Multiple sequence alignment - TraesCS2A01G139900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G139900 chr2A 100.000 4928 0 0 1 4928 84945478 84940551 0.000000e+00 9101.0
1 TraesCS2A01G139900 chr2D 93.437 3093 125 31 1860 4926 83934730 83931690 0.000000e+00 4516.0
2 TraesCS2A01G139900 chr2D 89.368 696 34 17 634 1324 83935871 83935211 0.000000e+00 839.0
3 TraesCS2A01G139900 chr2D 93.363 226 9 6 1573 1795 83935035 83934813 3.680000e-86 329.0
4 TraesCS2A01G139900 chr2B 94.963 2462 70 24 2477 4928 136156656 136154239 0.000000e+00 3810.0
5 TraesCS2A01G139900 chr2B 92.348 771 42 8 539 1308 136158552 136157798 0.000000e+00 1081.0
6 TraesCS2A01G139900 chr2B 86.095 525 31 19 1884 2388 136157252 136156750 1.210000e-145 527.0
7 TraesCS2A01G139900 chr2B 92.059 340 22 4 204 541 136158940 136158604 1.610000e-129 473.0
8 TraesCS2A01G139900 chr2B 85.360 403 28 18 1412 1795 136157768 136157378 5.980000e-104 388.0
9 TraesCS2A01G139900 chr2B 90.291 103 9 1 211 312 136159401 136159299 3.090000e-27 134.0
10 TraesCS2A01G139900 chr7A 78.738 428 79 11 3440 3858 546262198 546261774 4.860000e-70 276.0
11 TraesCS2A01G139900 chr7B 83.486 218 31 5 3148 3362 468406435 468406220 1.080000e-46 198.0
12 TraesCS2A01G139900 chr7D 82.569 218 33 5 3148 3362 450245835 450245620 2.340000e-43 187.0
13 TraesCS2A01G139900 chr3D 76.211 227 45 7 1093 1312 86939041 86938817 1.450000e-20 111.0
14 TraesCS2A01G139900 chr3D 75.309 162 35 5 3149 3308 307567876 307567718 6.840000e-09 73.1
15 TraesCS2A01G139900 chr3B 76.498 217 44 6 1093 1304 136803425 136803211 1.450000e-20 111.0
16 TraesCS2A01G139900 chr3A 76.498 217 44 6 1093 1304 103621775 103621561 1.450000e-20 111.0
17 TraesCS2A01G139900 chr3A 77.160 162 32 5 3149 3308 426653749 426653907 6.790000e-14 89.8
18 TraesCS2A01G139900 chr1B 76.582 158 29 8 3155 3308 1424405 1424252 4.090000e-11 80.5
19 TraesCS2A01G139900 chr1B 75.625 160 34 5 3151 3308 1472224 1472380 1.900000e-09 75.0
20 TraesCS2A01G139900 chr1D 76.101 159 26 11 3155 3307 2119779 2119627 6.840000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G139900 chr2A 84940551 84945478 4927 True 9101.000000 9101 100.000 1 4928 1 chr2A.!!$R1 4927
1 TraesCS2A01G139900 chr2D 83931690 83935871 4181 True 1894.666667 4516 92.056 634 4926 3 chr2D.!!$R1 4292
2 TraesCS2A01G139900 chr2B 136154239 136159401 5162 True 1068.833333 3810 90.186 204 4928 6 chr2B.!!$R1 4724


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.111266 GCGAGCGTACAAACTGTGTG 60.111 55.0 0.00 0.0 41.89 3.82 F
1463 1787 0.108615 CAACTTCCATCGTCGCCTCT 60.109 55.0 0.00 0.0 0.00 3.69 F
1526 1850 0.251916 TCAGCAGTTCCATTACCGGG 59.748 55.0 6.32 0.0 0.00 5.73 F
3364 3818 0.031314 TCAAAACCGTACGCACCGTA 59.969 50.0 10.49 0.0 41.54 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 2148 0.034337 AGCGAAAGAAGCAACCGGTA 59.966 50.0 8.00 0.0 37.01 4.02 R
2480 2906 0.030638 GCCAAACAACACGCACAGAT 59.969 50.0 0.00 0.0 0.00 2.90 R
3412 3868 0.389391 ATAGCACGTCGCCATTAGCT 59.611 50.0 6.39 0.0 44.04 3.32 R
4395 4859 0.112412 AGGCAACCCATTTCTTCCGT 59.888 50.0 0.00 0.0 37.17 4.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.468532 CGTGGCGAGCGTACAAAC 59.531 61.111 0.00 0.00 0.00 2.93
25 26 2.019951 CGTGGCGAGCGTACAAACT 61.020 57.895 0.00 0.00 0.00 2.66
26 27 1.491563 GTGGCGAGCGTACAAACTG 59.508 57.895 0.00 0.00 0.00 3.16
28 29 1.218875 TGGCGAGCGTACAAACTGTG 61.219 55.000 0.00 0.00 0.00 3.66
29 30 1.219522 GGCGAGCGTACAAACTGTGT 61.220 55.000 0.00 0.00 44.82 3.72
30 31 0.111266 GCGAGCGTACAAACTGTGTG 60.111 55.000 0.00 0.00 41.89 3.82
31 32 1.205657 CGAGCGTACAAACTGTGTGT 58.794 50.000 8.90 8.90 41.89 3.72
32 33 1.071502 CGAGCGTACAAACTGTGTGTG 60.072 52.381 13.82 0.00 41.89 3.82
33 34 1.931172 GAGCGTACAAACTGTGTGTGT 59.069 47.619 13.82 5.68 41.89 3.72
34 35 1.663643 AGCGTACAAACTGTGTGTGTG 59.336 47.619 13.82 6.92 41.89 3.82
36 37 2.786360 GCGTACAAACTGTGTGTGTGTG 60.786 50.000 13.82 2.26 45.97 3.82
39 40 2.226330 ACAAACTGTGTGTGTGTGTGT 58.774 42.857 2.08 0.00 44.87 3.72
40 41 2.031245 ACAAACTGTGTGTGTGTGTGTG 60.031 45.455 2.08 0.00 44.87 3.82
41 42 1.890876 AACTGTGTGTGTGTGTGTGT 58.109 45.000 0.00 0.00 0.00 3.72
42 43 1.155889 ACTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
43 44 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
44 45 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
46 47 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
48 49 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
49 50 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
50 51 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
52 53 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
53 54 1.950216 TGTGTGTGTGTGTGTGTTTGT 59.050 42.857 0.00 0.00 0.00 2.83
54 55 2.359214 TGTGTGTGTGTGTGTGTTTGTT 59.641 40.909 0.00 0.00 0.00 2.83
55 56 3.181486 TGTGTGTGTGTGTGTGTTTGTTT 60.181 39.130 0.00 0.00 0.00 2.83
56 57 3.181377 GTGTGTGTGTGTGTGTTTGTTTG 59.819 43.478 0.00 0.00 0.00 2.93
57 58 3.181486 TGTGTGTGTGTGTGTTTGTTTGT 60.181 39.130 0.00 0.00 0.00 2.83
58 59 3.799420 GTGTGTGTGTGTGTTTGTTTGTT 59.201 39.130 0.00 0.00 0.00 2.83
60 61 4.870426 TGTGTGTGTGTGTTTGTTTGTTTT 59.130 33.333 0.00 0.00 0.00 2.43
61 62 5.193936 GTGTGTGTGTGTTTGTTTGTTTTG 58.806 37.500 0.00 0.00 0.00 2.44
62 63 4.207599 GTGTGTGTGTTTGTTTGTTTTGC 58.792 39.130 0.00 0.00 0.00 3.68
63 64 4.025313 GTGTGTGTGTTTGTTTGTTTTGCT 60.025 37.500 0.00 0.00 0.00 3.91
64 65 4.572389 TGTGTGTGTTTGTTTGTTTTGCTT 59.428 33.333 0.00 0.00 0.00 3.91
65 66 5.065218 TGTGTGTGTTTGTTTGTTTTGCTTT 59.935 32.000 0.00 0.00 0.00 3.51
67 68 5.525378 TGTGTGTTTGTTTGTTTTGCTTTCT 59.475 32.000 0.00 0.00 0.00 2.52
68 69 6.037610 TGTGTGTTTGTTTGTTTTGCTTTCTT 59.962 30.769 0.00 0.00 0.00 2.52
69 70 6.573357 GTGTGTTTGTTTGTTTTGCTTTCTTC 59.427 34.615 0.00 0.00 0.00 2.87
70 71 6.481644 TGTGTTTGTTTGTTTTGCTTTCTTCT 59.518 30.769 0.00 0.00 0.00 2.85
71 72 7.011857 TGTGTTTGTTTGTTTTGCTTTCTTCTT 59.988 29.630 0.00 0.00 0.00 2.52
73 74 8.491950 TGTTTGTTTGTTTTGCTTTCTTCTTAC 58.508 29.630 0.00 0.00 0.00 2.34
74 75 7.589574 TTGTTTGTTTTGCTTTCTTCTTACC 57.410 32.000 0.00 0.00 0.00 2.85
76 77 6.811170 TGTTTGTTTTGCTTTCTTCTTACCTG 59.189 34.615 0.00 0.00 0.00 4.00
77 78 6.524101 TTGTTTTGCTTTCTTCTTACCTGT 57.476 33.333 0.00 0.00 0.00 4.00
78 79 6.524101 TGTTTTGCTTTCTTCTTACCTGTT 57.476 33.333 0.00 0.00 0.00 3.16
79 80 6.930731 TGTTTTGCTTTCTTCTTACCTGTTT 58.069 32.000 0.00 0.00 0.00 2.83
80 81 7.382898 TGTTTTGCTTTCTTCTTACCTGTTTT 58.617 30.769 0.00 0.00 0.00 2.43
81 82 7.875554 TGTTTTGCTTTCTTCTTACCTGTTTTT 59.124 29.630 0.00 0.00 0.00 1.94
82 83 8.380644 GTTTTGCTTTCTTCTTACCTGTTTTTC 58.619 33.333 0.00 0.00 0.00 2.29
83 84 5.816919 TGCTTTCTTCTTACCTGTTTTTCG 58.183 37.500 0.00 0.00 0.00 3.46
84 85 5.212934 GCTTTCTTCTTACCTGTTTTTCGG 58.787 41.667 0.00 0.00 0.00 4.30
