG 59.970 50.000 0.00 0.00 43.23 4.35
3543 3739 8.762645 ACATTACAATTAGAGAACTGAGGATGA 58.237 33.333 0.00 0.00 0.00 2.92
3561 3757 9.335891 CGCAACATTAAGATTACAACATTACAA 57.664 29.630 0.00 0.00 0.00 2.41
3597 3793 8.723942 ATGTAGAACAGGAGTCATAACATTTC 57.276 34.615 0.00 0.00 0.00 2.17
3674 3872 5.244851 TCCCATAACAAGTGCTGCAATTTTA 59.755 36.000 13.16 14.13 0.00 1.52
3678 3876 2.493278 GTCCCATAACAAGTGCTGCAAT 59.507 45.455 2.77 0.00 0.00 3.56
3682 3880 1.086696 CGGTCCCATAACAAGTGCTG 58.913 55.000 0.00 0.00 0.00 4.41
3683 3881 0.981183 TCGGTCCCATAACAAGTGCT 59.019 50.000 0.00 0.00 0.00 4.40
3684 3882 1.369625 CTCGGTCCCATAACAAGTGC 58.630 55.000 0.00 0.00 0.00 4.40
3690 3888 1.962100 CTACTCCCTCGGTCCCATAAC 59.038 57.143 0.00 0.00 0.00 1.89
3700 3898 2.104451 TCCACTAGCTACTACTCCCTCG 59.896 54.545 0.00 0.00 0.00 4.63
3711 3909 4.082517 GCGAGATGAATCATCCACTAGCTA 60.083 45.833 18.69 0.00 41.36 3.32
3780 3978 9.668497 ACACTCTTATATTTCTTTGGGAAGTAC 57.332 33.333 0.00 0.00 35.16 2.73
3835 4033 6.264744 TCCCTCCGTACAGAAATATAAGAGTG 59.735 42.308 0.00 0.00 0.00 3.51
3836 4034 6.371278 TCCCTCCGTACAGAAATATAAGAGT 58.629 40.000 0.00 0.00 0.00 3.24
3872 4070 7.626028 GCTCAAGAAAAAGGCAAAAATGAAACA 60.626 33.333 0.00 0.00 0.00 2.83
3877 4075 5.738118 TGCTCAAGAAAAAGGCAAAAATG 57.262 34.783 0.00 0.00 0.00 2.32
3928 4126 9.914834 ACTGGTAGGATATATAAGCAACAAAAA 57.085 29.630 0.00 0.00 0.00 1.94
3941 4139 5.613973 TCACTGGGTCTACTGGTAGGATATA 59.386 44.000 7.76 0.00 34.06 0.86
3942 4140 4.419200 TCACTGGGTCTACTGGTAGGATAT 59.581 45.833 7.76 0.00 34.06 1.63
3943 4141 3.789840 TCACTGGGTCTACTGGTAGGATA 59.210 47.826 7.76 0.00 34.06 2.59
3945 4143 1.997791 TCACTGGGTCTACTGGTAGGA 59.002 52.381 7.76 0.00 34.06 2.94
3948 4146 2.500098 GCATTCACTGGGTCTACTGGTA 59.500 50.000 0.00 0.00 0.00 3.25
3950 4148 1.407437 GGCATTCACTGGGTCTACTGG 60.407 57.143 0.00 0.00 0.00 4.00
3951 4149 1.556911 AGGCATTCACTGGGTCTACTG 59.443 52.381 0.00 0.00 0.00 2.74
3955 4153 0.773644 AACAGGCATTCACTGGGTCT 59.226 50.000 0.00 0.00 40.23 3.85
3956 4154 0.883833 CAACAGGCATTCACTGGGTC 59.116 55.000 0.00 0.00 40.23 4.46
3957 4155 1.181098 GCAACAGGCATTCACTGGGT 61.181 55.000 0.00 0.00 43.97 4.51
3958 4156 1.588082 GCAACAGGCATTCACTGGG 59.412 57.895 0.00 0.00 43.97 4.45
3981 4914 9.463443 GCTGTTTTTATCTTTGTTTCACATACT 57.537 29.630 0.00 0.00 0.00 2.12
3985 4918 7.763528 ACATGCTGTTTTTATCTTTGTTTCACA 59.236 29.630 0.00 0.00 0.00 3.58
3988 4921 9.463443 AGTACATGCTGTTTTTATCTTTGTTTC 57.537 29.630 0.00 0.00 0.00 2.78
3991 4924 8.165239 TCAGTACATGCTGTTTTTATCTTTGT 57.835 30.769 0.00 0.00 37.70 2.83
3994 4927 8.629158 TGTTTCAGTACATGCTGTTTTTATCTT 58.371 29.630 0.00 0.00 37.70 2.40
3996 4929 7.860373 TGTGTTTCAGTACATGCTGTTTTTATC 59.140 33.333 0.00 0.00 37.70 1.75
3997 4930 7.711846 TGTGTTTCAGTACATGCTGTTTTTAT 58.288 30.769 0.00 0.00 37.70 1.40
3998 4931 7.089770 TGTGTTTCAGTACATGCTGTTTTTA 57.910 32.000 0.00 0.00 37.70 1.52
4003 4936 6.875948 TTATTGTGTTTCAGTACATGCTGT 57.124 33.333 0.00 0.00 37.70 4.40
4005 4938 7.940850 ACTTTTATTGTGTTTCAGTACATGCT 58.059 30.769 0.00 0.00 0.00 3.79
4007 4940 9.515020 ACAACTTTTATTGTGTTTCAGTACATG 57.485 29.630 0.00 0.00 41.29 3.21
