Multiple sequence alignment - TraesCS2A01G140800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G140800 chr2A 100.000 2645 0 0 1 2645 86062817 86060173 0.000000e+00 4885.0
1 TraesCS2A01G140800 chr2A 89.933 2245 136 38 412 2619 84227924 84230115 0.000000e+00 2811.0
2 TraesCS2A01G140800 chr2A 89.989 1828 131 27 815 2613 84143625 84145429 0.000000e+00 2314.0
3 TraesCS2A01G140800 chr2A 85.844 1872 162 49 815 2613 134867509 134865668 0.000000e+00 1893.0
4 TraesCS2A01G140800 chr2A 95.352 839 33 3 1812 2645 85925937 85925100 0.000000e+00 1328.0
5 TraesCS2A01G140800 chr2A 95.232 839 34 3 1812 2645 85810030 85809193 0.000000e+00 1323.0
6 TraesCS2A01G140800 chr2A 83.402 241 35 5 47 283 705757728 705757967 4.430000e-53 219.0
7 TraesCS2A01G140800 chr2A 95.349 43 2 0 281 323 84206457 84206499 4.720000e-08 69.4
8 TraesCS2A01G140800 chr2D 92.898 2281 95 28 405 2645 85704224 85701971 0.000000e+00 3253.0
9 TraesCS2A01G140800 chr2D 89.795 1705 103 20 939 2613 85251798 85250135 0.000000e+00 2119.0
10 TraesCS2A01G140800 chr2D 91.778 900 52 6 834 1721 84938017 84937128 0.000000e+00 1232.0
11 TraesCS2A01G140800 chr2D 91.778 900 52 6 834 1721 85408814 85407925 0.000000e+00 1232.0
12 TraesCS2A01G140800 chr2D 91.508 895 50 10 834 1715 84780427 84779546 0.000000e+00 1208.0
13 TraesCS2A01G140800 chr2B 91.619 2279 101 29 415 2613 137814945 137812677 0.000000e+00 3068.0
14 TraesCS2A01G140800 chr2B 90.296 1793 103 22 834 2570 137349336 137347559 0.000000e+00 2281.0
15 TraesCS2A01G140800 chr2B 87.187 1717 140 29 835 2485 135357980 135359682 0.000000e+00 1879.0
16 TraesCS2A01G140800 chr2B 92.488 852 53 9 1769 2613 182132977 182132130 0.000000e+00 1208.0
17 TraesCS2A01G140800 chr2B 91.111 900 58 9 834 1721 137014828 137013939 0.000000e+00 1199.0
18 TraesCS2A01G140800 chr2B 100.000 54 0 0 2592 2645 137347559 137347506 1.680000e-17 100.0
19 TraesCS2A01G140800 chr7A 90.899 1824 101 24 834 2610 618195366 618193561 0.000000e+00 2388.0
20 TraesCS2A01G140800 chr7A 88.991 109 8 4 313 420 290920046 290919941 5.940000e-27 132.0
21 TraesCS2A01G140800 chr4A 95.232 839 34 3 1812 2645 349805565 349804728 0.000000e+00 1323.0
22 TraesCS2A01G140800 chr4A 83.974 156 20 5 131 282 81797297 81797143 7.630000e-31 145.0
23 TraesCS2A01G140800 chr3A 96.820 283 7 2 1 283 131075280 131075000 3.080000e-129 472.0
24 TraesCS2A01G140800 chr3A 83.624 287 42 5 1 283 125056655 125056370 5.610000e-67 265.0
25 TraesCS2A01G140800 chr3A 82.927 287 44 5 1 283 712456524 712456239 1.220000e-63 254.0
26 TraesCS2A01G140800 chr5A 96.113 283 11 0 1 283 573320500 573320782 1.850000e-126 462.0
27 TraesCS2A01G140800 chr3B 84.561 285 42 2 1 283 729912700 729912416 5.570000e-72 281.0
28 TraesCS2A01G140800 chr3B 90.826 109 5 5 308 415 229298672 229298776 9.870000e-30 141.0
29 TraesCS2A01G140800 chr1A 83.972 287 41 5 1 283 24152334 24152049 1.210000e-68 270.0
30 TraesCS2A01G140800 chr6B 83.275 287 42 5 1 283 166231132 166230848 2.610000e-65 259.0
31 TraesCS2A01G140800 chr7B 95.455 88 3 1 322 409 81419606 81419520 3.550000e-29 139.0
32 TraesCS2A01G140800 chr7B 90.385 104 8 2 322 425 13869113 13869214 4.590000e-28 135.0
33 TraesCS2A01G140800 chr6D 90.000 110 7 4 311 419 142846303 142846409 3.550000e-29 139.0
34 TraesCS2A01G140800 chr6D 94.186 86 3 1 322 407 388131975 388132058 2.140000e-26 130.0
35 TraesCS2A01G140800 chr5D 95.402 87 3 1 322 408 325476209 325476124 1.280000e-28 137.0
36 TraesCS2A01G140800 chr3D 91.919 99 6 2 322 419 138182734 138182637 1.280000e-28 137.0
37 TraesCS2A01G140800 chr3D 91.753 97 6 2 318 414 603266362 603266268 1.650000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G140800 chr2A 86060173 86062817 2644 True 4885.0 4885 100.000 1 2645 1 chr2A.!!$R3 2644
1 TraesCS2A01G140800 chr2A 84227924 84230115 2191 False 2811.0 2811 89.933 412 2619 1 chr2A.!!$F3 2207
2 TraesCS2A01G140800 chr2A 84143625 84145429 1804 False 2314.0 2314 89.989 815 2613 1 chr2A.!!$F1 1798
3 TraesCS2A01G140800 chr2A 134865668 134867509 1841 True 1893.0 1893 85.844 815 2613 1 chr2A.!!$R4 1798
4 TraesCS2A01G140800 chr2A 85925100 85925937 837 True 1328.0 1328 95.352 1812 2645 1 chr2A.!!$R2 833
5 TraesCS2A01G140800 chr2A 85809193 85810030 837 True 1323.0 1323 95.232 1812 2645 1 chr2A.!!$R1 833
6 TraesCS2A01G140800 chr2D 85701971 85704224 2253 True 3253.0 3253 92.898 405 2645 1 chr2D.!!$R5 2240
7 TraesCS2A01G140800 chr2D 85250135 85251798 1663 True 2119.0 2119 89.795 939 2613 1 chr2D.!!$R3 1674
8 TraesCS2A01G140800 chr2D 84937128 84938017 889 True 1232.0 1232 91.778 834 1721 1 chr2D.!!$R2 887
9 TraesCS2A01G140800 chr2D 85407925 85408814 889 True 1232.0 1232 91.778 834 1721 1 chr2D.!!$R4 887
10 TraesCS2A01G140800 chr2D 84779546 84780427 881 True 1208.0 1208 91.508 834 1715 1 chr2D.!!$R1 881
11 TraesCS2A01G140800 chr2B 137812677 137814945 2268 True 3068.0 3068 91.619 415 2613 1 chr2B.!!$R2 2198
12 TraesCS2A01G140800 chr2B 135357980 135359682 1702 False 1879.0 1879 87.187 835 2485 1 chr2B.!!$F1 1650
13 TraesCS2A01G140800 chr2B 182132130 182132977 847 True 1208.0 1208 92.488 1769 2613 1 chr2B.!!$R3 844
14 TraesCS2A01G140800 chr2B 137013939 137014828 889 True 1199.0 1199 91.111 834 1721 1 chr2B.!!$R1 887
15 TraesCS2A01G140800 chr2B 137347506 137349336 1830 True 1190.5 2281 95.148 834 2645 2 chr2B.!!$R4 1811
16 TraesCS2A01G140800 chr7A 618193561 618195366 1805 True 2388.0 2388 90.899 834 2610 1 chr7A.!!$R2 1776
17 TraesCS2A01G140800 chr4A 349804728 349805565 837 True 1323.0 1323 95.232 1812 2645 1 chr4A.!!$R2 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.033228 CGGGAGCAAGATGCCTAGAG 59.967 60.0 0.0 0.0 46.52 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2007 0.107361 AAGGGCGTAATACCACTGGC 60.107 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.417719 GAAGGAGAGAAACACATGCGT 58.582 47.619 0.00 0.00 0.00 5.24
21 22 3.585862 GAAGGAGAGAAACACATGCGTA 58.414 45.455 0.00 0.00 0.00 4.42
22 23 3.895232 AGGAGAGAAACACATGCGTAT 57.105 42.857 0.00 0.00 0.00 3.06
23 24 4.207891 AGGAGAGAAACACATGCGTATT 57.792 40.909 0.00 0.00 0.00 1.89
24 25 4.184629 AGGAGAGAAACACATGCGTATTC 58.815 43.478 0.00 0.00 0.00 1.75
