Multiple sequence alignment - TraesCS2A01G140100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G140100 chr2A 100.000 3341 0 0 1 3341 85286834 85290174 0.000000e+00 6170
1 TraesCS2A01G140100 chr2A 96.405 306 11 0 432 737 585704265 585703960 3.850000e-139 505
2 TraesCS2A01G140100 chr2D 92.193 2357 116 26 747 3047 84340866 84343210 0.000000e+00 3271
3 TraesCS2A01G140100 chr2D 93.333 255 12 4 3091 3341 84343299 84343552 4.070000e-99 372
4 TraesCS2A01G140100 chr2B 91.201 2364 126 27 748 3047 136429319 136431664 0.000000e+00 3138
5 TraesCS2A01G140100 chr2B 87.382 317 40 0 1 317 136428599 136428915 6.810000e-97 364
6 TraesCS2A01G140100 chr2B 91.321 265 8 3 3091 3341 136431751 136432014 6.860000e-92 348
7 TraesCS2A01G140100 chr2B 95.050 101 5 0 320 420 136429210 136429310 3.450000e-35 159
8 TraesCS2A01G140100 chr7A 96.452 310 10 1 432 740 4784763 4785072 8.270000e-141 510
9 TraesCS2A01G140100 chr4B 96.405 306 11 0 432 737 40215227 40215532 3.850000e-139 505
10 TraesCS2A01G140100 chr5A 95.527 313 14 0 429 741 139481187 139481499 4.980000e-138 501
11 TraesCS2A01G140100 chr4A 95.806 310 13 0 428 737 572708410 572708719 4.980000e-138 501
12 TraesCS2A01G140100 chr4A 94.118 323 17 2 434 755 39082177 39082498 1.080000e-134 490
13 TraesCS2A01G140100 chr3B 95.527 313 14 0 429 741 536900992 536901304 4.980000e-138 501
14 TraesCS2A01G140100 chr1B 96.091 307 12 0 431 737 675768814 675769120 4.980000e-138 501
15 TraesCS2A01G140100 chr5B 92.669 341 16 6 419 756 596082122 596082456 1.800000e-132 483
16 TraesCS2A01G140100 chr7D 84.084 333 47 6 8 335 109316958 109317289 1.930000e-82 316
17 TraesCS2A01G140100 chr7B 81.009 337 53 4 8 335 68551164 68551498 1.190000e-64 257
18 TraesCS2A01G140100 chr6A 78.689 305 60 2 16 320 555967465 555967764 7.310000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G140100 chr2A 85286834 85290174 3340 False 6170.00 6170 100.0000 1 3341 1 chr2A.!!$F1 3340
1 TraesCS2A01G140100 chr2D 84340866 84343552 2686 False 1821.50 3271 92.7630 747 3341 2 chr2D.!!$F1 2594
2 TraesCS2A01G140100 chr2B 136428599 136432014 3415 False 1002.25 3138 91.2385 1 3341 4 chr2B.!!$F1 3340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 907 0.033090 ACGAAAACGTCTCCTCCCAC 59.967 55.0 0.0 0.0 0.0 4.61 F
676 969 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 F
678 971 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2410 0.247576 CTTCTTTCGCTGCAGCATCG 60.248 55.000 36.03 21.31 42.21 3.84 R
2142 2482 0.879090 TCGCTGTTCGCTGTCTAGAA 59.121 50.000 0.00 0.00 38.27 2.10 R
2501 2841 1.127213 GCAAATTGACGCATTGCCAAG 59.873 47.619 2.41 0.00 42.70 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 3.848353 ACATGGGTGAACTTTGCCT 57.152 47.368 0.00 0.00 0.00 4.75
85 86 1.331214 ACATGGGTGAACTTTGCCTG 58.669 50.000 0.00 0.00 0.00 4.85
87 88 0.178953 ATGGGTGAACTTTGCCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
106 107 0.810648 TTGCACCGCATCTTTGATCC 59.189 50.000 0.00 0.00 38.76 3.36
114 115 1.819632 ATCTTTGATCCGGCGGTGC 60.820 57.895 27.32 18.93 0.00 5.01
117 118 2.527547 CTTTGATCCGGCGGTGCAAC 62.528 60.000 27.32 13.68 0.00 4.17
149 150 1.699656 CCGAGCATGCTTGGTTCGAG 61.700 60.000 36.87 18.72 41.59 4.04
150 151 1.016130 CGAGCATGCTTGGTTCGAGT 61.016 55.000 25.10 0.00 32.62 4.18
152 153 0.035317 AGCATGCTTGGTTCGAGTCA 59.965 50.000 16.30 0.00 0.00 3.41
228 229 2.286127 AAAGGAGTAGGAGCTCGCGC 62.286 60.000 7.83 0.00 36.41 6.86
230 231 2.490217 GAGTAGGAGCTCGCGCAA 59.510 61.111 8.75 0.00 39.10 4.85
302 303 2.356793 GGCTCCGATGATGGCGAG 60.357 66.667 0.00 0.00 0.00 5.03
317 318 3.031013 TGGCGAGGATGAAGATGAGTAA 58.969 45.455 0.00 0.00 0.00 2.24
329 622 6.522054 TGAAGATGAGTAAAATACCGGATCC 58.478 40.000 9.46 0.00 0.00 3.36
330 623 6.099125 TGAAGATGAGTAAAATACCGGATCCA 59.901 38.462 9.46 0.00 0.00 3.41
342 635 1.967066 CCGGATCCACTAGAGATGCTT 59.033 52.381 13.41 0.00 30.52 3.91
367 660 2.009774 CTCATCCCATTGGACACGTTC 58.990 52.381 3.62 0.00 45.58 3.95
420 713 4.391830 TGTTCTTCGATGAAATGTGTAGGC 59.608 41.667 14.62 1.40 0.00 3.93
421 714 4.471904 TCTTCGATGAAATGTGTAGGCT 57.528 40.909 0.00 0.00 0.00 4.58
422 715 4.433615 TCTTCGATGAAATGTGTAGGCTC 58.566 43.478 0.00 0.00 0.00 4.70
423 716 2.809446 TCGATGAAATGTGTAGGCTCG 58.191 47.619 0.00 0.00 0.00 5.03
425 718 3.379057 TCGATGAAATGTGTAGGCTCGTA 59.621 43.478 0.00 0.00 0.00 3.43
426 719 4.037565 TCGATGAAATGTGTAGGCTCGTAT 59.962 41.667 0.00 0.00 0.00 3.06
428 721 5.918576 CGATGAAATGTGTAGGCTCGTATAA 59.081 40.000 0.00 0.00 0.00 0.98
429 722 6.419710 CGATGAAATGTGTAGGCTCGTATAAA 59.580 38.462 0.00 0.00 0.00 1.40
430 723 6.897259 TGAAATGTGTAGGCTCGTATAAAC 57.103 37.500 0.00 0.00 0.00 2.01
431 724 6.636705 TGAAATGTGTAGGCTCGTATAAACT 58.363 36.000 0.00 0.00 0.00 2.66
432 725 7.101054 TGAAATGTGTAGGCTCGTATAAACTT 58.899 34.615 0.00 0.00 0.00 2.66
433 726 7.604927 TGAAATGTGTAGGCTCGTATAAACTTT 59.395 33.333 0.00 0.00 0.00 2.66
434 727 7.916914 AATGTGTAGGCTCGTATAAACTTTT 57.083 32.000 0.00 0.00 0.00 2.27
435 728 7.916914 ATGTGTAGGCTCGTATAAACTTTTT 57.083 32.000 0.00 0.00 0.00 1.94
460 753 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
461 754 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
462 755 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
463 756 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
464 757 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
465 758 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
466 759 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
467 760 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
468 761 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
469 762 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
470 763 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
471 764 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
472 765 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
473 766 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
474 767 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
478 771 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
479 772 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
480 773 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
481 774 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
482 775 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
483 776 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
484 777 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
485 778 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