4009 4942 7.906010 CGACAACTTTTATTGTGTTTCAGTACA 59.094 33.333 0.00 0.00 42.89 2.90
4011 4944 8.199176 TCGACAACTTTTATTGTGTTTCAGTA 57.801 30.769 0.00 0.00 42.89 2.74
4013 4946 7.186804 ACTCGACAACTTTTATTGTGTTTCAG 58.813 34.615 0.00 0.00 42.89 3.02
4014 4947 7.079182 ACTCGACAACTTTTATTGTGTTTCA 57.921 32.000 0.00 0.00 42.89 2.69
4015 4948 9.493206 TTTACTCGACAACTTTTATTGTGTTTC 57.507 29.630 0.00 0.00 42.89 2.78
4019 4952 7.911205 TGGTTTTACTCGACAACTTTTATTGTG 59.089 33.333 0.00 0.00 42.89 3.33
4020 4953 7.987649 TGGTTTTACTCGACAACTTTTATTGT 58.012 30.769 0.00 0.00 45.52 2.71
4021 4954 8.901748 CATGGTTTTACTCGACAACTTTTATTG 58.098 33.333 0.00 0.00 35.59 1.90
4022 4955 8.842280 TCATGGTTTTACTCGACAACTTTTATT 58.158 29.630 0.00 0.00 0.00 1.40
4023 4956 8.287503 GTCATGGTTTTACTCGACAACTTTTAT 58.712 33.333 0.00 0.00 0.00 1.40
4024 4957 7.254863 GGTCATGGTTTTACTCGACAACTTTTA 60.255 37.037 0.00 0.00 0.00 1.52
4029 4962 3.810941 TGGTCATGGTTTTACTCGACAAC 59.189 43.478 0.00 0.00 0.00 3.32
4030 4963 4.074627 TGGTCATGGTTTTACTCGACAA 57.925 40.909 0.00 0.00 0.00 3.18
4031 4964 3.755112 TGGTCATGGTTTTACTCGACA 57.245 42.857 0.00 0.00 0.00 4.35
4032 4965 4.693566 TCAATGGTCATGGTTTTACTCGAC 59.306 41.667 0.00 0.00 0.00 4.20
4033 4966 4.900684 TCAATGGTCATGGTTTTACTCGA 58.099 39.130 0.00 0.00 0.00 4.04
4034 4967 4.695455 ACTCAATGGTCATGGTTTTACTCG 59.305 41.667 0.00 0.00 0.00 4.18
4036 4969 4.766891 CCACTCAATGGTCATGGTTTTACT 59.233 41.667 0.00 0.00 44.46 2.24
4037 4970 5.059404 CCACTCAATGGTCATGGTTTTAC 57.941 43.478 0.00 0.00 44.46 2.01
4069 5002 6.590234 ACTAATTTCTCGGCTTCCATTTTT 57.410 33.333 0.00 0.00 0.00 1.94
4071 5004 6.657541 TGTTACTAATTTCTCGGCTTCCATTT 59.342 34.615 0.00 0.00 0.00 2.32
4072 5005 6.177610 TGTTACTAATTTCTCGGCTTCCATT 58.822 36.000 0.00 0.00 0.00 3.16
4073 5006 5.741011 TGTTACTAATTTCTCGGCTTCCAT 58.259 37.500 0.00 0.00 0.00 3.41
4074 5007 5.155278 TGTTACTAATTTCTCGGCTTCCA 57.845 39.130 0.00 0.00 0.00 3.53
4075 5008 5.176592 ACTGTTACTAATTTCTCGGCTTCC 58.823 41.667 0.00 0.00 0.00 3.46
4076 5009 6.020837 CGTACTGTTACTAATTTCTCGGCTTC 60.021 42.308 0.00 0.00 0.00 3.86
4078 5011 5.338365 CGTACTGTTACTAATTTCTCGGCT 58.662 41.667 0.00 0.00 0.00 5.52
4079 5012 4.501921 CCGTACTGTTACTAATTTCTCGGC 59.498 45.833 0.00 0.00 0.00 5.54
4080 5013 5.514204 CACCGTACTGTTACTAATTTCTCGG 59.486 44.000 0.00 0.00 39.09 4.63
4081 5014 5.514204 CCACCGTACTGTTACTAATTTCTCG 59.486 44.000 0.00 0.00 0.00 4.04
4082 5015 6.393171 ACCACCGTACTGTTACTAATTTCTC 58.607 40.000 0.00 0.00 0.00 2.87
4083 5016 6.350629 ACCACCGTACTGTTACTAATTTCT 57.649 37.500 0.00 0.00 0.00 2.52
4086 5019 9.971922 GAATATACCACCGTACTGTTACTAATT 57.028 33.333 0.00 0.00 0.00 1.40
4087 5020 9.135189 TGAATATACCACCGTACTGTTACTAAT 57.865 33.333 0.00 0.00 0.00 1.73
4089 5022 8.696043 ATGAATATACCACCGTACTGTTACTA 57.304 34.615 0.00 0.00 0.00 1.82
4090 5023 7.521099 CGATGAATATACCACCGTACTGTTACT 60.521 40.741 0.00 0.00 0.00 2.24
4092 5025 6.486320 TCGATGAATATACCACCGTACTGTTA 59.514 38.462 0.00 0.00 0.00 2.41
4093 5026 5.300034 TCGATGAATATACCACCGTACTGTT 59.700 40.000 0.00 0.00 0.00 3.16
4095 5028 5.366829 TCGATGAATATACCACCGTACTG 57.633 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.