86 87 6.613755 TTTCTTCTTACCTGTTTTTCGGAG 57.386 37.500 0.00 0.00 0.00 4.63
87 88 5.286267 TCTTCTTACCTGTTTTTCGGAGT 57.714 39.130 0.00 0.00 0.00 3.85
89 90 3.645884 TCTTACCTGTTTTTCGGAGTCG 58.354 45.455 0.00 0.00 37.82 4.18
90 91 3.318839 TCTTACCTGTTTTTCGGAGTCGA 59.681 43.478 0.00 0.00 44.44 4.20
92 93 3.947910 ACCTGTTTTTCGGAGTCGATA 57.052 42.857 0.00 0.00 45.51 2.92
94 95 3.257624 ACCTGTTTTTCGGAGTCGATAGT 59.742 43.478 0.00 0.00 45.51 2.12
95 96 4.460382 ACCTGTTTTTCGGAGTCGATAGTA 59.540 41.667 0.00 0.00 45.51 1.82
97 98 4.737054 TGTTTTTCGGAGTCGATAGTACC 58.263 43.478 0.00 0.00 45.51 3.34
98 99 4.218200 TGTTTTTCGGAGTCGATAGTACCA 59.782 41.667 0.00 0.00 45.51 3.25
99 100 4.361451 TTTTCGGAGTCGATAGTACCAC 57.639 45.455 0.00 0.00 45.51 4.16
100 101 2.996249 TCGGAGTCGATAGTACCACT 57.004 50.000 0.00 0.00 40.88 4.00
101 102 3.272574 TCGGAGTCGATAGTACCACTT 57.727 47.619 0.00 0.00 40.88 3.16
103 104 2.941064 CGGAGTCGATAGTACCACTTCA 59.059 50.000 0.00 0.00 39.00 3.02
104 105 3.376234 CGGAGTCGATAGTACCACTTCAA 59.624 47.826 0.00 0.00 39.00 2.69
106 107 4.639310 GGAGTCGATAGTACCACTTCAAGA 59.361 45.833 0.00 0.00 37.40 3.02
107 108 5.125097 GGAGTCGATAGTACCACTTCAAGAA 59.875 44.000 0.00 0.00 37.40 2.52
108 109 6.349944 GGAGTCGATAGTACCACTTCAAGAAA 60.350 42.308 0.00 0.00 37.40 2.52
110 111 7.612677 AGTCGATAGTACCACTTCAAGAAATT 58.387 34.615 0.00 0.00 37.40 1.82
116 117 6.293698 AGTACCACTTCAAGAAATTAACCGT 58.706 36.000 0.00 0.00 0.00 4.83
117 118 5.684550 ACCACTTCAAGAAATTAACCGTC 57.315 39.130 0.00 0.00 0.00 4.79
118 119 5.374071 ACCACTTCAAGAAATTAACCGTCT 58.626 37.500 0.00 0.00 0.00 4.18
119 120 6.527423 ACCACTTCAAGAAATTAACCGTCTA 58.473 36.000 0.00 0.00 0.00 2.59
120 121 6.993902 ACCACTTCAAGAAATTAACCGTCTAA 59.006 34.615 0.00 0.00 0.00 2.10
121 122 7.172703 ACCACTTCAAGAAATTAACCGTCTAAG 59.827 37.037 0.00 0.00 0.00 2.18
122 123 7.172703 CCACTTCAAGAAATTAACCGTCTAAGT 59.827 37.037 0.00 0.00 0.00 2.24
123 124 8.557029 CACTTCAAGAAATTAACCGTCTAAGTT 58.443 33.333 0.00 0.00 0.00 2.66
130 131 9.715121 AGAAATTAACCGTCTAAGTTATTGACA 57.285 29.630 3.90 0.00 30.17 3.58
134 135 8.836268 TTAACCGTCTAAGTTATTGACATTGT 57.164 30.769 0.00 0.00 30.17 2.71
136 137 6.460781 ACCGTCTAAGTTATTGACATTGTCA 58.539 36.000 15.41 15.41 41.09 3.58
137 138 6.590292 ACCGTCTAAGTTATTGACATTGTCAG 59.410 38.462 18.27 5.94 43.69 3.51
141 142 9.155975 GTCTAAGTTATTGACATTGTCAGTCAT 57.844 33.333 16.94 11.78 44.66 3.06
144 145 8.846943 AAGTTATTGACATTGTCAGTCATACA 57.153 30.769 16.94 3.10 44.66 2.29
148 149 6.407475 TTGACATTGTCAGTCATACAATCG 57.593 37.500 18.27 0.00 43.84 3.34
149 150 4.329801 TGACATTGTCAGTCATACAATCGC 59.670 41.667 15.41 0.00 43.84 4.58
152 153 6.106003 ACATTGTCAGTCATACAATCGCTAA 58.894 36.000 0.00 0.00 43.84 3.09
153 154 6.256539 ACATTGTCAGTCATACAATCGCTAAG 59.743 38.462 0.00 0.00 43.84 2.18
154 155 5.576447 TGTCAGTCATACAATCGCTAAGA 57.424 39.130 0.00 0.00 0.00 2.10
155 156 6.149129 TGTCAGTCATACAATCGCTAAGAT 57.851 37.500 0.00 0.00 42.43 2.40
157 158 5.403766 GTCAGTCATACAATCGCTAAGATGG 59.596 44.000 0.00 0.00 40.02 3.51
158 159 5.301805 TCAGTCATACAATCGCTAAGATGGA 59.698 40.000 0.00 0.00 40.02 3.41
159 160 6.015095 TCAGTCATACAATCGCTAAGATGGAT 60.015 38.462 0.00 0.00 40.02 3.41
160 161 6.648310 CAGTCATACAATCGCTAAGATGGATT 59.352 38.462 0.00 0.00 40.02 3.01
161 162 7.814587 CAGTCATACAATCGCTAAGATGGATTA 59.185 37.037 0.00 0.00 40.02 1.75
162 163 8.031864 AGTCATACAATCGCTAAGATGGATTAG 58.968 37.037 0.00 0.00 40.02 1.73
163 164 8.029522 GTCATACAATCGCTAAGATGGATTAGA 58.970 37.037 0.00 0.00 40.02 2.10
164 165 8.246871 TCATACAATCGCTAAGATGGATTAGAG 58.753 37.037 0.00 0.00 40.02 2.43
165 166 5.788450 ACAATCGCTAAGATGGATTAGAGG 58.212 41.667 0.00 0.00 40.02 3.69
166 167 5.174395 CAATCGCTAAGATGGATTAGAGGG 58.826 45.833 0.00 0.00 40.02 4.30
167 168 3.845860 TCGCTAAGATGGATTAGAGGGT 58.154 45.455 0.00 0.00 35.19 4.34
168 169 4.994282 TCGCTAAGATGGATTAGAGGGTA 58.006 43.478 0.00 0.00 35.19 3.69
169 170 5.010933 TCGCTAAGATGGATTAGAGGGTAG 58.989 45.833 0.00 0.00 35.19 3.18
170 171 5.010933 CGCTAAGATGGATTAGAGGGTAGA 58.989 45.833 0.00 0.00 35.19 2.59
172 173 5.106078 GCTAAGATGGATTAGAGGGTAGACG 60.106 48.000 0.00 0.00 35.19 4.18
176 177 6.975949 AGATGGATTAGAGGGTAGACGATAT 58.024 40.000 0.00 0.00 0.00 1.63
177 178 8.103660 AGATGGATTAGAGGGTAGACGATATA 57.896 38.462 0.00 0.00 0.00 0.86
178 179 8.215050 AGATGGATTAGAGGGTAGACGATATAG 58.785 40.741 0.00 0.00 0.00 1.31
184 185 4.923516 AGGGTAGACGATATAGCCTACA 57.076 45.455 10.56 0.00 46.65 2.74
185 186 5.252586 AGGGTAGACGATATAGCCTACAA 57.747 43.478 10.56 0.00 46.65 2.41
186 187 5.828871 AGGGTAGACGATATAGCCTACAAT 58.171 41.667 10.56 0.00 46.65 2.71
187 188 6.254522 AGGGTAGACGATATAGCCTACAATT 58.745 40.000 10.56 0.00 46.65 2.32
188 189 6.377712 AGGGTAGACGATATAGCCTACAATTC 59.622 42.308 10.56 0.00 46.65 2.17
189 190 6.405619 GGGTAGACGATATAGCCTACAATTCC 60.406 46.154 10.56 0.81 37.72 3.01
191 192 7.555554 GGTAGACGATATAGCCTACAATTCCTA 59.444 40.741 10.56 0.00 34.68 2.94
193 194 6.946583 AGACGATATAGCCTACAATTCCTACA 59.053 38.462 0.00 0.00 0.00 2.74
194 195 7.616150 AGACGATATAGCCTACAATTCCTACAT 59.384 37.037 0.00 0.00 0.00 2.29
195 196 7.548097 ACGATATAGCCTACAATTCCTACATG 58.452 38.462 0.00 0.00 0.00 3.21
196 197 7.396339 ACGATATAGCCTACAATTCCTACATGA 59.604 37.037 0.00 0.00 0.00 3.07
197 198 8.417106 CGATATAGCCTACAATTCCTACATGAT 58.583 37.037 0.00 0.00 0.00 2.45
198 199 9.539825 GATATAGCCTACAATTCCTACATGATG 57.460 37.037 0.00 0.00 0.00 3.07
199 200 4.392940 AGCCTACAATTCCTACATGATGC 58.607 43.478 0.00 0.00 0.00 3.91
201 202 4.823989 GCCTACAATTCCTACATGATGCTT 59.176 41.667 0.00 0.00 0.00 3.91
204 205 7.220030 CCTACAATTCCTACATGATGCTTACT 58.780 38.462 0.00 0.00 0.00 2.24
205 206 8.367911 CCTACAATTCCTACATGATGCTTACTA 58.632 37.037 0.00 0.00 0.00 1.82
206 207 9.197694 CTACAATTCCTACATGATGCTTACTAC 57.802 37.037 0.00 0.00 0.00 2.73
208 209 8.924303 ACAATTCCTACATGATGCTTACTACTA 58.076 33.333 0.00 0.00 0.00 1.82
209 210 9.197694 CAATTCCTACATGATGCTTACTACTAC 57.802 37.037 0.00 0.00 0.00 2.73
210 211 8.713708 ATTCCTACATGATGCTTACTACTACT 57.286 34.615 0.00 0.00 0.00 2.57
211 212 9.809395 ATTCCTACATGATGCTTACTACTACTA 57.191 33.333 0.00 0.00 0.00 1.82
212 213 8.618702 TCCTACATGATGCTTACTACTACTAC 57.381 38.462 0.00 0.00 0.00 2.73
213 214 8.438373 TCCTACATGATGCTTACTACTACTACT 58.562 37.037 0.00 0.00 0.00 2.57
214 215 9.722184 CCTACATGATGCTTACTACTACTACTA 57.278 37.037 0.00 0.00 0.00 1.82
232 491 6.702329 ACTACTACAAAAGATGAGGTGGAAG 58.298 40.000 0.00 0.00 0.00 3.46
263 522 3.000727 CCTTTGACGACTTATCACCACC 58.999 50.000 0.00 0.00 0.00 4.61
272 531 3.548770 ACTTATCACCACCAGCATCATG 58.451 45.455 0.00 0.00 0.00 3.07
337 596 5.178623 TGTCAATCGTAGAATGTTGTTCCAC 59.821 40.000 0.00 0.00 43.58 4.02
342 601 1.523758 AGAATGTTGTTCCACTCGGC 58.476 50.000 0.00 0.00 0.00 5.54
359 618 1.474330 GGCCCTAACCATGTTTCCAG 58.526 55.000 0.00 0.00 0.00 3.86