486 779 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
487 780 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
488 781 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
489 782 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
490 783 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
491 784 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
492 785 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
493 786 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
494 787 2.163613 CGCGCATACACTCATCCCTATA 59.836 50.000 8.75 0.00 0.00 1.31
495 788 3.366985 CGCGCATACACTCATCCCTATAA 60.367 47.826 8.75 0.00 0.00 0.98
496 789 4.566004 GCGCATACACTCATCCCTATAAA 58.434 43.478 0.30 0.00 0.00 1.40
497 790 4.389077 GCGCATACACTCATCCCTATAAAC 59.611 45.833 0.30 0.00 0.00 2.01
498 791 4.621460 CGCATACACTCATCCCTATAAACG 59.379 45.833 0.00 0.00 0.00 3.60
499 792 4.389077 GCATACACTCATCCCTATAAACGC 59.611 45.833 0.00 0.00 0.00 4.84
500 793 5.538118 CATACACTCATCCCTATAAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
501 794 3.793559 ACACTCATCCCTATAAACGCAC 58.206 45.455 0.00 0.00 0.00 5.34
502 795 3.196901 ACACTCATCCCTATAAACGCACA 59.803 43.478 0.00 0.00 0.00 4.57
503 796 3.555956 CACTCATCCCTATAAACGCACAC 59.444 47.826 0.00 0.00 0.00 3.82
504 797 3.196901 ACTCATCCCTATAAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
505 798 3.527533 TCATCCCTATAAACGCACACAC 58.472 45.455 0.00 0.00 0.00 3.82
506 799 1.999048 TCCCTATAAACGCACACACG 58.001 50.000 0.00 0.00 39.50 4.49
507 800 0.372334 CCCTATAAACGCACACACGC 59.628 55.000 0.00 0.00 36.19 5.34
508 801 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
509 802 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
510 803 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
511 804 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
512 805 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
515 808 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
516 809 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
517 810 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
518 811 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
519 812 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
520 813 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
521 814 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
522 815 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
523 816 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
524 817 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
525 818 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
526 819 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
527 820 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
528 821 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
529 822 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
530 823 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
531 824 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
532 825 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
533 826 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
534 827 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
535 828 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
536 829 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
537 830 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
538 831 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
539 832 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
540 833 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
541 834 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
542 835 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
543 836 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
544 837 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
545 838 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
546 839 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
547 840 1.450491 CTCCGAGAGACTGAGCCGA 60.450 63.158 0.00 0.00 0.00 5.54
548 841 1.711060 CTCCGAGAGACTGAGCCGAC 61.711 65.000 0.00 0.00 0.00 4.79
549 842 2.041115 CCGAGAGACTGAGCCGACA 61.041 63.158 0.00 0.00 0.00 4.35
550 843 1.380403 CCGAGAGACTGAGCCGACAT 61.380 60.000 0.00 0.00 0.00 3.06
551 844 1.300481 CGAGAGACTGAGCCGACATA 58.700 55.000 0.00 0.00 0.00 2.29
552 845 1.876799 CGAGAGACTGAGCCGACATAT 59.123 52.381 0.00 0.00 0.00 1.78
553 846 2.095969 CGAGAGACTGAGCCGACATATC 60.096 54.545 0.00 0.00 0.00 1.63
554 847 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
555 848 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
556 849 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
557 850 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
558 851 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
559 852 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
560 853 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
561 854 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
562 855 3.891366 TGAGCCGACATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
563 856 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
564 857 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
565 858 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
566 859 6.997655 AGCCGACATATCATCTTGAGATTTA 58.002 36.000 0.00 0.00 31.21 1.40
567 860 6.870965 AGCCGACATATCATCTTGAGATTTAC 59.129 38.462 0.00 0.00 31.21 2.01
568 861 6.183360 GCCGACATATCATCTTGAGATTTACG 60.183 42.308 0.00 0.00 31.21 3.18
569 862 7.084486 CCGACATATCATCTTGAGATTTACGA 58.916 38.462 0.00 0.00 31.21 3.43
570 863 7.595130 CCGACATATCATCTTGAGATTTACGAA 59.405 37.037 0.00 0.00 31.21 3.85
571 864 8.634265 CGACATATCATCTTGAGATTTACGAAG 58.366 37.037 0.00 0.00 31.21 3.79
572 865 9.469807 GACATATCATCTTGAGATTTACGAAGT 57.530 33.333 0.00 0.00 37.29 3.01
573 866 9.469807 ACATATCATCTTGAGATTTACGAAGTC 57.530 33.333 0.00 0.00 35.39 3.01
574 867 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
576 869 7.993821 TCATCTTGAGATTTACGAAGTCATC 57.006 36.000 0.00 0.00 35.39 2.92
577 870 6.693113 TCATCTTGAGATTTACGAAGTCATCG 59.307 38.462 0.00 0.00 44.39 3.84
584 877 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
585 878 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
586 879 1.437986 GAAGTCATCGTAGGCGCCT 59.562 57.895 34.85 34.85 38.14 5.52
587 880 0.595310 GAAGTCATCGTAGGCGCCTC 60.595 60.000 36.73 23.04 38.14 4.70
588 881 2.337749 AAGTCATCGTAGGCGCCTCG 62.338 60.000 36.73 32.58 38.14 4.63
589 882 2.827190 TCATCGTAGGCGCCTCGT 60.827 61.111 36.73 21.23 38.14 4.18
