Multiple sequence alignment - TraesCS2A01G140400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G140400 chr2A 100.000 6614 0 0 1 6614 85594557 85601170 0.000000e+00 12214.0
1 TraesCS2A01G140400 chr2A 92.007 563 43 2 4232 4794 84151811 84151251 0.000000e+00 789.0
2 TraesCS2A01G140400 chr2A 76.805 914 126 43 2260 3130 84551510 84550640 1.020000e-117 435.0
3 TraesCS2A01G140400 chr2A 85.575 409 39 9 5528 5930 84150985 84150591 1.720000e-110 411.0
4 TraesCS2A01G140400 chr2A 79.130 575 70 19 1494 2059 84552227 84551694 1.060000e-92 351.0
5 TraesCS2A01G140400 chr2A 89.615 260 26 1 3171 3429 84550565 84550306 4.940000e-86 329.0
6 TraesCS2A01G140400 chr2A 93.229 192 12 1 3926 4116 84549782 84549591 1.400000e-71 281.0
7 TraesCS2A01G140400 chr2A 90.449 178 13 3 5340 5516 84151255 84151081 1.430000e-56 231.0
8 TraesCS2A01G140400 chr2A 96.774 31 1 0 6269 6299 84232389 84232359 1.200000e-02 52.8
9 TraesCS2A01G140400 chr2B 95.505 2892 75 22 3466 6311 136622007 136624889 0.000000e+00 4569.0
10 TraesCS2A01G140400 chr2B 96.463 2516 76 8 921 3431 136619513 136622020 0.000000e+00 4141.0
11 TraesCS2A01G140400 chr2B 77.476 1252 162 61 2254 3430 135690828 135689622 2.010000e-179 640.0
12 TraesCS2A01G140400 chr2B 90.710 366 33 1 3741 4105 135689206 135688841 2.770000e-133 486.0
13 TraesCS2A01G140400 chr2B 94.332 247 12 2 6369 6614 136624901 136625146 1.740000e-100 377.0
14 TraesCS2A01G140400 chr2B 94.737 38 1 1 6266 6302 137610660 137610697 2.580000e-04 58.4
15 TraesCS2A01G140400 chr2D 96.245 2450 70 8 3479 5926 84762879 84765308 0.000000e+00 3995.0
16 TraesCS2A01G140400 chr2D 89.581 2601 161 36 920 3431 84760297 84762876 0.000000e+00 3201.0
17 TraesCS2A01G140400 chr2D 87.232 1723 161 23 4229 5934 84921112 84922792 0.000000e+00 1908.0
18 TraesCS2A01G140400 chr2D 88.875 800 54 18 8 784 84759376 84760163 0.000000e+00 952.0
19 TraesCS2A01G140400 chr2D 87.863 379 22 6 3741 4116 83820145 83819788 2.200000e-114 424.0
20 TraesCS2A01G140400 chr2D 86.973 261 21 6 3171 3429 83821088 83820839 1.400000e-71 281.0
21 TraesCS2A01G140400 chr2D 79.947 374 46 12 1688 2059 83821768 83821422 1.420000e-61 248.0
22 TraesCS2A01G140400 chr2D 80.755 265 38 10 3479 3739 83820836 83820581 1.880000e-45 195.0
23 TraesCS2A01G140400 chr2D 94.737 38 1 1 6266 6302 85391491 85391528 2.580000e-04 58.4
24 TraesCS2A01G140400 chr4D 84.805 2027 275 23 3739 5741 450327653 450329670 0.000000e+00 2006.0
25 TraesCS2A01G140400 chr4D 82.609 1219 165 25 2254 3432 450325397 450326608 0.000000e+00 1033.0
26 TraesCS2A01G140400 chr4D 78.229 1231 156 44 982 2182 450324124 450325272 0.000000e+00 686.0
27 TraesCS2A01G140400 chr4A 84.403 2026 284 22 3739 5741 16251723 16249707 0.000000e+00 1962.0
28 TraesCS2A01G140400 chr4A 82.228 1221 164 34 2254 3431 16253298 16252088 0.000000e+00 1003.0
29 TraesCS2A01G140400 chr4A 81.258 795 102 15 982 1774 16254569 16253820 3.410000e-167 599.0
30 TraesCS2A01G140400 chr4A 94.565 92 5 0 5932 6023 492156953 492157044 6.910000e-30 143.0
31 TraesCS2A01G140400 chr4B 85.153 1859 250 13 3739 5587 563624163 563626005 0.000000e+00 1881.0
32 TraesCS2A01G140400 chr4B 82.445 1219 162 31 2254 3431 563622268 563623475 0.000000e+00 1018.0
33 TraesCS2A01G140400 chr4B 80.633 790 107 16 982 1768 563620994 563621740 2.680000e-158 569.0
34 TraesCS2A01G140400 chr4B 91.071 56 5 0 869 924 86142240 86142185 7.110000e-10 76.8
35 TraesCS2A01G140400 chr4B 100.000 38 0 0 5932 5969 71772835 71772872 3.310000e-08 71.3
36 TraesCS2A01G140400 chr4B 97.368 38 1 0 5932 5969 71834009 71834046 1.540000e-06 65.8
37 TraesCS2A01G140400 chr7D 96.078 51 2 0 875 925 20064697 20064747 4.250000e-12 84.2
38 TraesCS2A01G140400 chr7D 94.545 55 1 2 865 919 270505863 270505915 4.250000e-12 84.2
39 TraesCS2A01G140400 chr5D 94.444 54 3 0 866 919 61066408 61066461 4.250000e-12 84.2
40 TraesCS2A01G140400 chr5D 94.340 53 2 1 868 919 461211562 461211510 5.500000e-11 80.5
41 TraesCS2A01G140400 chr5D 92.593 54 2 2 866 919 223299407 223299458 7.110000e-10 76.8
42 TraesCS2A01G140400 chr5B 92.593 54 4 0 866 919 69548119 69548066 1.980000e-10 78.7
43 TraesCS2A01G140400 chr5A 88.889 63 5 2 858 919 436319621 436319682 7.110000e-10 76.8
44 TraesCS2A01G140400 chr1D 91.228 57 3 2 864 919 309094018 309094073 7.110000e-10 76.8
45 TraesCS2A01G140400 chr1D 97.368 38 1 0 5932 5969 40225059 40225022 1.540000e-06 65.8
46 TraesCS2A01G140400 chr6B 90.741 54 5 0 5956 6009 94128310 94128363 9.200000e-09 73.1
47 TraesCS2A01G140400 chr6B 95.349 43 2 0 5927 5969 94012931 94012973 1.190000e-07 69.4
48 TraesCS2A01G140400 chr1B 87.037 54 7 0 5956 6009 57067953 57068006 1.990000e-05 62.1
49 TraesCS2A01G140400 chr7A 94.737 38 1 1 6266 6302 571276461 571276498 2.580000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G140400 chr2A 85594557 85601170 6613 False 12214.000000 12214 100.000000 1 6614 1 chr2A.!!$F1 6613
1 TraesCS2A01G140400 chr2A 84150591 84151811 1220 True 477.000000 789 89.343667 4232 5930 3 chr2A.!!$R2 1698
2 TraesCS2A01G140400 chr2A 84549591 84552227 2636 True 349.000000 435 84.694750 1494 4116 4 chr2A.!!$R3 2622
3 TraesCS2A01G140400 chr2B 136619513 136625146 5633 False 3029.000000 4569 95.433333 921 6614 3 chr2B.!!$F2 5693
4 TraesCS2A01G140400 chr2B 135688841 135690828 1987 True 563.000000 640 84.093000 2254 4105 2 chr2B.!!$R1 1851
5 TraesCS2A01G140400 chr2D 84759376 84765308 5932 False 2716.000000 3995 91.567000 8 5926 3 chr2D.!!$F3 5918
