AutoCloner

Multiple sequence alignment - TraesCS2A01G141400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G141400	chr2A	100.000	4346	0	0	1	4346	86897865	86902210	0.000000e+00	8026
1	TraesCS2A01G141400	chr2A	91.053	2470	119	27	1648	4054	86962575	86965005	0.000000e+00	3243
2	TraesCS2A01G141400	chr2A	93.108	827	51	3	3	825	611367255	611366431	0.000000e+00	1206
3	TraesCS2A01G141400	chr2D	94.730	3245	124	15	847	4054	86491502	86494736	0.000000e+00	5001
4	TraesCS2A01G141400	chr2D	91.976	835	55	8	3	827	191502655	191501823	0.000000e+00	1160
5	TraesCS2A01G141400	chr2D	92.019	827	57	5	1	824	511948588	511947768	0.000000e+00	1153
6	TraesCS2A01G141400	chr2B	95.702	1745	48	6	847	2566	139340549	139342291	0.000000e+00	2782
7	TraesCS2A01G141400	chr2B	96.169	1540	49	4	2518	4054	139342276	139343808	0.000000e+00	2508
8	TraesCS2A01G141400	chr3D	93.925	823	45	4	1	821	533649056	533649875	0.000000e+00	1238
9	TraesCS2A01G141400	chr5D	92.745	827	51	4	3	827	345177936	345178755	0.000000e+00	1186
10	TraesCS2A01G141400	chr5D	77.033	492	72	26	3591	4063	432029189	432029658	1.210000e-60	244
11	TraesCS2A01G141400	chr6D	92.727	825	51	4	3	825	11478558	11479375	0.000000e+00	1182
12	TraesCS2A01G141400	chr6D	92.242	825	58	3	3	825	80014720	80013900	0.000000e+00	1164
13	TraesCS2A01G141400	chr7D	92.597	824	52	4	3	824	507666195	507667011	0.000000e+00	1175
14	TraesCS2A01G141400	chr3B	92.476	824	55	3	3	824	41521179	41520361	0.000000e+00	1171
15	TraesCS2A01G141400	chr7B	99.324	296	2	0	4051	4346	368151512	368151217	1.780000e-148	536
16	TraesCS2A01G141400	chr7B	99.315	292	2	0	4055	4346	221918644	221918353	2.980000e-146	529
17	TraesCS2A01G141400	chr7B	99.315	292	2	0	4055	4346	368149363	368149072	2.980000e-146	529
18	TraesCS2A01G141400	chr7B	99.315	292	2	0	4055	4346	727532957	727532666	2.980000e-146	529
19	TraesCS2A01G141400	chr7B	96.795	312	8	2	4037	4346	595533235	595533546	1.790000e-143	520
20	TraesCS2A01G141400	chr6B	99.317	293	2	0	4054	4346	308522257	308521965	8.280000e-147	531
21	TraesCS2A01G141400	chr6A	99.315	292	2	0	4055	4346	65438781	65438490	2.980000e-146	529
22	TraesCS2A01G141400	chr1A	99.315	292	2	0	4055	4346	138264684	138264975	2.980000e-146	529
23	TraesCS2A01G141400	chr1A	99.315	292	2	0	4055	4346	566644292	566644001	2.980000e-146	529
24	TraesCS2A01G141400	chr5A	82.000	250	34	10	3591	3834	547073345	547073589	7.370000e-48	202

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G141400	chr2A	86897865	86902210	4345	False	8026.0	8026	100.0000	1	4346	1	chr2A.!!$F1	4345