590 883 2.353607 CATCGTAGGCGCCTCGTC 60.354 66.667 36.73 22.80 38.14 4.20
591 884 3.950254 ATCGTAGGCGCCTCGTCG 61.950 66.667 36.73 32.16 36.23 5.12
593 886 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
594 887 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
607 900 3.062786 TCGTCGACGAAAACGTCTC 57.937 52.632 36.25 11.12 46.30 3.36
608 901 0.384725 TCGTCGACGAAAACGTCTCC 60.385 55.000 36.25 8.99 46.30 3.71
609 902 0.385223 CGTCGACGAAAACGTCTCCT 60.385 55.000 33.35 0.00 43.02 3.69
610 903 1.325647 GTCGACGAAAACGTCTCCTC 58.674 55.000 17.92 5.01 36.81 3.71
611 904 0.239347 TCGACGAAAACGTCTCCTCC 59.761 55.000 17.92 0.00 36.81 4.30
612 905 0.731855 CGACGAAAACGTCTCCTCCC 60.732 60.000 17.92 0.00 36.81 4.30
613 906 0.316204 GACGAAAACGTCTCCTCCCA 59.684 55.000 14.10 0.00 36.12 4.37
614 907 0.033090 ACGAAAACGTCTCCTCCCAC 59.967 55.000 0.00 0.00 0.00 4.61
615 908 0.317479 CGAAAACGTCTCCTCCCACT 59.683 55.000 0.00 0.00 0.00 4.00
616 909 1.797025 GAAAACGTCTCCTCCCACTG 58.203 55.000 0.00 0.00 0.00 3.66
617 910 1.343465 GAAAACGTCTCCTCCCACTGA 59.657 52.381 0.00 0.00 0.00 3.41
618 911 1.420430 AAACGTCTCCTCCCACTGAA 58.580 50.000 0.00 0.00 0.00 3.02
619 912 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
620 913 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
621 914 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
622 915 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
623 916 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
624 917 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
625 918 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
626 919 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
627 920 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
638 931 4.131376 CGCATCGCTGGAAATCCT 57.869 55.556 0.44 0.00 36.82 3.24
639 932 1.645455 CGCATCGCTGGAAATCCTG 59.355 57.895 0.44 1.39 37.93 3.86
640 933 0.811219 CGCATCGCTGGAAATCCTGA 60.811 55.000 10.20 1.98 37.15 3.86
641 934 1.382522 GCATCGCTGGAAATCCTGAA 58.617 50.000 10.20 0.00 37.15 3.02
642 935 1.745087 GCATCGCTGGAAATCCTGAAA 59.255 47.619 10.20 0.00 37.15 2.69
643 936 2.360165 GCATCGCTGGAAATCCTGAAAT 59.640 45.455 10.20 0.52 37.15 2.17
644 937 3.565482 GCATCGCTGGAAATCCTGAAATA 59.435 43.478 10.20 0.00 37.15 1.40
645 938 4.036734 GCATCGCTGGAAATCCTGAAATAA 59.963 41.667 10.20 0.00 37.15 1.40
646 939 5.450412 GCATCGCTGGAAATCCTGAAATAAA 60.450 40.000 10.20 0.00 37.15 1.40
647 940 6.736794 GCATCGCTGGAAATCCTGAAATAAAT 60.737 38.462 10.20 0.00 37.15 1.40
648 941 6.377327 TCGCTGGAAATCCTGAAATAAATC 57.623 37.500 10.20 0.00 37.15 2.17
649 942 5.299279 TCGCTGGAAATCCTGAAATAAATCC 59.701 40.000 10.20 0.00 37.15 3.01
650 943 5.067674 CGCTGGAAATCCTGAAATAAATCCA 59.932 40.000 10.20 0.00 37.15 3.41
652 945 7.047460 CTGGAAATCCTGAAATAAATCCAGG 57.953 40.000 9.98 0.00 45.65 4.45
662 955 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
663 956 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
664 957 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
665 958 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
666 959 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
667 960 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
668 961 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
669 962 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
670 963 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
671 964 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
672 965 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
673 966 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
674 967 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
675 968 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
676 969 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
677 970 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
678 971 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
679 972 1.813513 CGAGCACCAGGATTTGAACT 58.186 50.000 0.00 0.00 0.00 3.01
680 973 1.734465 CGAGCACCAGGATTTGAACTC 59.266 52.381 0.00 0.00 0.00 3.01
681 974 2.613977 CGAGCACCAGGATTTGAACTCT 60.614 50.000 0.00 0.00 0.00 3.24
682 975 2.746362 GAGCACCAGGATTTGAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
683 976 2.373169 AGCACCAGGATTTGAACTCTGA 59.627 45.455 0.00 0.00 0.00 3.27
684 977 3.009916 AGCACCAGGATTTGAACTCTGAT 59.990 43.478 0.00 0.00 0.00 2.90
685 978 3.128242 GCACCAGGATTTGAACTCTGATG 59.872 47.826 0.00 0.00 0.00 3.07
686 979 3.693085 CACCAGGATTTGAACTCTGATGG 59.307 47.826 0.00 0.00 0.00 3.51
687 980 3.285484 CCAGGATTTGAACTCTGATGGG 58.715 50.000 0.00 0.00 0.00 4.00
688 981 3.308688 CCAGGATTTGAACTCTGATGGGT 60.309 47.826 0.00 0.00 0.00 4.51
689 982 4.338879 CAGGATTTGAACTCTGATGGGTT 58.661 43.478 0.00 0.00 0.00 4.11
690 983 4.157289 CAGGATTTGAACTCTGATGGGTTG 59.843 45.833 0.00 0.00 0.00 3.77
691 984 4.043310 AGGATTTGAACTCTGATGGGTTGA 59.957 41.667 0.00 0.00 0.00 3.18
692 985 4.397417 GGATTTGAACTCTGATGGGTTGAG 59.603 45.833 0.00 0.00 0.00 3.02
693 986 4.705110 TTTGAACTCTGATGGGTTGAGA 57.295 40.909 0.00 0.00 0.00 3.27
694 987 4.705110 TTGAACTCTGATGGGTTGAGAA 57.295 40.909 0.00 0.00 0.00 2.87
695 988 4.916041 TGAACTCTGATGGGTTGAGAAT 57.084 40.909 0.00 0.00 0.00 2.40
696 989 6.373005 TTGAACTCTGATGGGTTGAGAATA 57.627 37.500 0.00 0.00 0.00 1.75
697 990 5.734720 TGAACTCTGATGGGTTGAGAATAC 58.265 41.667 0.00 0.00 0.00 1.89
698 991 4.762289 ACTCTGATGGGTTGAGAATACC 57.238 45.455 0.00 0.00 34.82 2.73
699 992 4.104086 ACTCTGATGGGTTGAGAATACCA 58.896 43.478 0.00 0.00 37.40 3.25
700 993 4.080863 ACTCTGATGGGTTGAGAATACCAC 60.081 45.833 0.00 0.00 37.40 4.16
701 994 4.104086 TCTGATGGGTTGAGAATACCACT 58.896 43.478 0.00 0.00 37.40 4.00
702 995 4.080919 TCTGATGGGTTGAGAATACCACTG 60.081 45.833 0.00 0.00 37.40 3.66
703 996 3.587061 TGATGGGTTGAGAATACCACTGT 59.413 43.478 0.00 0.00 37.40 3.55
704 997 3.695830 TGGGTTGAGAATACCACTGTC 57.304 47.619 0.00 0.00 37.40 3.51
705 998 2.304761 TGGGTTGAGAATACCACTGTCC 59.695 50.000 0.00 0.00 37.40 4.02
706 999 2.304761 GGGTTGAGAATACCACTGTCCA 59.695 50.000 0.00 0.00 37.40 4.02
707 1000 3.335579 GGTTGAGAATACCACTGTCCAC 58.664 50.000 0.00 0.00 35.67 4.02
708 1001 3.335579 GTTGAGAATACCACTGTCCACC 58.664 50.000 0.00 0.00 0.00 4.61
709 1002 2.902608 TGAGAATACCACTGTCCACCT 58.097 47.619 0.00 0.00 0.00 4.00
710 1003 4.055710 TGAGAATACCACTGTCCACCTA 57.944 45.455 0.00 0.00 0.00 3.08
711 1004 4.422057 TGAGAATACCACTGTCCACCTAA 58.578 43.478 0.00 0.00 0.00 2.69
712 1005 4.222145 TGAGAATACCACTGTCCACCTAAC 59.778 45.833 0.00 0.00 0.00 2.34