6 TraesCS2A01G140400 chr2D 84921112 84922792 1680 False 1908.000000 1908 87.232000 4229 5934 1 chr2D.!!$F1 1705
7 TraesCS2A01G140400 chr2D 83819788 83821768 1980 True 287.000000 424 83.884500 1688 4116 4 chr2D.!!$R1 2428
8 TraesCS2A01G140400 chr4D 450324124 450329670 5546 False 1241.666667 2006 81.881000 982 5741 3 chr4D.!!$F1 4759
9 TraesCS2A01G140400 chr4A 16249707 16254569 4862 True 1188.000000 1962 82.629667 982 5741 3 chr4A.!!$R1 4759
10 TraesCS2A01G140400 chr4B 563620994 563626005 5011 False 1156.000000 1881 82.743667 982 5587 3 chr4B.!!$F3 4605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 439 0.409484 ATCAGAACTGGGGTTTGGGG 59.591 55.0 1.93 0.0 35.58 4.96 F
524 537 0.894835 TGTTCGTGCTGGCTATCTGA 59.105 50.0 0.00 0.0 0.00 3.27 F
877 899 0.967662 TGGGTCATGGTGTTTGCATG 59.032 50.0 0.00 0.0 0.00 4.06 F
878 900 0.968405 GGGTCATGGTGTTTGCATGT 59.032 50.0 0.00 0.0 0.00 3.21 F
2710 2900 0.727398 GCTGGCAATGTCGAAGGTAC 59.273 55.0 0.00 0.0 0.00 3.34 F
4172 5531 0.242825 TAGCCGGTCTGAACAACTCG 59.757 55.0 1.90 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1902 1.729586 TGGTGAGGCTTGACTAGGTT 58.270 50.000 0.00 0.00 0.00 3.50 R
1859 1931 2.660236 AGTTTCGACAAACGCGATACTC 59.340 45.455 15.93 0.34 43.20 2.59 R
2691 2881 0.727398 GTACCTTCGACATTGCCAGC 59.273 55.000 0.00 0.00 0.00 4.85 R
2729 2919 8.434589 AAACAAATAAAGGGAAGATGGATTGA 57.565 30.769 0.00 0.00 0.00 2.57 R
4477 5840 2.490217 CCACGAGATCGCTCCGTT 59.510 61.111 1.39 0.00 44.43 4.44 R
6041 7544 0.036199 CGGTTGTGTAATTCCCCCGA 60.036 55.000 0.00 0.00 36.12 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.542108 GCACTGCACTTCACTTCTCCT 60.542 52.381 0.00 0.00 0.00 3.69
33 34 2.611722 GCACTTCACTTCTCCTCCACTC 60.612 54.545 0.00 0.00 0.00 3.51
34 35 2.630098 CACTTCACTTCTCCTCCACTCA 59.370 50.000 0.00 0.00 0.00 3.41
71 72 2.866085 GAACAGAGCAGCTCCCGCAT 62.866 60.000 19.40 3.63 39.10 4.73
132 144 1.524482 GCTCCGGCTCTCCAGATTT 59.476 57.895 0.00 0.00 35.22 2.17
160 172 4.896482 GCCTCTTCTCCTCAAGGTATCTTA 59.104 45.833 0.00 0.00 36.34 2.10
191 203 4.114997 GCCATTTCGCACCCACCG 62.115 66.667 0.00 0.00 0.00 4.94
195 207 2.406616 ATTTCGCACCCACCGCATC 61.407 57.895 0.00 0.00 0.00 3.91
213 225 2.933834 CCACCCGTCTCCCCCTTT 60.934 66.667 0.00 0.00 0.00 3.11
234 246 1.528309 CTCCGTGCAGTTTTGGGGT 60.528 57.895 0.00 0.00 0.00 4.95
347 359 4.336280 GCCTTTGTCTGGAAGGTTTCTAT 58.664 43.478 4.95 0.00 44.44 1.98
348 360 4.156739 GCCTTTGTCTGGAAGGTTTCTATG 59.843 45.833 4.95 0.00 44.44 2.23
352 364 7.447238 CCTTTGTCTGGAAGGTTTCTATGTTTA 59.553 37.037 0.00 0.00 39.05 2.01
372 384 1.680338 ATTAGGCCCAAATCGAGTGC 58.320 50.000 0.00 0.00 0.00 4.40
388 400 1.149148 GTGCTTTCTTGAGGTCGGAC 58.851 55.000 0.00 0.00 0.00 4.79
390 402 1.627550 GCTTTCTTGAGGTCGGACGC 61.628 60.000 1.43 0.00 0.00 5.19
394 406 2.670592 TTGAGGTCGGACGCGAGA 60.671 61.111 15.93 6.33 0.00 4.04
397 409 1.800713 GAGGTCGGACGCGAGAAAC 60.801 63.158 15.93 5.45 0.00 2.78
399 411 0.957395 AGGTCGGACGCGAGAAACTA 60.957 55.000 15.93 0.00 0.00 2.24
406 418 3.656618 GGACGCGAGAAACTAAAAATCG 58.343 45.455 15.93 0.00 36.51 3.34
415 427 6.462949 CGAGAAACTAAAAATCGCATCAGAAC 59.537 38.462 0.00 0.00 0.00 3.01
416 428 7.440523 AGAAACTAAAAATCGCATCAGAACT 57.559 32.000 0.00 0.00 0.00 3.01
427 439 0.409484 ATCAGAACTGGGGTTTGGGG 59.591 55.000 1.93 0.00 35.58 4.96
428 440 0.996762 TCAGAACTGGGGTTTGGGGT 60.997 55.000 1.93 0.00 35.58 4.95
473 486 1.236616 TGCGAGCACCAAATCTGTGG 61.237 55.000 0.00 0.00 44.92 4.17
493 506 4.272748 GTGGTCATCTTTAATTACGCTCCC 59.727 45.833 0.00 0.00 0.00 4.30
524 537 0.894835 TGTTCGTGCTGGCTATCTGA 59.105 50.000 0.00 0.00 0.00 3.27
529 542 1.672737 CGTGCTGGCTATCTGACAACA 60.673 52.381 0.00 0.00 30.26 3.33
532 545 2.813754 TGCTGGCTATCTGACAACAAAC 59.186 45.455 0.00 0.00 30.26 2.93
541 554 1.745087 CTGACAACAAACTGTGCTGGT 59.255 47.619 0.00 0.00 0.00 4.00
547 560 5.348164 ACAACAAACTGTGCTGGTTTATTC 58.652 37.500 0.00 0.00 35.48 1.75
549 562 3.957497 ACAAACTGTGCTGGTTTATTCCA 59.043 39.130 0.00 0.00 35.48 3.53
555 568 3.010027 TGTGCTGGTTTATTCCATCTCCA 59.990 43.478 0.00 0.00 36.84 3.86
556 569 3.378427 GTGCTGGTTTATTCCATCTCCAC 59.622 47.826 0.00 0.00 36.84 4.02
557 570 3.266772 TGCTGGTTTATTCCATCTCCACT 59.733 43.478 0.00 0.00 36.84 4.00
559 572 4.706962 GCTGGTTTATTCCATCTCCACTTT 59.293 41.667 0.00 0.00 36.84 2.66
561 574 6.588719 TGGTTTATTCCATCTCCACTTTTG 57.411 37.500 0.00 0.00 31.96 2.44
601 614 1.560505 GGATGGTTGGATTTGGCTGT 58.439 50.000 0.00 0.00 0.00 4.40
602 615 1.205417 GGATGGTTGGATTTGGCTGTG 59.795 52.381 0.00 0.00 0.00 3.66
608 621 1.999648 TGGATTTGGCTGTGAGCTTT 58.000 45.000 0.00 0.00 41.99 3.51
610 623 2.036217 TGGATTTGGCTGTGAGCTTTTG 59.964 45.455 0.00 0.00 41.99 2.44
620 633 1.172180 TGAGCTTTTGGTTCCTGCCG 61.172 55.000 0.00 0.00 0.00 5.69
629 642 1.134220 TGGTTCCTGCCGGTGATTATC 60.134 52.381 1.90 0.00 0.00 1.75
631 644 2.421529 GGTTCCTGCCGGTGATTATCTT 60.422 50.000 1.90 0.00 0.00 2.40
632 645 2.872858 GTTCCTGCCGGTGATTATCTTC 59.127 50.000 1.90 0.00 0.00 2.87
634 647 2.103094 TCCTGCCGGTGATTATCTTCTG 59.897 50.000 1.90 0.00 0.00 3.02
635 648 2.103094 CCTGCCGGTGATTATCTTCTGA 59.897 50.000 1.90 0.00 0.00 3.27
636 649 3.244353 CCTGCCGGTGATTATCTTCTGAT 60.244 47.826 1.90 0.00 36.74 2.90
638 651 4.380531 TGCCGGTGATTATCTTCTGATTC 58.619 43.478 1.90 0.00 34.32 2.52
658 673 6.932400 TGATTCAGAAAATGCATGCTCTTTTT 59.068 30.769 23.31 21.41 0.00 1.94
660 675 4.992319 TCAGAAAATGCATGCTCTTTTTGG 59.008 37.500 23.31 19.29 0.00 3.28
661 676 4.753107 CAGAAAATGCATGCTCTTTTTGGT 59.247 37.500 23.31 13.72 0.00 3.67