364 623 2.747446 CCTAACCATGTTTCCAGAACCG 59.253 50.000 0.00 0.00 0.00 4.44
394 653 3.455619 CACGAGTGTGGAAACTAATGC 57.544 47.619 0.00 0.00 42.59 3.56
423 682 1.072965 CTTGCTCCTTGACCTTGACCT 59.927 52.381 0.00 0.00 0.00 3.85
424 683 2.024176 TGCTCCTTGACCTTGACCTA 57.976 50.000 0.00 0.00 0.00 3.08
425 684 2.551270 TGCTCCTTGACCTTGACCTAT 58.449 47.619 0.00 0.00 0.00 2.57
429 688 5.013704 TGCTCCTTGACCTTGACCTATTTTA 59.986 40.000 0.00 0.00 0.00 1.52
430 689 5.586643 GCTCCTTGACCTTGACCTATTTTAG 59.413 44.000 0.00 0.00 0.00 1.85
431 690 6.576442 GCTCCTTGACCTTGACCTATTTTAGA 60.576 42.308 0.00 0.00 0.00 2.10
439 698 8.258850 ACCTTGACCTATTTTAGATCGGAATA 57.741 34.615 0.00 0.00 0.00 1.75
473 732 2.677337 GTGGTGCATGCTTTGTGTTTTT 59.323 40.909 20.33 0.00 0.00 1.94
474 733 2.935201 TGGTGCATGCTTTGTGTTTTTC 59.065 40.909 20.33 0.00 0.00 2.29
491 752 8.442384 TGTGTTTTTCTTTTCTTTTCATTGCTC 58.558 29.630 0.00 0.00 0.00 4.26
554 869 2.322161 CGACGTACGTGATGGAGTTTT 58.678 47.619 28.16 0.00 37.22 2.43
575 890 1.597027 CACCGCCTCCGTCAACTTT 60.597 57.895 0.00 0.00 0.00 2.66
620 935 1.340465 CTCCGTCGTCAATTTCGCG 59.660 57.895 0.00 0.00 0.00 5.87
690 1013 1.078988 GCCGTTAATCCACACCCGA 60.079 57.895 0.00 0.00 0.00 5.14
709 1033 4.510340 CCCGATTAACTTTAACCTCCATCG 59.490 45.833 0.00 0.00 0.00 3.84
710 1034 4.025145 CCGATTAACTTTAACCTCCATCGC 60.025 45.833 0.00 0.00 0.00 4.58
711 1035 4.569162 CGATTAACTTTAACCTCCATCGCA 59.431 41.667 0.00 0.00 0.00 5.10
720 1044 1.227234 CTCCATCGCACCATACGCA 60.227 57.895 0.00 0.00 0.00 5.24
741 1065 1.210931 CGCACACCTGGATTTGCAG 59.789 57.895 0.00 0.00 34.49 4.41
846 1170 2.437359 CCACCACCAGCTAGCAGC 60.437 66.667 18.83 0.00 42.84 5.25
1006 1330 0.683973 CTAGCTAGGAGCCATGTGGG 59.316 60.000 13.32 0.00 43.77 4.61
1025 1349 4.712425 GTCGTCGTGGTCGTGGGG 62.712 72.222 0.00 0.00 38.33 4.96
1263 1587 4.530857 CACGACATCCTCCCCCGC 62.531 72.222 0.00 0.00 0.00 6.13
1319 1643 2.320805 GGTACGCATACGCTTATCGA 57.679 50.000 8.33 0.00 45.53 3.59
1322 1646 1.978542 ACGCATACGCTTATCGATCC 58.021 50.000 0.00 0.00 45.53 3.36
1335 1659 5.065218 GCTTATCGATCCATCAACAACACTT 59.935 40.000 0.00 0.00 0.00 3.16
1339 1663 3.425359 CGATCCATCAACAACACTTGCTC 60.425 47.826 0.00 0.00 0.00 4.26
1340 1664 1.872952 TCCATCAACAACACTTGCTCG 59.127 47.619 0.00 0.00 0.00 5.03
1341 1665 1.872952 CCATCAACAACACTTGCTCGA 59.127 47.619 0.00 0.00 0.00 4.04
1342 1666 2.485426 CCATCAACAACACTTGCTCGAT 59.515 45.455 0.00 0.00 0.00 3.59
1343 1667 3.058016 CCATCAACAACACTTGCTCGATT 60.058 43.478 0.00 0.00 0.00 3.34
1344 1668 4.539870 CATCAACAACACTTGCTCGATTT 58.460 39.130 0.00 0.00 0.00 2.17
1345 1669 4.630894 TCAACAACACTTGCTCGATTTT 57.369 36.364 0.00 0.00 0.00 1.82
1346 1670 4.350346 TCAACAACACTTGCTCGATTTTG 58.650 39.130 0.00 0.00 0.00 2.44
1349 1673 2.975851 CAACACTTGCTCGATTTTGCTC 59.024 45.455 0.00 0.00 0.00 4.26
1350 1674 1.537202 ACACTTGCTCGATTTTGCTCC 59.463 47.619 0.00 0.00 0.00 4.70
1353 1677 1.815003 CTTGCTCGATTTTGCTCCCTT 59.185 47.619 0.00 0.00 0.00 3.95
1355 1679 1.168714 GCTCGATTTTGCTCCCTTGT 58.831 50.000 0.00 0.00 0.00 3.16
1356 1680 1.131315 GCTCGATTTTGCTCCCTTGTC 59.869 52.381 0.00 0.00 0.00 3.18
1357 1681 2.704572 CTCGATTTTGCTCCCTTGTCT 58.295 47.619 0.00 0.00 0.00 3.41
1358 1682 2.675348 CTCGATTTTGCTCCCTTGTCTC 59.325 50.000 0.00 0.00 0.00 3.36
1359 1683 2.303022 TCGATTTTGCTCCCTTGTCTCT 59.697 45.455 0.00 0.00 0.00 3.10
1360 1684 3.077359 CGATTTTGCTCCCTTGTCTCTT 58.923 45.455 0.00 0.00 0.00 2.85
1361 1685 3.126000 CGATTTTGCTCCCTTGTCTCTTC 59.874 47.826 0.00 0.00 0.00 2.87
1362 1686 3.864789 TTTTGCTCCCTTGTCTCTTCT 57.135 42.857 0.00 0.00 0.00 2.85
1363 1687 3.864789 TTTGCTCCCTTGTCTCTTCTT 57.135 42.857 0.00 0.00 0.00 2.52
1364 1688 3.409026 TTGCTCCCTTGTCTCTTCTTC 57.591 47.619 0.00 0.00 0.00 2.87
1365 1689 2.614259 TGCTCCCTTGTCTCTTCTTCT 58.386 47.619 0.00 0.00 0.00 2.85
1368 1692 4.221703 TGCTCCCTTGTCTCTTCTTCTTAG 59.778 45.833 0.00 0.00 0.00 2.18
1370 1694 3.515901 TCCCTTGTCTCTTCTTCTTAGCC 59.484 47.826 0.00 0.00 0.00 3.93
1381 1705 2.832129 TCTTCTTAGCCGGTGACAATCT 59.168 45.455 1.90 0.00 0.00 2.40
1382 1706 2.961526 TCTTAGCCGGTGACAATCTC 57.038 50.000 1.90 0.00 0.00 2.75
1383 1707 2.457598 TCTTAGCCGGTGACAATCTCT 58.542 47.619 1.90 0.00 0.00 3.10
1384 1708 2.427453 TCTTAGCCGGTGACAATCTCTC 59.573 50.000 1.90 0.00 0.00 3.20
1385 1709 2.145397 TAGCCGGTGACAATCTCTCT 57.855 50.000 1.90 0.00 0.00 3.10
1386 1710 0.820871 AGCCGGTGACAATCTCTCTC 59.179 55.000 1.90 0.00 0.00 3.20
1387 1711 0.820871 GCCGGTGACAATCTCTCTCT 59.179 55.000 1.90 0.00 0.00 3.10
1388 1712 1.202359 GCCGGTGACAATCTCTCTCTC 60.202 57.143 1.90 0.00 0.00 3.20
1389 1713 2.374184 CCGGTGACAATCTCTCTCTCT 58.626 52.381 0.00 0.00 0.00 3.10
1390 1714 2.757868 CCGGTGACAATCTCTCTCTCTT 59.242 50.000 0.00 0.00 0.00 2.85
1391 1715 3.181491 CCGGTGACAATCTCTCTCTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
1392 1716 3.694072 CGGTGACAATCTCTCTCTCTTCT 59.306 47.826 0.00 0.00 0.00 2.85
1393 1717 4.157656 CGGTGACAATCTCTCTCTCTTCTT 59.842 45.833 0.00 0.00 0.00 2.52
1394 1718 5.650543 GGTGACAATCTCTCTCTCTTCTTC 58.349 45.833 0.00 0.00 0.00 2.87
1395 1719 5.418840 GGTGACAATCTCTCTCTCTTCTTCT 59.581 44.000 0.00 0.00 0.00 2.85
1396 1720 6.071391 GGTGACAATCTCTCTCTCTTCTTCTT 60.071 42.308 0.00 0.00 0.00 2.52
1397 1721 7.029563 GTGACAATCTCTCTCTCTTCTTCTTC 58.970 42.308 0.00 0.00 0.00 2.87
1398 1722 6.947733 TGACAATCTCTCTCTCTTCTTCTTCT 59.052 38.462 0.00 0.00 0.00 2.85
1399 1723 7.451255 TGACAATCTCTCTCTCTTCTTCTTCTT 59.549 37.037 0.00 0.00 0.00 2.52
1400 1724 7.830739 ACAATCTCTCTCTCTTCTTCTTCTTC 58.169 38.462 0.00 0.00 0.00 2.87
1401 1725 7.671398 ACAATCTCTCTCTCTTCTTCTTCTTCT 59.329 37.037 0.00 0.00 0.00 2.85
1402 1726 8.526147 CAATCTCTCTCTCTTCTTCTTCTTCTT 58.474 37.037 0.00 0.00 0.00 2.52
1403 1727 7.687941 TCTCTCTCTCTTCTTCTTCTTCTTC 57.312 40.000 0.00 0.00 0.00 2.87
1404 1728 7.461749 TCTCTCTCTCTTCTTCTTCTTCTTCT 58.538 38.462 0.00 0.00 0.00 2.85
1405 1729 7.944554 TCTCTCTCTCTTCTTCTTCTTCTTCTT 59.055 37.037 0.00 0.00 0.00 2.52
1406 1730 8.110860 TCTCTCTCTTCTTCTTCTTCTTCTTC 57.889 38.462 0.00 0.00 0.00 2.87
1407 1731 7.944554 TCTCTCTCTTCTTCTTCTTCTTCTTCT 59.055 37.037 0.00 0.00 0.00 2.85
1408 1732 8.477419 TCTCTCTTCTTCTTCTTCTTCTTCTT 57.523 34.615 0.00 0.00 0.00 2.52
1409 1733 8.576442 TCTCTCTTCTTCTTCTTCTTCTTCTTC 58.424 37.037 0.00 0.00 0.00 2.87
1410 1734 8.477419 TCTCTTCTTCTTCTTCTTCTTCTTCT 57.523 34.615 0.00 0.00 0.00 2.85
1443 1767 5.519722 TCTTCTTCCAATTTTGCTTTCGAC 58.480 37.500 0.00 0.00 0.00 4.20
1447 1771 3.712187 TCCAATTTTGCTTTCGACCAAC 58.288 40.909 0.00 0.00 0.00 3.77
1453 1777 2.270352 TGCTTTCGACCAACTTCCAT 57.730 45.000 0.00 0.00 0.00 3.41
1459 1783 1.683790 CGACCAACTTCCATCGTCGC 61.684 60.000 0.00 0.00 39.72 5.19
1460 1784 1.359459 GACCAACTTCCATCGTCGCC 61.359 60.000 0.00 0.00 0.00 5.54