713 1006 3.518303 AGAATACCACTGTCCACCTAACC 59.482 47.826 0.00 0.00 0.00 2.85
714 1007 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
715 1008 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
716 1009 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
717 1010 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
718 1011 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
719 1012 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
720 1013 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
721 1014 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
722 1015 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
723 1016 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
724 1017 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
725 1018 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
726 1019 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
727 1020 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
728 1021 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
737 1030 3.412722 AACCACAGGTTGATTCGCA 57.587 47.368 0.00 0.00 45.07 5.10
738 1031 1.238439 AACCACAGGTTGATTCGCAG 58.762 50.000 0.00 0.00 45.07 5.18
739 1032 0.606401 ACCACAGGTTGATTCGCAGG 60.606 55.000 0.00 0.00 27.29 4.85
740 1033 1.503542 CACAGGTTGATTCGCAGGC 59.496 57.895 0.00 0.00 0.00 4.85
741 1034 0.957395 CACAGGTTGATTCGCAGGCT 60.957 55.000 0.00 0.00 0.00 4.58
742 1035 0.674895 ACAGGTTGATTCGCAGGCTC 60.675 55.000 0.00 0.00 0.00 4.70
743 1036 1.448540 AGGTTGATTCGCAGGCTCG 60.449 57.895 0.00 0.00 0.00 5.03
744 1037 1.741770 GGTTGATTCGCAGGCTCGT 60.742 57.895 6.32 0.00 0.00 4.18
745 1038 0.459585 GGTTGATTCGCAGGCTCGTA 60.460 55.000 6.32 0.00 0.00 3.43
746 1039 1.571919 GTTGATTCGCAGGCTCGTAT 58.428 50.000 6.32 3.09 0.00 3.06
830 1132 1.875963 GGAACCACATTCGTGCAGG 59.124 57.895 0.00 0.00 42.17 4.85
928 1235 1.971695 CGAAAGCAACCCCCACTCC 60.972 63.158 0.00 0.00 0.00 3.85
1554 1894 4.724516 CTCCAGGAGAGGCAGGAT 57.275 61.111 11.62 0.00 39.13 3.24
1593 1933 4.838486 GAGAGCGACGCCGTGGAG 62.838 72.222 17.79 0.00 38.24 3.86
1741 2081 1.047801 GCAGGAGGAAGAGGAGGATC 58.952 60.000 0.00 0.00 0.00 3.36
1899 2239 2.574006 TCAATGCAGTTGAAGAGGCT 57.426 45.000 8.52 0.00 43.64 4.58
1934 2274 3.690460 AGGAACAGAAGAATGCCGATTT 58.310 40.909 0.00 0.00 0.00 2.17
1968 2308 4.820894 AGTTTTCGGTAGCTCTATGGTT 57.179 40.909 0.00 0.00 0.00 3.67
1974 2314 3.630769 TCGGTAGCTCTATGGTTGTAGTG 59.369 47.826 0.00 0.00 0.00 2.74
1979 2319 3.838317 AGCTCTATGGTTGTAGTGGACAA 59.162 43.478 0.00 0.00 46.03 3.18
2004 2344 2.224499 GGAGGAGAAGGAAGATGCATCC 60.224 54.545 23.06 10.06 37.22 3.51
2016 2356 5.751990 GGAAGATGCATCCAAATTGAATGTC 59.248 40.000 23.06 0.00 36.92 3.06
2064 2404 2.906389 TGCTGAGGAACCACATTCTACT 59.094 45.455 0.00 0.00 37.48 2.57
2065 2405 3.265791 GCTGAGGAACCACATTCTACTG 58.734 50.000 0.00 0.00 37.48 2.74
2070 2410 1.740025 GAACCACATTCTACTGCTGGC 59.260 52.381 0.00 0.00 34.15 4.85
2079 2419 3.313713 TACTGCTGGCGATGCTGCA 62.314 57.895 4.13 4.13 36.82 4.41
2115 2455 3.758755 AAGCATGAGACAAGTGACTCA 57.241 42.857 14.27 14.27 46.98 3.41
2127 2467 4.040952 ACAAGTGACTCAAGCAAGGATAGT 59.959 41.667 0.00 0.00 0.00 2.12
2142 2482 4.884961 AGGATAGTGACTACTCCATGGTT 58.115 43.478 12.58 2.52 38.36 3.67
2211 2551 0.399091 AGGATCTCGGGGAGCATGAA 60.399 55.000 0.00 0.00 30.93 2.57
2283 2623 1.662629 CATAAGAGGCTCAGTGTTGCG 59.337 52.381 18.26 0.00 0.00 4.85
2382 2722 7.031372 GGTAGTGTCGATTGTATTGTCTACAA 58.969 38.462 0.00 0.00 41.05 2.41
2383 2723 7.543172 GGTAGTGTCGATTGTATTGTCTACAAA 59.457 37.037 0.00 0.00 40.32 2.83
2455 2795 4.066646 TGGTTTAGCTGCGATGCTTATA 57.933 40.909 7.84 0.00 43.74 0.98
2633 2982 6.885735 ACGTTTGAACAATTTTCTTTCAGG 57.114 33.333 0.00 0.00 31.11 3.86
2646 2995 4.982241 TCTTTCAGGACATCCTTTCACT 57.018 40.909 0.00 0.00 46.09 3.41
2647 2996 4.899502 TCTTTCAGGACATCCTTTCACTC 58.100 43.478 0.00 0.00 46.09 3.51
2648 2997 4.347876 TCTTTCAGGACATCCTTTCACTCA 59.652 41.667 0.00 0.00 46.09 3.41
2652 3001 2.569404 AGGACATCCTTTCACTCAGGAC 59.431 50.000 0.00 0.00 46.09 3.85
2666 3015 9.429109 TTTCACTCAGGACATACTAATATACCA 57.571 33.333 0.00 0.00 0.00 3.25
2704 3053 6.515272 TGATTTGTATCCTCTTGGCTTTTC 57.485 37.500 0.00 0.00 0.00 2.29
2725 3075 7.552458 TTTCGTAGTCAATAATGTGCATGAT 57.448 32.000 0.00 0.00 0.00 2.45
2733 3083 8.742777 AGTCAATAATGTGCATGATTTTGTACT 58.257 29.630 0.00 3.85 33.87 2.73
2734 3084 8.800972 GTCAATAATGTGCATGATTTTGTACTG 58.199 33.333 0.00 0.00 33.87 2.74
2740 3090 6.324042 TGTGCATGATTTTGTACTGCATAAG 58.676 36.000 6.93 0.00 43.89 1.73
2744 3094 6.808212 GCATGATTTTGTACTGCATAAGTTGT 59.192 34.615 0.00 0.00 40.56 3.32
2753 3103 5.914898 ACTGCATAAGTTGTTATTTCCCC 57.085 39.130 0.00 0.00 34.57 4.81
2758 3108 5.163550 GCATAAGTTGTTATTTCCCCTCACC 60.164 44.000 0.00 0.00 0.00 4.02
2767 3117 1.048601 TTCCCCTCACCGATCTATGC 58.951 55.000 0.00 0.00 0.00 3.14
2801 3151 2.790433 ACGCCAAGCTTTCTCCAATAA 58.210 42.857 0.00 0.00 0.00 1.40
2802 3152 2.488153 ACGCCAAGCTTTCTCCAATAAC 59.512 45.455 0.00 0.00 0.00 1.89
2805 3155 3.507622 GCCAAGCTTTCTCCAATAACAGT 59.492 43.478 0.00 0.00 0.00 3.55
2836 3187 6.613153 AATTAGTGCCTTAGAGTTGAGACT 57.387 37.500 0.00 0.00 39.32 3.24
2853 3204 4.281941 TGAGACTACTGTGACAGCTCAATT 59.718 41.667 13.37 0.00 34.37 2.32
2855 3206 3.070018 ACTACTGTGACAGCTCAATTGC 58.930 45.455 13.37 0.00 34.37 3.56
2872 3226 8.173130 GCTCAATTGCATTATTTGGAAGAAAAG 58.827 33.333 0.00 0.00 39.20 2.27
2895 3249 5.188555 AGAACTATCAACATCTTCAGGCTGA 59.811 40.000 14.43 14.43 0.00 4.26
2929 3283 4.264253 CCTTGTGAATCAGCCATGAGTAA 58.736 43.478 0.00 0.00 39.29 2.24
2930 3284 4.334759 CCTTGTGAATCAGCCATGAGTAAG 59.665 45.833 0.00 0.00 39.29 2.34
2931 3285 3.273434 TGTGAATCAGCCATGAGTAAGC 58.727 45.455 0.00 0.00 39.29 3.09
2932 3286 3.054875 TGTGAATCAGCCATGAGTAAGCT 60.055 43.478 0.00 0.00 39.29 3.74
2940 3294 4.911390 AGCCATGAGTAAGCTGTAACTTT 58.089 39.130 0.00 0.00 34.99 2.66
2947 3301 9.813080 CATGAGTAAGCTGTAACTTTTAACTTC 57.187 33.333 0.00 0.00 0.00 3.01
2948 3302 9.780186 ATGAGTAAGCTGTAACTTTTAACTTCT 57.220 29.630 0.00 0.00 0.00 2.85
2949 3303 9.609346 TGAGTAAGCTGTAACTTTTAACTTCTT 57.391 29.630 0.00 0.00 0.00 2.52
2968 3336 5.552870 TCTTAGAACCAGAGCTTGTTTCT 57.447 39.130 11.36 11.36 41.00 2.52
3011 3379 7.543868 CCAAAGACTAGTTCAGTTCATCTAGTG 59.456 40.741 0.00 0.00 41.73 2.74
3033 3401 8.596781 AGTGTGATAACAGTAATAGAAGAGGT 57.403 34.615 0.00 0.00 0.00 3.85
3034 3402 8.688151 AGTGTGATAACAGTAATAGAAGAGGTC 58.312 37.037 0.00 0.00 0.00 3.85