662 677 5.927689 CAGAAAATGCATGCTCTTTTTGGTA 59.072 36.000 23.31 2.00 0.00 3.25
663 678 6.592607 CAGAAAATGCATGCTCTTTTTGGTAT 59.407 34.615 23.31 8.49 0.00 2.73
670 692 2.892852 TGCTCTTTTTGGTATGCTTGCT 59.107 40.909 0.00 0.00 0.00 3.91
697 719 8.778358 GCAGACTAAATTAGTGGGATTAGAATG 58.222 37.037 10.76 0.00 39.59 2.67
698 720 9.277783 CAGACTAAATTAGTGGGATTAGAATGG 57.722 37.037 10.76 0.00 39.59 3.16
734 756 7.859598 TGTTGGCATTTAATTTGTGATGAAAC 58.140 30.769 0.00 0.00 0.00 2.78
735 757 7.496920 TGTTGGCATTTAATTTGTGATGAAACA 59.503 29.630 0.00 0.00 31.29 2.83
753 775 7.587037 TGAAACAGTTCATCTTTCCTTGAAT 57.413 32.000 0.00 0.00 38.88 2.57
786 808 5.968528 TTTGTTGTGTTTGTTACCAGAGT 57.031 34.783 0.00 0.00 0.00 3.24
787 809 5.968528 TTGTTGTGTTTGTTACCAGAGTT 57.031 34.783 0.00 0.00 0.00 3.01
788 810 5.968528 TGTTGTGTTTGTTACCAGAGTTT 57.031 34.783 0.00 0.00 0.00 2.66
789 811 6.334102 TGTTGTGTTTGTTACCAGAGTTTT 57.666 33.333 0.00 0.00 0.00 2.43
790 812 6.750148 TGTTGTGTTTGTTACCAGAGTTTTT 58.250 32.000 0.00 0.00 0.00 1.94
822 844 8.215050 TCCTTTTTGAGATAGTTTGTTACCAGA 58.785 33.333 0.00 0.00 0.00 3.86
839 861 2.555199 CAGAGCTAGTTATGCCCACAC 58.445 52.381 0.00 0.00 0.00 3.82
850 872 5.772672 AGTTATGCCCACACTTAAATGTTGA 59.227 36.000 0.00 0.00 0.00 3.18
857 879 5.473162 CCCACACTTAAATGTTGACATCTGA 59.527 40.000 0.00 0.00 35.10 3.27
873 895 2.794103 TCTGATGGGTCATGGTGTTTG 58.206 47.619 0.00 0.00 32.98 2.93
877 899 0.967662 TGGGTCATGGTGTTTGCATG 59.032 50.000 0.00 0.00 0.00 4.06
878 900 0.968405 GGGTCATGGTGTTTGCATGT 59.032 50.000 0.00 0.00 0.00 3.21
879 901 2.166829 GGGTCATGGTGTTTGCATGTA 58.833 47.619 0.00 0.00 0.00 2.29
880 902 2.094752 GGGTCATGGTGTTTGCATGTAC 60.095 50.000 0.00 0.00 0.00 2.90
881 903 2.819608 GGTCATGGTGTTTGCATGTACT 59.180 45.455 0.00 0.00 0.00 2.73
884 906 1.904287 TGGTGTTTGCATGTACTCCC 58.096 50.000 10.74 5.29 0.00 4.30
885 907 1.423541 TGGTGTTTGCATGTACTCCCT 59.576 47.619 10.74 0.00 0.00 4.20
886 908 2.084546 GGTGTTTGCATGTACTCCCTC 58.915 52.381 0.00 0.00 0.00 4.30
887 909 2.084546 GTGTTTGCATGTACTCCCTCC 58.915 52.381 0.00 0.00 0.00 4.30
888 910 1.338674 TGTTTGCATGTACTCCCTCCG 60.339 52.381 0.00 0.00 0.00 4.63
889 911 0.981183 TTTGCATGTACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
891 913 1.855295 TGCATGTACTCCCTCCGTAA 58.145 50.000 0.00 0.00 0.00 3.18
892 914 2.181125 TGCATGTACTCCCTCCGTAAA 58.819 47.619 0.00 0.00 0.00 2.01
895 917 3.118884 GCATGTACTCCCTCCGTAAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
896 918 4.622220 GCATGTACTCCCTCCGTAAAGAAA 60.622 45.833 0.00 0.00 0.00 2.52
897 919 5.671493 CATGTACTCCCTCCGTAAAGAAAT 58.329 41.667 0.00 0.00 0.00 2.17
899 921 7.442656 CATGTACTCCCTCCGTAAAGAAATAT 58.557 38.462 0.00 0.00 0.00 1.28
900 922 8.582437 CATGTACTCCCTCCGTAAAGAAATATA 58.418 37.037 0.00 0.00 0.00 0.86
901 923 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
902 924 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
903 925 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
904 926 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
905 927 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
907 929 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
908 930 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
909 931 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
968 1026 8.950961 CAAACGATATTTTCAATGCACTCTATG 58.049 33.333 0.00 0.00 0.00 2.23
1051 1109 3.871074 GCATGATACTGGGCATGATAGCA 60.871 47.826 0.00 0.00 43.43 3.49
1083 1141 1.138859 CAGTCCCCGTCAAGCATCATA 59.861 52.381 0.00 0.00 0.00 2.15
1586 1647 2.972625 TGTAGTTGATCCAGGAAAGCG 58.027 47.619 0.00 0.00 0.00 4.68
1735 1799 7.457561 AGAGAGGAGGCAATAGAAATTATTCC 58.542 38.462 0.00 0.00 36.12 3.01
1768 1839 4.390603 TCGCAACAAATAGCTTACGTGATT 59.609 37.500 0.00 0.00 0.00 2.57
1830 1902 5.973899 TTTTAATGCACAACTGCCTCATA 57.026 34.783 0.00 0.00 43.51 2.15
1859 1931 2.191128 AGCCTCACCAACTGCTTAAG 57.809 50.000 0.00 0.00 0.00 1.85
2041 2138 1.001293 TCTGCATCGCTGTTCACTCTT 59.999 47.619 0.00 0.00 0.00 2.85
2113 2210 8.375506 TGTTCAATCAGAGAACTACTGGTAATT 58.624 33.333 7.47 0.00 44.30 1.40
2236 2362 4.453478 GCAACTCAATGATGTCTGTGAAGA 59.547 41.667 0.00 0.00 0.00 2.87
2391 2569 5.302823 TCACATGTGACTATATGGGAGACAG 59.697 44.000 24.56 0.00 33.52 3.51
2438 2616 7.909518 TCTGGATTGATGAATGGAATTGTTTT 58.090 30.769 0.00 0.00 36.07 2.43
2691 2881 1.635663 GGAAGGACATGTCGGTTGCG 61.636 60.000 19.33 0.00 0.00 4.85
2710 2900 0.727398 GCTGGCAATGTCGAAGGTAC 59.273 55.000 0.00 0.00 0.00 3.34
2924 3132 6.154706 GGACCATTTCTTCCTCTAGTAGTTGA 59.845 42.308 0.00 0.00 0.00 3.18
2982 3221 4.040047 TCATCCCCATCAGTTATGTGACT 58.960 43.478 0.00 0.00 33.34 3.41
2993 3232 7.364522 TCAGTTATGTGACTCTATTTTGCAC 57.635 36.000 0.00 0.00 0.00 4.57
3007 3246 9.897744 CTCTATTTTGCACTTTATCACTGAAAA 57.102 29.630 0.00 0.00 0.00 2.29
3022 3261 6.650120 TCACTGAAAAGTTTAGAGTTGGAGT 58.350 36.000 0.00 0.00 0.00 3.85
3373 3650 9.340695 CGCATTGAGAATATTTTTGAGTTACAA 57.659 29.630 0.00 0.00 36.65 2.41
3432 3710 9.010029 GTCCAATTTACTTTCTTGAATACTCCA 57.990 33.333 0.00 0.00 0.00 3.86
3433 3711 9.753674 TCCAATTTACTTTCTTGAATACTCCAT 57.246 29.630 0.00 0.00 0.00 3.41
3438 3716 6.272822 ACTTTCTTGAATACTCCATTTGGC 57.727 37.500 0.00 0.00 34.44 4.52
3440 3718 6.438425 ACTTTCTTGAATACTCCATTTGGCAT 59.562 34.615 0.00 0.00 34.44 4.40
3441 3719 6.455360 TTCTTGAATACTCCATTTGGCATC 57.545 37.500 0.00 0.00 34.44 3.91
3443 3721 5.357878 TCTTGAATACTCCATTTGGCATCAC 59.642 40.000 0.00 0.00 34.44 3.06