25 26 3.932710 GGAGAGAAACACATGCGTATTCA 59.067 43.478 0.00 0.00 0.00 2.57
26 27 4.391830 GGAGAGAAACACATGCGTATTCAA 59.608 41.667 0.00 0.00 0.00 2.69
27 28 5.283060 AGAGAAACACATGCGTATTCAAC 57.717 39.130 0.00 0.00 0.00 3.18
28 29 4.754618 AGAGAAACACATGCGTATTCAACA 59.245 37.500 0.00 0.00 0.00 3.33
29 30 5.034554 AGAAACACATGCGTATTCAACAG 57.965 39.130 0.00 0.00 0.00 3.16
30 31 2.900122 ACACATGCGTATTCAACAGC 57.100 45.000 0.00 0.00 0.00 4.40
31 32 2.150390 ACACATGCGTATTCAACAGCA 58.850 42.857 0.00 0.00 40.25 4.41
32 33 2.551887 ACACATGCGTATTCAACAGCAA 59.448 40.909 0.00 0.00 39.70 3.91
33 34 3.165890 CACATGCGTATTCAACAGCAAG 58.834 45.455 0.00 0.00 39.70 4.01
34 35 2.179589 CATGCGTATTCAACAGCAAGC 58.820 47.619 0.00 0.00 39.70 4.01
35 36 1.522668 TGCGTATTCAACAGCAAGCT 58.477 45.000 0.00 0.00 35.62 3.74
38 39 1.466360 CGTATTCAACAGCAAGCTGCC 60.466 52.381 21.11 1.29 46.52 4.85
39 40 1.135286 GTATTCAACAGCAAGCTGCCC 60.135 52.381 21.11 0.00 46.52 5.36
40 41 1.538687 ATTCAACAGCAAGCTGCCCC 61.539 55.000 21.11 0.00 46.52 5.80
41 42 2.913578 CAACAGCAAGCTGCCCCA 60.914 61.111 21.11 0.00 46.52 4.96
42 43 2.914097 AACAGCAAGCTGCCCCAC 60.914 61.111 21.11 0.00 46.52 4.61
43 44 3.736996 AACAGCAAGCTGCCCCACA 62.737 57.895 21.11 0.00 46.52 4.17
44 45 3.677648 CAGCAAGCTGCCCCACAC 61.678 66.667 9.36 0.00 46.52 3.82
45 46 4.982701 AGCAAGCTGCCCCACACC 62.983 66.667 0.00 0.00 46.52 4.16
47 48 4.641645 CAAGCTGCCCCACACCGA 62.642 66.667 0.00 0.00 0.00 4.69
48 49 4.643387 AAGCTGCCCCACACCGAC 62.643 66.667 0.00 0.00 0.00 4.79
71 72 2.747460 GCTGCACGCCATCAGGAA 60.747 61.111 0.00 0.00 36.89 3.36
72 73 3.044059 GCTGCACGCCATCAGGAAC 62.044 63.158 0.00 0.00 36.89 3.62
73 74 1.672030 CTGCACGCCATCAGGAACA 60.672 57.895 0.00 0.00 36.89 3.18
74 75 1.915614 CTGCACGCCATCAGGAACAC 61.916 60.000 0.00 0.00 36.89 3.32
75 76 3.027170 GCACGCCATCAGGAACACG 62.027 63.158 0.00 0.00 36.89 4.49
76 77 2.742372 ACGCCATCAGGAACACGC 60.742 61.111 0.00 0.00 36.89 5.34
77 78 2.434884 CGCCATCAGGAACACGCT 60.435 61.111 0.00 0.00 36.89 5.07
78 79 2.034879 CGCCATCAGGAACACGCTT 61.035 57.895 0.00 0.00 36.89 4.68
79 80 1.503542 GCCATCAGGAACACGCTTG 59.496 57.895 0.00 0.00 36.89 4.01
80 81 0.955428 GCCATCAGGAACACGCTTGA 60.955 55.000 0.00 0.00 36.89 3.02
81 82 1.081892 CCATCAGGAACACGCTTGAG 58.918 55.000 0.00 0.00 36.89 3.02
82 83 0.445436 CATCAGGAACACGCTTGAGC 59.555 55.000 0.00 0.00 37.78 4.26
83 84 0.322975 ATCAGGAACACGCTTGAGCT 59.677 50.000 0.00 0.00 39.32 4.09
84 85 0.601046 TCAGGAACACGCTTGAGCTG 60.601 55.000 0.00 1.83 39.32 4.24
85 86 0.882042 CAGGAACACGCTTGAGCTGT 60.882 55.000 0.00 2.41 39.32 4.40
86 87 0.882042 AGGAACACGCTTGAGCTGTG 60.882 55.000 19.05 19.05 44.66 3.66
87 88 1.571460 GAACACGCTTGAGCTGTGG 59.429 57.895 22.21 11.20 44.00 4.17
88 89 0.880278 GAACACGCTTGAGCTGTGGA 60.880 55.000 22.21 0.00 44.00 4.02
89 90 0.882042 AACACGCTTGAGCTGTGGAG 60.882 55.000 22.21 3.38 44.00 3.86
90 91 1.005748 CACGCTTGAGCTGTGGAGA 60.006 57.895 15.34 0.00 39.78 3.71
91 92 1.005630 ACGCTTGAGCTGTGGAGAC 60.006 57.895 0.00 0.00 39.32 3.36
92 93 1.291588 CGCTTGAGCTGTGGAGACT 59.708 57.895 0.00 0.00 39.32 3.24
93 94 1.013005 CGCTTGAGCTGTGGAGACTG 61.013 60.000 0.00 0.00 39.32 3.51
94 95 0.673022 GCTTGAGCTGTGGAGACTGG 60.673 60.000 0.00 0.00 38.21 4.00
95 96 0.673022 CTTGAGCTGTGGAGACTGGC 60.673 60.000 0.00 0.00 0.00 4.85
96 97 2.125753 GAGCTGTGGAGACTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
97 98 3.655810 GAGCTGTGGAGACTGGCGG 62.656 68.421 0.00 0.00 0.00 6.13
98 99 4.767255 GCTGTGGAGACTGGCGGG 62.767 72.222 0.00 0.00 0.00 6.13
99 100 2.997315 CTGTGGAGACTGGCGGGA 60.997 66.667 0.00 0.00 0.00 5.14
100 101 2.997315 TGTGGAGACTGGCGGGAG 60.997 66.667 0.00 0.00 0.00 4.30
112 113 4.766970 CGGGAGCAAGATGCCTAG 57.233 61.111 0.00 0.00 46.52 3.02
113 114 2.127839 CGGGAGCAAGATGCCTAGA 58.872 57.895 0.00 0.00 46.52 2.43
114 115 0.033228 CGGGAGCAAGATGCCTAGAG 59.967 60.000 0.00 0.00 46.52 2.43
115 116 0.250252 GGGAGCAAGATGCCTAGAGC 60.250 60.000 0.00 0.00 46.52 4.09
116 117 0.250252 GGAGCAAGATGCCTAGAGCC 60.250 60.000 0.00 0.00 46.52 4.70
117 118 0.250252 GAGCAAGATGCCTAGAGCCC 60.250 60.000 0.00 0.00 46.52 5.19
118 119 1.228094 GCAAGATGCCTAGAGCCCC 60.228 63.158 0.00 0.00 42.71 5.80
119 120 1.453669 CAAGATGCCTAGAGCCCCC 59.546 63.158 0.00 0.00 42.71 5.40
120 121 1.059006 CAAGATGCCTAGAGCCCCCT 61.059 60.000 0.00 0.00 42.71 4.79
121 122 0.327964 AAGATGCCTAGAGCCCCCTT 60.328 55.000 0.00 0.00 42.71 3.95
122 123 0.327964 AGATGCCTAGAGCCCCCTTT 60.328 55.000 0.00 0.00 42.71 3.11
123 124 0.553333 GATGCCTAGAGCCCCCTTTT 59.447 55.000 0.00 0.00 42.71 2.27
124 125 0.259938 ATGCCTAGAGCCCCCTTTTG 59.740 55.000 0.00 0.00 42.71 2.44
125 126 1.076705 GCCTAGAGCCCCCTTTTGG 60.077 63.158 0.00 0.00 35.58 3.28
138 139 2.561569 CCTTTTGGGGAGTATGTAGCG 58.438 52.381 0.00 0.00 35.46 4.26
139 140 2.169769 CCTTTTGGGGAGTATGTAGCGA 59.830 50.000 0.00 0.00 35.46 4.93
140 141 3.458189 CTTTTGGGGAGTATGTAGCGAG 58.542 50.000 0.00 0.00 0.00 5.03
141 142 2.447408 TTGGGGAGTATGTAGCGAGA 57.553 50.000 0.00 0.00 0.00 4.04
142 143 1.982660 TGGGGAGTATGTAGCGAGAG 58.017 55.000 0.00 0.00 0.00 3.20
143 144 1.493446 TGGGGAGTATGTAGCGAGAGA 59.507 52.381 0.00 0.00 0.00 3.10
144 145 2.156098 GGGGAGTATGTAGCGAGAGAG 58.844 57.143 0.00 0.00 0.00 3.20
145 146 2.487625 GGGGAGTATGTAGCGAGAGAGT 60.488 54.545 0.00 0.00 0.00 3.24
146 147 3.244491 GGGGAGTATGTAGCGAGAGAGTA 60.244 52.174 0.00 0.00 0.00 2.59
147 148 3.998341 GGGAGTATGTAGCGAGAGAGTAG 59.002 52.174 0.00 0.00 0.00 2.57
148 149 3.434299 GGAGTATGTAGCGAGAGAGTAGC 59.566 52.174 0.00 0.00 0.00 3.58
149 150 3.404899 AGTATGTAGCGAGAGAGTAGCC 58.595 50.000 0.00 0.00 0.00 3.93
150 151 1.611519 ATGTAGCGAGAGAGTAGCCC 58.388 55.000 0.00 0.00 0.00 5.19
151 152 0.547075 TGTAGCGAGAGAGTAGCCCT 59.453 55.000 0.00 0.00 0.00 5.19
152 153 1.767088 TGTAGCGAGAGAGTAGCCCTA 59.233 52.381 0.00 0.00 0.00 3.53
153 154 2.224329 TGTAGCGAGAGAGTAGCCCTAG 60.224 54.545 0.00 0.00 0.00 3.02
154 155 0.109723 AGCGAGAGAGTAGCCCTAGG 59.890 60.000 0.06 0.06 0.00 3.02
155 156 0.108963 GCGAGAGAGTAGCCCTAGGA 59.891 60.000 11.48 0.00 0.00 2.94
