AutoCloner

Multiple sequence alignment - TraesCS2A01G139500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G139500	chr2A	100.000	3672	0	0	1	3672	84605754	84609425	0.000000e+00	6782.0
1	TraesCS2A01G139500	chr2A	88.850	2018	208	13	1655	3659	85805502	85803489	0.000000e+00	2464.0
2	TraesCS2A01G139500	chr2A	88.448	2017	216	13	1655	3659	85921409	85919398	0.000000e+00	2418.0
3	TraesCS2A01G139500	chr2A	88.848	1883	194	13	1791	3659	86052253	86050373	0.000000e+00	2300.0
4	TraesCS2A01G139500	chr2A	87.676	1923	223	8	1537	3453	85603695	85601781	0.000000e+00	2226.0
5	TraesCS2A01G139500	chr2A	79.141	2119	378	44	1363	3453	85608413	85606331	0.000000e+00	1406.0
6	TraesCS2A01G139500	chr2A	86.809	235	31	0	1428	1662	86054984	86054750	2.810000e-66	263.0
7	TraesCS2A01G139500	chr2A	79.124	388	65	9	5	385	447008857	447008479	1.690000e-63	254.0
8	TraesCS2A01G139500	chr2A	78.393	361	64	9	1035	1391	118476828	118477178	4.770000e-54	222.0
9	TraesCS2A01G139500	chr2A	84.167	120	18	1	1226	1345	83989572	83989690	8.330000e-22	115.0
10	TraesCS2A01G139500	chr2A	77.439	164	33	4	390	550	775083357	775083195	1.090000e-15	95.3
11	TraesCS2A01G139500	chr2D	95.745	2867	112	7	813	3672	83839377	83842240	0.000000e+00	4610.0
12	TraesCS2A01G139500	chr2D	89.492	2246	227	8	1419	3659	85685737	85683496	0.000000e+00	2832.0
13	TraesCS2A01G139500	chr2D	87.632	1892	217	12	1532	3410	84927178	84925291	0.000000e+00	2182.0
14	TraesCS2A01G139500	chr2D	90.120	415	33	7	390	802	83838288	83838696	1.940000e-147	532.0
15	TraesCS2A01G139500	chr2D	79.081	631	81	27	911	1504	84769666	84769050	1.600000e-103	387.0
16	TraesCS2A01G139500	chr2D	82.599	454	52	12	915	1349	85394908	85394463	3.460000e-100	375.0
17	TraesCS2A01G139500	chr2D	81.878	458	57	17	925	1368	85686304	85685859	2.700000e-96	363.0
18	TraesCS2A01G139500	chr2D	83.721	86	11	3	303	386	489702302	489702386	1.090000e-10	78.7
19	TraesCS2A01G139500	chr2B	94.209	2884	132	16	813	3670	135707370	135710244	0.000000e+00	4368.0
20	TraesCS2A01G139500	chr2B	87.652	1976	227	11	1536	3499	136627581	136625611	0.000000e+00	2281.0
21	TraesCS2A01G139500	chr2B	82.105	2157	317	43	1039	3154	167494074	167496202	0.000000e+00	1781.0
22	TraesCS2A01G139500	chr2B	79.698	2118	362	46	1363	3453	136633939	136631863	0.000000e+00	1467.0
23	TraesCS2A01G139500	chr2B	88.836	421	40	3	384	802	135706292	135706707	9.100000e-141	510.0
24	TraesCS2A01G139500	chr2B	86.582	395	39	1	1	381	135704879	135705273	1.220000e-114	424.0
25	TraesCS2A01G139500	chr2B	89.231	65	6	1	739	802	536623579	536623515	3.040000e-11	80.5
26	TraesCS2A01G139500	chr4A	88.806	2019	207	15	1655	3659	349801028	349799015	0.000000e+00	2459.0
27	TraesCS2A01G139500	chr4A	77.720	193	39	4	387	577	629464759	629464569	8.330000e-22	115.0
28	TraesCS2A01G139500	chr1D	80.526	380	47	20	1	367	212039664	212039299	2.170000e-67	267.0