3444 3722 4.598022 TGAATACTCCATTTGGCATCACA 58.402 39.130 0.00 0.00 34.44 3.58
3445 3723 5.015515 TGAATACTCCATTTGGCATCACAA 58.984 37.500 0.00 0.00 34.44 3.33
3446 3724 4.989279 ATACTCCATTTGGCATCACAAC 57.011 40.909 0.00 0.00 34.44 3.32
3448 3726 2.821969 ACTCCATTTGGCATCACAACTC 59.178 45.455 0.00 0.00 34.44 3.01
3450 3728 1.894466 CCATTTGGCATCACAACTCCA 59.106 47.619 0.00 0.00 0.00 3.86
3451 3729 2.498481 CCATTTGGCATCACAACTCCAT 59.502 45.455 0.00 0.00 0.00 3.41
3452 3730 3.055675 CCATTTGGCATCACAACTCCATT 60.056 43.478 0.00 0.00 0.00 3.16
3453 3731 4.563993 CCATTTGGCATCACAACTCCATTT 60.564 41.667 0.00 0.00 0.00 2.32
3454 3732 3.663995 TTGGCATCACAACTCCATTTG 57.336 42.857 0.00 0.00 0.00 2.32
3456 3734 1.895131 GGCATCACAACTCCATTTGGT 59.105 47.619 0.00 0.00 36.34 3.67
3457 3735 3.088532 GGCATCACAACTCCATTTGGTA 58.911 45.455 0.00 0.00 36.34 3.25
3459 3737 4.440525 GGCATCACAACTCCATTTGGTATG 60.441 45.833 0.00 0.00 36.34 2.39
3460 3738 4.158394 GCATCACAACTCCATTTGGTATGT 59.842 41.667 0.00 0.00 36.34 2.29
3461 3739 5.356751 GCATCACAACTCCATTTGGTATGTA 59.643 40.000 0.00 0.00 36.34 2.29
3463 3741 7.416664 GCATCACAACTCCATTTGGTATGTAAT 60.417 37.037 0.00 0.00 36.34 1.89
3466 3744 9.693739 TCACAACTCCATTTGGTATGTAATATT 57.306 29.630 0.00 0.00 36.34 1.28
3545 4128 7.279981 TGGCATCACAACATCAACTAGTTATAC 59.720 37.037 8.04 0.00 0.00 1.47
3796 5153 1.734465 CCCAGAAACTGCAACGATCTC 59.266 52.381 0.00 0.00 0.00 2.75
4172 5531 0.242825 TAGCCGGTCTGAACAACTCG 59.757 55.000 1.90 0.00 0.00 4.18
4198 5557 4.729227 TTTGAACCTGTGGGAAGAAAAC 57.271 40.909 0.00 0.00 36.25 2.43
4256 5618 1.333931 GCATAGTGTCGGATCAGACGA 59.666 52.381 19.11 9.01 43.70 4.20
4396 5759 8.760735 GGAAGTATAAGGACTCCTAGAAAAGTT 58.239 37.037 0.00 0.00 31.13 2.66
4414 5777 2.972713 AGTTGTGCTCTCAGGAACCTTA 59.027 45.455 0.00 0.00 0.00 2.69
4477 5840 2.695666 TGTCCGGCCAAAATTCTTGAAA 59.304 40.909 2.24 0.00 0.00 2.69
4720 6091 2.509964 ACCAGGACTTTTGGACTTGACT 59.490 45.455 0.00 0.00 39.08 3.41
4754 6125 2.451490 TGAGTACTGAGCAGGAAGAGG 58.549 52.381 0.00 0.00 0.00 3.69
4928 6302 4.415596 TGATATCAAAGTTGGGGCAAAGT 58.584 39.130 1.98 0.00 0.00 2.66
5030 6404 6.653526 TTCTCATTTTCTTGGAAATGCTGA 57.346 33.333 8.99 7.35 43.42 4.26
5137 6511 3.260632 TCGAGAGATTCAACCAATCACCA 59.739 43.478 0.00 0.00 43.27 4.17
5282 6656 1.070758 GTGCTTTCAGACCAGGTCAGA 59.929 52.381 22.31 16.50 34.60 3.27
5449 6823 1.289380 GGACGTTTCAGAGAGCGGT 59.711 57.895 0.00 0.00 0.00 5.68
5467 6841 2.767505 GGTGACAGGTTTCTCGACAAT 58.232 47.619 0.00 0.00 0.00 2.71
5529 6903 3.786516 TGTGTATCCTAATCGTGCGAA 57.213 42.857 0.00 0.00 0.00 4.70
5530 6904 3.441163 TGTGTATCCTAATCGTGCGAAC 58.559 45.455 0.00 0.00 0.00 3.95
5695 7181 8.225603 AGTTTGAACTTTCTATGCTTCTTTCA 57.774 30.769 0.00 0.00 35.21 2.69
5697 7183 7.807977 TTGAACTTTCTATGCTTCTTTCAGT 57.192 32.000 0.00 0.00 0.00 3.41
5698 7184 8.902540 TTGAACTTTCTATGCTTCTTTCAGTA 57.097 30.769 0.00 0.00 0.00 2.74
5706 7194 9.448438 TTCTATGCTTCTTTCAGTATTTTGCTA 57.552 29.630 0.00 0.00 0.00 3.49
5724 7213 6.715344 TTGCTAATCGTCTTAATCGTGTTT 57.285 33.333 0.00 0.00 0.00 2.83
5753 7242 8.466617 TGAAGAGATATAAGAGGGTACAAGTC 57.533 38.462 0.00 0.00 0.00 3.01
5774 7265 9.077674 CAAGTCTAGTAGTACAAGTATTTGCAG 57.922 37.037 2.52 0.00 37.85 4.41
5942 7436 1.604604 TTTTCCTGAGGCCTTGTTCG 58.395 50.000 6.77 0.00 0.00 3.95
5976 7470 1.846439 TGGAGAGGATTGATGGGGAAC 59.154 52.381 0.00 0.00 0.00 3.62
6035 7538 0.846693 AACCCCTGAACAAGCTCTGT 59.153 50.000 0.00 0.00 41.27 3.41
6036 7539 1.729586 ACCCCTGAACAAGCTCTGTA 58.270 50.000 0.00 0.00 37.23 2.74
6037 7540 2.054799 ACCCCTGAACAAGCTCTGTAA 58.945 47.619 0.00 0.00 37.23 2.41
6038 7541 2.644798 ACCCCTGAACAAGCTCTGTAAT 59.355 45.455 0.00 0.00 37.23 1.89
6039 7542 3.074538 ACCCCTGAACAAGCTCTGTAATT 59.925 43.478 0.00 0.00 37.23 1.40
6040 7543 4.082125 CCCCTGAACAAGCTCTGTAATTT 58.918 43.478 0.00 0.00 37.23 1.82
6041 7544 4.524328 CCCCTGAACAAGCTCTGTAATTTT 59.476 41.667 0.00 0.00 37.23 1.82
6042 7545 5.335976 CCCCTGAACAAGCTCTGTAATTTTC 60.336 44.000 0.00 0.00 37.23 2.29
6056 7559 5.322754 TGTAATTTTCGGGGGAATTACACA 58.677 37.500 14.29 0.79 46.03 3.72
6066 7569 2.416202 GGGAATTACACAACCGTTACCG 59.584 50.000 0.00 0.00 0.00 4.02
6068 7571 2.460757 ATTACACAACCGTTACCGCT 57.539 45.000 0.00 0.00 0.00 5.52
6108 7624 3.084786 GGGAAGCTCAGCACTGTAATTT 58.915 45.455 0.00 0.00 0.00 1.82
6139 7655 2.233566 TGCCCAGCTCCCTGTGATT 61.234 57.895 0.00 0.00 37.38 2.57
6146 7662 0.961019 GCTCCCTGTGATTTGCAACA 59.039 50.000 0.00 0.00 0.00 3.33
6168 7684 9.743057 CAACACAAGAATAGTTGGTTCAAATTA 57.257 29.630 0.00 0.00 39.06 1.40
6169 7685 9.744468 AACACAAGAATAGTTGGTTCAAATTAC 57.256 29.630 0.00 0.00 0.00 1.89
6232 7765 8.540507 AGTTAGGTATAGATGTCATGAACACT 57.459 34.615 0.00 0.00 41.75 3.55
6267 7802 4.394920 TCTGAAGGAAAACAGACACACAAC 59.605 41.667 0.00 0.00 38.08 3.32
6272 7807 5.848406 AGGAAAACAGACACACAACAAAAA 58.152 33.333 0.00 0.00 0.00 1.94
6285 7820 4.388165 CACAACAAAAACAACTGCACATCA 59.612 37.500 0.00 0.00 0.00 3.07
6290 7825 4.989279 AAAACAACTGCACATCAGAGTT 57.011 36.364 0.00 1.31 45.72 3.01
6301 7836 3.937706 CACATCAGAGTTCAGAATGGTCC 59.062 47.826 0.00 0.00 36.16 4.46
6303 7838 3.969287 TCAGAGTTCAGAATGGTCCTG 57.031 47.619 0.00 0.00 36.16 3.86
6322 7857 2.665165 TGGAAACAGGCAAACAGTGAT 58.335 42.857 0.00 0.00 35.01 3.06
6323 7858 2.361757 TGGAAACAGGCAAACAGTGATG 59.638 45.455 0.00 0.00 35.01 3.07
6324 7859 2.397549 GAAACAGGCAAACAGTGATGC 58.602 47.619 14.58 14.58 41.82 3.91
6325 7860 1.696063 AACAGGCAAACAGTGATGCT 58.304 45.000 19.76 8.06 42.20 3.79