156 157 1.271707 GCGAGAGAGTAGCCCTAGGAT 60.272 57.143 11.48 0.31 0.00 3.24
157 158 2.027007 GCGAGAGAGTAGCCCTAGGATA 60.027 54.545 11.48 0.00 0.00 2.59
158 159 3.559597 GCGAGAGAGTAGCCCTAGGATAA 60.560 52.174 11.48 0.00 0.00 1.75
159 160 4.850680 CGAGAGAGTAGCCCTAGGATAAT 58.149 47.826 11.48 1.62 0.00 1.28
160 161 4.638421 CGAGAGAGTAGCCCTAGGATAATG 59.362 50.000 11.48 0.00 0.00 1.90
161 162 4.349365 AGAGAGTAGCCCTAGGATAATGC 58.651 47.826 11.48 4.36 0.00 3.56
162 163 4.045334 AGAGAGTAGCCCTAGGATAATGCT 59.955 45.833 11.48 12.53 32.93 3.79
163 164 4.093011 AGAGTAGCCCTAGGATAATGCTG 58.907 47.826 11.48 0.00 31.08 4.41
164 165 3.177228 AGTAGCCCTAGGATAATGCTGG 58.823 50.000 11.48 0.00 31.08 4.85
165 166 0.695347 AGCCCTAGGATAATGCTGGC 59.305 55.000 11.48 1.03 37.68 4.85
166 167 0.322906 GCCCTAGGATAATGCTGGCC 60.323 60.000 11.48 0.00 0.00 5.36
167 168 1.067295 CCCTAGGATAATGCTGGCCA 58.933 55.000 11.48 4.71 0.00 5.36
168 169 1.271597 CCCTAGGATAATGCTGGCCAC 60.272 57.143 11.48 0.00 0.00 5.01
169 170 1.271597 CCTAGGATAATGCTGGCCACC 60.272 57.143 0.00 0.00 0.00 4.61
170 171 1.701847 CTAGGATAATGCTGGCCACCT 59.298 52.381 12.95 12.95 0.00 4.00
171 172 1.819753 AGGATAATGCTGGCCACCTA 58.180 50.000 0.00 0.00 0.00 3.08
172 173 2.352371 AGGATAATGCTGGCCACCTAT 58.648 47.619 0.00 0.00 0.00 2.57
173 174 3.531059 AGGATAATGCTGGCCACCTATA 58.469 45.455 0.00 0.00 0.00 1.31
174 175 4.114597 AGGATAATGCTGGCCACCTATAT 58.885 43.478 0.00 0.00 0.00 0.86
175 176 4.164988 AGGATAATGCTGGCCACCTATATC 59.835 45.833 0.00 8.24 0.00 1.63
176 177 4.164988 GGATAATGCTGGCCACCTATATCT 59.835 45.833 0.00 0.00 0.00 1.98
177 178 5.339530 GGATAATGCTGGCCACCTATATCTT 60.340 44.000 0.00 0.00 0.00 2.40
178 179 3.710209 ATGCTGGCCACCTATATCTTC 57.290 47.619 0.00 0.00 0.00 2.87
179 180 2.694397 TGCTGGCCACCTATATCTTCT 58.306 47.619 0.00 0.00 0.00 2.85
180 181 3.048600 TGCTGGCCACCTATATCTTCTT 58.951 45.455 0.00 0.00 0.00 2.52
181 182 3.459598 TGCTGGCCACCTATATCTTCTTT 59.540 43.478 0.00 0.00 0.00 2.52
182 183 4.079787 TGCTGGCCACCTATATCTTCTTTT 60.080 41.667 0.00 0.00 0.00 2.27
183 184 4.517075 GCTGGCCACCTATATCTTCTTTTC 59.483 45.833 0.00 0.00 0.00 2.29
184 185 4.703897 TGGCCACCTATATCTTCTTTTCG 58.296 43.478 0.00 0.00 0.00 3.46
185 186 4.163458 TGGCCACCTATATCTTCTTTTCGT 59.837 41.667 0.00 0.00 0.00 3.85
186 187 5.123936 GGCCACCTATATCTTCTTTTCGTT 58.876 41.667 0.00 0.00 0.00 3.85
187 188 5.589050 GGCCACCTATATCTTCTTTTCGTTT 59.411 40.000 0.00 0.00 0.00 3.60
188 189 6.238402 GGCCACCTATATCTTCTTTTCGTTTC 60.238 42.308 0.00 0.00 0.00 2.78
189 190 6.539103 GCCACCTATATCTTCTTTTCGTTTCT 59.461 38.462 0.00 0.00 0.00 2.52
190 191 7.254488 GCCACCTATATCTTCTTTTCGTTTCTC 60.254 40.741 0.00 0.00 0.00 2.87
191 192 7.224949 CCACCTATATCTTCTTTTCGTTTCTCC 59.775 40.741 0.00 0.00 0.00 3.71
192 193 7.982354 CACCTATATCTTCTTTTCGTTTCTCCT 59.018 37.037 0.00 0.00 0.00 3.69
193 194 8.541234 ACCTATATCTTCTTTTCGTTTCTCCTT 58.459 33.333 0.00 0.00 0.00 3.36
194 195 9.384764 CCTATATCTTCTTTTCGTTTCTCCTTT 57.615 33.333 0.00 0.00 0.00 3.11
197 198 6.753107 TCTTCTTTTCGTTTCTCCTTTTGT 57.247 33.333 0.00 0.00 0.00 2.83
198 199 7.852971 TCTTCTTTTCGTTTCTCCTTTTGTA 57.147 32.000 0.00 0.00 0.00 2.41
199 200 7.691158 TCTTCTTTTCGTTTCTCCTTTTGTAC 58.309 34.615 0.00 0.00 0.00 2.90
200 201 6.367686 TCTTTTCGTTTCTCCTTTTGTACC 57.632 37.500 0.00 0.00 0.00 3.34
201 202 5.297527 TCTTTTCGTTTCTCCTTTTGTACCC 59.702 40.000 0.00 0.00 0.00 3.69
202 203 4.426736 TTCGTTTCTCCTTTTGTACCCT 57.573 40.909 0.00 0.00 0.00 4.34
203 204 4.426736 TCGTTTCTCCTTTTGTACCCTT 57.573 40.909 0.00 0.00 0.00 3.95
204 205 4.131596 TCGTTTCTCCTTTTGTACCCTTG 58.868 43.478 0.00 0.00 0.00 3.61
205 206 4.131596 CGTTTCTCCTTTTGTACCCTTGA 58.868 43.478 0.00 0.00 0.00 3.02
206 207 4.760204 CGTTTCTCCTTTTGTACCCTTGAT 59.240 41.667 0.00 0.00 0.00 2.57
207 208 5.106673 CGTTTCTCCTTTTGTACCCTTGATC 60.107 44.000 0.00 0.00 0.00 2.92
208 209 4.202245 TCTCCTTTTGTACCCTTGATCG 57.798 45.455 0.00 0.00 0.00 3.69
209 210 2.678336 CTCCTTTTGTACCCTTGATCGC 59.322 50.000 0.00 0.00 0.00 4.58
210 211 2.304761 TCCTTTTGTACCCTTGATCGCT 59.695 45.455 0.00 0.00 0.00 4.93
211 212 3.081804 CCTTTTGTACCCTTGATCGCTT 58.918 45.455 0.00 0.00 0.00 4.68
212 213 3.119849 CCTTTTGTACCCTTGATCGCTTG 60.120 47.826 0.00 0.00 0.00 4.01
213 214 3.410631 TTTGTACCCTTGATCGCTTGA 57.589 42.857 0.00 0.00 0.00 3.02
214 215 3.627395 TTGTACCCTTGATCGCTTGAT 57.373 42.857 0.00 0.00 34.17 2.57
222 223 3.788672 GATCGCTTGATCACCCCTT 57.211 52.632 0.00 0.00 46.42 3.95
223 224 1.303309 GATCGCTTGATCACCCCTTG 58.697 55.000 0.00 0.00 46.42 3.61
224 225 0.620556 ATCGCTTGATCACCCCTTGT 59.379 50.000 0.00 0.00 0.00 3.16
225 226 0.400213 TCGCTTGATCACCCCTTGTT 59.600 50.000 0.00 0.00 0.00 2.83
226 227 0.804989 CGCTTGATCACCCCTTGTTC 59.195 55.000 0.00 0.00 0.00 3.18
227 228 1.611673 CGCTTGATCACCCCTTGTTCT 60.612 52.381 0.00 0.00 0.00 3.01
228 229 2.087646 GCTTGATCACCCCTTGTTCTC 58.912 52.381 0.00 0.00 0.00 2.87
229 230 2.716217 CTTGATCACCCCTTGTTCTCC 58.284 52.381 0.00 0.00 0.00 3.71
230 231 0.991920 TGATCACCCCTTGTTCTCCC 59.008 55.000 0.00 0.00 0.00 4.30
231 232 0.991920 GATCACCCCTTGTTCTCCCA 59.008 55.000 0.00 0.00 0.00 4.37
232 233 1.566231 GATCACCCCTTGTTCTCCCAT 59.434 52.381 0.00 0.00 0.00 4.00
233 234 1.455822 TCACCCCTTGTTCTCCCATT 58.544 50.000 0.00 0.00 0.00 3.16
234 235 1.075374 TCACCCCTTGTTCTCCCATTG 59.925 52.381 0.00 0.00 0.00 2.82
235 236 0.251787 ACCCCTTGTTCTCCCATTGC 60.252 55.000 0.00 0.00 0.00 3.56
236 237 0.040204 CCCCTTGTTCTCCCATTGCT 59.960 55.000 0.00 0.00 0.00 3.91
237 238 1.550869 CCCCTTGTTCTCCCATTGCTT 60.551 52.381 0.00 0.00 0.00 3.91
238 239 2.250924 CCCTTGTTCTCCCATTGCTTT 58.749 47.619 0.00 0.00 0.00 3.51
239 240 2.232208 CCCTTGTTCTCCCATTGCTTTC 59.768 50.000 0.00 0.00 0.00 2.62
240 241 3.160269 CCTTGTTCTCCCATTGCTTTCT 58.840 45.455 0.00 0.00 0.00 2.52
241 242 3.192212 CCTTGTTCTCCCATTGCTTTCTC 59.808 47.826 0.00 0.00 0.00 2.87
242 243 2.795329 TGTTCTCCCATTGCTTTCTCC 58.205 47.619 0.00 0.00 0.00 3.71
243 244 2.376518 TGTTCTCCCATTGCTTTCTCCT 59.623 45.455 0.00 0.00 0.00 3.69
244 245 3.587061 TGTTCTCCCATTGCTTTCTCCTA 59.413 43.478 0.00 0.00 0.00 2.94