1	TraesCS2A01G141400	chr2A	86962575	86965005	2430	False	3243.0	3243	91.0530	1648	4054	1	chr2A.!!$F2	2406
2	TraesCS2A01G141400	chr2A	611366431	611367255	824	True	1206.0	1206	93.1080	3	825	1	chr2A.!!$R1	822
3	TraesCS2A01G141400	chr2D	86491502	86494736	3234	False	5001.0	5001	94.7300	847	4054	1	chr2D.!!$F1	3207
4	TraesCS2A01G141400	chr2D	191501823	191502655	832	True	1160.0	1160	91.9760	3	827	1	chr2D.!!$R1	824
5	TraesCS2A01G141400	chr2D	511947768	511948588	820	True	1153.0	1153	92.0190	1	824	1	chr2D.!!$R2	823
6	TraesCS2A01G141400	chr2B	139340549	139343808	3259	False	2645.0	2782	95.9355	847	4054	2	chr2B.!!$F1	3207
7	TraesCS2A01G141400	chr3D	533649056	533649875	819	False	1238.0	1238	93.9250	1	821	1	chr3D.!!$F1	820
8	TraesCS2A01G141400	chr5D	345177936	345178755	819	False	1186.0	1186	92.7450	3	827	1	chr5D.!!$F1	824
9	TraesCS2A01G141400	chr6D	11478558	11479375	817	False	1182.0	1182	92.7270	3	825	1	chr6D.!!$F1	822
10	TraesCS2A01G141400	chr6D	80013900	80014720	820	True	1164.0	1164	92.2420	3	825	1	chr6D.!!$R1	822
11	TraesCS2A01G141400	chr7D	507666195	507667011	816	False	1175.0	1175	92.5970	3	824	1	chr7D.!!$F1	821
12	TraesCS2A01G141400	chr3B	41520361	41521179	818	True	1171.0	1171	92.4760	3	824	1	chr3B.!!$R1	821
13	TraesCS2A01G141400	chr7B	368149072	368151512	2440	True	532.5	536	99.3195	4051	4346	2	chr7B.!!$R3	295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
731	769	0.250338	ACCAGTTCTGAGGGTTTCGC	60.250	55.0	1.0	0.00	4.70	F
1592	1637	0.039074	CACTCCGTGCTTCTTCTCGT	60.039	55.0	0.0	0.00	4.18	F
2505	2550	1.889530	GCGGTAGCTGTTCCCACTCT	61.890	60.0	0.0	41.01	3.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2715	2823	1.100510	CCTGCTGGTGATGTTCCATG	58.899	55.0	0.51	34.26	3.66	R
2811	2919	0.538584	ATTCTGCGCCATGAGAGTGA	59.461	50.0	4.18	0.00	3.41	R
3973	4113	1.522668	CTTCCACAGCCACAATCGAA	58.477	50.0	0.00	0.00	3.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	3.599730	ATCTCAGTTCAACAGCATCGA	57.400	42.857	0.00	0.00	0.00	3.59
51	52	2.998670	CTCAGTTCAACAGCATCGACAT	59.001	45.455	0.00	0.00	0.00	3.06
60	61	1.450134	GCATCGACATGGCTCCACA	60.450	57.895	0.00	0.00	0.00	4.17
361	363	2.304761	AGGAAAACGATGCTTACCCAGA	59.695	45.455	0.00	0.00	0.00	3.86
406	408	3.963374	TCTGATTCGACCCAATCATCTCT	59.037	43.478	0.00	0.00	41.06	3.10
407	409	4.056740	CTGATTCGACCCAATCATCTCTG	58.943	47.826	0.00	0.00	41.06	3.35
475	483	2.230612	TCCTAGATGGGGAGAGAGGA	57.769	55.000	0.00	0.00	36.20	3.71
589	625	5.452496	CGACTGGATCTGATTCAGGTTACAT	60.452	44.000	25.73	7.42	33.19	2.29