6326 7861 2.566833 ACAGGCAAACAGTGATGCTA 57.433 45.000 19.76 0.00 42.20 3.49
6327 7862 3.077484 ACAGGCAAACAGTGATGCTAT 57.923 42.857 19.76 10.20 42.20 2.97
6328 7863 3.012518 ACAGGCAAACAGTGATGCTATC 58.987 45.455 19.76 8.26 42.20 2.08
6329 7864 3.011818 CAGGCAAACAGTGATGCTATCA 58.988 45.455 19.76 0.00 42.20 2.15
6330 7865 3.630769 CAGGCAAACAGTGATGCTATCAT 59.369 43.478 19.76 4.75 42.04 2.45
6331 7866 3.630769 AGGCAAACAGTGATGCTATCATG 59.369 43.478 19.76 0.00 42.04 3.07
6332 7867 3.243301 GGCAAACAGTGATGCTATCATGG 60.243 47.826 19.76 2.01 42.04 3.66
6333 7868 3.628942 GCAAACAGTGATGCTATCATGGA 59.371 43.478 15.33 0.00 42.04 3.41
6334 7869 4.096833 GCAAACAGTGATGCTATCATGGAA 59.903 41.667 15.33 0.00 42.04 3.53
6335 7870 5.575957 CAAACAGTGATGCTATCATGGAAC 58.424 41.667 0.00 0.00 42.04 3.62
6336 7871 3.461061 ACAGTGATGCTATCATGGAACG 58.539 45.455 0.00 0.00 42.04 3.95
6337 7872 2.222678 CAGTGATGCTATCATGGAACGC 59.777 50.000 0.00 0.00 42.04 4.84
6338 7873 2.103771 AGTGATGCTATCATGGAACGCT 59.896 45.455 0.00 0.00 42.04 5.07
6339 7874 3.321968 AGTGATGCTATCATGGAACGCTA 59.678 43.478 0.00 0.00 42.04 4.26
6340 7875 4.058124 GTGATGCTATCATGGAACGCTAA 58.942 43.478 0.00 0.00 42.04 3.09
6341 7876 4.511454 GTGATGCTATCATGGAACGCTAAA 59.489 41.667 0.00 0.00 42.04 1.85
6342 7877 4.511454 TGATGCTATCATGGAACGCTAAAC 59.489 41.667 0.00 0.00 33.59 2.01
6343 7878 3.867857 TGCTATCATGGAACGCTAAACA 58.132 40.909 0.00 0.00 0.00 2.83
6344 7879 3.871006 TGCTATCATGGAACGCTAAACAG 59.129 43.478 0.00 0.00 0.00 3.16
6345 7880 4.119862 GCTATCATGGAACGCTAAACAGA 58.880 43.478 0.00 0.00 0.00 3.41
6346 7881 4.570772 GCTATCATGGAACGCTAAACAGAA 59.429 41.667 0.00 0.00 0.00 3.02
6347 7882 5.064707 GCTATCATGGAACGCTAAACAGAAA 59.935 40.000 0.00 0.00 0.00 2.52
6348 7883 5.957842 ATCATGGAACGCTAAACAGAAAA 57.042 34.783 0.00 0.00 0.00 2.29
6349 7884 5.759506 TCATGGAACGCTAAACAGAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
6350 7885 6.325919 TCATGGAACGCTAAACAGAAAAAT 57.674 33.333 0.00 0.00 0.00 1.82
6351 7886 6.744112 TCATGGAACGCTAAACAGAAAAATT 58.256 32.000 0.00 0.00 0.00 1.82
6352 7887 6.861055 TCATGGAACGCTAAACAGAAAAATTC 59.139 34.615 0.00 0.00 0.00 2.17
6353 7888 6.137794 TGGAACGCTAAACAGAAAAATTCA 57.862 33.333 0.00 0.00 0.00 2.57
6354 7889 6.205784 TGGAACGCTAAACAGAAAAATTCAG 58.794 36.000 0.00 0.00 0.00 3.02
6355 7890 5.117135 GGAACGCTAAACAGAAAAATTCAGC 59.883 40.000 0.00 0.00 0.00 4.26
6356 7891 5.181690 ACGCTAAACAGAAAAATTCAGCA 57.818 34.783 0.00 0.00 0.00 4.41
6357 7892 5.215160 ACGCTAAACAGAAAAATTCAGCAG 58.785 37.500 0.00 0.00 0.00 4.24
6358 7893 4.618489 CGCTAAACAGAAAAATTCAGCAGG 59.382 41.667 0.00 0.00 0.00 4.85
6359 7894 4.925646 GCTAAACAGAAAAATTCAGCAGGG 59.074 41.667 0.00 0.00 0.00 4.45
6360 7895 3.391506 AACAGAAAAATTCAGCAGGGC 57.608 42.857 0.00 0.00 0.00 5.19
6361 7896 2.601905 ACAGAAAAATTCAGCAGGGCT 58.398 42.857 0.00 0.00 40.77 5.19
6362 7897 3.766545 ACAGAAAAATTCAGCAGGGCTA 58.233 40.909 0.00 0.00 36.40 3.93
6363 7898 3.760684 ACAGAAAAATTCAGCAGGGCTAG 59.239 43.478 0.00 0.00 36.40 3.42
6364 7899 2.757314 AGAAAAATTCAGCAGGGCTAGC 59.243 45.455 6.04 6.04 36.40 3.42
6365 7900 2.220653 AAAATTCAGCAGGGCTAGCA 57.779 45.000 18.24 0.00 36.40 3.49
6366 7901 2.220653 AAATTCAGCAGGGCTAGCAA 57.779 45.000 18.24 0.00 36.40 3.91
6367 7902 2.449137 AATTCAGCAGGGCTAGCAAT 57.551 45.000 18.24 2.57 36.40 3.56
6380 7915 2.681976 GCTAGCAATGGGAGAAGCTTCA 60.682 50.000 27.57 8.65 38.47 3.02
6394 7929 6.205658 GGAGAAGCTTCAACATATACATTCCC 59.794 42.308 27.57 0.00 0.00 3.97
6402 7937 4.729552 ACATATACATTCCCCATGCAGT 57.270 40.909 0.00 0.00 36.14 4.40
6436 7971 6.039717 ACACAACAGTAGCAAAGAATTGACAT 59.960 34.615 0.00 0.00 38.94 3.06
6459 7994 4.897224 ACGACGCAACATTATCATTTCTG 58.103 39.130 0.00 0.00 0.00 3.02
6485 8020 7.060289 GCGGTTTACTCTGTTTATTTTAGCAAC 59.940 37.037 0.00 0.00 0.00 4.17
6537 8072 5.326069 TCCTCTTAGCAGTTTCTGTAGACT 58.674 41.667 0.00 0.00 33.43 3.24
6547 8082 5.010112 CAGTTTCTGTAGACTGGAACTCTGA 59.990 44.000 9.59 0.00 40.33 3.27
6576 8111 3.758554 CACCGGAAGAAATGAGGACAAAT 59.241 43.478 9.46 0.00 0.00 2.32
6577 8112 4.941263 CACCGGAAGAAATGAGGACAAATA 59.059 41.667 9.46 0.00 0.00 1.40
6578 8113 5.590259 CACCGGAAGAAATGAGGACAAATAT 59.410 40.000 9.46 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.516930 AAGTGCAGTGCGGCTGTT 60.517 55.556 11.20 0.00 46.64 3.16
1 2 2.974698 GAAGTGCAGTGCGGCTGT 60.975 61.111 11.20 2.83 46.64 4.40
4 5 2.449556 GAAGTGAAGTGCAGTGCGGC 62.450 60.000 11.20 5.99 0.00 6.53
5 6 0.882042 AGAAGTGAAGTGCAGTGCGG 60.882 55.000 11.20 0.00 30.06 5.69
6 7 0.510359 GAGAAGTGAAGTGCAGTGCG 59.490 55.000 11.20 0.00 30.06 5.34
12 13 1.346068 AGTGGAGGAGAAGTGAAGTGC 59.654 52.381 0.00 0.00 0.00 4.40
27 28 0.967887 CTCCTCGAGGCTTGAGTGGA 60.968 60.000 27.39 18.61 34.44 4.02
49 50 1.018226 CGGGAGCTGCTCTGTTCTTG 61.018 60.000 27.09 7.54 0.00 3.02
83 95 2.964911 GATTTCTCGAGTCGCCTGG 58.035 57.895 13.13 0.00 0.00 4.45
132 144 2.455557 CTTGAGGAGAAGAGGCAGAGA 58.544 52.381 0.00 0.00 0.00 3.10
160 172 3.944015 CGAAATGGCAGGAAGAAGAAGAT 59.056 43.478 0.00 0.00 0.00 2.40
191 203 4.176752 GGGAGACGGGTGGGATGC 62.177 72.222 0.00 0.00 0.00 3.91
196 208 2.933834 AAAGGGGGAGACGGGTGG 60.934 66.667 0.00 0.00 0.00 4.61
197 209 2.669240 GAAAGGGGGAGACGGGTG 59.331 66.667 0.00 0.00 0.00 4.61
198 210 3.001406 CGAAAGGGGGAGACGGGT 61.001 66.667 0.00 0.00 0.00 5.28
234 246 0.831307 CGGTCCAAAAACCCCCAAAA 59.169 50.000 0.00 0.00 35.79 2.44
294 306 2.068834 TCCTACCCCGAATGAGAGAC 57.931 55.000 0.00 0.00 0.00 3.36