245 246 4.042809 TGTTCTCCCATTGCTTTCTCCTAA 59.957 41.667 0.00 0.00 0.00 2.69
246 247 4.927267 TCTCCCATTGCTTTCTCCTAAA 57.073 40.909 0.00 0.00 0.00 1.85
247 248 5.456921 TCTCCCATTGCTTTCTCCTAAAT 57.543 39.130 0.00 0.00 0.00 1.40
248 249 5.440610 TCTCCCATTGCTTTCTCCTAAATC 58.559 41.667 0.00 0.00 0.00 2.17
249 250 5.044919 TCTCCCATTGCTTTCTCCTAAATCA 60.045 40.000 0.00 0.00 0.00 2.57
250 251 5.579047 TCCCATTGCTTTCTCCTAAATCAA 58.421 37.500 0.00 0.00 0.00 2.57
251 252 6.197168 TCCCATTGCTTTCTCCTAAATCAAT 58.803 36.000 0.00 0.00 0.00 2.57
252 253 6.097270 TCCCATTGCTTTCTCCTAAATCAATG 59.903 38.462 15.15 15.15 39.07 2.82
253 254 6.097270 CCCATTGCTTTCTCCTAAATCAATGA 59.903 38.462 20.29 0.00 40.75 2.57
254 255 7.364056 CCCATTGCTTTCTCCTAAATCAATGAA 60.364 37.037 20.29 0.00 40.75 2.57
255 256 7.705325 CCATTGCTTTCTCCTAAATCAATGAAG 59.295 37.037 20.29 7.97 40.75 3.02
256 257 6.199937 TGCTTTCTCCTAAATCAATGAAGC 57.800 37.500 0.00 0.00 0.00 3.86
257 258 5.126061 TGCTTTCTCCTAAATCAATGAAGCC 59.874 40.000 0.00 0.00 0.00 4.35
258 259 5.731686 GCTTTCTCCTAAATCAATGAAGCCG 60.732 44.000 0.00 0.00 0.00 5.52
259 260 3.808728 TCTCCTAAATCAATGAAGCCGG 58.191 45.455 0.00 0.00 0.00 6.13
260 261 3.454447 TCTCCTAAATCAATGAAGCCGGA 59.546 43.478 5.05 0.00 0.00 5.14
261 262 4.080582 TCTCCTAAATCAATGAAGCCGGAA 60.081 41.667 5.05 0.00 0.00 4.30
262 263 4.594970 TCCTAAATCAATGAAGCCGGAAA 58.405 39.130 5.05 0.00 0.00 3.13
263 264 4.398044 TCCTAAATCAATGAAGCCGGAAAC 59.602 41.667 5.05 0.00 0.00 2.78
264 265 3.592898 AAATCAATGAAGCCGGAAACC 57.407 42.857 5.05 0.00 0.00 3.27
265 266 1.474330 ATCAATGAAGCCGGAAACCC 58.526 50.000 5.05 0.00 0.00 4.11
266 267 0.610785 TCAATGAAGCCGGAAACCCC 60.611 55.000 5.05 0.00 0.00 4.95
276 277 3.970205 GGAAACCCCGGATCTTTCA 57.030 52.632 0.73 0.00 0.00 2.69
277 278 2.209690 GGAAACCCCGGATCTTTCAA 57.790 50.000 0.73 0.00 0.00 2.69
278 279 2.521126 GGAAACCCCGGATCTTTCAAA 58.479 47.619 0.73 0.00 0.00 2.69
279 280 2.894765 GGAAACCCCGGATCTTTCAAAA 59.105 45.455 0.73 0.00 0.00 2.44
280 281 3.322541 GGAAACCCCGGATCTTTCAAAAA 59.677 43.478 0.73 0.00 0.00 1.94
297 298 2.296073 AAAAATGCCCTAACCGTCCA 57.704 45.000 0.00 0.00 0.00 4.02
298 299 2.296073 AAAATGCCCTAACCGTCCAA 57.704 45.000 0.00 0.00 0.00 3.53
299 300 2.296073 AAATGCCCTAACCGTCCAAA 57.704 45.000 0.00 0.00 0.00 3.28
300 301 2.296073 AATGCCCTAACCGTCCAAAA 57.704 45.000 0.00 0.00 0.00 2.44
301 302 2.525105 ATGCCCTAACCGTCCAAAAT 57.475 45.000 0.00 0.00 0.00 1.82
302 303 3.655615 ATGCCCTAACCGTCCAAAATA 57.344 42.857 0.00 0.00 0.00 1.40
303 304 3.436577 TGCCCTAACCGTCCAAAATAA 57.563 42.857 0.00 0.00 0.00 1.40
304 305 3.349022 TGCCCTAACCGTCCAAAATAAG 58.651 45.455 0.00 0.00 0.00 1.73
305 306 2.098607 GCCCTAACCGTCCAAAATAAGC 59.901 50.000 0.00 0.00 0.00 3.09
306 307 3.349022 CCCTAACCGTCCAAAATAAGCA 58.651 45.455 0.00 0.00 0.00 3.91
307 308 3.128068 CCCTAACCGTCCAAAATAAGCAC 59.872 47.826 0.00 0.00 0.00 4.40
308 309 3.754323 CCTAACCGTCCAAAATAAGCACA 59.246 43.478 0.00 0.00 0.00 4.57
309 310 3.915437 AACCGTCCAAAATAAGCACAG 57.085 42.857 0.00 0.00 0.00 3.66
310 311 2.858745 ACCGTCCAAAATAAGCACAGT 58.141 42.857 0.00 0.00 0.00 3.55
311 312 4.010667 ACCGTCCAAAATAAGCACAGTA 57.989 40.909 0.00 0.00 0.00 2.74
312 313 4.000988 ACCGTCCAAAATAAGCACAGTAG 58.999 43.478 0.00 0.00 0.00 2.57
313 314 4.000988 CCGTCCAAAATAAGCACAGTAGT 58.999 43.478 0.00 0.00 0.00 2.73
328 329 6.761099 CACAGTAGTGTAGATGTACTTCCT 57.239 41.667 2.08 0.00 40.92 3.36
329 330 6.787225 CACAGTAGTGTAGATGTACTTCCTC 58.213 44.000 2.08 0.63 40.92 3.71
330 331 5.887035 ACAGTAGTGTAGATGTACTTCCTCC 59.113 44.000 0.00 0.00 34.05 4.30
331 332 5.007823 CAGTAGTGTAGATGTACTTCCTCCG 59.992 48.000 5.19 0.00 0.00 4.63
332 333 3.965694 AGTGTAGATGTACTTCCTCCGT 58.034 45.455 5.19 0.00 0.00 4.69
333 334 3.946558 AGTGTAGATGTACTTCCTCCGTC 59.053 47.826 5.19 0.00 0.00 4.79
334 335 3.066481 GTGTAGATGTACTTCCTCCGTCC 59.934 52.174 5.19 0.00 0.00 4.79
335 336 1.777941 AGATGTACTTCCTCCGTCCC 58.222 55.000 5.19 0.00 0.00 4.46
336 337 1.006758 AGATGTACTTCCTCCGTCCCA 59.993 52.381 5.19 0.00 0.00 4.37
337 338 2.040178 GATGTACTTCCTCCGTCCCAT 58.960 52.381 0.00 0.00 0.00 4.00
338 339 2.832643 TGTACTTCCTCCGTCCCATA 57.167 50.000 0.00 0.00 0.00 2.74
339 340 3.104519 TGTACTTCCTCCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
340 341 3.649843 TGTACTTCCTCCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
341 342 4.806892 TGTACTTCCTCCGTCCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
342 343 5.399991 TGTACTTCCTCCGTCCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
343 344 6.554784 TGTACTTCCTCCGTCCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
344 345 7.011994 TGTACTTCCTCCGTCCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
345 346 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
346 347 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
347 348 6.785963 ACTTCCTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
348 349 6.600882 TCCTCCGTCCCATAATATAAGAAC 57.399 41.667 0.00 0.00 0.00 3.01
349 350 5.184479 TCCTCCGTCCCATAATATAAGAACG 59.816 44.000 0.00 0.00 0.00 3.95
350 351 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
351 352 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
352 353 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
353 354 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
354 355 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
379 380 8.948853 TTCAATCTAACATAGCTTGAAAAACG 57.051 30.769 11.77 0.00 43.70 3.60
380 381 8.094798 TCAATCTAACATAGCTTGAAAAACGT 57.905 30.769 0.00 0.00 37.81 3.99
381 382 8.564574 TCAATCTAACATAGCTTGAAAAACGTT 58.435 29.630 0.00 0.00 37.81 3.99
382 383 8.840867 CAATCTAACATAGCTTGAAAAACGTTC 58.159 33.333 0.00 0.00 34.69 3.95
383 384 7.724305 TCTAACATAGCTTGAAAAACGTTCT 57.276 32.000 0.00 0.00 0.00 3.01
384 385 8.149973 TCTAACATAGCTTGAAAAACGTTCTT 57.850 30.769 0.00 0.00 0.00 2.52
385 386 9.263538 TCTAACATAGCTTGAAAAACGTTCTTA 57.736 29.630 0.00 0.00 0.00 2.10
394 395 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
397 398 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
398 399 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