3036 3404 9.201989 TGTGATAACAGTAATAGAAGAGGTCAT 57.798 33.333 0.00 0.00 0.00 3.06
3048 3416 6.882768 AGAAGAGGTCATGGTATTCTTTCT 57.117 37.500 0.00 0.00 0.00 2.52
3049 3417 6.883744 AGAAGAGGTCATGGTATTCTTTCTC 58.116 40.000 0.00 0.00 0.00 2.87
3050 3418 6.671779 AGAAGAGGTCATGGTATTCTTTCTCT 59.328 38.462 0.00 0.00 0.00 3.10
3051 3419 7.841729 AGAAGAGGTCATGGTATTCTTTCTCTA 59.158 37.037 0.00 0.00 0.00 2.43
3052 3420 7.979786 AGAGGTCATGGTATTCTTTCTCTAA 57.020 36.000 0.00 0.00 0.00 2.10
3053 3421 8.017418 AGAGGTCATGGTATTCTTTCTCTAAG 57.983 38.462 0.00 0.00 35.04 2.18
3054 3422 7.841729 AGAGGTCATGGTATTCTTTCTCTAAGA 59.158 37.037 0.00 0.00 41.11 2.10
3055 3423 8.560124 AGGTCATGGTATTCTTTCTCTAAGAT 57.440 34.615 0.00 0.00 42.32 2.40
3056 3424 9.661954 AGGTCATGGTATTCTTTCTCTAAGATA 57.338 33.333 0.00 0.00 42.32 1.98
3068 3436 8.424918 TCTTTCTCTAAGATATTCCACCACATC 58.575 37.037 0.00 0.00 37.96 3.06
3078 3446 9.561069 AGATATTCCACCACATCTTTAATACAC 57.439 33.333 0.00 0.00 0.00 2.90
3079 3447 9.561069 GATATTCCACCACATCTTTAATACACT 57.439 33.333 0.00 0.00 0.00 3.55
3082 3450 7.490657 TCCACCACATCTTTAATACACTAGT 57.509 36.000 0.00 0.00 0.00 2.57
3083 3451 8.598202 TCCACCACATCTTTAATACACTAGTA 57.402 34.615 0.00 0.00 34.10 1.82
3084 3452 8.692710 TCCACCACATCTTTAATACACTAGTAG 58.307 37.037 0.00 0.00 32.86 2.57
3085 3453 8.692710 CCACCACATCTTTAATACACTAGTAGA 58.307 37.037 3.59 0.00 32.86 2.59
3147 3572 9.765295 AGGTCTGTTTATTACTAACCTCTTCTA 57.235 33.333 0.00 0.00 37.64 2.10
3178 3603 4.044336 TGTTTTCAGCATGTCACTTTGG 57.956 40.909 0.00 0.00 37.40 3.28
3249 3688 3.882888 TGCGGATTAACATCTTTGATCCC 59.117 43.478 3.05 0.00 34.18 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.345760 CCTGCTCCTTGCGCCATTT 61.346 57.895 4.18 0.00 46.63 2.32
52 53 2.045634 ATGTGCATGCTCCAGCGT 60.046 55.556 20.33 2.76 45.83 5.07
56 57 1.679641 CACCCATGTGCATGCTCCA 60.680 57.895 20.33 15.66 37.49 3.86
58 59 0.171903 GTTCACCCATGTGCATGCTC 59.828 55.000 20.33 16.39 42.46 4.26
85 86 0.171903 ATCAAAGATGCGGTGCAAGC 59.828 50.000 8.33 8.33 43.62 4.01
87 88 0.810648 GGATCAAAGATGCGGTGCAA 59.189 50.000 0.00 0.00 43.62 4.08
121 122 3.869272 CATGCTCGGTCGCTTGGC 61.869 66.667 0.00 0.00 33.05 4.52
124 125 2.046892 AAGCATGCTCGGTCGCTT 60.047 55.556 22.93 0.00 39.80 4.68
168 169 2.283388 TACGGCTTCGTCCCCAGT 60.283 61.111 0.00 0.00 44.73 4.00
208 209 0.248702 CGCGAGCTCCTACTCCTTTC 60.249 60.000 8.47 0.00 32.79 2.62
209 210 1.810532 CGCGAGCTCCTACTCCTTT 59.189 57.895 8.47 0.00 32.79 3.11
210 211 3.515611 CGCGAGCTCCTACTCCTT 58.484 61.111 8.47 0.00 32.79 3.36
228 229 2.300152 TGAGGGAGTTGTAGAGCACTTG 59.700 50.000 0.00 0.00 0.00 3.16
230 231 2.310779 TGAGGGAGTTGTAGAGCACT 57.689 50.000 0.00 0.00 0.00 4.40
291 292 2.827800 TCTTCATCCTCGCCATCATC 57.172 50.000 0.00 0.00 0.00 2.92
292 293 2.636403 TCATCTTCATCCTCGCCATCAT 59.364 45.455 0.00 0.00 0.00 2.45
300 301 6.647067 CCGGTATTTTACTCATCTTCATCCTC 59.353 42.308 0.00 0.00 0.00 3.71
302 303 6.522054 TCCGGTATTTTACTCATCTTCATCC 58.478 40.000 0.00 0.00 0.00 3.51
317 318 4.021016 GCATCTCTAGTGGATCCGGTATTT 60.021 45.833 7.39 0.00 0.00 1.40
367 660 6.644592 TGAAAAGTTTGAGACCAAAACACTTG 59.355 34.615 2.28 0.00 43.18 3.16
435 728 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
436 729 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
437 730 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
438 731 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
439 732 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
440 733 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
441 734 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
442 735 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
443 736 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
444 737 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
445 738 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
446 739 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
447 740 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
448 741 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
449 742 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
450 743 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
451 744 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
452 745 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
453 746 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
454 747 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
455 748 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
456 749 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
457 750 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
458 751 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
459 752 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
462 755 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
463 756 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
464 757 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
465 758 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
466 759 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
467 760 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
468 761 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
469 762 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
470 763 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
471 764 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
472 765 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
473 766 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
474 767 2.751166 ATAGGGATGAGTGTATGCGC 57.249 50.000 0.00 0.00 0.00 6.09
475 768 4.621460 CGTTTATAGGGATGAGTGTATGCG 59.379 45.833 0.00 0.00 0.00 4.73
476 769 4.389077 GCGTTTATAGGGATGAGTGTATGC 59.611 45.833 0.00 0.00 0.00 3.14
477 770 5.405571 GTGCGTTTATAGGGATGAGTGTATG 59.594 44.000 0.00 0.00 0.00 2.39
478 771 5.069914 TGTGCGTTTATAGGGATGAGTGTAT 59.930 40.000 0.00 0.00 0.00 2.29
479 772 4.403113 TGTGCGTTTATAGGGATGAGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
480 773 3.196901 TGTGCGTTTATAGGGATGAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
481 774 3.555956 GTGTGCGTTTATAGGGATGAGTG 59.444 47.826 0.00 0.00 0.00 3.51
482 775 3.196901 TGTGTGCGTTTATAGGGATGAGT 59.803 43.478 0.00 0.00 0.00 3.41
483 776 3.555956 GTGTGTGCGTTTATAGGGATGAG 59.444 47.826 0.00 0.00 0.00 2.90
484 777 3.527533 GTGTGTGCGTTTATAGGGATGA 58.472 45.455 0.00 0.00 0.00 2.92
485 778 2.284150 CGTGTGTGCGTTTATAGGGATG 59.716 50.000 0.00 0.00 0.00 3.51
486 779 2.546778 CGTGTGTGCGTTTATAGGGAT 58.453 47.619 0.00 0.00 0.00 3.85