29	TraesCS2A01G139500	chr1D	89.362	47	3	2	758	802	413606957	413607003	1.420000e-04	58.4
30	TraesCS2A01G139500	chr1B	78.534	382	60	18	1	371	304393326	304393696	7.930000e-57	231.0
31	TraesCS2A01G139500	chr1B	78.478	381	59	18	1	371	303250243	303250610	1.030000e-55	228.0
32	TraesCS2A01G139500	chr7A	85.507	207	25	3	1144	1349	571279949	571279747	1.030000e-50	211.0
33	TraesCS2A01G139500	chr7A	79.070	215	39	5	458	669	241282998	241283209	3.820000e-30	143.0
34	TraesCS2A01G139500	chr3A	80.000	290	45	10	74	356	203671764	203671481	6.220000e-48	202.0
35	TraesCS2A01G139500	chr3A	77.350	234	46	7	388	617	659516240	659516470	8.270000e-27	132.0
36	TraesCS2A01G139500	chr3A	77.132	258	38	7	104	356	382983723	382983964	2.980000e-26	130.0
37	TraesCS2A01G139500	chr3A	83.158	95	14	2	94	187	511398051	511398144	6.530000e-13	86.1
38	TraesCS2A01G139500	chr3A	83.158	95	14	2	94	187	511455913	511456006	6.530000e-13	86.1
39	TraesCS2A01G139500	chr3A	82.292	96	15	2	94	187	511426049	511426144	8.450000e-12	82.4
40	TraesCS2A01G139500	chr3D	79.181	293	56	5	393	681	516674209	516673918	8.040000e-47	198.0
41	TraesCS2A01G139500	chr3B	75.875	257	40	7	106	356	382692991	382693231	1.080000e-20	111.0
42	TraesCS2A01G139500	chr5A	89.706	68	2	5	738	802	365962116	365962181	8.450000e-12	82.4
43	TraesCS2A01G139500	chr5D	93.750	48	2	1	756	802	221861114	221861067	1.830000e-08	71.3
44	TraesCS2A01G139500	chr6D	85.246	61	7	2	743	802	346257033	346257092	1.100000e-05	62.1
45	TraesCS2A01G139500	chr1A	100.000	31	0	0	5	35	229138567	229138597	1.420000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G139500	chr2A	84605754	84609425	3671	False	6782.000000	6782	100.000000	1	3672	1	chr2A.!!$F2	3671
1	TraesCS2A01G139500	chr2A	85803489	85805502	2013	True	2464.000000	2464	88.850000	1655	3659	1	chr2A.!!$R1	2004
2	TraesCS2A01G139500	chr2A	85919398	85921409	2011	True	2418.000000	2418	88.448000	1655	3659	1	chr2A.!!$R2	2004
3	TraesCS2A01G139500	chr2A	85601781	85608413	6632	True	1816.000000	2226	83.408500	1363	3453	2	chr2A.!!$R5	2090
4	TraesCS2A01G139500	chr2A	86050373	86054984	4611	True	1281.500000	2300	87.828500	1428	3659	2	chr2A.!!$R6	2231
5	TraesCS2A01G139500	chr2D	83838288	83842240	3952	False	2571.000000	4610	92.932500	390	3672	2	chr2D.!!$F2	3282
6	TraesCS2A01G139500	chr2D	84925291	84927178	1887	True	2182.000000	2182	87.632000	1532	3410	1	chr2D.!!$R2	1878
7	TraesCS2A01G139500	chr2D	85683496	85686304	2808	True	1597.500000	2832	85.685000	925	3659	2	chr2D.!!$R4	2734
8	TraesCS2A01G139500	chr2D	84769050	84769666	616	True	387.000000	387	79.081000	911	1504	1	chr2D.!!$R1	593
9	TraesCS2A01G139500	chr2B	136625611	136627581	1970	True	2281.000000	2281	87.652000	1536	3499	1	chr2B.!!$R1	1963
10	TraesCS2A01G139500	chr2B	167494074	167496202	2128	False	1781.000000	1781	82.105000	1039	3154	1	chr2B.!!$F1	2115