399 400 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
400 401 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
401 402 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
402 403 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
403 404 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
410 411 0.337082 TGGGACGGAGGGAGTATTGA 59.663 55.000 0.00 0.00 0.00 2.57
581 605 3.782244 CGACCAGCAGAGCGCAAC 61.782 66.667 11.47 2.78 46.13 4.17
649 674 1.469940 GGAGATCGTCGTGCATCAACT 60.470 52.381 0.00 0.00 0.00 3.16
827 883 0.179073 AGCCATCGCGTAAGATTGCT 60.179 50.000 5.77 1.73 42.50 3.91
984 1046 0.117340 CCCTCCCCGATCCCTAGATT 59.883 60.000 0.00 0.00 30.90 2.40
993 1065 3.384789 CCGATCCCTAGATTCAAGACACA 59.615 47.826 0.00 0.00 30.90 3.72
1433 1563 3.798954 GATGCCCGGCTCCTTCGAG 62.799 68.421 11.61 0.00 39.33 4.04
1503 1633 4.694233 CCGCTGCTGGTGCTGACT 62.694 66.667 0.00 0.00 40.01 3.41
1508 1638 2.433318 GCTGGTGCTGACTCCGTC 60.433 66.667 0.00 0.00 36.03 4.79
1599 1729 1.678970 AAGCACCCGGATTCCAAGC 60.679 57.895 0.73 0.82 0.00 4.01
1603 1733 2.203070 CCCGGATTCCAAGCCTCG 60.203 66.667 0.73 0.00 30.63 4.63
1604 1734 2.897350 CCGGATTCCAAGCCTCGC 60.897 66.667 0.00 0.00 30.63 5.03
1605 1735 2.187946 CGGATTCCAAGCCTCGCT 59.812 61.111 3.09 0.00 42.56 4.93
1606 1736 1.884926 CGGATTCCAAGCCTCGCTC 60.885 63.158 3.09 0.00 38.25 5.03
1607 1737 1.524482 GGATTCCAAGCCTCGCTCT 59.476 57.895 0.00 0.00 38.25 4.09
1608 1738 0.107459 GGATTCCAAGCCTCGCTCTT 60.107 55.000 0.00 0.00 38.25 2.85
1609 1739 1.294857 GATTCCAAGCCTCGCTCTTC 58.705 55.000 0.00 0.00 38.25 2.87
1610 1740 0.460987 ATTCCAAGCCTCGCTCTTCG 60.461 55.000 0.00 0.00 38.25 3.79
1611 1741 2.507110 TTCCAAGCCTCGCTCTTCGG 62.507 60.000 0.00 0.00 38.25 4.30
1710 1840 2.045926 CTACACCACTGCCTGCCC 60.046 66.667 0.00 0.00 0.00 5.36
1767 1906 1.802960 CAACTCTGCGTGCAAGAAGAT 59.197 47.619 11.04 0.00 0.00 2.40
1820 1982 3.594775 CACCGCTGCAGCACCAAA 61.595 61.111 36.03 0.00 42.21 3.28
1882 2051 3.933332 CCCTTGCTAGTCTTTTACCTTCG 59.067 47.826 0.00 0.00 0.00 3.79
1934 2103 2.299993 TTGCATCTCTAGGTTCTGCG 57.700 50.000 0.00 0.00 35.63 5.18
1950 2119 1.131126 CTGCGCTTAACCACCAAGATG 59.869 52.381 9.73 0.00 0.00 2.90
1962 2131 4.021016 ACCACCAAGATGTCTAGTGTTCTC 60.021 45.833 10.44 0.00 31.90 2.87
1976 2145 5.310409 AGTGTTCTCTGAATCCCTTTCAA 57.690 39.130 0.00 0.00 43.64 2.69
2115 2287 8.074613 AGGGTTTAAGTAAATAAAGGGCATTC 57.925 34.615 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.417719 ACGCATGTGTTTCTCTCCTTC 58.582 47.619 5.96 0.00 0.00 3.46
1 2 2.550830 ACGCATGTGTTTCTCTCCTT 57.449 45.000 5.96 0.00 0.00 3.36
2 3 3.895232 ATACGCATGTGTTTCTCTCCT 57.105 42.857 18.51 0.00 0.00 3.69
3 4 3.932710 TGAATACGCATGTGTTTCTCTCC 59.067 43.478 18.51 1.56 28.62 3.71
4 5 5.107104 TGTTGAATACGCATGTGTTTCTCTC 60.107 40.000 18.51 5.25 28.62 3.20
5 6 4.754618 TGTTGAATACGCATGTGTTTCTCT 59.245 37.500 18.51 0.00 28.62 3.10
6 7 5.029650 TGTTGAATACGCATGTGTTTCTC 57.970 39.130 18.51 11.87 28.62 2.87
7 8 4.613622 GCTGTTGAATACGCATGTGTTTCT 60.614 41.667 18.51 2.13 28.62 2.52
8 9 3.603770 GCTGTTGAATACGCATGTGTTTC 59.396 43.478 18.51 18.82 28.62 2.78
9 10 3.004210 TGCTGTTGAATACGCATGTGTTT 59.996 39.130 18.51 6.90 33.51 2.83
10 11 2.551887 TGCTGTTGAATACGCATGTGTT 59.448 40.909 18.51 0.00 33.51 3.32
11 12 2.150390 TGCTGTTGAATACGCATGTGT 58.850 42.857 17.35 17.35 33.51 3.72
12 13 2.898181 TGCTGTTGAATACGCATGTG 57.102 45.000 4.30 4.30 33.51 3.21
13 14 2.414559 GCTTGCTGTTGAATACGCATGT 60.415 45.455 0.00 0.00 36.61 3.21
14 15 2.159476 AGCTTGCTGTTGAATACGCATG 60.159 45.455 0.00 0.00 36.61 4.06
15 16 2.086869 AGCTTGCTGTTGAATACGCAT 58.913 42.857 0.00 0.00 36.61 4.73
16 17 1.197492 CAGCTTGCTGTTGAATACGCA 59.803 47.619 13.89 0.00 35.52 5.24
17 18 1.887320 CAGCTTGCTGTTGAATACGC 58.113 50.000 13.89 0.00 0.00 4.42
18 19 1.466360 GGCAGCTTGCTGTTGAATACG 60.466 52.381 21.55 0.00 44.28 3.06
19 20 1.135286 GGGCAGCTTGCTGTTGAATAC 60.135 52.381 21.55 5.28 44.28 1.89
20 21 1.176527 GGGCAGCTTGCTGTTGAATA 58.823 50.000 21.55 0.00 44.28 1.75
21 22 1.538687 GGGGCAGCTTGCTGTTGAAT 61.539 55.000 21.55 0.00 44.28 2.57
22 23 2.202395 GGGGCAGCTTGCTGTTGAA 61.202 57.895 21.55 0.00 44.28 2.69
23 24 2.598394 GGGGCAGCTTGCTGTTGA 60.598 61.111 21.55 0.00 44.28 3.18
24 25 2.913578 TGGGGCAGCTTGCTGTTG 60.914 61.111 21.55 0.61 44.28 3.33
25 26 2.914097 GTGGGGCAGCTTGCTGTT 60.914 61.111 21.55 0.00 44.28 3.16
26 27 4.208403 TGTGGGGCAGCTTGCTGT 62.208 61.111 21.55 0.00 44.28 4.40
27 28 3.677648 GTGTGGGGCAGCTTGCTG 61.678 66.667 17.34 17.34 44.28 4.41
28 29 4.982701 GGTGTGGGGCAGCTTGCT 62.983 66.667 7.85 0.00 44.28 3.91
30 31 4.641645 TCGGTGTGGGGCAGCTTG 62.642 66.667 0.00 0.00 42.99 4.01
31 32 4.643387 GTCGGTGTGGGGCAGCTT 62.643 66.667 0.00 0.00 42.99 3.74
55 56 1.672030 TGTTCCTGATGGCGTGCAG 60.672 57.895 0.00 0.00 0.00 4.41
56 57 1.965930 GTGTTCCTGATGGCGTGCA 60.966 57.895 0.00 0.00 0.00 4.57
57 58 2.870372 GTGTTCCTGATGGCGTGC 59.130 61.111 0.00 0.00 0.00 5.34
58 59 3.027170 GCGTGTTCCTGATGGCGTG 62.027 63.158 0.00 0.00 0.00 5.34
59 60 2.731691 AAGCGTGTTCCTGATGGCGT 62.732 55.000 0.00 0.00 0.00 5.68
60 61 2.034879 AAGCGTGTTCCTGATGGCG 61.035 57.895 0.00 0.00 0.00 5.69
61 62 0.955428 TCAAGCGTGTTCCTGATGGC 60.955 55.000 0.00 0.00 0.00 4.40
62 63 1.081892 CTCAAGCGTGTTCCTGATGG 58.918 55.000 0.00 0.00 0.00 3.51
63 64 0.445436 GCTCAAGCGTGTTCCTGATG 59.555 55.000 0.00 0.00 0.00 3.07
64 65 2.846371 GCTCAAGCGTGTTCCTGAT 58.154 52.632 0.00 0.00 0.00 2.90
65 66 4.361253 GCTCAAGCGTGTTCCTGA 57.639 55.556 0.00 0.00 0.00 3.86
75 76 0.673022 CCAGTCTCCACAGCTCAAGC 60.673 60.000 0.00 0.00 42.49 4.01
76 77 0.673022 GCCAGTCTCCACAGCTCAAG 60.673 60.000 0.00 0.00 0.00 3.02
77 78 1.372683 GCCAGTCTCCACAGCTCAA 59.627 57.895 0.00 0.00 0.00 3.02
78 79 2.935740 CGCCAGTCTCCACAGCTCA 61.936 63.158 0.00 0.00 0.00 4.26
79 80 2.125753 CGCCAGTCTCCACAGCTC 60.126 66.667 0.00 0.00 0.00 4.09
80 81 3.699894 CCGCCAGTCTCCACAGCT 61.700 66.667 0.00 0.00 0.00 4.24
81 82 4.767255 CCCGCCAGTCTCCACAGC 62.767 72.222 0.00 0.00 0.00 4.40
82 83 2.997315 TCCCGCCAGTCTCCACAG 60.997 66.667 0.00 0.00 0.00 3.66