347 359 5.124776 CACTCGATTTGGGCCTAATTAAACA 59.875 40.000 14.37 0.00 0.00 2.83
348 360 5.578776 CACTCGATTTGGGCCTAATTAAAC 58.421 41.667 14.37 1.34 0.00 2.01
352 364 2.024414 GCACTCGATTTGGGCCTAATT 58.976 47.619 14.37 0.00 0.00 1.40
372 384 1.344942 CGCGTCCGACCTCAAGAAAG 61.345 60.000 0.00 0.00 36.29 2.62
390 402 6.094739 TCTGATGCGATTTTTAGTTTCTCG 57.905 37.500 0.00 0.00 0.00 4.04
394 406 6.381801 CCAGTTCTGATGCGATTTTTAGTTT 58.618 36.000 1.00 0.00 0.00 2.66
397 409 4.201950 CCCCAGTTCTGATGCGATTTTTAG 60.202 45.833 1.00 0.00 0.00 1.85
399 411 2.493278 CCCCAGTTCTGATGCGATTTTT 59.507 45.455 1.00 0.00 0.00 1.94
406 418 0.890683 CCAAACCCCAGTTCTGATGC 59.109 55.000 1.00 0.00 34.19 3.91
415 427 1.304134 GTGCTACCCCAAACCCCAG 60.304 63.158 0.00 0.00 0.00 4.45
416 428 2.847650 GGTGCTACCCCAAACCCCA 61.848 63.158 0.00 0.00 30.04 4.96
427 439 1.366854 GCGGCAAACCTAGGTGCTAC 61.367 60.000 17.14 8.15 40.70 3.58
428 440 1.078708 GCGGCAAACCTAGGTGCTA 60.079 57.895 17.14 0.00 40.70 3.49
464 476 7.336931 AGCGTAATTAAAGATGACCACAGATTT 59.663 33.333 0.00 0.00 0.00 2.17
473 486 4.025979 CACGGGAGCGTAATTAAAGATGAC 60.026 45.833 0.00 0.00 0.00 3.06
474 487 4.116961 CACGGGAGCGTAATTAAAGATGA 58.883 43.478 0.00 0.00 0.00 2.92
478 491 2.004017 TGCACGGGAGCGTAATTAAAG 58.996 47.619 0.00 0.00 37.31 1.85
493 506 1.787989 GCACGAACATCAGAATGCACG 60.788 52.381 0.00 0.00 39.19 5.34
524 537 5.337578 AATAAACCAGCACAGTTTGTTGT 57.662 34.783 8.50 0.00 37.22 3.32
529 542 5.391312 GATGGAATAAACCAGCACAGTTT 57.609 39.130 0.00 4.51 44.53 2.66
555 568 2.666317 CCAACCTCAGGAACCAAAAGT 58.334 47.619 0.00 0.00 0.00 2.66
556 569 1.963515 CCCAACCTCAGGAACCAAAAG 59.036 52.381 0.00 0.00 0.00 2.27
557 570 1.571457 TCCCAACCTCAGGAACCAAAA 59.429 47.619 0.00 0.00 0.00 2.44
559 572 1.227249 TTCCCAACCTCAGGAACCAA 58.773 50.000 0.00 0.00 37.23 3.67
561 574 2.171003 CAATTCCCAACCTCAGGAACC 58.829 52.381 0.00 0.00 44.70 3.62
601 614 1.172180 CGGCAGGAACCAAAAGCTCA 61.172 55.000 0.00 0.00 0.00 4.26
602 615 1.581447 CGGCAGGAACCAAAAGCTC 59.419 57.895 0.00 0.00 0.00 4.09
608 621 0.693622 TAATCACCGGCAGGAACCAA 59.306 50.000 10.86 0.00 41.02 3.67
610 623 1.141053 AGATAATCACCGGCAGGAACC 59.859 52.381 10.86 0.00 41.02 3.62
631 644 4.948004 AGAGCATGCATTTTCTGAATCAGA 59.052 37.500 21.98 9.18 38.87 3.27
632 645 5.250235 AGAGCATGCATTTTCTGAATCAG 57.750 39.130 21.98 3.38 0.00 2.90
634 647 6.963049 AAAAGAGCATGCATTTTCTGAATC 57.037 33.333 21.98 4.21 0.00 2.52
635 648 6.148811 CCAAAAAGAGCATGCATTTTCTGAAT 59.851 34.615 24.93 12.54 0.00 2.57
636 649 5.467399 CCAAAAAGAGCATGCATTTTCTGAA 59.533 36.000 24.93 0.00 0.00 3.02
638 651 4.753107 ACCAAAAAGAGCATGCATTTTCTG 59.247 37.500 24.93 22.47 0.00 3.02
660 675 7.937880 CACTAATTTAGTCTGCAGCAAGCATAC 60.938 40.741 9.47 10.40 44.94 2.39
661 676 6.037500 CACTAATTTAGTCTGCAGCAAGCATA 59.962 38.462 9.47 0.00 44.94 3.14
662 677 5.163683 CACTAATTTAGTCTGCAGCAAGCAT 60.164 40.000 9.47 0.00 44.94 3.79
663 678 4.154737 CACTAATTTAGTCTGCAGCAAGCA 59.845 41.667 9.47 3.76 44.25 3.91
670 692 7.432148 TCTAATCCCACTAATTTAGTCTGCA 57.568 36.000 6.10 0.00 36.76 4.41
673 695 9.225682 TCCATTCTAATCCCACTAATTTAGTCT 57.774 33.333 6.10 0.00 36.76 3.24
679 701 8.917088 CATGTTTCCATTCTAATCCCACTAATT 58.083 33.333 0.00 0.00 0.00 1.40
711 733 7.714377 ACTGTTTCATCACAAATTAAATGCCAA 59.286 29.630 0.00 0.00 0.00 4.52
734 756 8.786898 TCTGTAAATTCAAGGAAAGATGAACTG 58.213 33.333 0.00 0.00 38.29 3.16
735 757 8.924511 TCTGTAAATTCAAGGAAAGATGAACT 57.075 30.769 0.00 0.00 38.29 3.01
822 844 4.837093 TTAAGTGTGGGCATAACTAGCT 57.163 40.909 0.00 0.00 0.00 3.32
839 861 6.375174 TGACCCATCAGATGTCAACATTTAAG 59.625 38.462 9.64 0.00 36.16 1.85
850 872 1.918262 ACACCATGACCCATCAGATGT 59.082 47.619 9.64 0.00 38.57 3.06
857 879 1.551430 CATGCAAACACCATGACCCAT 59.449 47.619 0.00 0.00 41.97 4.00
873 895 2.429610 TCTTTACGGAGGGAGTACATGC 59.570 50.000 0.00 0.00 0.00 4.06
877 899 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
878 900 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
879 901 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
880 902 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
881 903 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
899 921 8.851145 CCTGTACTAGTGATCTAAATGCTCTTA 58.149 37.037 5.39 0.00 0.00 2.10
900 922 7.685641 GCCTGTACTAGTGATCTAAATGCTCTT 60.686 40.741 5.39 0.00 0.00 2.85
901 923 6.239176 GCCTGTACTAGTGATCTAAATGCTCT 60.239 42.308 5.39 0.00 0.00 4.09
902 924 5.923684 GCCTGTACTAGTGATCTAAATGCTC 59.076 44.000 5.39 0.00 0.00 4.26
903 925 5.363868 TGCCTGTACTAGTGATCTAAATGCT 59.636 40.000 5.39 0.00 0.00 3.79
904 926 5.601662 TGCCTGTACTAGTGATCTAAATGC 58.398 41.667 5.39 0.00 0.00 3.56
905 927 6.703607 CCTTGCCTGTACTAGTGATCTAAATG 59.296 42.308 5.39 0.00 0.00 2.32
907 929 5.128827 CCCTTGCCTGTACTAGTGATCTAAA 59.871 44.000 5.39 0.00 0.00 1.85
908 930 4.649674 CCCTTGCCTGTACTAGTGATCTAA 59.350 45.833 5.39 0.00 0.00 2.10
909 931 4.215908 CCCTTGCCTGTACTAGTGATCTA 58.784 47.826 5.39 0.00 0.00 1.98
910 932 3.034635 CCCTTGCCTGTACTAGTGATCT 58.965 50.000 5.39 0.00 0.00 2.75
911 933 2.766828 ACCCTTGCCTGTACTAGTGATC 59.233 50.000 5.39 0.00 0.00 2.92
912 934 2.501723 CACCCTTGCCTGTACTAGTGAT 59.498 50.000 5.39 0.00 0.00 3.06
914 936 1.899814 TCACCCTTGCCTGTACTAGTG 59.100 52.381 5.39 0.00 0.00 2.74
915 937 2.320681 TCACCCTTGCCTGTACTAGT 57.679 50.000 0.00 0.00 0.00 2.57
917 939 2.976882 ACTTTCACCCTTGCCTGTACTA 59.023 45.455 0.00 0.00 0.00 1.82
918 940 1.774856 ACTTTCACCCTTGCCTGTACT 59.225 47.619 0.00 0.00 0.00 2.73