11	TraesCS2A01G139500	chr2B	135704879	135710244	5365	False	1767.333333	4368	89.875667	1	3670	3	chr2B.!!$F2	3669
12	TraesCS2A01G139500	chr2B	136631863	136633939	2076	True	1467.000000	1467	79.698000	1363	3453	1	chr2B.!!$R2	2090
13	TraesCS2A01G139500	chr4A	349799015	349801028	2013	True	2459.000000	2459	88.806000	1655	3659	1	chr4A.!!$R1	2004

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
465	1496	0.037605	GAGTTCCGGGAAAGAAGCGA	60.038	55.0	11.82	0.00	0.00	4.93	F
1417	4697	1.065358	GCATCTGTGTTGTGCATTGC	58.935	50.0	0.46	0.46	38.68	3.56	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1548	4859	0.867753	CTGTAGCTCGCCGATGACAC	60.868	60.000	0.0	0.0	0.00	3.67	R
2771	8497	2.602878	CATGTTGATTGCACAGGCTTC	58.397	47.619	0.0	0.0	41.91	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	5.201713	TCCCAACAAATACATCGCAAAAA	57.798	34.783	0.00	0.00	0.00	1.94
76	77	2.158667	TCACACAAGGAAGAAGGGGAAC	60.159	50.000	0.00	0.00	0.00	3.62
136	151	4.021894	CACCATCTAGGCACTACTATGGAC	60.022	50.000	17.16	0.00	45.33	4.02
139	154	4.790718	TCTAGGCACTACTATGGACTCA	57.209	45.455	0.00	0.00	41.75	3.41
159	174	7.741554	ACTCATAGGTCCTGAAGAAATAACT	57.258	36.000	0.00	0.00	0.00	2.24
168	183	5.939883	TCCTGAAGAAATAACTCACACATGG	59.060	40.000	0.00	0.00	0.00	3.66
202	217	1.963985	AGGTTGATGAAGAGGCCTCT	58.036	50.000	30.40	30.40	42.75	3.69
204	219	1.407989	GGTTGATGAAGAGGCCTCTGG	60.408	57.143	35.77	0.00	40.36	3.86
215	230	2.203126	CCTCTGGCGATGGCTTCC	60.203	66.667	0.00	0.00	39.81	3.46
217	232	3.764160	CTCTGGCGATGGCTTCCCC	62.764	68.421	0.00	0.00	39.81	4.81
251	266	1.003118	CCGGAACAGGACTCCAAATGA	59.997	52.381	0.00	0.00	32.77	2.57
261	276	5.028802	AGGACTCCAAATGAGATCTCTTCA	58.971	41.667	22.95	4.92	44.42	3.02
265	280	6.405538	ACTCCAAATGAGATCTCTTCAGAAC	58.594	40.000	22.95	0.00	44.42	3.01
282	297	2.097791	AGAACAGAGACTCGGCGATAAC	59.902	50.000	11.27	4.98	0.00	1.89
284	299	1.132643	ACAGAGACTCGGCGATAACAC	59.867	52.381	11.27	3.83	0.00	3.32
291	306	2.097791	ACTCGGCGATAACACTCTTCTC	59.902	50.000	11.27	0.00	0.00	2.87
313	328	3.188460	CGAGGAACGACAAATGGTTTCAT	59.812	43.478	0.00	0.00	45.77	2.57
319	334	7.040062	AGGAACGACAAATGGTTTCATCATTTA	60.040	33.333	0.00	0.00	41.28	1.40
424	1455	3.761897	TCCAACCGATCCAACAAAAGAT	58.238	40.909	0.00	0.00	0.00	2.40
425	1456	3.756434	TCCAACCGATCCAACAAAAGATC	59.244	43.478	0.00	0.00	36.38	2.75
428	1459	1.064060	CCGATCCAACAAAAGATCCGC	59.936	52.381	0.00	0.00	36.36	5.54
465	1496	0.037605	GAGTTCCGGGAAAGAAGCGA	60.038	55.000	11.82	0.00	0.00	4.93
533	1565	1.202463	AGATTCGAGGACATCTTGGCG	60.202	52.381	0.00	0.00	0.00	5.69
552	1584	2.678190	GCGAAGAAAGAGGTGGCATACT	60.678	50.000	0.00	0.00	0.00	2.12
564	1596	1.804151	TGGCATACTTCAAACGCTCAC	59.196	47.619	0.00	0.00	0.00	3.51
678	1710	6.369065	GCTCGAAAAGAAGAAGGTTGAGATTA	59.631	38.462	0.00	0.00	0.00	1.75
705	1737	2.584418	CGGCAGAGTGAGCGATGG	60.584	66.667	0.00	0.00	0.00	3.51