487 780 1.999048 CGTGTGTGCGTTTATAGGGA 58.001 50.000 0.00 0.00 0.00 4.20
488 781 0.372334 GCGTGTGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
489 782 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
490 783 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
491 784 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
492 785 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
493 786 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
494 787 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
495 788 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
498 791 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
499 792 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
500 793 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
501 794 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
502 795 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
503 796 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
504 797 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
505 798 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
506 799 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
507 800 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
508 801 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
509 802 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
510 803 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
511 804 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
512 805 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
513 806 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
514 807 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
515 808 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
516 809 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
517 810 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
518 811 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
519 812 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
520 813 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
521 814 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
522 815 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
523 816 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
524 817 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
525 818 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
526 819 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
527 820 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
528 821 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
529 822 1.450491 TCGGCTCAGTCTCTCGGAG 60.450 63.158 0.00 0.00 40.44 4.63
530 823 1.745864 GTCGGCTCAGTCTCTCGGA 60.746 63.158 0.00 0.00 0.00 4.55
531 824 1.380403 ATGTCGGCTCAGTCTCTCGG 61.380 60.000 0.00 0.00 0.00 4.63
532 825 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
533 826 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
534 827 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
535 828 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
536 829 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
537 830 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
538 831 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
539 832 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
540 833 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
541 834 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
542 835 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
543 836 6.183360 CGTAAATCTCAAGATGATATGTCGGC 60.183 42.308 0.00 0.00 34.49 5.54
544 837 7.084486 TCGTAAATCTCAAGATGATATGTCGG 58.916 38.462 0.00 0.00 34.49 4.79
545 838 8.507470 TTCGTAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
546 839 9.469807 ACTTCGTAAATCTCAAGATGATATGTC 57.530 33.333 0.00 0.00 34.49 3.06
547 840 9.469807 GACTTCGTAAATCTCAAGATGATATGT 57.530 33.333 0.00 0.00 34.49 2.29
548 841 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
550 843 9.684448 GATGACTTCGTAAATCTCAAGATGATA 57.316 33.333 0.00 0.00 34.49 2.15
551 844 7.380870 CGATGACTTCGTAAATCTCAAGATGAT 59.619 37.037 2.72 0.00 43.01 2.45
552 845 6.693113 CGATGACTTCGTAAATCTCAAGATGA 59.307 38.462 2.72 0.00 43.01 2.92
553 846 6.861158 CGATGACTTCGTAAATCTCAAGATG 58.139 40.000 2.72 0.00 43.01 2.90
568 861 0.595310 GAGGCGCCTACGATGACTTC 60.595 60.000 32.97 9.38 43.93 3.01
569 862 1.437986 GAGGCGCCTACGATGACTT 59.562 57.895 32.97 2.04 43.93 3.01
570 863 2.835705 CGAGGCGCCTACGATGACT 61.836 63.158 32.97 3.02 43.93 3.41
571 864 2.353607 CGAGGCGCCTACGATGAC 60.354 66.667 32.97 14.51 43.93 3.06
572 865 2.827190 ACGAGGCGCCTACGATGA 60.827 61.111 37.37 0.00 43.93 2.92
573 866 2.353607 GACGAGGCGCCTACGATG 60.354 66.667 37.37 24.97 43.93 3.84
574 867 3.950254 CGACGAGGCGCCTACGAT 61.950 66.667 37.37 26.68 43.93 3.73
576 869 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
597 890 1.343465 TCAGTGGGAGGAGACGTTTTC 59.657 52.381 0.00 0.00 0.00 2.29
598 891 1.420430 TCAGTGGGAGGAGACGTTTT 58.580 50.000 0.00 0.00 0.00 2.43
599 892 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
600 893 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
601 894 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
602 895 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
603 896 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
604 897 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
605 898 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
606 899 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
607 900 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
608 901 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
609 902 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
610 903 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
621 914 0.811219 TCAGGATTTCCAGCGATGCG 60.811 55.000 0.00 0.00 38.89 4.73
622 915 1.382522 TTCAGGATTTCCAGCGATGC 58.617 50.000 0.00 0.00 38.89 3.91
623 916 5.756195 TTATTTCAGGATTTCCAGCGATG 57.244 39.130 0.00 0.00 38.89 3.84
624 917 6.015940 GGATTTATTTCAGGATTTCCAGCGAT 60.016 38.462 0.00 0.00 38.89 4.58
625 918 5.299279 GGATTTATTTCAGGATTTCCAGCGA 59.701 40.000 0.00 0.00 38.89 4.93
626 919 5.067674 TGGATTTATTTCAGGATTTCCAGCG 59.932 40.000 0.00 0.00 38.89 5.18
627 920 6.469782 TGGATTTATTTCAGGATTTCCAGC 57.530 37.500 0.00 0.00 38.89 4.85
636 929 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
637 930 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
638 931 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