83 84 2.997315 CTCCCGCCAGTCTCCACA 60.997 66.667 0.00 0.00 0.00 4.17
84 85 4.459089 GCTCCCGCCAGTCTCCAC 62.459 72.222 0.00 0.00 0.00 4.02
86 87 3.672295 CTTGCTCCCGCCAGTCTCC 62.672 68.421 0.00 0.00 34.43 3.71
87 88 1.965754 ATCTTGCTCCCGCCAGTCTC 61.966 60.000 0.00 0.00 34.43 3.36
88 89 1.992277 ATCTTGCTCCCGCCAGTCT 60.992 57.895 0.00 0.00 34.43 3.24
89 90 1.817099 CATCTTGCTCCCGCCAGTC 60.817 63.158 0.00 0.00 34.43 3.51
90 91 2.270205 CATCTTGCTCCCGCCAGT 59.730 61.111 0.00 0.00 34.43 4.00
91 92 3.207669 GCATCTTGCTCCCGCCAG 61.208 66.667 0.00 0.00 40.96 4.85
92 93 4.802051 GGCATCTTGCTCCCGCCA 62.802 66.667 0.00 0.00 44.28 5.69
93 94 3.106986 TAGGCATCTTGCTCCCGCC 62.107 63.158 0.00 0.00 44.28 6.13
94 95 1.596477 CTAGGCATCTTGCTCCCGC 60.596 63.158 0.00 0.00 44.28 6.13
95 96 0.033228 CTCTAGGCATCTTGCTCCCG 59.967 60.000 0.00 0.00 44.28 5.14
96 97 0.250252 GCTCTAGGCATCTTGCTCCC 60.250 60.000 0.00 0.00 44.28 4.30
97 98 0.250252 GGCTCTAGGCATCTTGCTCC 60.250 60.000 0.00 0.00 44.28 4.70
98 99 0.250252 GGGCTCTAGGCATCTTGCTC 60.250 60.000 5.85 0.00 44.28 4.26
99 100 1.704007 GGGGCTCTAGGCATCTTGCT 61.704 60.000 5.85 0.00 44.28 3.91
100 101 1.228094 GGGGCTCTAGGCATCTTGC 60.228 63.158 5.85 0.00 44.08 4.01
101 102 1.059006 AGGGGGCTCTAGGCATCTTG 61.059 60.000 5.85 0.00 44.01 3.02
102 103 0.327964 AAGGGGGCTCTAGGCATCTT 60.328 55.000 5.85 5.52 44.01 2.40
103 104 0.327964 AAAGGGGGCTCTAGGCATCT 60.328 55.000 5.85 0.00 44.01 2.90
104 105 0.553333 AAAAGGGGGCTCTAGGCATC 59.447 55.000 5.85 0.00 44.01 3.91
105 106 0.259938 CAAAAGGGGGCTCTAGGCAT 59.740 55.000 5.85 0.00 44.01 4.40
106 107 1.691219 CAAAAGGGGGCTCTAGGCA 59.309 57.895 5.85 0.00 44.01 4.75
107 108 1.076705 CCAAAAGGGGGCTCTAGGC 60.077 63.158 0.00 0.00 40.90 3.93
118 119 2.169769 TCGCTACATACTCCCCAAAAGG 59.830 50.000 0.00 0.00 0.00 3.11
119 120 3.132289 TCTCGCTACATACTCCCCAAAAG 59.868 47.826 0.00 0.00 0.00 2.27
120 121 3.101437 TCTCGCTACATACTCCCCAAAA 58.899 45.455 0.00 0.00 0.00 2.44
121 122 2.693591 CTCTCGCTACATACTCCCCAAA 59.306 50.000 0.00 0.00 0.00 3.28
122 123 2.092049 TCTCTCGCTACATACTCCCCAA 60.092 50.000 0.00 0.00 0.00 4.12
123 124 1.493446 TCTCTCGCTACATACTCCCCA 59.507 52.381 0.00 0.00 0.00 4.96
124 125 2.156098 CTCTCTCGCTACATACTCCCC 58.844 57.143 0.00 0.00 0.00 4.81
125 126 2.853705 ACTCTCTCGCTACATACTCCC 58.146 52.381 0.00 0.00 0.00 4.30
126 127 3.434299 GCTACTCTCTCGCTACATACTCC 59.566 52.174 0.00 0.00 0.00 3.85
127 128 3.434299 GGCTACTCTCTCGCTACATACTC 59.566 52.174 0.00 0.00 0.00 2.59
128 129 3.404899 GGCTACTCTCTCGCTACATACT 58.595 50.000 0.00 0.00 0.00 2.12
129 130 2.485038 GGGCTACTCTCTCGCTACATAC 59.515 54.545 0.00 0.00 0.00 2.39
130 131 2.372504 AGGGCTACTCTCTCGCTACATA 59.627 50.000 0.00 0.00 0.00 2.29
131 132 1.144093 AGGGCTACTCTCTCGCTACAT 59.856 52.381 0.00 0.00 0.00 2.29
132 133 0.547075 AGGGCTACTCTCTCGCTACA 59.453 55.000 0.00 0.00 0.00 2.74
133 134 2.419667 CTAGGGCTACTCTCTCGCTAC 58.580 57.143 0.00 0.00 0.00 3.58
134 135 1.348366 CCTAGGGCTACTCTCTCGCTA 59.652 57.143 0.00 0.00 0.00 4.26
135 136 0.109723 CCTAGGGCTACTCTCTCGCT 59.890 60.000 0.00 0.00 0.00 4.93
136 137 0.108963 TCCTAGGGCTACTCTCTCGC 59.891 60.000 9.46 0.00 0.00 5.03
137 138 2.871096 ATCCTAGGGCTACTCTCTCG 57.129 55.000 9.46 0.00 0.00 4.04
138 139 4.401202 GCATTATCCTAGGGCTACTCTCTC 59.599 50.000 9.46 0.00 0.00 3.20
139 140 4.045334 AGCATTATCCTAGGGCTACTCTCT 59.955 45.833 9.46 0.00 32.09 3.10
140 141 4.159506 CAGCATTATCCTAGGGCTACTCTC 59.840 50.000 9.46 0.00 32.71 3.20
141 142 4.093011 CAGCATTATCCTAGGGCTACTCT 58.907 47.826 9.46 0.00 32.71 3.24
142 143 3.196685 CCAGCATTATCCTAGGGCTACTC 59.803 52.174 9.46 0.00 32.71 2.59
143 144 3.177228 CCAGCATTATCCTAGGGCTACT 58.823 50.000 9.46 0.00 32.71 2.57
144 145 2.355209 GCCAGCATTATCCTAGGGCTAC 60.355 54.545 9.46 1.55 37.00 3.58
145 146 1.909302 GCCAGCATTATCCTAGGGCTA 59.091 52.381 9.46 0.00 37.00 3.93
146 147 0.695347 GCCAGCATTATCCTAGGGCT 59.305 55.000 9.46 6.27 37.00 5.19
147 148 0.322906 GGCCAGCATTATCCTAGGGC 60.323 60.000 9.46 3.65 39.18 5.19
148 149 1.067295 TGGCCAGCATTATCCTAGGG 58.933 55.000 9.46 0.00 0.00 3.53
149 150 1.271597 GGTGGCCAGCATTATCCTAGG 60.272 57.143 29.70 0.82 0.00 3.02
150 151 1.701847 AGGTGGCCAGCATTATCCTAG 59.298 52.381 34.87 0.00 0.00 3.02
151 152 1.819753 AGGTGGCCAGCATTATCCTA 58.180 50.000 34.87 0.00 0.00 2.94
152 153 1.819753 TAGGTGGCCAGCATTATCCT 58.180 50.000 34.87 23.56 0.00 3.24
153 154 2.887151 ATAGGTGGCCAGCATTATCC 57.113 50.000 34.87 17.60 0.00 2.59
154 155 5.365021 AGATATAGGTGGCCAGCATTATC 57.635 43.478 34.87 32.24 0.00 1.75
155 156 5.490357 AGAAGATATAGGTGGCCAGCATTAT 59.510 40.000 34.87 27.76 0.00 1.28
156 157 4.846367 AGAAGATATAGGTGGCCAGCATTA 59.154 41.667 34.87 24.73 0.00 1.90
157 158 3.654806 AGAAGATATAGGTGGCCAGCATT 59.345 43.478 34.87 23.46 0.00 3.56
158 159 3.254960 AGAAGATATAGGTGGCCAGCAT 58.745 45.455 34.87 25.89 0.00 3.79
159 160 2.694397 AGAAGATATAGGTGGCCAGCA 58.306 47.619 34.87 21.47 0.00 4.41
160 161 3.778954 AAGAAGATATAGGTGGCCAGC 57.221 47.619 27.66 27.66 0.00 4.85
161 162 4.752101 CGAAAAGAAGATATAGGTGGCCAG 59.248 45.833 5.11 0.00 0.00 4.85
162 163 4.163458 ACGAAAAGAAGATATAGGTGGCCA 59.837 41.667 0.00 0.00 0.00 5.36
163 164 4.704965 ACGAAAAGAAGATATAGGTGGCC 58.295 43.478 0.00 0.00 0.00 5.36
164 165 6.539103 AGAAACGAAAAGAAGATATAGGTGGC 59.461 38.462 0.00 0.00 0.00 5.01
165 166 7.224949 GGAGAAACGAAAAGAAGATATAGGTGG 59.775 40.741 0.00 0.00 0.00 4.61
166 167 7.982354 AGGAGAAACGAAAAGAAGATATAGGTG 59.018 37.037 0.00 0.00 0.00 4.00
167 168 8.080363 AGGAGAAACGAAAAGAAGATATAGGT 57.920 34.615 0.00 0.00 0.00 3.08
168 169 8.950208 AAGGAGAAACGAAAAGAAGATATAGG 57.050 34.615 0.00 0.00 0.00 2.57
171 172 9.067986 ACAAAAGGAGAAACGAAAAGAAGATAT 57.932 29.630 0.00 0.00 0.00 1.63
172 173 8.446599 ACAAAAGGAGAAACGAAAAGAAGATA 57.553 30.769 0.00 0.00 0.00 1.98
173 174 7.334844 ACAAAAGGAGAAACGAAAAGAAGAT 57.665 32.000 0.00 0.00 0.00 2.40
174 175 6.753107 ACAAAAGGAGAAACGAAAAGAAGA 57.247 33.333 0.00 0.00 0.00 2.87
175 176 6.910972 GGTACAAAAGGAGAAACGAAAAGAAG 59.089 38.462 0.00 0.00 0.00 2.85
176 177 6.183360 GGGTACAAAAGGAGAAACGAAAAGAA 60.183 38.462 0.00 0.00 0.00 2.52