919 941 2.271944 ACTTTCACCCTTGCCTGTAC 57.728 50.000 0.00 0.00 0.00 2.90
920 942 2.706723 TGTACTTTCACCCTTGCCTGTA 59.293 45.455 0.00 0.00 0.00 2.74
923 945 1.493022 TGTGTACTTTCACCCTTGCCT 59.507 47.619 0.00 0.00 37.51 4.75
924 946 1.975660 TGTGTACTTTCACCCTTGCC 58.024 50.000 0.00 0.00 37.51 4.52
968 1026 8.078596 AGAAGATAACAAAAGACAGTGAAATGC 58.921 33.333 0.00 0.00 0.00 3.56
1083 1141 4.081972 AGACGCACAGATCTGTTATGACTT 60.082 41.667 25.84 6.92 42.83 3.01
1371 1429 4.222145 ACCGTTTTCTGAGCCTCAGTATTA 59.778 41.667 20.67 0.00 44.58 0.98
1586 1647 2.689471 TCATTGTCAATACCCATGCTGC 59.311 45.455 0.00 0.00 0.00 5.25
1735 1799 5.007430 AGCTATTTGTTGCGATCATGAGAAG 59.993 40.000 0.09 0.00 0.00 2.85
1830 1902 1.729586 TGGTGAGGCTTGACTAGGTT 58.270 50.000 0.00 0.00 0.00 3.50
1859 1931 2.660236 AGTTTCGACAAACGCGATACTC 59.340 45.455 15.93 0.34 43.20 2.59
2113 2210 7.955918 AGGCATATATATGAACATGCTCGATA 58.044 34.615 24.06 0.00 42.66 2.92
2266 2422 3.947834 CCCTATAACTCAACAGGGCAAAG 59.052 47.826 0.00 0.00 41.34 2.77
2312 2472 5.047377 TGAGTGGGCATATTTTCTGGAAAAC 60.047 40.000 10.16 0.00 42.32 2.43
2364 2525 6.480320 GTCTCCCATATAGTCACATGTGAAAC 59.520 42.308 29.42 18.66 41.85 2.78
2438 2616 7.016153 ACAAGATAGTGAACATTACTGGGAA 57.984 36.000 0.00 0.00 0.00 3.97
2691 2881 0.727398 GTACCTTCGACATTGCCAGC 59.273 55.000 0.00 0.00 0.00 4.85
2729 2919 8.434589 AAACAAATAAAGGGAAGATGGATTGA 57.565 30.769 0.00 0.00 0.00 2.57
2957 3184 4.132336 CACATAACTGATGGGGATGACAG 58.868 47.826 0.00 0.00 40.18 3.51
2982 3221 9.897744 CTTTTCAGTGATAAAGTGCAAAATAGA 57.102 29.630 14.56 0.00 0.00 1.98
2993 3232 9.884465 CCAACTCTAAACTTTTCAGTGATAAAG 57.116 33.333 18.36 18.36 37.38 1.85
3007 3246 5.711036 AGATCGTGTACTCCAACTCTAAACT 59.289 40.000 0.00 0.00 0.00 2.66
3022 3261 5.242171 TCAAGACAACCAGTAAGATCGTGTA 59.758 40.000 0.00 0.00 0.00 2.90
3373 3650 7.133133 ACGGATACTACATACCTTTTTCCAT 57.867 36.000 0.00 0.00 0.00 3.41
3432 3710 4.563993 CCAAATGGAGTTGTGATGCCAAAT 60.564 41.667 0.00 0.00 37.39 2.32
3433 3711 3.244146 CCAAATGGAGTTGTGATGCCAAA 60.244 43.478 0.00 0.00 37.39 3.28
3434 3712 2.299582 CCAAATGGAGTTGTGATGCCAA 59.700 45.455 0.00 0.00 37.39 4.52
3436 3714 1.895131 ACCAAATGGAGTTGTGATGCC 59.105 47.619 6.42 0.00 38.94 4.40
3438 3716 5.902613 ACATACCAAATGGAGTTGTGATG 57.097 39.130 6.42 1.34 38.94 3.07
3440 3718 9.693739 AATATTACATACCAAATGGAGTTGTGA 57.306 29.630 6.42 4.20 38.94 3.58
3545 4128 5.611796 TGATTTGATTGACAAGAAGACGG 57.388 39.130 0.00 0.00 39.77 4.79
3796 5153 4.363999 CTGAAGGATTAGTAGTTGCCTCG 58.636 47.826 0.00 0.00 0.00 4.63
4172 5531 3.888930 TCTTCCCACAGGTTCAAAACATC 59.111 43.478 0.00 0.00 0.00 3.06
4256 5618 4.380233 GCACATGACTGCTTCTGCTTTATT 60.380 41.667 0.00 0.00 40.48 1.40
4396 5759 4.041567 TGAAATAAGGTTCCTGAGAGCACA 59.958 41.667 0.00 0.00 0.00 4.57
4414 5777 5.824421 ACCTCCTTGACATGATTCTGAAAT 58.176 37.500 0.00 0.00 0.00 2.17
4477 5840 2.490217 CCACGAGATCGCTCCGTT 59.510 61.111 1.39 0.00 44.43 4.44
4720 6091 7.066887 TGCTCAGTACTCATTTTCAGAAAAACA 59.933 33.333 12.38 1.63 37.20 2.83
4754 6125 1.074951 CCACCAAACCCCTCAGGAC 59.925 63.158 0.00 0.00 39.89 3.85
5011 6385 5.404946 ACGATCAGCATTTCCAAGAAAATG 58.595 37.500 5.25 5.25 45.36 2.32
5030 6404 4.290942 ACCCATCCTTTCTCTCTTACGAT 58.709 43.478 0.00 0.00 0.00 3.73
5137 6511 2.036862 ACCGAAGAAAACCTTAGCGTCT 59.963 45.455 0.00 0.00 34.68 4.18
5206 6580 1.270625 TGGACGTCCAGAATGACAACC 60.271 52.381 33.23 3.42 42.01 3.77
5449 6823 3.554960 CCTCATTGTCGAGAAACCTGTCA 60.555 47.826 0.00 0.00 34.79 3.58
5467 6841 0.245266 TATCTTGTCGCAACGCCTCA 59.755 50.000 0.00 0.00 0.00 3.86
5694 7180 8.540492 ACGATTAAGACGATTAGCAAAATACTG 58.460 33.333 10.90 0.00 34.70 2.74
5695 7181 8.540492 CACGATTAAGACGATTAGCAAAATACT 58.460 33.333 10.90 0.00 34.70 2.12
5697 7183 8.415192 ACACGATTAAGACGATTAGCAAAATA 57.585 30.769 10.90 0.00 34.70 1.40
5698 7184 7.303634 ACACGATTAAGACGATTAGCAAAAT 57.696 32.000 10.90 0.00 34.70 1.82
5702 7190 5.636121 ACAAACACGATTAAGACGATTAGCA 59.364 36.000 10.90 0.00 34.70 3.49
5703 7191 6.091123 ACAAACACGATTAAGACGATTAGC 57.909 37.500 10.90 0.00 34.70 3.09
5706 7194 7.821595 TCATACAAACACGATTAAGACGATT 57.178 32.000 10.90 3.64 34.70 3.34
5724 7213 9.877222 TTGTACCCTCTTATATCTCTTCATACA 57.123 33.333 0.00 0.00 0.00 2.29
5753 7242 8.459635 TCAGACTGCAAATACTTGTACTACTAG 58.540 37.037 0.00 0.00 34.79 2.57
5774 7265 7.360438 CCACTAGACACTTTTAGCATTTCAGAC 60.360 40.741 0.00 0.00 0.00 3.51
5844 7337 5.360714 GCTCCAGGGATGAACAATAAAATCA 59.639 40.000 0.00 0.00 0.00 2.57
5969 7463 1.702957 CCCTACAAGTCAAGTTCCCCA 59.297 52.381 0.00 0.00 0.00 4.96
5976 7470 6.944234 GGATTAAATCCCCTACAAGTCAAG 57.056 41.667 0.00 0.00 43.88 3.02
6035 7538 5.185442 GGTTGTGTAATTCCCCCGAAAATTA 59.815 40.000 0.00 0.00 0.00 1.40
6036 7539 4.020928 GGTTGTGTAATTCCCCCGAAAATT 60.021 41.667 0.00 0.00 0.00 1.82
6037 7540 3.512329 GGTTGTGTAATTCCCCCGAAAAT 59.488 43.478 0.00 0.00 0.00 1.82
6038 7541 2.892215 GGTTGTGTAATTCCCCCGAAAA 59.108 45.455 0.00 0.00 0.00 2.29
6039 7542 2.516906 GGTTGTGTAATTCCCCCGAAA 58.483 47.619 0.00 0.00 0.00 3.46
6040 7543 1.611148 CGGTTGTGTAATTCCCCCGAA 60.611 52.381 0.00 0.00 36.12 4.30
6041 7544 0.036199 CGGTTGTGTAATTCCCCCGA 60.036 55.000 0.00 0.00 36.12 5.14
6042 7545 0.321830 ACGGTTGTGTAATTCCCCCG 60.322 55.000 0.00 0.00 39.75 5.73
6066 7569 3.496884 CCTCGAGATCTACACTGTCTAGC 59.503 52.174 15.71 0.00 0.00 3.42
6068 7571 3.710165 TCCCTCGAGATCTACACTGTCTA 59.290 47.826 15.71 0.00 0.00 2.59
6108 7624 1.593196 CTGGGCACTTTTCGACTGAA 58.407 50.000 0.00 0.00 0.00 3.02