652	690	0.617820	AATGTGGACTCCGCCCTACT	60.618	55.000	6.16	0.00	32.22	2.57
670	708	1.271982	ACTCGGCCTCACTAGTCAGAA	60.272	52.381	0.00	0.00	0.00	3.02
683	721	5.577164	CACTAGTCAGAATTAACGGTCAAGG	59.423	44.000	0.00	0.00	0.00	3.61
731	769	0.250338	ACCAGTTCTGAGGGTTTCGC	60.250	55.000	1.00	0.00	0.00	4.70
754	792	3.295973	CAAGGGAGTGGGAAAAAGTGAA	58.704	45.455	0.00	0.00	0.00	3.18
774	812	5.009610	GTGAACAAAAGTTAAGAGCATGGGA	59.990	40.000	0.00	0.00	0.00	4.37
827	865	9.710900	GGGCATATAGAAATAAAAATCCCTTTG	57.289	33.333	0.00	0.00	0.00	2.77
837	875	9.801873	AAATAAAAATCCCTTTGATGTATGACG	57.198	29.630	0.00	0.00	32.68	4.35
838	876	6.834168	AAAAATCCCTTTGATGTATGACGT	57.166	33.333	0.00	0.00	32.68	4.34
839	877	6.834168	AAAATCCCTTTGATGTATGACGTT	57.166	33.333	0.00	0.00	32.68	3.99
840	878	5.818136	AATCCCTTTGATGTATGACGTTG	57.182	39.130	0.00	0.00	32.68	4.10
841	879	4.280436	TCCCTTTGATGTATGACGTTGT	57.720	40.909	0.00	0.00	0.00	3.32
842	880	5.408880	TCCCTTTGATGTATGACGTTGTA	57.591	39.130	0.00	0.00	0.00	2.41
843	881	5.416083	TCCCTTTGATGTATGACGTTGTAG	58.584	41.667	0.00	0.00	0.00	2.74
844	882	5.046878	TCCCTTTGATGTATGACGTTGTAGT	60.047	40.000	0.00	0.00	0.00	2.73
845	883	5.291128	CCCTTTGATGTATGACGTTGTAGTC	59.709	44.000	0.00	0.00	41.30	2.59
849	887	6.020971	TGATGTATGACGTTGTAGTCTTGT	57.979	37.500	0.00	0.00	41.47	3.16
1294	1339	4.082523	TCTTCCTGCTTCCGCCGG	62.083	66.667	0.00	0.00	41.42	6.13
1347	1392	0.549902	TCATCCCCTCCAAGAGCCAA	60.550	55.000	0.00	0.00	0.00	4.52
1419	1464	2.754658	GCGTCCCTTCTCCTCCGA	60.755	66.667	0.00	0.00	0.00	4.55
1592	1637	0.039074	CACTCCGTGCTTCTTCTCGT	60.039	55.000	0.00	0.00	0.00	4.18
1966	2011	3.366985	GGGCTTCTTAATTTGTGGGTTCG	60.367	47.826	0.00	0.00	0.00	3.95
2085	2130	3.625764	GGCATATCCTTAGTGAACGCAAA	59.374	43.478	0.00	0.00	0.00	3.68
2253	2298	2.134201	CATCGTACATTGCGAGGCTA	57.866	50.000	0.00	0.00	41.83	3.93
2505	2550	1.889530	GCGGTAGCTGTTCCCACTCT	61.890	60.000	0.00	0.00	41.01	3.24
2570	2678	5.763698	ACCATCATGATCATGTTCATCAGAC	59.236	40.000	30.01	0.00	39.72	3.51
2595	2703	3.849911	TGATCACGAGAAGACATGTTCC	58.150	45.455	0.00	0.00	0.00	3.62
2811	2919	8.868522	TTCTTGAGATTCCACTGATAAATGTT	57.131	30.769	0.00	0.00	0.00	2.71
2853	2961	6.672266	TCTCAGTCTTGTAATGGAGAAGTT	57.328	37.500	0.00	0.00	30.37	2.66
2879	2987	1.134946	GCCAGAAATCGGAAACCATGG	59.865	52.381	11.19	11.19	0.00	3.66
2884	2992	2.214376	AATCGGAAACCATGGCAAGA	57.786	45.000	13.04	5.03	0.00	3.02
2892	3000	0.178981	ACCATGGCAAGACAGCAAGT	60.179	50.000	13.04	0.00	35.83	3.16