177 178 5.297527 GGGTACAAAAGGAGAAACGAAAAGA 59.702 40.000 0.00 0.00 0.00 2.52
178 179 5.298527 AGGGTACAAAAGGAGAAACGAAAAG 59.701 40.000 0.00 0.00 0.00 2.27
179 180 5.195185 AGGGTACAAAAGGAGAAACGAAAA 58.805 37.500 0.00 0.00 0.00 2.29
180 181 4.784177 AGGGTACAAAAGGAGAAACGAAA 58.216 39.130 0.00 0.00 0.00 3.46
181 182 4.426736 AGGGTACAAAAGGAGAAACGAA 57.573 40.909 0.00 0.00 0.00 3.85
182 183 4.131596 CAAGGGTACAAAAGGAGAAACGA 58.868 43.478 0.00 0.00 0.00 3.85
183 184 4.131596 TCAAGGGTACAAAAGGAGAAACG 58.868 43.478 0.00 0.00 0.00 3.60
184 185 5.106673 CGATCAAGGGTACAAAAGGAGAAAC 60.107 44.000 0.00 0.00 0.00 2.78
185 186 5.001232 CGATCAAGGGTACAAAAGGAGAAA 58.999 41.667 0.00 0.00 0.00 2.52
186 187 4.575885 CGATCAAGGGTACAAAAGGAGAA 58.424 43.478 0.00 0.00 0.00 2.87
187 188 3.618997 GCGATCAAGGGTACAAAAGGAGA 60.619 47.826 0.00 0.00 0.00 3.71
188 189 2.678336 GCGATCAAGGGTACAAAAGGAG 59.322 50.000 0.00 0.00 0.00 3.69
189 190 2.304761 AGCGATCAAGGGTACAAAAGGA 59.695 45.455 0.00 0.00 0.00 3.36
190 191 2.711542 AGCGATCAAGGGTACAAAAGG 58.288 47.619 0.00 0.00 0.00 3.11
191 192 3.751175 TCAAGCGATCAAGGGTACAAAAG 59.249 43.478 0.00 0.00 0.00 2.27
192 193 3.745799 TCAAGCGATCAAGGGTACAAAA 58.254 40.909 0.00 0.00 0.00 2.44
193 194 3.410631 TCAAGCGATCAAGGGTACAAA 57.589 42.857 0.00 0.00 0.00 2.83
194 195 3.531538 GATCAAGCGATCAAGGGTACAA 58.468 45.455 0.00 0.00 46.33 2.41
195 196 3.179443 GATCAAGCGATCAAGGGTACA 57.821 47.619 0.00 0.00 46.33 2.90
205 206 0.620556 ACAAGGGGTGATCAAGCGAT 59.379 50.000 0.00 0.00 33.31 4.58
206 207 0.400213 AACAAGGGGTGATCAAGCGA 59.600 50.000 0.00 0.00 0.00 4.93
207 208 0.804989 GAACAAGGGGTGATCAAGCG 59.195 55.000 0.00 0.00 0.00 4.68
208 209 2.087646 GAGAACAAGGGGTGATCAAGC 58.912 52.381 0.00 0.00 31.54 4.01
209 210 2.619074 GGGAGAACAAGGGGTGATCAAG 60.619 54.545 0.00 0.00 31.54 3.02
210 211 1.354368 GGGAGAACAAGGGGTGATCAA 59.646 52.381 0.00 0.00 31.54 2.57
211 212 0.991920 GGGAGAACAAGGGGTGATCA 59.008 55.000 0.00 0.00 31.54 2.92
212 213 0.991920 TGGGAGAACAAGGGGTGATC 59.008 55.000 0.00 0.00 0.00 2.92
213 214 1.686236 ATGGGAGAACAAGGGGTGAT 58.314 50.000 0.00 0.00 0.00 3.06
214 215 1.075374 CAATGGGAGAACAAGGGGTGA 59.925 52.381 0.00 0.00 0.00 4.02
215 216 1.549203 CAATGGGAGAACAAGGGGTG 58.451 55.000 0.00 0.00 0.00 4.61
216 217 0.251787 GCAATGGGAGAACAAGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
217 218 0.040204 AGCAATGGGAGAACAAGGGG 59.960 55.000 0.00 0.00 0.00 4.79
218 219 1.928868 AAGCAATGGGAGAACAAGGG 58.071 50.000 0.00 0.00 0.00 3.95
219 220 3.160269 AGAAAGCAATGGGAGAACAAGG 58.840 45.455 0.00 0.00 0.00 3.61
220 221 3.192212 GGAGAAAGCAATGGGAGAACAAG 59.808 47.826 0.00 0.00 0.00 3.16
221 222 3.157087 GGAGAAAGCAATGGGAGAACAA 58.843 45.455 0.00 0.00 0.00 2.83
222 223 2.376518 AGGAGAAAGCAATGGGAGAACA 59.623 45.455 0.00 0.00 0.00 3.18
223 224 3.078891 AGGAGAAAGCAATGGGAGAAC 57.921 47.619 0.00 0.00 0.00 3.01
224 225 4.927267 TTAGGAGAAAGCAATGGGAGAA 57.073 40.909 0.00 0.00 0.00 2.87
225 226 4.927267 TTTAGGAGAAAGCAATGGGAGA 57.073 40.909 0.00 0.00 0.00 3.71
226 227 5.195940 TGATTTAGGAGAAAGCAATGGGAG 58.804 41.667 0.00 0.00 0.00 4.30
227 228 5.191727 TGATTTAGGAGAAAGCAATGGGA 57.808 39.130 0.00 0.00 0.00 4.37
228 229 5.920193 TTGATTTAGGAGAAAGCAATGGG 57.080 39.130 0.00 0.00 31.56 4.00
231 232 7.263496 GCTTCATTGATTTAGGAGAAAGCAAT 58.737 34.615 7.50 7.50 44.16 3.56
232 233 6.350445 GGCTTCATTGATTTAGGAGAAAGCAA 60.350 38.462 3.51 3.51 39.42 3.91
233 234 5.126061 GGCTTCATTGATTTAGGAGAAAGCA 59.874 40.000 0.00 0.00 0.00 3.91
234 235 5.586339 GGCTTCATTGATTTAGGAGAAAGC 58.414 41.667 0.00 0.00 0.00 3.51
235 236 5.220931 CCGGCTTCATTGATTTAGGAGAAAG 60.221 44.000 0.00 0.00 0.00 2.62
236 237 4.640201 CCGGCTTCATTGATTTAGGAGAAA 59.360 41.667 0.00 0.00 0.00 2.52
237 238 4.080582 TCCGGCTTCATTGATTTAGGAGAA 60.081 41.667 0.00 0.00 0.00 2.87
238 239 3.454447 TCCGGCTTCATTGATTTAGGAGA 59.546 43.478 0.00 0.00 0.00 3.71
239 240 3.808728 TCCGGCTTCATTGATTTAGGAG 58.191 45.455 0.00 0.00 0.00 3.69
240 241 3.924114 TCCGGCTTCATTGATTTAGGA 57.076 42.857 0.00 0.00 0.00 2.94
241 242 4.440112 GGTTTCCGGCTTCATTGATTTAGG 60.440 45.833 0.00 0.00 0.00 2.69
242 243 4.440112 GGGTTTCCGGCTTCATTGATTTAG 60.440 45.833 0.00 0.00 0.00 1.85
243 244 3.445805 GGGTTTCCGGCTTCATTGATTTA 59.554 43.478 0.00 0.00 0.00 1.40
244 245 2.233676 GGGTTTCCGGCTTCATTGATTT 59.766 45.455 0.00 0.00 0.00 2.17
245 246 1.824852 GGGTTTCCGGCTTCATTGATT 59.175 47.619 0.00 0.00 0.00 2.57
246 247 1.474330 GGGTTTCCGGCTTCATTGAT 58.526 50.000 0.00 0.00 0.00 2.57
247 248 0.610785 GGGGTTTCCGGCTTCATTGA 60.611 55.000 0.00 0.00 0.00 2.57
248 249 1.890174 GGGGTTTCCGGCTTCATTG 59.110 57.895 0.00 0.00 0.00 2.82
249 250 4.434483 GGGGTTTCCGGCTTCATT 57.566 55.556 0.00 0.00 0.00 2.57
258 259 2.209690 TTGAAAGATCCGGGGTTTCC 57.790 50.000 16.58 0.00 30.51 3.13
259 260 4.594123 TTTTTGAAAGATCCGGGGTTTC 57.406 40.909 0.00 9.25 0.00 2.78
278 279 2.296073 TGGACGGTTAGGGCATTTTT 57.704 45.000 0.00 0.00 0.00 1.94
279 280 2.296073 TTGGACGGTTAGGGCATTTT 57.704 45.000 0.00 0.00 0.00 1.82
280 281 2.296073 TTTGGACGGTTAGGGCATTT 57.704 45.000 0.00 0.00 0.00 2.32
281 282 2.296073 TTTTGGACGGTTAGGGCATT 57.704 45.000 0.00 0.00 0.00 3.56
282 283 2.525105 ATTTTGGACGGTTAGGGCAT 57.475 45.000 0.00 0.00 0.00 4.40
283 284 3.349022 CTTATTTTGGACGGTTAGGGCA 58.651 45.455 0.00 0.00 0.00 5.36
284 285 2.098607 GCTTATTTTGGACGGTTAGGGC 59.901 50.000 0.00 0.00 0.00 5.19
285 286 3.128068 GTGCTTATTTTGGACGGTTAGGG 59.872 47.826 0.00 0.00 0.00 3.53
286 287 3.754323 TGTGCTTATTTTGGACGGTTAGG 59.246 43.478 0.00 0.00 0.00 2.69
287 288 4.454504 ACTGTGCTTATTTTGGACGGTTAG 59.545 41.667 0.00 0.00 41.44 2.34
288 289 4.391155 ACTGTGCTTATTTTGGACGGTTA 58.609 39.130 0.00 0.00 41.44 2.85
289 290 3.219281 ACTGTGCTTATTTTGGACGGTT 58.781 40.909 0.00 0.00 41.44 4.44
290 291 2.858745 ACTGTGCTTATTTTGGACGGT 58.141 42.857 0.00 0.00 39.85 4.83
291 292 4.000988 ACTACTGTGCTTATTTTGGACGG 58.999 43.478 0.00 0.00 37.98 4.79
292 293 4.957971 CACTACTGTGCTTATTTTGGACG 58.042 43.478 0.00 0.00 37.38 4.79
306 307 5.887035 GGAGGAAGTACATCTACACTACTGT 59.113 44.000 0.00 0.00 0.00 3.55
307 308 5.007823 CGGAGGAAGTACATCTACACTACTG 59.992 48.000 0.00 0.00 0.00 2.74