639 932 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
640 933 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
641 934 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
642 935 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
643 936 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
644 937 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
645 938 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
646 939 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
647 940 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
648 941 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
649 942 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
650 943 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
651 944 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
652 945 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
653 946 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
654 947 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
655 948 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
656 949 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
657 950 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
658 951 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
659 952 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
660 953 1.734465 GAGTTCAAATCCTGGTGCTCG 59.266 52.381 0.00 0.00 0.00 5.03
661 954 2.746362 CAGAGTTCAAATCCTGGTGCTC 59.254 50.000 0.00 0.00 0.00 4.26
662 955 2.373169 TCAGAGTTCAAATCCTGGTGCT 59.627 45.455 0.00 0.00 0.00 4.40
663 956 2.783135 TCAGAGTTCAAATCCTGGTGC 58.217 47.619 0.00 0.00 0.00 5.01
664 957 3.693085 CCATCAGAGTTCAAATCCTGGTG 59.307 47.826 0.00 0.00 37.47 4.17
665 958 3.308688 CCCATCAGAGTTCAAATCCTGGT 60.309 47.826 0.00 0.00 0.00 4.00
666 959 3.285484 CCCATCAGAGTTCAAATCCTGG 58.715 50.000 0.00 0.00 0.00 4.45
667 960 3.960571 ACCCATCAGAGTTCAAATCCTG 58.039 45.455 0.00 0.00 0.00 3.86
668 961 4.043310 TCAACCCATCAGAGTTCAAATCCT 59.957 41.667 0.00 0.00 0.00 3.24
669 962 4.335416 TCAACCCATCAGAGTTCAAATCC 58.665 43.478 0.00 0.00 0.00 3.01
670 963 5.248640 TCTCAACCCATCAGAGTTCAAATC 58.751 41.667 0.00 0.00 0.00 2.17
671 964 5.246981 TCTCAACCCATCAGAGTTCAAAT 57.753 39.130 0.00 0.00 0.00 2.32
672 965 4.705110 TCTCAACCCATCAGAGTTCAAA 57.295 40.909 0.00 0.00 0.00 2.69
673 966 4.705110 TTCTCAACCCATCAGAGTTCAA 57.295 40.909 0.00 0.00 0.00 2.69
674 967 4.916041 ATTCTCAACCCATCAGAGTTCA 57.084 40.909 0.00 0.00 0.00 3.18
675 968 5.119694 GGTATTCTCAACCCATCAGAGTTC 58.880 45.833 0.00 0.00 0.00 3.01
676 969 4.536090 TGGTATTCTCAACCCATCAGAGTT 59.464 41.667 0.00 0.00 36.06 3.01
677 970 4.080863 GTGGTATTCTCAACCCATCAGAGT 60.081 45.833 0.00 0.00 36.06 3.24
678 971 4.163078 AGTGGTATTCTCAACCCATCAGAG 59.837 45.833 0.00 0.00 36.06 3.35
679 972 4.080919 CAGTGGTATTCTCAACCCATCAGA 60.081 45.833 0.00 0.00 36.06 3.27
680 973 4.194640 CAGTGGTATTCTCAACCCATCAG 58.805 47.826 0.00 0.00 36.06 2.90
681 974 3.587061 ACAGTGGTATTCTCAACCCATCA 59.413 43.478 0.00 0.00 36.06 3.07
682 975 4.192317 GACAGTGGTATTCTCAACCCATC 58.808 47.826 0.00 0.00 36.06 3.51
683 976 3.054361 GGACAGTGGTATTCTCAACCCAT 60.054 47.826 0.00 0.00 36.06 4.00
684 977 2.304761 GGACAGTGGTATTCTCAACCCA 59.695 50.000 0.00 0.00 36.06 4.51
685 978 2.304761 TGGACAGTGGTATTCTCAACCC 59.695 50.000 0.00 0.00 36.06 4.11
686 979 3.335579 GTGGACAGTGGTATTCTCAACC 58.664 50.000 0.00 0.00 37.53 3.77
687 980 3.008049 AGGTGGACAGTGGTATTCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
688 981 3.248024 AGGTGGACAGTGGTATTCTCAA 58.752 45.455 0.00 0.00 0.00 3.02
689 982 2.902608 AGGTGGACAGTGGTATTCTCA 58.097 47.619 0.00 0.00 0.00 3.27
690 983 4.382793 GGTTAGGTGGACAGTGGTATTCTC 60.383 50.000 0.00 0.00 0.00 2.87
691 984 3.518303 GGTTAGGTGGACAGTGGTATTCT 59.482 47.826 0.00 0.00 0.00 2.40
692 985 3.262405 TGGTTAGGTGGACAGTGGTATTC 59.738 47.826 0.00 0.00 0.00 1.75
693 986 3.253220 TGGTTAGGTGGACAGTGGTATT 58.747 45.455 0.00 0.00 0.00 1.89
694 987 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
695 988 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
696 989 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
697 990 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
698 991 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
699 992 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
700 993 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
701 994 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
702 995 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
703 996 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
704 997 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
705 998 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
706 999 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
707 1000 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
708 1001 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
709 1002 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
710 1003 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
720 1013 0.606401 CCTGCGAATCAACCTGTGGT 60.606 55.000 0.00 0.00 37.65 4.16
721 1014 1.926511 GCCTGCGAATCAACCTGTGG 61.927 60.000 0.00 0.00 0.00 4.17
722 1015 0.957395 AGCCTGCGAATCAACCTGTG 60.957 55.000 0.00 0.00 0.00 3.66
723 1016 0.674895 GAGCCTGCGAATCAACCTGT 60.675 55.000 0.00 0.00 0.00 4.00
724 1017 1.699656 CGAGCCTGCGAATCAACCTG 61.700 60.000 0.00 0.00 0.00 4.00
725 1018 1.448540 CGAGCCTGCGAATCAACCT 60.449 57.895 0.00 0.00 0.00 3.50
726 1019 0.459585 TACGAGCCTGCGAATCAACC 60.460 55.000 0.00 0.00 34.83 3.77
727 1020 1.571919 ATACGAGCCTGCGAATCAAC 58.428 50.000 0.00 0.00 34.83 3.18
728 1021 3.446310 TTATACGAGCCTGCGAATCAA 57.554 42.857 0.00 0.00 34.83 2.57
729 1022 3.120792 GTTTATACGAGCCTGCGAATCA 58.879 45.455 0.00 0.00 34.83 2.57
730 1023 3.381949 AGTTTATACGAGCCTGCGAATC 58.618 45.455 0.00 0.00 34.83 2.52
731 1024 3.454371 AGTTTATACGAGCCTGCGAAT 57.546 42.857 0.00 0.00 34.83 3.34
732 1025 2.927477 CAAGTTTATACGAGCCTGCGAA 59.073 45.455 0.00 0.00 34.83 4.70
733 1026 2.164827 TCAAGTTTATACGAGCCTGCGA 59.835 45.455 0.00 0.00 34.83 5.10
734 1027 2.536365 TCAAGTTTATACGAGCCTGCG 58.464 47.619 0.00 0.00 37.29 5.18
735 1028 4.728021 GCTTTCAAGTTTATACGAGCCTGC 60.728 45.833 0.00 0.00 0.00 4.85
736 1029 4.201822 GGCTTTCAAGTTTATACGAGCCTG 60.202 45.833 3.93 0.00 43.79 4.85
737 1030 3.939592 GGCTTTCAAGTTTATACGAGCCT 59.060 43.478 3.93 0.00 43.79 4.58
738 1031 3.064958 GGGCTTTCAAGTTTATACGAGCC 59.935 47.826 2.56 2.56 45.82 4.70
739 1032 3.242316 CGGGCTTTCAAGTTTATACGAGC 60.242 47.826 0.00 0.00 0.00 5.03