2958	3066	2.026822	CCTAGCTGACACAATGGGAAGT	60.027	50.000	0.00	0.00	0.00	3.01
3266	3374	3.552294	GCCGAAGCTGATAAGTCTGTTAC	59.448	47.826	0.00	0.00	35.50	2.50
3313	3421	3.160269	CAAGAAGCTGGGGTTCAAGATT	58.840	45.455	11.19	0.00	41.76	2.40
3648	3780	3.642848	TGCCAGCAGAAAAGAAAGGAAAT	59.357	39.130	0.00	0.00	0.00	2.17
3718	3850	8.977505	GTTCAAACTTGAGCAAGCAAATTAATA	58.022	29.630	9.99	0.00	41.99	0.98
3746	3879	7.447238	AGAAAGCAAGTTAGGTAGCAATAAACA	59.553	33.333	0.00	0.00	0.00	2.83
3830	3963	1.552792	AGAGCAACTGGAGCCTTAGTC	59.447	52.381	0.00	0.00	0.00	2.59
3852	3985	4.218635	TCCAGCTCAGATATAATCCGTGTC	59.781	45.833	0.00	0.00	0.00	3.67
3853	3986	4.162072	CAGCTCAGATATAATCCGTGTCG	58.838	47.826	0.00	0.00	0.00	4.35
3854	3987	3.821600	AGCTCAGATATAATCCGTGTCGT	59.178	43.478	0.00	0.00	0.00	4.34
3855	3988	3.914966	GCTCAGATATAATCCGTGTCGTG	59.085	47.826	0.00	0.00	0.00	4.35
3856	3989	4.556898	GCTCAGATATAATCCGTGTCGTGT	60.557	45.833	0.00	0.00	0.00	4.49
3857	3990	4.855531	TCAGATATAATCCGTGTCGTGTG	58.144	43.478	0.00	0.00	0.00	3.82
3858	3991	3.425525	CAGATATAATCCGTGTCGTGTGC	59.574	47.826	0.00	0.00	0.00	4.57
3870	4003	2.078849	TCGTGTGCATCTTCGACATT	57.921	45.000	0.00	0.00	0.00	2.71
3899	4039	1.019673	CCATTTCATGCACCCTCTCG	58.980	55.000	0.00	0.00	0.00	4.04
3907	4047	2.602257	TGCACCCTCTCGTATTCATG	57.398	50.000	0.00	0.00	0.00	3.07
3982	4122	0.518636	CACCACTGCCTTCGATTGTG	59.481	55.000	0.00	0.00	0.00	3.33
4119	6405	0.747852	GAAGGATGGAGGGAGACGTC	59.252	60.000	7.70	7.70	44.41	4.34
4201	6487	1.303317	CTGTTGGCGGCTAGGGTTT	60.303	57.895	11.43	0.00	0.00	3.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	2.169352	GTGAGTATCTGTGGAGCCATGT	59.831	50.000	0.00	0.00	34.92	3.21
51	52	1.937191	TGTGAGTATCTGTGGAGCCA	58.063	50.000	0.00	0.00	34.92	4.75
60	61	3.169099	AGGCACTCTGTTGTGAGTATCT	58.831	45.455	0.00	0.00	44.56	1.98
106	108	6.803366	TCTATCCTAAAGTGGTAGAAACCC	57.197	41.667	0.00	0.00	46.16	4.11
221	223	7.644157	GTGCCCTTTATCTTATTTCAATCGAAC	59.356	37.037	0.00	0.00	0.00	3.95
293	295	9.130661	CATAAATTAGGATGTATTTGACCACCA	57.869	33.333	0.00	0.00	0.00	4.17
361	363	5.900437	AGGCTGATAATTCATGGATTCCAT	58.100	37.500	12.62	12.62	46.37	3.41
407	409	4.832608	GTCCGGCCCATCGACCAC	62.833	72.222	0.00	0.00	0.00	4.16
443	451	4.223923	CCCATCTAGGATTAGGAAGCGATT	59.776	45.833	0.00	0.00	41.22	3.34
475	483	4.363990	CGCCTCCGCCGCATCTAT	62.364	66.667	0.00	0.00	0.00	1.98
505	513	4.400961	GCACTCTTGCCGCCTCCT	62.401	66.667	0.00	0.00	43.66	3.69