821	2539	8.819974	CATACTTCTTTGTGCACATTTCTTTTT	58.180	29.630	22.39	4.10	0.00	1.94
909	2635	2.827755	TCCTACAGCCCAGATACAACA	58.172	47.619	0.00	0.00	0.00	3.33
1417	4697	1.065358	GCATCTGTGTTGTGCATTGC	58.935	50.000	0.46	0.46	38.68	3.56
1510	4821	4.096984	GTGGAGGGCAATGATTTAGTTGAG	59.903	45.833	0.00	0.00	0.00	3.02
1548	4859	1.061799	GCAGAGAACAAATGTGCGCG	61.062	55.000	0.00	0.00	0.00	6.86
1566	4877	1.138883	GTGTCATCGGCGAGCTACA	59.861	57.895	17.22	15.92	0.00	2.74
1649	4960	4.517285	GCTCCATCCAGAAACACAAGATA	58.483	43.478	0.00	0.00	0.00	1.98
1821	7530	5.762218	AGAGAAAAAGGAATGTGACACAGAG	59.238	40.000	14.66	0.00	0.00	3.35
1887	7596	5.697633	ACATTTTGCTCAAAGCTGTAAATGG	59.302	36.000	22.84	13.73	42.41	3.16
2092	7807	6.238648	TCTGGAGAGTAAATTTGGAACCTTC	58.761	40.000	0.00	0.00	0.00	3.46
2192	7912	4.069869	CAGAGGTTGCAGGGTGTG	57.930	61.111	0.00	0.00	0.00	3.82
2593	8318	2.892373	TCTTTGCGTATTTTGGCGAG	57.108	45.000	0.00	0.00	0.00	5.03
2697	8423	3.586174	AGCTGACATCCACATATATGGCT	59.414	43.478	16.96	9.14	39.85	4.75
2792	8518	0.892755	AGCCTGTGCAATCAACATGG	59.107	50.000	0.00	0.00	41.13	3.66
2801	8527	3.384146	TGCAATCAACATGGTTCAGTTGT	59.616	39.130	0.00	0.00	44.08	3.32
3209	8936	7.931015	ATTATCTTGGTAAGGTAGTGGATCA	57.069	36.000	0.00	0.00	0.00	2.92
3273	9000	4.036498	CACCTGAAGACGGACTATATCGTT	59.964	45.833	0.00	0.00	39.88	3.85
3474	9214	7.233348	TGGAGGCAAAAATTCAATAAGTTCTCT	59.767	33.333	0.00	0.00	0.00	3.10
3539	9279	2.665165	ACCATTTGAAGGTGAAGCACA	58.335	42.857	0.00	0.00	38.13	4.57
3558	9298	3.254166	CACAAACTTGGATCCCAGACAAG	59.746	47.826	19.41	12.83	45.27	3.16
3564	9304	5.032846	ACTTGGATCCCAGACAAGAGATTA	58.967	41.667	19.41	0.00	43.13	1.75
3584	9324	2.054799	AGAGTGTGGCCTTCCTGTTTA	58.945	47.619	3.32	0.00	0.00	2.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	5.398603	TTTTGCGATGTATTTGTTGGGAT	57.601	34.783	0.00	0.00	0.00	3.85
23	24	9.710900	ATCTATCTGATGTATTTTTGCGATGTA	57.289	29.630	0.00	0.00	33.43	2.29
46	47	6.208204	CCTTCTTCCTTGTGTGATTGAAATCT	59.792	38.462	4.76	0.00	36.39	2.40
76	77	6.323482	TCTCTCTCTTGGATCTTCAATACCTG	59.677	42.308	0.00	0.00	0.00	4.00
136	151	7.708752	GTGAGTTATTTCTTCAGGACCTATGAG	59.291	40.741	0.00	0.00	0.00	2.90
139	154	7.038302	TGTGTGAGTTATTTCTTCAGGACCTAT	60.038	37.037	0.00	0.00	0.00	2.57
156	171	2.290514	CCTCCATGACCATGTGTGAGTT	60.291	50.000	8.93	0.00	37.11	3.01
159	174	0.035152	GCCTCCATGACCATGTGTGA	60.035	55.000	8.93	0.00	37.11	3.58
168	183	3.620488	TCAACCTTATTGCCTCCATGAC	58.380	45.455	0.00	0.00	0.00	3.06
204	219	4.570874	GGAGGGGGAAGCCATCGC	62.571	72.222	0.00	0.00	40.15	4.58
225	240	4.717313	GTCCTGTTCCGGTGCCCC	62.717	72.222	0.00	0.00	0.00	5.80
232	247	2.028112	TCTCATTTGGAGTCCTGTTCCG	60.028	50.000	11.33	0.00	44.40	4.30
237	252	5.105023	TGAAGAGATCTCATTTGGAGTCCTG	60.105	44.000	24.39	0.07	44.40	3.86
240	255	6.219417	TCTGAAGAGATCTCATTTGGAGTC	57.781	41.667	24.39	8.59	44.40	3.36