740 1033 4.178540 TCGGGCTTTCAAGTTTATACGAG 58.821 43.478 0.00 0.00 0.00 4.18
741 1034 4.191033 TCGGGCTTTCAAGTTTATACGA 57.809 40.909 0.00 0.00 0.00 3.43
742 1035 4.932268 TTCGGGCTTTCAAGTTTATACG 57.068 40.909 0.00 0.00 0.00 3.06
743 1036 6.084277 CAGTTTCGGGCTTTCAAGTTTATAC 58.916 40.000 0.00 0.00 0.00 1.47
744 1037 5.335348 GCAGTTTCGGGCTTTCAAGTTTATA 60.335 40.000 0.00 0.00 0.00 0.98
745 1038 4.558697 GCAGTTTCGGGCTTTCAAGTTTAT 60.559 41.667 0.00 0.00 0.00 1.40
746 1039 3.243267 GCAGTTTCGGGCTTTCAAGTTTA 60.243 43.478 0.00 0.00 0.00 2.01
830 1132 2.440980 GGGATGTCTTGGGCTGGC 60.441 66.667 0.00 0.00 0.00 4.85
868 1174 2.819595 CGATGGTCCCACTTGCGG 60.820 66.667 0.00 0.00 0.00 5.69
928 1235 1.841663 CGTGTGCTTTCTTCGTGGGG 61.842 60.000 0.00 0.00 0.00 4.96
1422 1762 0.525668 CGAAGCGGCTGTAGTACCTG 60.526 60.000 1.81 0.00 0.00 4.00
1593 1933 3.017581 AGCCTGTCCACCATCCCC 61.018 66.667 0.00 0.00 0.00 4.81
1741 2081 0.979709 TCATCCACCTCCCAGCTCAG 60.980 60.000 0.00 0.00 0.00 3.35
1899 2239 2.237143 CTGTTCCTTATCCAGAGCACCA 59.763 50.000 0.00 0.00 0.00 4.17
1934 2274 0.952010 GAAAACTTCCGGCTGCGGTA 60.952 55.000 0.00 0.00 0.00 4.02
1968 2308 1.431633 TCCTCCTCCTTGTCCACTACA 59.568 52.381 0.00 0.00 35.88 2.74
1974 2314 1.199615 CCTTCTCCTCCTCCTTGTCC 58.800 60.000 0.00 0.00 0.00 4.02
1979 2319 2.959171 GCATCTTCCTTCTCCTCCTCCT 60.959 54.545 0.00 0.00 0.00 3.69
1980 2320 1.416030 GCATCTTCCTTCTCCTCCTCC 59.584 57.143 0.00 0.00 0.00 4.30
1981 2321 2.114616 TGCATCTTCCTTCTCCTCCTC 58.885 52.381 0.00 0.00 0.00 3.71
2004 2344 7.804600 TCACTTGATTCTTCGACATTCAATTTG 59.195 33.333 0.00 0.00 0.00 2.32
2016 2356 6.630443 CAGTTTTCTTGTCACTTGATTCTTCG 59.370 38.462 0.00 0.00 0.00 3.79
2070 2410 0.247576 CTTCTTTCGCTGCAGCATCG 60.248 55.000 36.03 21.31 42.21 3.84
2079 2419 1.239347 GCTTTGTCCCTTCTTTCGCT 58.761 50.000 0.00 0.00 0.00 4.93
2081 2421 2.813754 TCATGCTTTGTCCCTTCTTTCG 59.186 45.455 0.00 0.00 0.00 3.46
2115 2455 4.353777 TGGAGTAGTCACTATCCTTGCTT 58.646 43.478 12.09 0.00 34.21 3.91
2127 2467 5.330233 TGTCTAGAAACCATGGAGTAGTCA 58.670 41.667 21.47 13.02 0.00 3.41
2142 2482 0.879090 TCGCTGTTCGCTGTCTAGAA 59.121 50.000 0.00 0.00 38.27 2.10
2211 2551 1.305718 AGCGCTCCCCTTCTTCTCT 60.306 57.895 2.64 0.00 0.00 3.10
2264 2604 1.406069 CCGCAACACTGAGCCTCTTAT 60.406 52.381 0.00 0.00 0.00 1.73
2283 2623 2.094649 ACTCAAATCCTCGTCGTCTTCC 60.095 50.000 0.00 0.00 0.00 3.46
2455 2795 8.038944 ACTTGAGTTTACACACGTATCCATAAT 58.961 33.333 0.00 0.00 0.00 1.28
2501 2841 1.127213 GCAAATTGACGCATTGCCAAG 59.873 47.619 2.41 0.00 42.70 3.61
2606 2955 8.077836 TGAAAGAAAATTGTTCAAACGTTTGT 57.922 26.923 33.42 16.72 39.18 2.83
2610 2959 6.530181 GTCCTGAAAGAAAATTGTTCAAACGT 59.470 34.615 0.00 0.00 34.07 3.99
2611 2960 6.529829 TGTCCTGAAAGAAAATTGTTCAAACG 59.470 34.615 0.00 0.00 34.07 3.60
2633 2982 3.685139 TGTCCTGAGTGAAAGGATGTC 57.315 47.619 0.00 0.00 45.47 3.06
2666 3015 9.574516 GGATACAAATCAATGAACCTAGGTAAT 57.425 33.333 16.67 9.57 33.41 1.89
2670 3019 7.512992 AGAGGATACAAATCAATGAACCTAGG 58.487 38.462 7.41 7.41 41.41 3.02
2679 3028 7.486407 AAAAGCCAAGAGGATACAAATCAAT 57.514 32.000 0.00 0.00 41.41 2.57
2704 3053 7.697710 ACAAAATCATGCACATTATTGACTACG 59.302 33.333 9.53 0.00 0.00 3.51
2725 3075 9.685828 GGAAATAACAACTTATGCAGTACAAAA 57.314 29.630 0.00 0.00 32.94 2.44
2733 3083 5.417580 GTGAGGGGAAATAACAACTTATGCA 59.582 40.000 0.00 0.00 0.00 3.96
2734 3084 5.163550 GGTGAGGGGAAATAACAACTTATGC 60.164 44.000 0.00 0.00 0.00 3.14
2740 3090 3.062122 TCGGTGAGGGGAAATAACAAC 57.938 47.619 0.00 0.00 0.00 3.32
2744 3094 4.262894 GCATAGATCGGTGAGGGGAAATAA 60.263 45.833 4.79 0.00 0.00 1.40
2753 3103 3.186001 GCATGAAAGCATAGATCGGTGAG 59.814 47.826 0.00 0.00 32.27 3.51
2767 3117 3.061161 GCTTGGCGTTTAATGCATGAAAG 59.939 43.478 9.63 6.99 0.00 2.62
2780 3130 1.620822 ATTGGAGAAAGCTTGGCGTT 58.379 45.000 0.00 0.00 32.28 4.84
2782 3132 2.487762 TGTTATTGGAGAAAGCTTGGCG 59.512 45.455 0.00 0.00 0.00 5.69
2784 3134 4.082571 CCACTGTTATTGGAGAAAGCTTGG 60.083 45.833 0.00 0.00 36.02 3.61
2801 3151 5.179452 AGGCACTAATTTGTATCCACTGT 57.821 39.130 11.13 0.00 36.02 3.55
2802 3152 7.047891 TCTAAGGCACTAATTTGTATCCACTG 58.952 38.462 11.13 3.57 38.49 3.66
2805 3155 7.195374 ACTCTAAGGCACTAATTTGTATCCA 57.805 36.000 11.13 0.00 38.49 3.41
2836 3187 3.124578 TGCAATTGAGCTGTCACAGTA 57.875 42.857 10.34 0.00 33.43 2.74
2872 3226 5.423015 TCAGCCTGAAGATGTTGATAGTTC 58.577 41.667 0.00 0.00 0.00 3.01
2895 3249 7.765819 GGCTGATTCACAAGGCTAAATTTATTT 59.234 33.333 0.00 0.00 0.00 1.40
2906 3260 1.404391 CTCATGGCTGATTCACAAGGC 59.596 52.381 0.00 0.00 0.00 4.35
2929 3283 9.053840 GGTTCTAAGAAGTTAAAAGTTACAGCT 57.946 33.333 0.00 0.00 0.00 4.24
2930 3284 8.833493 TGGTTCTAAGAAGTTAAAAGTTACAGC 58.167 33.333 0.00 0.00 0.00 4.40
2940 3294 6.827727 ACAAGCTCTGGTTCTAAGAAGTTAA 58.172 36.000 0.00 0.00 0.00 2.01
2952 3306 4.401925 AGCATAAGAAACAAGCTCTGGTT 58.598 39.130 0.00 0.00 37.80 3.67
2968 3336 4.766373 TCTTTGGCATTGTCAAGAGCATAA 59.234 37.500 3.61 6.44 0.00 1.90
3011 3379 9.469807 CATGACCTCTTCTATTACTGTTATCAC 57.530 37.037 0.00 0.00 0.00 3.06
3046 3414 7.921041 AAGATGTGGTGGAATATCTTAGAGA 57.079 36.000 0.00 0.00 37.92 3.10
3052 3420 9.561069 GTGTATTAAAGATGTGGTGGAATATCT 57.439 33.333 0.00 0.00 0.00 1.98
3053 3421 9.561069 AGTGTATTAAAGATGTGGTGGAATATC 57.439 33.333 0.00 0.00 0.00 1.63
3056 3424 8.548877 ACTAGTGTATTAAAGATGTGGTGGAAT 58.451 33.333 0.00 0.00 0.00 3.01
3076 3444 8.892723 TGCAATTCCAATTAACATCTACTAGTG 58.107 33.333 5.39 0.00 0.00 2.74
3077 3445 9.632638 ATGCAATTCCAATTAACATCTACTAGT 57.367 29.630 0.00 0.00 0.00 2.57
3082 3450 9.806203 CAGAAATGCAATTCCAATTAACATCTA 57.194 29.630 10.92 0.00 33.67 1.98
3083 3451 7.767198 CCAGAAATGCAATTCCAATTAACATCT 59.233 33.333 10.92 0.00 33.67 2.90
3084 3452 7.765360 TCCAGAAATGCAATTCCAATTAACATC 59.235 33.333 10.92 0.00 33.67 3.06
3085 3453 7.550196 GTCCAGAAATGCAATTCCAATTAACAT 59.450 33.333 10.92 0.00 33.67 2.71
3086 3454 6.873076 GTCCAGAAATGCAATTCCAATTAACA 59.127 34.615 10.92 0.00 33.67 2.41
3087 3455 6.873076 TGTCCAGAAATGCAATTCCAATTAAC 59.127 34.615 10.92 2.81 33.67 2.01
3088 3456 7.002250 TGTCCAGAAATGCAATTCCAATTAA 57.998 32.000 10.92 0.00 33.67 1.40
3089 3457 6.211184 ACTGTCCAGAAATGCAATTCCAATTA 59.789 34.615 10.92 0.00 33.67 1.40
3147 3572 2.318908 TGCTGAAAACATGCCCTCTTT 58.681 42.857 0.00 0.00 0.00 2.52
3234 3673 4.054369 AGGGGATGGGATCAAAGATGTTA 58.946 43.478 0.00 0.00 0.00 2.41
3249 3688 4.644498 ACAATTTTCTTTTGCAGGGGATG 58.356 39.130 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.