589	625	0.306533	GCCGCGAAACTGAAACTCAA	59.693	50.000	8.23	0.00	0.00	3.02
652	690	2.145397	ATTCTGACTAGTGAGGCCGA	57.855	50.000	9.61	0.00	0.00	5.54
683	721	1.689352	CGTTACCGTCGGGTCAATGC	61.689	60.000	17.28	0.00	46.01	3.56
698	736	1.287815	CTGGTCACAGCGGACGTTA	59.712	57.895	0.00	0.00	38.01	3.18
731	769	0.598065	CTTTTTCCCACTCCCTTGCG	59.402	55.000	0.00	0.00	0.00	4.85
754	792	5.774690	TCATTCCCATGCTCTTAACTTTTGT	59.225	36.000	0.00	0.00	0.00	2.83
774	812	8.918202	TGGTTTGTTAGTTCTACTCATTCATT	57.082	30.769	0.00	0.00	0.00	2.57
827	865	7.470079	TCTACAAGACTACAACGTCATACATC	58.530	38.462	0.00	0.00	36.38	3.06
828	866	7.387119	TCTACAAGACTACAACGTCATACAT	57.613	36.000	0.00	0.00	36.38	2.29
829	867	6.806388	TCTACAAGACTACAACGTCATACA	57.194	37.500	0.00	0.00	36.38	2.29
830	868	7.428761	GTCATCTACAAGACTACAACGTCATAC	59.571	40.741	0.00	0.00	36.38	2.39
831	869	7.414873	GGTCATCTACAAGACTACAACGTCATA	60.415	40.741	0.00	0.00	36.38	2.15
832	870	6.323266	GTCATCTACAAGACTACAACGTCAT	58.677	40.000	0.00	0.00	36.38	3.06
833	871	5.335426	GGTCATCTACAAGACTACAACGTCA	60.335	44.000	0.00	0.00	36.38	4.35
834	872	5.094134	GGTCATCTACAAGACTACAACGTC	58.906	45.833	0.00	0.00	35.18	4.34
835	873	4.765856	AGGTCATCTACAAGACTACAACGT	59.234	41.667	0.00	0.00	35.18	3.99
836	874	5.312120	AGGTCATCTACAAGACTACAACG	57.688	43.478	0.00	0.00	35.18	4.10
837	875	9.654663	ATTTTAGGTCATCTACAAGACTACAAC	57.345	33.333	0.00	0.00	35.18	3.32
838	876	9.653287	CATTTTAGGTCATCTACAAGACTACAA	57.347	33.333	0.00	0.00	35.18	2.41
839	877	9.031537	TCATTTTAGGTCATCTACAAGACTACA	57.968	33.333	0.00	0.00	35.18	2.74
840	878	9.303537	GTCATTTTAGGTCATCTACAAGACTAC	57.696	37.037	0.00	0.00	35.18	2.73
841	879	9.031537	TGTCATTTTAGGTCATCTACAAGACTA	57.968	33.333	0.00	0.00	35.18	2.59
842	880	7.907389	TGTCATTTTAGGTCATCTACAAGACT	58.093	34.615	0.00	0.00	35.18	3.24
843	881	8.547967	TTGTCATTTTAGGTCATCTACAAGAC	57.452	34.615	0.00	0.00	0.00	3.01
844	882	9.739276	AATTGTCATTTTAGGTCATCTACAAGA	57.261	29.630	0.00	0.00	0.00	3.02
887	925	0.038251	CCTCACAGCAACTCTACGCA	60.038	55.000	0.00	0.00	0.00	5.24
889	927	0.737715	GGCCTCACAGCAACTCTACG	60.738	60.000	0.00	0.00	0.00	3.51
935	980	0.323178	GACTACCCGGTCTCCTGTCA	60.323	60.000	0.00	0.00	33.81	3.58
1113	1158	2.754375	GTGGGGAAGCGGAAGGAA	59.246	61.111	0.00	0.00	0.00	3.36
1294	1339	1.006805	CGGAGATGATGGCGAGGAC	60.007	63.158	0.00	0.00	0.00	3.85
1395	1440	3.776659	GAGAAGGGACGCCGCTAGC	62.777	68.421	4.06	4.06	34.89	3.42
1419	1464	3.966930	GAGGTGGAGGGAGGCGAGT	62.967	68.421	0.00	0.00	0.00	4.18
1592	1637	2.034066	CGGAAGCAAAGGGGAGCA	59.966	61.111	0.00	0.00	0.00	4.26