1461 1785 1.079127 CCAACTTCCATCGTCGCCT 60.079 57.895 0.00 0.00 0.00 5.52
1462 1786 1.084370 CCAACTTCCATCGTCGCCTC 61.084 60.000 0.00 0.00 0.00 4.70
1463 1787 0.108615 CAACTTCCATCGTCGCCTCT 60.109 55.000 0.00 0.00 0.00 3.69
1464 1788 1.134367 CAACTTCCATCGTCGCCTCTA 59.866 52.381 0.00 0.00 0.00 2.43
1465 1789 1.025812 ACTTCCATCGTCGCCTCTAG 58.974 55.000 0.00 0.00 0.00 2.43
1469 1793 0.519519 CCATCGTCGCCTCTAGCTAG 59.480 60.000 15.01 15.01 40.39 3.42
1472 1796 1.160946 TCGTCGCCTCTAGCTAGCAG 61.161 60.000 18.83 12.27 40.39 4.24
1495 1819 1.263484 GGCTCAGTTCATGCATCGATG 59.737 52.381 21.27 21.27 0.00 3.84
1502 1826 5.125900 TCAGTTCATGCATCGATGGAATTTT 59.874 36.000 23.87 4.17 0.00 1.82
1503 1827 6.318396 TCAGTTCATGCATCGATGGAATTTTA 59.682 34.615 23.87 4.96 0.00 1.52
1506 1830 8.849168 AGTTCATGCATCGATGGAATTTTATTA 58.151 29.630 23.87 0.00 0.00 0.98
1509 1833 9.012161 TCATGCATCGATGGAATTTTATTATCA 57.988 29.630 23.87 9.56 0.00 2.15
1510 1834 9.285770 CATGCATCGATGGAATTTTATTATCAG 57.714 33.333 23.87 0.00 0.00 2.90
1511 1835 7.307694 TGCATCGATGGAATTTTATTATCAGC 58.692 34.615 26.00 6.51 0.00 4.26
1520 1844 8.980596 TGGAATTTTATTATCAGCAGTTCCATT 58.019 29.630 0.00 0.00 38.05 3.16
1525 1849 2.332063 ATCAGCAGTTCCATTACCGG 57.668 50.000 0.00 0.00 0.00 5.28
1526 1850 0.251916 TCAGCAGTTCCATTACCGGG 59.748 55.000 6.32 0.00 0.00 5.73
1527 1851 0.251916 CAGCAGTTCCATTACCGGGA 59.748 55.000 6.32 0.00 0.00 5.14
1528 1852 1.134098 CAGCAGTTCCATTACCGGGAT 60.134 52.381 6.32 0.00 33.63 3.85
1529 1853 1.134098 AGCAGTTCCATTACCGGGATG 60.134 52.381 6.32 9.84 33.63 3.51
1531 1855 2.561569 CAGTTCCATTACCGGGATGAC 58.438 52.381 18.48 11.14 33.63 3.06
1535 1871 4.472108 AGTTCCATTACCGGGATGACTTTA 59.528 41.667 18.48 0.00 33.63 1.85
1537 1873 5.031066 TCCATTACCGGGATGACTTTAAG 57.969 43.478 18.48 0.00 0.00 1.85
1569 1905 3.725740 CGTGCATTTGCGATTAGAATTCC 59.274 43.478 0.65 0.00 45.83 3.01
1592 1930 6.039270 TCCGCATATGAGGAAATAAACAAAGG 59.961 38.462 24.11 0.00 41.08 3.11
1650 1988 1.076705 GGAAAGGAGGGGACATGCC 60.077 63.158 0.00 0.00 0.00 4.40
1698 2036 7.704899 ACAAGAACTGAGGATTTTTAAAAACCG 59.295 33.333 15.35 8.92 0.00 4.44
1702 2040 4.623002 TGAGGATTTTTAAAAACCGTGGC 58.377 39.130 15.35 10.86 0.00 5.01
1823 2161 8.372459 TGACATAAATATATACCGGTTGCTTCT 58.628 33.333 15.04 0.00 0.00 2.85
1871 2249 2.611974 AATCACTAGCAAAAACGGCG 57.388 45.000 4.80 4.80 36.08 6.46
1880 2266 1.058979 GCAAAAACGGCGTATGCAATG 59.941 47.619 28.68 17.40 45.35 2.82
1907 2303 0.817634 TCGCAAGTCAAACCTGGTGG 60.818 55.000 0.00 0.00 37.85 4.61
1926 2322 0.466189 GGATGTTGGCCATGATCCGT 60.466 55.000 21.91 4.92 32.56 4.69
1934 2330 1.004277 GCCATGATCCGTCGATCGTC 61.004 60.000 15.94 8.82 46.89 4.20
1976 2372 4.259056 GCGATAATGCGACTAGATTAAGCG 60.259 45.833 0.00 0.81 0.00 4.68
1980 2376 1.269102 TGCGACTAGATTAAGCGAGCC 60.269 52.381 0.00 0.00 0.00 4.70
2023 2419 1.601663 CGAGGAGAATCGCAGATCCAC 60.602 57.143 0.00 0.00 45.12 4.02
2025 2425 1.218230 GGAGAATCGCAGATCCACGC 61.218 60.000 0.27 0.00 45.12 5.34
2055 2455 2.477525 GCAGCTTGCTTAATCTGTGCTC 60.478 50.000 0.00 0.00 40.96 4.26
2103 2513 4.789075 GCAGCACATTGCCAGCCG 62.789 66.667 0.00 0.00 46.52 5.52
2256 2674 9.513727 GGTGATTAGTTAGTGTAGTTAGTTAGC 57.486 37.037 0.00 0.00 0.00 3.09
2273 2691 1.568504 AGCTCGGGTGTGGAATCTTA 58.431 50.000 0.00 0.00 0.00 2.10
2285 2705 4.811024 TGTGGAATCTTATTGCTGATCGAC 59.189 41.667 0.00 0.00 0.00 4.20
2287 2707 3.430218 GGAATCTTATTGCTGATCGACCG 59.570 47.826 0.00 0.00 0.00 4.79
2307 2727 1.137614 GAGCAGATCACGAGCACGA 59.862 57.895 11.40 0.00 42.66 4.35
2426 2846 3.670203 CGCATCGTGTGAACTTAATTCC 58.330 45.455 0.00 0.00 36.36 3.01
2433 2853 4.794762 CGTGTGAACTTAATTCCGACGATA 59.205 41.667 0.00 0.00 40.69 2.92
2479 2905 0.109597 GATTTTGTGTCGGCCAGCTG 60.110 55.000 6.78 6.78 0.00 4.24
2480 2906 0.537143 ATTTTGTGTCGGCCAGCTGA 60.537 50.000 17.39 0.00 0.00 4.26
2481 2907 0.537143 TTTTGTGTCGGCCAGCTGAT 60.537 50.000 17.39 0.00 33.49 2.90
2482 2908 0.955428 TTTGTGTCGGCCAGCTGATC 60.955 55.000 17.39 6.33 33.49 2.92
2581 3020 2.056223 GGTACGGGAGGTGCTGCTA 61.056 63.158 0.00 0.00 0.00 3.49
2911 3362 4.083862 GAGGACGGCAGGGTGGTC 62.084 72.222 0.00 0.00 0.00 4.02
3364 3818 0.031314 TCAAAACCGTACGCACCGTA 59.969 50.000 10.49 0.00 41.54 4.02
3406 3862 1.005340 CGAGAGCAGCTTCCATGTTC 58.995 55.000 0.00 0.00 0.00 3.18
3412 3868 0.609957 CAGCTTCCATGTTCCCAGCA 60.610 55.000 0.00 0.00 32.58 4.41
3413 3869 0.323178 AGCTTCCATGTTCCCAGCAG 60.323 55.000 0.00 0.00 32.58 4.24
3414 3870 1.941999 GCTTCCATGTTCCCAGCAGC 61.942 60.000 0.00 0.00 0.00 5.25
3864 4321 2.954684 ATCTTCCGGCCGCTGTGAA 61.955 57.895 22.85 16.87 0.00 3.18
3910 4367 1.779221 TCCATCCCCAATGTCAATGC 58.221 50.000 0.00 0.00 33.13 3.56
3940 4397 6.912591 CGGATTCAATTAATTCCTTGCTGTAC 59.087 38.462 0.00 0.00 0.00 2.90
4067 4525 5.590530 TTGTCAGTTTGCCACATTTACTT 57.409 34.783 0.00 0.00 0.00 2.24
4068 4526 6.701145 TTGTCAGTTTGCCACATTTACTTA 57.299 33.333 0.00 0.00 0.00 2.24
4080 4538 6.033513 GCCACATTTACTTATTTTTCGCTCAC 59.966 38.462 0.00 0.00 0.00 3.51
4111 4569 6.524734 TGAATCTCATACCAGCGATGTAAAT 58.475 36.000 0.00 0.00 0.00 1.40
4120 4578 3.486375 CCAGCGATGTAAATCTGCAAGTG 60.486 47.826 0.00 3.06 33.76 3.16
4124 4582 4.378356 GCGATGTAAATCTGCAAGTGTTCA 60.378 41.667 5.26 0.00 33.76 3.18
4144 4603 7.320087 GTGTTCACAAACATGAAACAACAAAAC 59.680 33.333 0.00 0.00 46.58 2.43
4175 4636 1.367346 TAGGCTTCATGTTGTCCCCA 58.633 50.000 0.00 0.00 0.00 4.96
4270 4733 2.124122 GGTTCGGCACATTTGTTTGAC 58.876 47.619 0.00 0.00 0.00 3.18
4380 4844 4.162320 ACAGGGTATCACATTACACAGGAG 59.838 45.833 0.00 0.00 0.00 3.69
4381 4845 3.711704 AGGGTATCACATTACACAGGAGG 59.288 47.826 0.00 0.00 0.00 4.30
4382 4846 3.454812 GGGTATCACATTACACAGGAGGT 59.545 47.826 0.00 0.00 0.00 3.85
4383 4847 4.080526 GGGTATCACATTACACAGGAGGTT 60.081 45.833 0.00 0.00 0.00 3.50
4384 4848 5.497474 GGTATCACATTACACAGGAGGTTT 58.503 41.667 0.00 0.00 0.00 3.27
4385 4849 5.944007 GGTATCACATTACACAGGAGGTTTT 59.056 40.000 0.00 0.00 0.00 2.43
4386 4850 6.433093 GGTATCACATTACACAGGAGGTTTTT 59.567 38.462 0.00 0.00 0.00 1.94
4387 4851 7.608761 GGTATCACATTACACAGGAGGTTTTTA 59.391 37.037 0.00 0.00 0.00 1.52
4388 4852 9.005777 GTATCACATTACACAGGAGGTTTTTAA 57.994 33.333 0.00 0.00 0.00 1.52
4389 4853 7.883391 TCACATTACACAGGAGGTTTTTAAA 57.117 32.000 0.00 0.00 0.00 1.52
4390 4854 8.472007 TCACATTACACAGGAGGTTTTTAAAT 57.528 30.769 0.00 0.00 0.00 1.40
4391 4855 9.575868 TCACATTACACAGGAGGTTTTTAAATA 57.424 29.630 0.00 0.00 0.00 1.40
4394 4858 9.353999 CATTACACAGGAGGTTTTTAAATAAGC 57.646 33.333 0.00 0.00 0.00 3.09
4395 4859 6.969993 ACACAGGAGGTTTTTAAATAAGCA 57.030 33.333 11.91 0.00 0.00 3.91
4396 4860 6.745116 ACACAGGAGGTTTTTAAATAAGCAC 58.255 36.000 11.91 7.57 0.00 4.40
4397 4861 5.856455 CACAGGAGGTTTTTAAATAAGCACG 59.144 40.000 11.91 0.00 0.00 5.34
4398 4862 5.048294 ACAGGAGGTTTTTAAATAAGCACGG 60.048 40.000 11.91 8.72 0.00 4.94