6139 7655 5.126222 TGAACCAACTATTCTTGTGTTGCAA 59.874 36.000 0.00 0.00 39.53 4.08
6242 7777 4.394920 TGTGTGTCTGTTTTCCTTCAGAAC 59.605 41.667 0.00 0.00 41.41 3.01
6267 7802 4.675510 ACTCTGATGTGCAGTTGTTTTTG 58.324 39.130 0.00 0.00 45.14 2.44
6272 7807 3.136763 CTGAACTCTGATGTGCAGTTGT 58.863 45.455 0.00 0.00 45.14 3.32
6285 7820 2.907892 TCCAGGACCATTCTGAACTCT 58.092 47.619 0.00 0.00 34.36 3.24
6290 7825 3.423539 CTGTTTCCAGGACCATTCTGA 57.576 47.619 0.00 0.00 34.90 3.27
6301 7836 2.023673 TCACTGTTTGCCTGTTTCCAG 58.976 47.619 0.00 0.00 38.50 3.86
6303 7838 2.863704 GCATCACTGTTTGCCTGTTTCC 60.864 50.000 1.92 0.00 32.66 3.13
6311 7846 3.628942 TCCATGATAGCATCACTGTTTGC 59.371 43.478 0.00 4.70 43.01 3.68
6312 7847 5.575957 GTTCCATGATAGCATCACTGTTTG 58.424 41.667 0.00 0.00 43.01 2.93
6314 7849 3.873361 CGTTCCATGATAGCATCACTGTT 59.127 43.478 0.00 0.00 43.01 3.16
6315 7850 3.461061 CGTTCCATGATAGCATCACTGT 58.539 45.455 0.00 0.00 43.01 3.55
6317 7852 2.103771 AGCGTTCCATGATAGCATCACT 59.896 45.455 0.00 0.00 43.01 3.41
6318 7853 2.487934 AGCGTTCCATGATAGCATCAC 58.512 47.619 0.00 0.00 43.01 3.06
6319 7854 2.916702 AGCGTTCCATGATAGCATCA 57.083 45.000 0.00 2.05 44.55 3.07
6320 7855 4.511454 TGTTTAGCGTTCCATGATAGCATC 59.489 41.667 0.00 0.00 30.68 3.91
6322 7857 3.867857 TGTTTAGCGTTCCATGATAGCA 58.132 40.909 0.00 0.00 0.00 3.49
6323 7858 4.119862 TCTGTTTAGCGTTCCATGATAGC 58.880 43.478 0.00 0.00 0.00 2.97
6324 7859 6.662414 TTTCTGTTTAGCGTTCCATGATAG 57.338 37.500 0.00 0.00 0.00 2.08
6325 7860 7.441890 TTTTTCTGTTTAGCGTTCCATGATA 57.558 32.000 0.00 0.00 0.00 2.15
6326 7861 5.957842 TTTTCTGTTTAGCGTTCCATGAT 57.042 34.783 0.00 0.00 0.00 2.45
6327 7862 5.759506 TTTTTCTGTTTAGCGTTCCATGA 57.240 34.783 0.00 0.00 0.00 3.07
6328 7863 6.640499 TGAATTTTTCTGTTTAGCGTTCCATG 59.360 34.615 0.00 0.00 0.00 3.66
6329 7864 6.744112 TGAATTTTTCTGTTTAGCGTTCCAT 58.256 32.000 0.00 0.00 0.00 3.41
6330 7865 6.137794 TGAATTTTTCTGTTTAGCGTTCCA 57.862 33.333 0.00 0.00 0.00 3.53
6331 7866 5.117135 GCTGAATTTTTCTGTTTAGCGTTCC 59.883 40.000 0.00 0.00 29.27 3.62
6332 7867 5.685511 TGCTGAATTTTTCTGTTTAGCGTTC 59.314 36.000 0.00 0.00 39.11 3.95
6333 7868 5.587289 TGCTGAATTTTTCTGTTTAGCGTT 58.413 33.333 0.00 0.00 39.11 4.84
6334 7869 5.181690 TGCTGAATTTTTCTGTTTAGCGT 57.818 34.783 0.00 0.00 39.11 5.07
6335 7870 4.618489 CCTGCTGAATTTTTCTGTTTAGCG 59.382 41.667 0.00 0.00 39.11 4.26
6336 7871 4.925646 CCCTGCTGAATTTTTCTGTTTAGC 59.074 41.667 0.00 0.00 37.43 3.09
6337 7872 4.925646 GCCCTGCTGAATTTTTCTGTTTAG 59.074 41.667 0.00 0.00 0.00 1.85
6338 7873 4.588528 AGCCCTGCTGAATTTTTCTGTTTA 59.411 37.500 0.00 0.00 37.57 2.01
6339 7874 3.389002 AGCCCTGCTGAATTTTTCTGTTT 59.611 39.130 0.00 0.00 37.57 2.83
6340 7875 2.967887 AGCCCTGCTGAATTTTTCTGTT 59.032 40.909 0.00 0.00 37.57 3.16
6341 7876 2.601905 AGCCCTGCTGAATTTTTCTGT 58.398 42.857 0.00 0.00 37.57 3.41
6342 7877 3.428589 GCTAGCCCTGCTGAATTTTTCTG 60.429 47.826 2.29 0.00 40.10 3.02
6343 7878 2.757314 GCTAGCCCTGCTGAATTTTTCT 59.243 45.455 2.29 0.00 40.10 2.52
6344 7879 2.493278 TGCTAGCCCTGCTGAATTTTTC 59.507 45.455 13.29 0.00 40.10 2.29
6345 7880 2.528564 TGCTAGCCCTGCTGAATTTTT 58.471 42.857 13.29 0.00 40.10 1.94
6346 7881 2.220653 TGCTAGCCCTGCTGAATTTT 57.779 45.000 13.29 0.00 40.10 1.82
6347 7882 2.220653 TTGCTAGCCCTGCTGAATTT 57.779 45.000 13.29 0.00 40.10 1.82
6348 7883 2.029623 CATTGCTAGCCCTGCTGAATT 58.970 47.619 13.29 0.00 40.10 2.17
6349 7884 1.688772 CATTGCTAGCCCTGCTGAAT 58.311 50.000 13.29 0.00 40.10 2.57
6350 7885 0.394762 CCATTGCTAGCCCTGCTGAA 60.395 55.000 13.29 0.00 40.10 3.02
6351 7886 1.225426 CCATTGCTAGCCCTGCTGA 59.775 57.895 13.29 0.00 40.10 4.26
6352 7887 1.826921 CCCATTGCTAGCCCTGCTG 60.827 63.158 13.29 2.39 40.10 4.41
6353 7888 1.992519 CTCCCATTGCTAGCCCTGCT 61.993 60.000 13.29 0.00 43.41 4.24
6354 7889 1.527844 CTCCCATTGCTAGCCCTGC 60.528 63.158 13.29 0.00 0.00 4.85
6355 7890 0.548031 TTCTCCCATTGCTAGCCCTG 59.452 55.000 13.29 9.40 0.00 4.45
6356 7891 0.842635 CTTCTCCCATTGCTAGCCCT 59.157 55.000 13.29 0.00 0.00 5.19
6357 7892 0.821301 GCTTCTCCCATTGCTAGCCC 60.821 60.000 13.29 0.00 0.00 5.19
6358 7893 0.182299 AGCTTCTCCCATTGCTAGCC 59.818 55.000 13.29 0.00 33.64 3.93
6359 7894 1.946081 GAAGCTTCTCCCATTGCTAGC 59.054 52.381 19.44 8.10 35.09 3.42
6360 7895 3.272574 TGAAGCTTCTCCCATTGCTAG 57.727 47.619 26.09 0.00 35.09 3.42
6361 7896 3.244875 TGTTGAAGCTTCTCCCATTGCTA 60.245 43.478 26.09 0.00 35.09 3.49
6362 7897 2.165998 GTTGAAGCTTCTCCCATTGCT 58.834 47.619 26.09 0.00 37.37 3.91
6363 7898 1.888512 TGTTGAAGCTTCTCCCATTGC 59.111 47.619 26.09 8.58 0.00 3.56
6364 7899 6.543465 TGTATATGTTGAAGCTTCTCCCATTG 59.457 38.462 26.09 0.00 0.00 2.82
6365 7900 6.662755 TGTATATGTTGAAGCTTCTCCCATT 58.337 36.000 26.09 15.81 0.00 3.16
6366 7901 6.252599 TGTATATGTTGAAGCTTCTCCCAT 57.747 37.500 26.09 23.24 0.00 4.00
6367 7902 5.692115 TGTATATGTTGAAGCTTCTCCCA 57.308 39.130 26.09 18.88 0.00 4.37
6380 7915 5.065613 ACTGCATGGGGAATGTATATGTT 57.934 39.130 0.00 0.00 38.65 2.71
6402 7937 4.640364 TGCTACTGTTGTGTTCATCATGA 58.360 39.130 0.00 0.00 0.00 3.07
6412 7947 5.820131 TGTCAATTCTTTGCTACTGTTGTG 58.180 37.500 0.00 0.00 32.61 3.33
6436 7971 5.501736 GCAGAAATGATAATGTTGCGTCGTA 60.502 40.000 0.00 0.00 0.00 3.43
6459 7994 6.604930 TGCTAAAATAAACAGAGTAAACCGC 58.395 36.000 0.00 0.00 0.00 5.68
6516 8051 5.184096 TCCAGTCTACAGAAACTGCTAAGAG 59.816 44.000 0.00 0.00 41.24 2.85
6537 8072 1.340248 GGTGACGACTTCAGAGTTCCA 59.660 52.381 0.00 0.00 35.88 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.