1966	2011	1.364626	CTGCTGGCGATCCACAAGAC	61.365	60.000	0.00	0.00	37.47	3.01
1996	2041	4.384537	CCCAAGCTCAACATATCCTGAAGA	60.385	45.833	0.00	0.00	0.00	2.87
2085	2130	2.822707	AAGCAGCAATCTTCCTGGAT	57.177	45.000	0.00	0.00	0.00	3.41
2226	2271	3.612423	TCGCAATGTACGATGCATATAGC	59.388	43.478	19.00	0.00	42.68	2.97
2253	2298	7.231317	CCATAGTTATACAATCCATTTGCAGGT	59.769	37.037	0.00	0.00	39.03	4.00
2496	2541	4.286808	TGAGAATGTGAATGAGAGTGGGAA	59.713	41.667	0.00	0.00	0.00	3.97
2505	2550	7.994334	TGACCATGATTATGAGAATGTGAATGA	59.006	33.333	0.00	0.00	36.36	2.57
2570	2678	2.643933	TGTCTTCTCGTGATCAGCAG	57.356	50.000	0.00	0.00	0.00	4.24
2595	2703	2.385013	TTGTGTCTCCATGATGACCG	57.615	50.000	13.04	0.00	32.67	4.79
2715	2823	1.100510	CCTGCTGGTGATGTTCCATG	58.899	55.000	0.51	0.00	34.26	3.66
2811	2919	0.538584	ATTCTGCGCCATGAGAGTGA	59.461	50.000	4.18	0.00	0.00	3.41
2853	2961	2.394930	TTCCGATTTCTGGCGATTCA	57.605	45.000	0.00	0.00	0.00	2.57
2879	2987	2.558313	GCCGACTTGCTGTCTTGC	59.442	61.111	8.36	7.21	43.25	4.01
2884	2992	2.661866	GTGACGCCGACTTGCTGT	60.662	61.111	0.00	0.00	0.00	4.40
2958	3066	0.955905	TCGAGATCACAACACCGACA	59.044	50.000	0.00	0.00	0.00	4.35
3255	3363	6.817184	AGCACTTTCTCTTGTAACAGACTTA	58.183	36.000	0.00	0.00	0.00	2.24
3266	3374	2.483876	TCCGTGAAGCACTTTCTCTTG	58.516	47.619	0.00	0.00	36.71	3.02
3313	3421	5.812127	CGACACATTCAATCTGGATAGTCAA	59.188	40.000	0.00	0.00	0.00	3.18
3648	3780	3.842732	TGAACTCGCGTTATTCTCTGA	57.157	42.857	5.77	0.00	32.39	3.27
3718	3850	4.891992	TGCTACCTAACTTGCTTTCTCT	57.108	40.909	0.00	0.00	0.00	3.10
3830	3963	4.489810	GACACGGATTATATCTGAGCTGG	58.510	47.826	0.00	0.00	39.01	4.85
3852	3985	1.726248	TCAATGTCGAAGATGCACACG	59.274	47.619	0.00	0.00	40.67	4.49
3853	3986	3.811722	TTCAATGTCGAAGATGCACAC	57.188	42.857	0.00	0.00	40.67	3.82
3854	3987	4.216042	ACAATTCAATGTCGAAGATGCACA	59.784	37.500	0.00	0.00	40.67	4.57
3855	3988	4.726416	ACAATTCAATGTCGAAGATGCAC	58.274	39.130	0.00	0.00	40.67	4.57
3856	3989	6.238456	GGATACAATTCAATGTCGAAGATGCA	60.238	38.462	0.00	0.00	40.67	3.96
3857	3990	6.138761	GGATACAATTCAATGTCGAAGATGC	58.861	40.000	0.00	0.00	40.67	3.91
3899	4039	3.815401	GGCACATACCAGGTCATGAATAC	59.185	47.826	0.00	0.00	0.00	1.89
3907	4047	4.682778	TTATGTAGGCACATACCAGGTC	57.317	45.455	0.00	0.00	45.26	3.85
3931	4071	2.531771	TGACGGAGAAAGACATACCCA	58.468	47.619	0.00	0.00	0.00	4.51
3973	4113	1.522668	CTTCCACAGCCACAATCGAA	58.477	50.000	0.00	0.00	0.00	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.