4399 4863 5.182380 CAGGAGGTTTTTAAATAAGCACGGA 59.818 40.000 11.91 0.00 0.00 4.69
4408 4872 4.718940 AAATAAGCACGGAAGAAATGGG 57.281 40.909 0.00 0.00 0.00 4.00
4485 4950 2.416836 GGTCTATACTGACAAGCGCACA 60.417 50.000 11.47 3.15 38.61 4.57
4505 4970 3.748568 ACAAGCTTCTCGATTTCCTTGAC 59.251 43.478 17.40 0.00 35.09 3.18
4605 5070 9.102757 GCATACATCTCTCACAATCTAAAAAGA 57.897 33.333 0.00 0.00 0.00 2.52
4671 5137 5.125356 TCCATTATCACTCGCATCAATTGT 58.875 37.500 5.13 0.00 0.00 2.71
4755 5221 0.679002 TTGCAGGAAGAGCATGGAGC 60.679 55.000 0.00 0.00 42.33 4.70
4866 5332 4.414852 CAGCAAAAATGAACCACCGATAG 58.585 43.478 0.00 0.00 0.00 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.902162 TTGTACGCTCGCCACGGTC 62.902 63.158 0.00 0.00 34.00 4.79
7 8 2.019951 AGTTTGTACGCTCGCCACG 61.020 57.895 0.00 0.00 0.00 4.94
8 9 1.219522 ACAGTTTGTACGCTCGCCAC 61.220 55.000 0.00 0.00 0.00 5.01
9 10 1.068417 ACAGTTTGTACGCTCGCCA 59.932 52.632 0.00 0.00 0.00 5.69
10 11 1.219522 ACACAGTTTGTACGCTCGCC 61.220 55.000 0.00 0.00 36.32 5.54
12 13 1.071502 CACACACAGTTTGTACGCTCG 60.072 52.381 0.00 0.00 35.67 5.03
13 14 1.931172 ACACACACAGTTTGTACGCTC 59.069 47.619 0.00 0.00 35.67 5.03
14 15 1.663643 CACACACACAGTTTGTACGCT 59.336 47.619 0.00 0.00 35.67 5.07
15 16 1.395608 ACACACACACAGTTTGTACGC 59.604 47.619 0.00 0.00 39.27 4.42
16 17 2.413796 ACACACACACACAGTTTGTACG 59.586 45.455 0.00 0.00 39.03 3.67
19 20 2.031245 CACACACACACACACAGTTTGT 60.031 45.455 0.00 0.00 41.63 2.83
20 21 2.031245 ACACACACACACACACAGTTTG 60.031 45.455 0.00 0.00 34.10 2.93
24 25 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
25 26 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
26 27 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
28 29 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
29 30 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
30 31 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
31 32 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
32 33 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
33 34 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
34 35 2.697431 ACAAACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
36 37 3.376540 ACAAACAAACACACACACACAC 58.623 40.909 0.00 0.00 0.00 3.82
39 40 4.260375 GCAAAACAAACAAACACACACACA 60.260 37.500 0.00 0.00 0.00 3.72
40 41 4.025313 AGCAAAACAAACAAACACACACAC 60.025 37.500 0.00 0.00 0.00 3.82
41 42 4.122776 AGCAAAACAAACAAACACACACA 58.877 34.783 0.00 0.00 0.00 3.72
42 43 4.723879 AGCAAAACAAACAAACACACAC 57.276 36.364 0.00 0.00 0.00 3.82
43 44 5.525378 AGAAAGCAAAACAAACAAACACACA 59.475 32.000 0.00 0.00 0.00 3.72
44 45 5.984627 AGAAAGCAAAACAAACAAACACAC 58.015 33.333 0.00 0.00 0.00 3.82
46 47 6.887368 AGAAGAAAGCAAAACAAACAAACAC 58.113 32.000 0.00 0.00 0.00 3.32
48 49 7.955324 GGTAAGAAGAAAGCAAAACAAACAAAC 59.045 33.333 0.00 0.00 0.00 2.93
49 50 7.875554 AGGTAAGAAGAAAGCAAAACAAACAAA 59.124 29.630 0.00 0.00 0.00 2.83
50 51 7.330700 CAGGTAAGAAGAAAGCAAAACAAACAA 59.669 33.333 0.00 0.00 0.00 2.83
52 53 6.811665 ACAGGTAAGAAGAAAGCAAAACAAAC 59.188 34.615 0.00 0.00 0.00 2.93
53 54 6.930731 ACAGGTAAGAAGAAAGCAAAACAAA 58.069 32.000 0.00 0.00 0.00 2.83
54 55 6.524101 ACAGGTAAGAAGAAAGCAAAACAA 57.476 33.333 0.00 0.00 0.00 2.83
55 56 6.524101 AACAGGTAAGAAGAAAGCAAAACA 57.476 33.333 0.00 0.00 0.00 2.83
56 57 7.827819 AAAACAGGTAAGAAGAAAGCAAAAC 57.172 32.000 0.00 0.00 0.00 2.43
57 58 7.274686 CGAAAAACAGGTAAGAAGAAAGCAAAA 59.725 33.333 0.00 0.00 0.00 2.44
58 59 6.750039 CGAAAAACAGGTAAGAAGAAAGCAAA 59.250 34.615 0.00 0.00 0.00 3.68
60 61 5.220970 CCGAAAAACAGGTAAGAAGAAAGCA 60.221 40.000 0.00 0.00 0.00 3.91
61 62 5.008316 TCCGAAAAACAGGTAAGAAGAAAGC 59.992 40.000 0.00 0.00 0.00 3.51
62 63 6.260271 ACTCCGAAAAACAGGTAAGAAGAAAG 59.740 38.462 0.00 0.00 0.00 2.62
63 64 6.117488 ACTCCGAAAAACAGGTAAGAAGAAA 58.883 36.000 0.00 0.00 0.00 2.52
64 65 5.677567 ACTCCGAAAAACAGGTAAGAAGAA 58.322 37.500 0.00 0.00 0.00 2.52
65 66 5.286267 ACTCCGAAAAACAGGTAAGAAGA 57.714 39.130 0.00 0.00 0.00 2.87
67 68 4.053295 CGACTCCGAAAAACAGGTAAGAA 58.947 43.478 0.00 0.00 38.22 2.52
68 69 3.318839 TCGACTCCGAAAAACAGGTAAGA 59.681 43.478 0.00 0.00 42.51 2.10
69 70 3.645884 TCGACTCCGAAAAACAGGTAAG 58.354 45.455 0.00 0.00 42.51 2.34
70 71 3.731652 TCGACTCCGAAAAACAGGTAA 57.268 42.857 0.00 0.00 42.51 2.85
82 83 2.941064 TGAAGTGGTACTATCGACTCCG 59.059 50.000 0.00 0.00 37.07 4.63
83 84 4.639310 TCTTGAAGTGGTACTATCGACTCC 59.361 45.833 0.00 0.00 0.00 3.85
84 85 5.814764 TCTTGAAGTGGTACTATCGACTC 57.185 43.478 0.00 0.00 0.00 3.36
86 87 7.829378 AATTTCTTGAAGTGGTACTATCGAC 57.171 36.000 0.00 0.00 0.00 4.20
87 88 9.362539 GTTAATTTCTTGAAGTGGTACTATCGA 57.637 33.333 0.00 0.00 0.00 3.59
89 90 8.601476 CGGTTAATTTCTTGAAGTGGTACTATC 58.399 37.037 0.00 0.00 0.00 2.08
90 91 8.098912 ACGGTTAATTTCTTGAAGTGGTACTAT 58.901 33.333 0.00 0.00 0.00 2.12
92 93 6.293698 ACGGTTAATTTCTTGAAGTGGTACT 58.706 36.000 0.00 0.00 0.00 2.73
94 95 6.527423 AGACGGTTAATTTCTTGAAGTGGTA 58.473 36.000 0.00 0.00 0.00 3.25
95 96 5.374071 AGACGGTTAATTTCTTGAAGTGGT 58.626 37.500 0.00 0.00 0.00 4.16
97 98 8.084590 ACTTAGACGGTTAATTTCTTGAAGTG 57.915 34.615 0.00 0.00 0.00 3.16
98 99 8.672823 AACTTAGACGGTTAATTTCTTGAAGT 57.327 30.769 0.00 0.00 0.00 3.01
104 105 9.715121 TGTCAATAACTTAGACGGTTAATTTCT 57.285 29.630 0.00 0.00 35.09 2.52
108 109 9.444600 ACAATGTCAATAACTTAGACGGTTAAT 57.555 29.630 0.00 0.00 35.09 1.40
110 111 8.089597 TGACAATGTCAATAACTTAGACGGTTA 58.910 33.333 14.37 0.00 39.78 2.85
118 119 9.936759 TGTATGACTGACAATGTCAATAACTTA 57.063 29.630 17.41 8.32 45.82 2.24
119 120 8.846943 TGTATGACTGACAATGTCAATAACTT 57.153 30.769 17.41 9.12 45.82 2.66
120 121 8.846943 TTGTATGACTGACAATGTCAATAACT 57.153 30.769 17.41 4.31 45.82 2.24
121 122 9.708222 GATTGTATGACTGACAATGTCAATAAC 57.292 33.333 17.41 11.13 45.33 1.89
122 123 8.603181 CGATTGTATGACTGACAATGTCAATAA 58.397 33.333 17.41 0.13 45.33 1.40
123 124 7.254421 GCGATTGTATGACTGACAATGTCAATA 60.254 37.037 17.41 9.50 45.33 1.90
126 127 4.329801 GCGATTGTATGACTGACAATGTCA 59.670 41.667 15.88 15.88 45.33 3.58
128 129 4.507710 AGCGATTGTATGACTGACAATGT 58.492 39.130 5.77 0.00 45.33 2.71
131 132 5.961272 TCTTAGCGATTGTATGACTGACAA 58.039 37.500 0.00 0.00 40.88 3.18
132 133 5.576447 TCTTAGCGATTGTATGACTGACA 57.424 39.130 0.00 0.00 0.00 3.58
134 135 5.301805 TCCATCTTAGCGATTGTATGACTGA 59.698 40.000 0.00 0.00 0.00 3.41
136 137 5.791336 TCCATCTTAGCGATTGTATGACT 57.209 39.130 0.00 0.00 0.00 3.41
137 138 8.029522 TCTAATCCATCTTAGCGATTGTATGAC 58.970 37.037 0.00 0.00 0.00 3.06
141 142 6.071334 CCCTCTAATCCATCTTAGCGATTGTA 60.071 42.308 0.00 0.00 0.00 2.41
143 144 5.174395 CCCTCTAATCCATCTTAGCGATTG 58.826 45.833 0.00 0.00 0.00 2.67
144 145 4.841246 ACCCTCTAATCCATCTTAGCGATT 59.159 41.667 0.00 0.00 0.00 3.34