308 309 5.124645 CGGAGGAAGTACATCTACACTACT 58.875 45.833 0.00 0.00 0.00 2.57
309 310 4.880696 ACGGAGGAAGTACATCTACACTAC 59.119 45.833 0.00 0.00 0.00 2.73
310 311 5.108187 ACGGAGGAAGTACATCTACACTA 57.892 43.478 0.00 0.00 0.00 2.74
311 312 3.946558 GACGGAGGAAGTACATCTACACT 59.053 47.826 0.00 0.00 0.00 3.55
312 313 3.066481 GGACGGAGGAAGTACATCTACAC 59.934 52.174 0.00 0.00 0.00 2.90
313 314 3.285484 GGACGGAGGAAGTACATCTACA 58.715 50.000 0.00 0.00 0.00 2.74
314 315 2.622470 GGGACGGAGGAAGTACATCTAC 59.378 54.545 0.00 0.00 0.00 2.59
315 316 2.242965 TGGGACGGAGGAAGTACATCTA 59.757 50.000 0.00 0.00 0.00 1.98
316 317 1.006758 TGGGACGGAGGAAGTACATCT 59.993 52.381 0.00 0.00 0.00 2.90
317 318 1.481871 TGGGACGGAGGAAGTACATC 58.518 55.000 0.00 0.00 0.00 3.06
318 319 2.176247 ATGGGACGGAGGAAGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
319 320 2.832643 TATGGGACGGAGGAAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
320 321 5.997384 ATATTATGGGACGGAGGAAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
321 322 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
322 323 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
323 324 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
324 325 6.294899 CGTTCTTATATTATGGGACGGAGGAA 60.295 42.308 0.00 0.00 0.00 3.36
325 326 5.184479 CGTTCTTATATTATGGGACGGAGGA 59.816 44.000 0.00 0.00 0.00 3.71
326 327 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
327 328 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
328 329 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
329 330 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
357 358 8.784043 AGAACGTTTTTCAAGCTATGTTAGATT 58.216 29.630 0.46 0.00 34.19 2.40
358 359 8.324163 AGAACGTTTTTCAAGCTATGTTAGAT 57.676 30.769 0.46 0.00 0.00 1.98
359 360 7.724305 AGAACGTTTTTCAAGCTATGTTAGA 57.276 32.000 0.46 0.00 0.00 2.10
368 369 9.233232 CCCATAATATAAGAACGTTTTTCAAGC 57.767 33.333 7.42 0.00 0.00 4.01
371 372 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
372 373 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
373 374 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
374 375 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
375 376 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
376 377 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
377 378 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
378 379 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
379 380 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
380 381 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
381 382 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
382 383 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
383 384 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
384 385 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
385 386 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
386 387 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
387 388 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
388 389 2.969950 CAATACTCCCTCCGTCCCATAA 59.030 50.000 0.00 0.00 0.00 1.90
389 390 2.178325 TCAATACTCCCTCCGTCCCATA 59.822 50.000 0.00 0.00 0.00 2.74
390 391 1.062428 TCAATACTCCCTCCGTCCCAT 60.062 52.381 0.00 0.00 0.00 4.00
391 392 0.337082 TCAATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
392 393 1.718280 ATCAATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
393 394 3.840124 AAATCAATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
394 395 5.786264 TCTAAATCAATACTCCCTCCGTC 57.214 43.478 0.00 0.00 0.00 4.79
395 396 6.099845 ACAATCTAAATCAATACTCCCTCCGT 59.900 38.462 0.00 0.00 0.00 4.69
396 397 6.425114 CACAATCTAAATCAATACTCCCTCCG 59.575 42.308 0.00 0.00 0.00 4.63
397 398 7.509546 TCACAATCTAAATCAATACTCCCTCC 58.490 38.462 0.00 0.00 0.00 4.30
398 399 8.964476 TTCACAATCTAAATCAATACTCCCTC 57.036 34.615 0.00 0.00 0.00 4.30
399 400 7.500559 GCTTCACAATCTAAATCAATACTCCCT 59.499 37.037 0.00 0.00 0.00 4.20
400 401 7.283127 TGCTTCACAATCTAAATCAATACTCCC 59.717 37.037 0.00 0.00 0.00 4.30
401 402 8.213518 TGCTTCACAATCTAAATCAATACTCC 57.786 34.615 0.00 0.00 0.00 3.85
402 403 8.341173 CCTGCTTCACAATCTAAATCAATACTC 58.659 37.037 0.00 0.00 0.00 2.59
403 404 8.049117 TCCTGCTTCACAATCTAAATCAATACT 58.951 33.333 0.00 0.00 0.00 2.12
410 411 5.189180 GGTCTCCTGCTTCACAATCTAAAT 58.811 41.667 0.00 0.00 0.00 1.40
581 605 2.205152 AGCAGCCAGCCTTGGTTTG 61.205 57.895 0.00 0.00 46.80 2.93
984 1046 2.008543 GCCATCGATGCTGTGTCTTGA 61.009 52.381 20.25 0.00 0.00 3.02
993 1065 4.529219 TTCGCCGCCATCGATGCT 62.529 61.111 20.25 0.00 38.10 3.79
1433 1563 0.321122 CGGAGGCAATATCAGAGGCC 60.321 60.000 0.00 0.00 46.77 5.19
1585 1715 2.998949 GAGGCTTGGAATCCGGGT 59.001 61.111 0.00 0.00 0.00 5.28
1591 1721 0.460987 CGAAGAGCGAGGCTTGGAAT 60.461 55.000 3.44 0.00 44.57 3.01
1599 1729 2.202676 GCAGACCGAAGAGCGAGG 60.203 66.667 0.00 0.00 44.57 4.63
1603 1733 2.817396 GCAGGCAGACCGAAGAGC 60.817 66.667 0.00 0.00 42.76 4.09
1604 1734 2.125350 GGCAGGCAGACCGAAGAG 60.125 66.667 0.00 0.00 42.76 2.85
1605 1735 2.604686 AGGCAGGCAGACCGAAGA 60.605 61.111 0.00 0.00 42.76 2.87
1606 1736 2.435586 CAGGCAGGCAGACCGAAG 60.436 66.667 0.00 0.00 42.76 3.79
1607 1737 4.704833 GCAGGCAGGCAGACCGAA 62.705 66.667 0.00 0.00 42.76 4.30
1710 1840 0.535780 TTCTTCACAGCAGTGGCAGG 60.536 55.000 9.58 0.00 45.91 4.85
1716 1846 3.306641 GGAGTCATCTTCTTCACAGCAGT 60.307 47.826 0.00 0.00 0.00 4.40
1767 1906 0.604780 GAACCTTGCAGCTGAGCTCA 60.605 55.000 20.43 17.19 36.40 4.26
1820 1982 2.250924 CCCAAGGAATTGGTTGCTTCT 58.749 47.619 6.29 0.00 43.13 2.85
1845 2007 0.107361 AAGGGCGTAATACCACTGGC 60.107 55.000 0.00 0.00 0.00 4.85
1934 2103 4.631813 CACTAGACATCTTGGTGGTTAAGC 59.368 45.833 0.00 0.00 0.00 3.09
1950 2119 5.669164 AAGGGATTCAGAGAACACTAGAC 57.331 43.478 0.00 0.00 0.00 2.59
1994 2163 0.530288 GGAGACTCTGCTGACACTCC 59.470 60.000 18.45 18.45 34.66 3.85
2151 2323 4.458989 GGAATTGCAGTACATGAGTTCCAA 59.541 41.667 0.00 0.00 36.25 3.53
2153 2325 3.063997 CGGAATTGCAGTACATGAGTTCC 59.936 47.826 0.00 2.71 34.47 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.