148 149 5.106078 CGTCTACCCTCTAATCCATCTTAGC 60.106 48.000 0.00 0.00 0.00 3.09
149 150 6.239396 TCGTCTACCCTCTAATCCATCTTAG 58.761 44.000 0.00 0.00 0.00 2.18
152 153 4.726035 TCGTCTACCCTCTAATCCATCT 57.274 45.455 0.00 0.00 0.00 2.90
153 154 7.040961 GCTATATCGTCTACCCTCTAATCCATC 60.041 44.444 0.00 0.00 0.00 3.51
154 155 6.773685 GCTATATCGTCTACCCTCTAATCCAT 59.226 42.308 0.00 0.00 0.00 3.41
155 156 6.120905 GCTATATCGTCTACCCTCTAATCCA 58.879 44.000 0.00 0.00 0.00 3.41
157 158 6.358991 AGGCTATATCGTCTACCCTCTAATC 58.641 44.000 0.00 0.00 0.00 1.75
158 159 6.330178 AGGCTATATCGTCTACCCTCTAAT 57.670 41.667 0.00 0.00 0.00 1.73
159 160 5.775813 AGGCTATATCGTCTACCCTCTAA 57.224 43.478 0.00 0.00 0.00 2.10
160 161 5.723405 TGTAGGCTATATCGTCTACCCTCTA 59.277 44.000 14.46 0.00 40.49 2.43
161 162 4.535294 TGTAGGCTATATCGTCTACCCTCT 59.465 45.833 14.46 0.00 40.49 3.69
162 163 4.841422 TGTAGGCTATATCGTCTACCCTC 58.159 47.826 14.46 0.00 40.49 4.30
163 164 4.923516 TGTAGGCTATATCGTCTACCCT 57.076 45.455 14.46 0.00 40.49 4.34
164 165 6.405619 GGAATTGTAGGCTATATCGTCTACCC 60.406 46.154 14.46 6.46 40.49 3.69
165 166 6.377712 AGGAATTGTAGGCTATATCGTCTACC 59.622 42.308 14.46 1.60 40.49 3.18
166 167 7.393841 AGGAATTGTAGGCTATATCGTCTAC 57.606 40.000 11.14 11.14 41.34 2.59
167 168 8.105197 TGTAGGAATTGTAGGCTATATCGTCTA 58.895 37.037 0.00 0.00 0.00 2.59
168 169 6.946583 TGTAGGAATTGTAGGCTATATCGTCT 59.053 38.462 0.00 0.00 0.00 4.18
169 170 7.154435 TGTAGGAATTGTAGGCTATATCGTC 57.846 40.000 0.00 0.00 0.00 4.20
170 171 7.396339 TCATGTAGGAATTGTAGGCTATATCGT 59.604 37.037 0.00 0.00 0.00 3.73
172 173 9.539825 CATCATGTAGGAATTGTAGGCTATATC 57.460 37.037 0.00 0.00 0.00 1.63
176 177 5.307976 AGCATCATGTAGGAATTGTAGGCTA 59.692 40.000 0.00 0.00 0.00 3.93
177 178 4.103785 AGCATCATGTAGGAATTGTAGGCT 59.896 41.667 0.00 0.00 0.00 4.58
178 179 4.392940 AGCATCATGTAGGAATTGTAGGC 58.607 43.478 0.00 0.00 0.00 3.93
181 182 8.924303 AGTAGTAAGCATCATGTAGGAATTGTA 58.076 33.333 0.00 0.00 0.00 2.41
182 183 7.796054 AGTAGTAAGCATCATGTAGGAATTGT 58.204 34.615 0.00 0.00 0.00 2.71
183 184 9.197694 GTAGTAGTAAGCATCATGTAGGAATTG 57.802 37.037 0.00 0.00 0.00 2.32
184 185 9.148879 AGTAGTAGTAAGCATCATGTAGGAATT 57.851 33.333 0.00 0.00 0.00 2.17
185 186 8.713708 AGTAGTAGTAAGCATCATGTAGGAAT 57.286 34.615 0.00 0.00 0.00 3.01
186 187 9.064706 GTAGTAGTAGTAAGCATCATGTAGGAA 57.935 37.037 0.00 0.00 0.00 3.36
187 188 8.438373 AGTAGTAGTAGTAAGCATCATGTAGGA 58.562 37.037 0.00 0.00 0.00 2.94
188 189 8.624367 AGTAGTAGTAGTAAGCATCATGTAGG 57.376 38.462 0.00 0.00 0.00 3.18
191 192 8.975663 TGTAGTAGTAGTAGTAAGCATCATGT 57.024 34.615 0.00 0.00 0.00 3.21
204 205 8.111545 TCCACCTCATCTTTTGTAGTAGTAGTA 58.888 37.037 0.00 0.00 0.00 1.82
205 206 6.952358 TCCACCTCATCTTTTGTAGTAGTAGT 59.048 38.462 0.00 0.00 0.00 2.73
206 207 7.406031 TCCACCTCATCTTTTGTAGTAGTAG 57.594 40.000 0.00 0.00 0.00 2.57
208 209 6.497259 TCTTCCACCTCATCTTTTGTAGTAGT 59.503 38.462 0.00 0.00 0.00 2.73
209 210 6.936279 TCTTCCACCTCATCTTTTGTAGTAG 58.064 40.000 0.00 0.00 0.00 2.57
210 211 6.574465 GCTCTTCCACCTCATCTTTTGTAGTA 60.574 42.308 0.00 0.00 0.00 1.82
211 212 5.799213 CTCTTCCACCTCATCTTTTGTAGT 58.201 41.667 0.00 0.00 0.00 2.73
212 213 4.633565 GCTCTTCCACCTCATCTTTTGTAG 59.366 45.833 0.00 0.00 0.00 2.74
213 214 4.287067 AGCTCTTCCACCTCATCTTTTGTA 59.713 41.667 0.00 0.00 0.00 2.41
214 215 3.073650 AGCTCTTCCACCTCATCTTTTGT 59.926 43.478 0.00 0.00 0.00 2.83
224 483 1.562783 GGTGAGTAGCTCTTCCACCT 58.437 55.000 15.87 0.00 42.82 4.00
232 491 2.229302 AGTCGTCAAAGGTGAGTAGCTC 59.771 50.000 0.00 0.00 33.27 4.09
263 522 1.441738 TTCGTGTGGTCATGATGCTG 58.558 50.000 0.00 0.00 39.04 4.41
272 531 2.158254 GGACGGTTAATTTCGTGTGGTC 59.842 50.000 6.27 0.00 39.88 4.02
324 583 0.521735 GGCCGAGTGGAACAACATTC 59.478 55.000 0.00 0.00 44.16 2.67
337 596 1.379527 GAAACATGGTTAGGGCCGAG 58.620 55.000 0.00 0.00 0.00 4.63
342 601 3.089284 GGTTCTGGAAACATGGTTAGGG 58.911 50.000 0.00 0.00 41.51 3.53
394 653 0.385974 CAAGGAGCAAGCGAAAACCG 60.386 55.000 0.00 0.00 42.21 4.44
406 665 3.636153 AATAGGTCAAGGTCAAGGAGC 57.364 47.619 0.00 0.00 0.00 4.70
429 688 7.821359 CCACTCATCACAAATATATTCCGATCT 59.179 37.037 0.00 0.00 0.00 2.75
430 689 7.604164 ACCACTCATCACAAATATATTCCGATC 59.396 37.037 0.00 0.00 0.00 3.69
431 690 7.388776 CACCACTCATCACAAATATATTCCGAT 59.611 37.037 0.00 0.00 0.00 4.18
439 698 4.202080 GCATGCACCACTCATCACAAATAT 60.202 41.667 14.21 0.00 0.00 1.28
441 700 2.094390 GCATGCACCACTCATCACAAAT 60.094 45.455 14.21 0.00 0.00 2.32
442 701 1.270274 GCATGCACCACTCATCACAAA 59.730 47.619 14.21 0.00 0.00 2.83
473 732 4.290155 GCACGAGCAATGAAAAGAAAAGA 58.710 39.130 0.00 0.00 41.58 2.52
474 733 3.426525 GGCACGAGCAATGAAAAGAAAAG 59.573 43.478 7.26 0.00 44.61 2.27
488 749 2.358247 TCCGGAAAAGGCACGAGC 60.358 61.111 0.00 0.00 41.10 5.03
491 752 1.574428 CAACTCCGGAAAAGGCACG 59.426 57.895 5.23 0.00 0.00 5.34
554 869 1.595929 GTTGACGGAGGCGGTGAAA 60.596 57.895 0.00 0.00 0.00 2.69
575 890 1.588674 AAAAACTCCATCACGTCGCA 58.411 45.000 0.00 0.00 0.00 5.10
599 914 1.693083 CGAAATTGACGACGGAGGCC 61.693 60.000 0.00 0.00 0.00 5.19
612 927 0.816018 TGGTGGTGTCACGCGAAATT 60.816 50.000 15.93 0.00 44.50 1.82
620 935 1.134936 GGTTTTTGGTGGTGGTGTCAC 60.135 52.381 0.00 0.00 42.91 3.67
663 986 1.563173 GATTAACGGCGGTCGATGC 59.437 57.895 9.82 4.18 42.43 3.91
664 987 0.528901 TGGATTAACGGCGGTCGATG 60.529 55.000 9.82 0.00 42.43 3.84
667 990 1.446445 TGTGGATTAACGGCGGTCG 60.446 57.895 13.24 0.00 45.88 4.79
690 1013 4.638865 GGTGCGATGGAGGTTAAAGTTAAT 59.361 41.667 0.00 0.00 0.00 1.40
720 1044 1.795170 GCAAATCCAGGTGTGCGTGT 61.795 55.000 0.00 0.00 0.00 4.49
741 1065 2.981400 TAAGGCGTGCTTTGTTTAGC 57.019 45.000 0.00 0.00 41.59 3.09
846 1170 0.179145 CGAGGCTTATATACGCGGGG 60.179 60.000 12.47 0.00 0.00 5.73
888 1212 2.202146 CAGGACGACGACGACGAC 60.202 66.667 25.15 18.64 42.66 4.34
889 1213 3.417224 CCAGGACGACGACGACGA 61.417 66.667 25.15 0.00 42.66 4.20
984 1308 1.047002 ACATGGCTCCTAGCTAGCTG 58.953 55.000 27.68 16.13 41.99 4.24
985 1309 1.047002 CACATGGCTCCTAGCTAGCT 58.953 55.000 23.12 23.12 41.99 3.32
986 1310 0.034616 CCACATGGCTCCTAGCTAGC 59.965 60.000 15.74 6.62 41.99 3.42
987 1311 0.683973 CCCACATGGCTCCTAGCTAG 59.316 60.000 14.20 14.20 41.99 3.42
988 1312 2.840199 CCCACATGGCTCCTAGCTA 58.160 57.895 0.00 0.00 41.99 3.32
989 1313 3.652687 CCCACATGGCTCCTAGCT 58.347 61.111 0.00 0.00 41.99 3.32
1241 1565 2.501610 GGAGGATGTCGTGGGAGC 59.498 66.667 0.00 0.00 0.00 4.70
1263 1587 1.139095 GTGGTAGAAGGCGAGGACG 59.861 63.158 0.00 0.00 42.93 4.79
1293 1617 0.305922 GCGTATGCGTACCGTAGAGT 59.694 55.000 10.49 0.00 40.81 3.24
1308 1632 4.577834 TGTTGATGGATCGATAAGCGTA 57.422 40.909 0.00 0.00 41.80 4.42
1310 1634 3.555547 TGTTGTTGATGGATCGATAAGCG 59.444 43.478 0.00 0.00 42.69 4.68
1311 1635 4.572389 AGTGTTGTTGATGGATCGATAAGC 59.428 41.667 0.00 0.00 0.00 3.09
1318 1642 3.425359 CGAGCAAGTGTTGTTGATGGATC 60.425 47.826 0.00 0.00 0.00 3.36
1319 1643 2.485426 CGAGCAAGTGTTGTTGATGGAT 59.515 45.455 0.00 0.00 0.00 3.41
1322 1646 3.818961 ATCGAGCAAGTGTTGTTGATG 57.181 42.857 0.00 0.00 0.00 3.07
1335 1659 1.167851 CAAGGGAGCAAAATCGAGCA 58.832 50.000 0.00 0.00 0.00 4.26
1339 1663 2.704572 AGAGACAAGGGAGCAAAATCG 58.295 47.619 0.00 0.00 0.00 3.34
1340 1664 4.331108 AGAAGAGACAAGGGAGCAAAATC 58.669 43.478 0.00 0.00 0.00 2.17
1341 1665 4.379302 AGAAGAGACAAGGGAGCAAAAT 57.621 40.909 0.00 0.00 0.00 1.82
1342 1666 3.864789 AGAAGAGACAAGGGAGCAAAA 57.135 42.857 0.00 0.00 0.00 2.44
1343 1667 3.392616 AGAAGAAGAGACAAGGGAGCAAA 59.607 43.478 0.00 0.00 0.00 3.68
1344 1668 2.975489 AGAAGAAGAGACAAGGGAGCAA 59.025 45.455 0.00 0.00 0.00 3.91
1345 1669 2.614259 AGAAGAAGAGACAAGGGAGCA 58.386 47.619 0.00 0.00 0.00 4.26
1346 1670 3.694043 AAGAAGAAGAGACAAGGGAGC 57.306 47.619 0.00 0.00 0.00 4.70
1349 1673 3.677424 CGGCTAAGAAGAAGAGACAAGGG 60.677 52.174 0.00 0.00 0.00 3.95
1350 1674 3.516615 CGGCTAAGAAGAAGAGACAAGG 58.483 50.000 0.00 0.00 0.00 3.61
1353 1677 2.231478 CACCGGCTAAGAAGAAGAGACA 59.769 50.000 0.00 0.00 0.00 3.41
1355 1679 2.492484 GTCACCGGCTAAGAAGAAGAGA 59.508 50.000 0.00 0.00 0.00 3.10
1356 1680 2.231478 TGTCACCGGCTAAGAAGAAGAG 59.769 50.000 0.00 0.00 0.00 2.85
1357 1681 2.244695 TGTCACCGGCTAAGAAGAAGA 58.755 47.619 0.00 0.00 0.00 2.87
1358 1682 2.743636 TGTCACCGGCTAAGAAGAAG 57.256 50.000 0.00 0.00 0.00 2.85
1359 1683 3.260884 AGATTGTCACCGGCTAAGAAGAA 59.739 43.478 0.00 0.00 0.00 2.52
1360 1684 2.832129 AGATTGTCACCGGCTAAGAAGA 59.168 45.455 0.00 0.00 0.00 2.87
1361 1685 3.118956 AGAGATTGTCACCGGCTAAGAAG 60.119 47.826 0.00 0.00 0.00 2.85
1362 1686 2.832129 AGAGATTGTCACCGGCTAAGAA 59.168 45.455 0.00 0.00 0.00 2.52
1363 1687 2.427453 GAGAGATTGTCACCGGCTAAGA 59.573 50.000 0.00 0.00 0.00 2.10
1364 1688 2.428890 AGAGAGATTGTCACCGGCTAAG 59.571 50.000 0.00 0.00 0.00 2.18
1365 1689 2.427453 GAGAGAGATTGTCACCGGCTAA 59.573 50.000 0.00 0.00 0.00 3.09
1368 1692 0.820871 AGAGAGAGATTGTCACCGGC 59.179 55.000 0.00 0.00 0.00 6.13
1370 1694 3.694072 AGAAGAGAGAGAGATTGTCACCG 59.306 47.826 0.00 0.00 0.00 4.94
1381 1705 7.944554 AGAAGAAGAAGAAGAAGAAGAGAGAGA 59.055 37.037 0.00 0.00 0.00 3.10
1382 1706 8.115490 AGAAGAAGAAGAAGAAGAAGAGAGAG 57.885 38.462 0.00 0.00 0.00 3.20
1383 1707 8.477419 AAGAAGAAGAAGAAGAAGAAGAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
1384 1708 8.579863 AGAAGAAGAAGAAGAAGAAGAAGAGAG 58.420 37.037 0.00 0.00 0.00 3.20
1385 1709 8.477419 AGAAGAAGAAGAAGAAGAAGAAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
1386 1710 9.196552 GAAGAAGAAGAAGAAGAAGAAGAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
1387 1711 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1388 1712 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1389 1713 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1390 1714 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1391 1715 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1392 1716 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1393 1717 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1394 1718 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1395 1719 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1396 1720 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1397 1721 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1398 1722 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1399 1723 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1400 1724 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1401 1725 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1402 1726 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
1403 1727 7.930865 TGGAAGAAGAAGAAGAAGAAGAAGAAG 59.069 37.037 0.00 0.00 0.00 2.85
1404 1728 7.796054 TGGAAGAAGAAGAAGAAGAAGAAGAA 58.204 34.615 0.00 0.00 0.00 2.52
1405 1729 7.366847 TGGAAGAAGAAGAAGAAGAAGAAGA 57.633 36.000 0.00 0.00 0.00 2.87
1406 1730 8.620116 ATTGGAAGAAGAAGAAGAAGAAGAAG 57.380 34.615 0.00 0.00 0.00 2.85
1407 1731 8.986929 AATTGGAAGAAGAAGAAGAAGAAGAA 57.013 30.769 0.00 0.00 0.00 2.52
1408 1732 8.986929 AAATTGGAAGAAGAAGAAGAAGAAGA 57.013 30.769 0.00 0.00 0.00 2.87
1409 1733 9.460906 CAAAATTGGAAGAAGAAGAAGAAGAAG 57.539 33.333 0.00 0.00 0.00 2.85
1410 1734 7.922811 GCAAAATTGGAAGAAGAAGAAGAAGAA 59.077 33.333 0.00 0.00 0.00 2.52
1443 1767 1.079127 AGGCGACGATGGAAGTTGG 60.079 57.895 0.00 0.00 0.00 3.77
1447 1771 0.318275 GCTAGAGGCGACGATGGAAG 60.318 60.000 0.00 0.00 0.00 3.46
1469 1793 1.801332 CATGAACTGAGCCAGCTGC 59.199 57.895 8.66 3.91 41.71 5.25
1472 1796 0.381089 GATGCATGAACTGAGCCAGC 59.619 55.000 2.46 0.00 34.37 4.85
1502 1826 5.512404 CCCGGTAATGGAACTGCTGATAATA 60.512 44.000 0.00 0.00 0.00 0.98
1503 1827 4.389374 CCGGTAATGGAACTGCTGATAAT 58.611 43.478 0.00 0.00 0.00 1.28
1506 1830 1.134098 CCCGGTAATGGAACTGCTGAT 60.134 52.381 0.00 0.00 0.00 2.90
1509 1833 1.134098 CATCCCGGTAATGGAACTGCT 60.134 52.381 0.00 0.00 35.03 4.24
1510 1834 1.134220 TCATCCCGGTAATGGAACTGC 60.134 52.381 12.65 0.00 35.03 4.40
1511 1835 2.170607 AGTCATCCCGGTAATGGAACTG 59.829 50.000 12.65 0.00 35.03 3.16
1520 1844 3.119009 TCCCTTAAAGTCATCCCGGTA 57.881 47.619 0.00 0.00 0.00 4.02
1525 1849 3.427638 GCGCTTTTCCCTTAAAGTCATCC 60.428 47.826 0.00 0.00 37.43 3.51
1526 1850 3.727970 CGCGCTTTTCCCTTAAAGTCATC 60.728 47.826 5.56 0.00 37.43 2.92
1527 1851 2.161609 CGCGCTTTTCCCTTAAAGTCAT 59.838 45.455 5.56 0.00 37.43 3.06
1528 1852 1.533731 CGCGCTTTTCCCTTAAAGTCA 59.466 47.619 5.56 0.00 37.43 3.41
1529 1853 1.534163 ACGCGCTTTTCCCTTAAAGTC 59.466 47.619 5.73 0.00 37.43 3.01
1531 1855 1.963747 CACGCGCTTTTCCCTTAAAG 58.036 50.000 5.73 0.00 38.00 1.85
1535 1871 1.805428 AATGCACGCGCTTTTCCCTT 61.805 50.000 5.73 0.00 39.64 3.95
1537 1873 1.372872 AAATGCACGCGCTTTTCCC 60.373 52.632 5.73 0.00 40.41 3.97
1563 1899 7.648142 TGTTTATTTCCTCATATGCGGAATTC 58.352 34.615 24.19 14.32 38.55 2.17
1569 1905 6.795399 ACCTTTGTTTATTTCCTCATATGCG 58.205 36.000 0.00 0.00 0.00 4.73
1592 1930 2.222678 TCACACTGTCTCGTCGTCTAAC 59.777 50.000 0.00 0.00 0.00 2.34
1650 1988 3.084039 TCCTACTTGCAAAAGCATGGAG 58.916 45.455 0.00 8.22 0.00 3.86
1698 2036 4.699522 AAACGAGGGAGGCGCCAC 62.700 66.667 31.54 23.95 38.95 5.01
1702 2040 0.739813 CTAACCAAACGAGGGAGGCG 60.740 60.000 0.00 0.00 0.00 5.52
1793 2131 8.726988 GCAACCGGTATATATTTATGTCATTGT 58.273 33.333 8.00 0.00 0.00 2.71
1794 2132 8.946085 AGCAACCGGTATATATTTATGTCATTG 58.054 33.333 8.00 0.00 0.00 2.82
1795 2133 9.515226 AAGCAACCGGTATATATTTATGTCATT 57.485 29.630 8.00 0.00 0.00 2.57
1796 2134 9.162764 GAAGCAACCGGTATATATTTATGTCAT 57.837 33.333 8.00 0.00 0.00 3.06
1797 2135 8.372459 AGAAGCAACCGGTATATATTTATGTCA 58.628 33.333 8.00 0.00 0.00 3.58
1810 2148 0.034337 AGCGAAAGAAGCAACCGGTA 59.966 50.000 8.00 0.00 37.01 4.02
1813 2151 1.780860 CAAAAGCGAAAGAAGCAACCG 59.219 47.619 0.00 0.00 37.01 4.44
1814 2152 2.809446 ACAAAAGCGAAAGAAGCAACC 58.191 42.857 0.00 0.00 37.01 3.77
1815 2153 5.942325 TTTACAAAAGCGAAAGAAGCAAC 57.058 34.783 0.00 0.00 37.01 4.17
1845 2183 6.584563 GCCGTTTTTGCTAGTGATTTTTATCA 59.415 34.615 0.00 0.00 0.00 2.15
1855 2193 2.769376 CATACGCCGTTTTTGCTAGTG 58.231 47.619 0.00 0.00 0.00 2.74
1857 2195 1.129624 TGCATACGCCGTTTTTGCTAG 59.870 47.619 16.63 0.00 37.32 3.42
1858 2196 1.157585 TGCATACGCCGTTTTTGCTA 58.842 45.000 16.63 5.01 37.32 3.49
1866 2244 1.153369 AGCTCATTGCATACGCCGT 60.153 52.632 0.00 0.00 45.94 5.68
1880 2266 1.129437 GTTTGACTTGCGATGGAGCTC 59.871 52.381 4.71 4.71 38.13 4.09
1907 2303 0.466189 ACGGATCATGGCCAACATCC 60.466 55.000 26.58 26.58 37.84 3.51
1926 2322 3.458163 GCCTGGTGGGACGATCGA 61.458 66.667 24.34 0.00 37.23 3.59
1934 2330 4.742201 CGTCGACAGCCTGGTGGG 62.742 72.222 17.16 0.00 38.36 4.61
1980 2376 4.675029 AGGTCGGGTTGGTTCGCG 62.675 66.667 0.00 0.00 43.33 5.87
2025 2425 4.789075 GCAAGCTGCGCATGTGGG 62.789 66.667 12.24 0.00 31.71 4.61
2036 2436 3.063510 TGAGCACAGATTAAGCAAGCT 57.936 42.857 4.59 4.59 0.00 3.74
2055 2455 1.124297 CATCAACCGAACGACGACTTG 59.876 52.381 0.00 8.67 45.77 3.16
2091 2501 3.650298 ATGCTCCGGCTGGCAATGT 62.650 57.895 17.52 2.62 41.90 2.71
2103 2513 1.938577 CCGATATATGCTGCATGCTCC 59.061 52.381 24.59 10.14 43.37 4.70
2112 2522 4.096681 TGGATCCTGAACCGATATATGCT 58.903 43.478 14.23 0.00 0.00 3.79
2256 2674 2.614057 GCAATAAGATTCCACACCCGAG 59.386 50.000 0.00 0.00 0.00 4.63
2273 2691 0.807667 GCTCACGGTCGATCAGCAAT 60.808 55.000 1.83 0.00 0.00 3.56
2426 2846 1.663445 GCTCGGGTCAATCTATCGTCG 60.663 57.143 0.00 0.00 0.00 5.12
2433 2853 2.428890 CTGAACTAGCTCGGGTCAATCT 59.571 50.000 8.40 0.00 0.00 2.40
2479 2905 1.925946 GCCAAACAACACGCACAGATC 60.926 52.381 0.00 0.00 0.00 2.75
2480 2906 0.030638 GCCAAACAACACGCACAGAT 59.969 50.000 0.00 0.00 0.00 2.90
2481 2907 1.308783 TGCCAAACAACACGCACAGA 61.309 50.000 0.00 0.00 0.00 3.41
2482 2908 0.866906 CTGCCAAACAACACGCACAG 60.867 55.000 0.00 0.00 0.00 3.66
2566 3005 2.663196 GTTAGCAGCACCTCCCGT 59.337 61.111 0.00 0.00 0.00 5.28
2818 3269 3.991051 CACTCGGCCACGTCCACT 61.991 66.667 2.24 0.00 41.85 4.00
2860 3311 1.683790 CGAAGGTGGCGAACGTGATC 61.684 60.000 0.00 0.00 0.00 2.92
2911 3362 1.431440 CTCGTCCTGGAGCTCGAAG 59.569 63.158 7.83 7.84 32.12 3.79
2965 3416 3.451665 CGGTACCCGGGGATGTAG 58.548 66.667 27.92 5.27 44.15 2.74
3081 3532 4.719369 GCTCGTCGCCGTGACCTT 62.719 66.667 6.50 0.00 45.23 3.50
3163 3617 2.076100 CTCTCCTCGATGATCTCCTCG 58.924 57.143 0.00 0.43 36.25 4.63
3364 3818 0.553819 ATGGGAGCGAGAGGTAGAGT 59.446 55.000 0.00 0.00 45.11 3.24
3370 3824 2.202987 GTGCATGGGAGCGAGAGG 60.203 66.667 0.00 0.00 37.31 3.69
3406 3862 2.182842 GTCGCCATTAGCTGCTGGG 61.183 63.158 13.43 12.05 40.39 4.45
3412 3868 0.389391 ATAGCACGTCGCCATTAGCT 59.611 50.000 6.39 0.00 44.04 3.32
3413 3869 0.508641 CATAGCACGTCGCCATTAGC 59.491 55.000 6.39 0.00 44.04 3.09
3414 3870 1.852942 ACATAGCACGTCGCCATTAG 58.147 50.000 6.39 0.00 44.04 1.73
3424 3881 1.196127 CCTGCATGCATACATAGCACG 59.804 52.381 22.97 4.99 45.95 5.34
3615 4072 2.047939 CGCCGGGTTAAACTCCGT 60.048 61.111 2.18 0.00 44.32 4.69
3886 4343 2.146147 TGACATTGGGGATGGATGGAT 58.854 47.619 0.00 0.00 40.21 3.41
3887 4344 1.606026 TGACATTGGGGATGGATGGA 58.394 50.000 0.00 0.00 40.21 3.41
3910 4367 7.227512 AGCAAGGAATTAATTGAATCCGACTAG 59.772 37.037 5.17 0.00 0.00 2.57
3940 4397 1.825474 ACAGAGGAGACGGTGGTAATG 59.175 52.381 0.00 0.00 0.00 1.90
4005 4462 5.356470 GCTTCTCTTCTTTGTAATCTGGCAT 59.644 40.000 0.00 0.00 0.00 4.40
4067 4525 5.147330 TCAGGAAGAGTGAGCGAAAAATA 57.853 39.130 0.00 0.00 0.00 1.40
4068 4526 4.008074 TCAGGAAGAGTGAGCGAAAAAT 57.992 40.909 0.00 0.00 0.00 1.82
4080 4538 4.630111 GCTGGTATGAGATTCAGGAAGAG 58.370 47.826 0.00 0.00 0.00 2.85
4120 4578 7.348201 TGTTTTGTTGTTTCATGTTTGTGAAC 58.652 30.769 0.00 0.00 37.80 3.18
4124 4582 8.539770 TGTATGTTTTGTTGTTTCATGTTTGT 57.460 26.923 0.00 0.00 0.00 2.83
4144 4603 8.570096 CAACATGAAGCCTATCATTTTGTATG 57.430 34.615 0.00 0.00 40.28 2.39
4155 4616 1.922447 TGGGGACAACATGAAGCCTAT 59.078 47.619 0.00 0.00 37.44 2.57
4175 4636 2.940410 CCGCACCTGGTACGATTAATTT 59.060 45.455 20.61 0.00 0.00 1.82
4259 4722 7.306925 GCATGCATATATGGTGTCAAACAAATG 60.307 37.037 14.21 0.26 0.00 2.32
4380 4844 7.933728 TTTCTTCCGTGCTTATTTAAAAACC 57.066 32.000 0.00 0.00 0.00 3.27
4381 4845 8.432359 CCATTTCTTCCGTGCTTATTTAAAAAC 58.568 33.333 0.00 0.00 0.00 2.43
4382 4846 7.600752 CCCATTTCTTCCGTGCTTATTTAAAAA 59.399 33.333 0.00 0.00 0.00 1.94
4383 4847 7.093992 CCCATTTCTTCCGTGCTTATTTAAAA 58.906 34.615 0.00 0.00 0.00 1.52
4384 4848 6.209788 ACCCATTTCTTCCGTGCTTATTTAAA 59.790 34.615 0.00 0.00 0.00 1.52
4385 4849 5.712917 ACCCATTTCTTCCGTGCTTATTTAA 59.287 36.000 0.00 0.00 0.00 1.52
4386 4850 5.258051 ACCCATTTCTTCCGTGCTTATTTA 58.742 37.500 0.00 0.00 0.00 1.40
4387 4851 4.086457 ACCCATTTCTTCCGTGCTTATTT 58.914 39.130 0.00 0.00 0.00 1.40
4388 4852 3.697166 ACCCATTTCTTCCGTGCTTATT 58.303 40.909 0.00 0.00 0.00 1.40
4389 4853 3.366052 ACCCATTTCTTCCGTGCTTAT 57.634 42.857 0.00 0.00 0.00 1.73
4390 4854 2.817258 CAACCCATTTCTTCCGTGCTTA 59.183 45.455 0.00 0.00 0.00 3.09
4391 4855 1.613437 CAACCCATTTCTTCCGTGCTT 59.387 47.619 0.00 0.00 0.00 3.91
4392 4856 1.247567 CAACCCATTTCTTCCGTGCT 58.752 50.000 0.00 0.00 0.00 4.40
4393 4857 0.388520 GCAACCCATTTCTTCCGTGC 60.389 55.000 0.00 0.00 0.00 5.34
4394 4858 0.243636 GGCAACCCATTTCTTCCGTG 59.756 55.000 0.00 0.00 0.00 4.94
4395 4859 0.112412 AGGCAACCCATTTCTTCCGT 59.888 50.000 0.00 0.00 37.17 4.69
4396 4860 1.256812 AAGGCAACCCATTTCTTCCG 58.743 50.000 0.00 0.00 37.17 4.30
4397 4861 2.899900 AGAAAGGCAACCCATTTCTTCC 59.100 45.455 0.00 0.00 36.26 3.46
4398 4862 3.366374 CGAGAAAGGCAACCCATTTCTTC 60.366 47.826 4.73 0.00 38.03 2.87
4399 4863 2.558359 CGAGAAAGGCAACCCATTTCTT 59.442 45.455 4.73 0.00 38.03 2.52
4408 4872 0.868406 CAGTGGTCGAGAAAGGCAAC 59.132 55.000 0.00 0.00 0.00 4.17
4452 4916 7.918076 TGTCAGTATAGACCCTCAAGAAATTT 58.082 34.615 0.00 0.00 37.73 1.82
4485 4950 4.008074 TGTCAAGGAAATCGAGAAGCTT 57.992 40.909 0.00 0.00 0.00 3.74
4505 4970 3.109619 GACGAGGAGCGAGACTTAATTG 58.890 50.000 0.00 0.00 44.57 2.32
4573 5038 6.548993 AGATTGTGAGAGATGTATGCAGAGTA 59.451 38.462 0.00 0.00 0.00 2.59
4605 5070 3.655777 TGACTTTAGTGTTCAGGGGGATT 59.344 43.478 0.00 0.00 0.00 3.01
4607 5072 2.370849 GTGACTTTAGTGTTCAGGGGGA 59.629 50.000 0.00 0.00 0.00 4.81
4608 5073 2.105821 TGTGACTTTAGTGTTCAGGGGG 59.894 50.000 0.00 0.00 0.00 5.40
4755 5221 8.647143 ACAACCACAAAGAATTATTGAAGTTG 57.353 30.769 23.08 23.08 42.72 3.16
4797 5263 3.950397 TCCAAACAAGCCTCGTGATATT 58.050 40.909 0.00 0.00 0.00 1.28
4866 5332 7.715249 TGACTTTATGAGCACATCTATTTACCC 59.285 37.037 0.00 0.00 37.87 3.69



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.