241	256	6.013898	TGTTCTGAAGAGATCTCATTTGGAGT	60.014	38.462	24.39	0.00	44.40	3.85
261	276	2.039818	TATCGCCGAGTCTCTGTTCT	57.960	50.000	0.00	0.00	0.00	3.01
265	280	1.402259	AGTGTTATCGCCGAGTCTCTG	59.598	52.381	0.00	0.00	0.00	3.35
291	306	2.546368	TGAAACCATTTGTCGTTCCTCG	59.454	45.455	0.00	0.00	41.41	4.63
313	328	5.068460	CACCGCCATAATTCCCTTTAAATGA	59.932	40.000	0.00	0.00	0.00	2.57
319	334	1.286553	TCCACCGCCATAATTCCCTTT	59.713	47.619	0.00	0.00	0.00	3.11
360	375	4.066139	ATGAGCTTGTGGGCCCCC	62.066	66.667	22.27	8.90	0.00	5.40
381	396	2.868196	GGTTTTCTTCCTCCGCGC	59.132	61.111	0.00	0.00	0.00	6.86
383	398	0.601841	TCACGGTTTTCTTCCTCCGC	60.602	55.000	0.00	0.00	45.76	5.54
428	1459	3.103742	ACTCTCTTCTAGCCTTCTTGGG	58.896	50.000	0.00	0.00	36.00	4.12
438	1469	4.017808	TCTTTCCCGGAACTCTCTTCTAG	58.982	47.826	0.73	0.00	0.00	2.43
465	1496	1.687493	CTTCGCCTTCTCCTCCCCT	60.687	63.158	0.00	0.00	0.00	4.79
493	1524	0.926155	CTTCGTCATCATGGTCGCTG	59.074	55.000	0.00	0.00	0.00	5.18
533	1565	4.579869	TGAAGTATGCCACCTCTTTCTTC	58.420	43.478	0.00	0.00	0.00	2.87
552	1584	1.326245	CTTGACGTGTGAGCGTTTGAA	59.674	47.619	0.00	0.00	45.79	2.69
564	1596	1.236616	TTGCATGCCTCCTTGACGTG	61.237	55.000	16.68	0.00	0.00	4.49
678	1710	2.107750	CTCTGCCGCCGATCATGT	59.892	61.111	0.00	0.00	0.00	3.21
743	1775	1.402787	TCAGTCTGTCTGTCTGTGCA	58.597	50.000	0.00	0.00	43.97	4.57
746	1778	6.849085	AAGAATATCAGTCTGTCTGTCTGT	57.151	37.500	0.00	0.00	43.97	3.41
747	1779	7.601886	ACAAAAGAATATCAGTCTGTCTGTCTG	59.398	37.037	0.00	0.00	43.97	3.51
749	1781	7.600375	TCACAAAAGAATATCAGTCTGTCTGTC	59.400	37.037	0.00	0.00	43.97	3.51
750	1782	7.386299	GTCACAAAAGAATATCAGTCTGTCTGT	59.614	37.037	0.00	0.00	43.97	3.41
753	1785	6.183360	CGGTCACAAAAGAATATCAGTCTGTC	60.183	42.308	0.00	0.00	0.00	3.51
755	1787	5.063944	CCGGTCACAAAAGAATATCAGTCTG	59.936	44.000	0.00	0.00	0.00	3.51
821	2539	0.323629	CTCAGCCCCCACGTAGAAAA	59.676	55.000	0.00	0.00	0.00	2.29
991	2717	3.746889	TGCGCGCATTTGGGGAAG	61.747	61.111	33.09	0.00	0.00	3.46
1103	2841	3.072468	CGAGGTAGGGGTCCGCAA	61.072	66.667	8.89	0.00	0.00	4.85
1172	2917	3.771160	ATCGAGTGGTGCCCGGAC	61.771	66.667	0.73	0.00	0.00	4.79
1214	2959	4.876107	AGATTAGAACGCACGGATTTGAAT	59.124	37.500	0.00	0.00	0.00	2.57
1417	4697	3.485463	TCTTCAACCTACACCACCAAG	57.515	47.619	0.00	0.00	0.00	3.61
1510	4821	2.297033	TGCAAAAAGGTCTGAGCAATCC	59.703	45.455	9.78	0.00	0.00	3.01
1548	4859	0.867753	CTGTAGCTCGCCGATGACAC	60.868	60.000	0.00	0.00	0.00	3.67
1566	4877	2.903635	ATGGACTGTGGCTGCAGCT	61.904	57.895	35.82	18.07	39.96	4.24
1821	7530	5.314923	AGATTGCACATACAACATGAACC	57.685	39.130	0.00	0.00	31.03	3.62
1887	7596	2.033662	GTCGCCAGTTGAGAATAATCGC	60.034	50.000	0.00	0.00	0.00	4.58
2092	7807	4.380867	GGGGCAAAGTTGTGTGAATCATAG	60.381	45.833	0.00	0.00	0.00	2.23
2192	7912	2.095053	GCTGCAGGACTCGAAAATCTTC	59.905	50.000	17.12	0.00	0.00	2.87
2593	8318	4.005650	TGAACATCATCACCAGCTTCTTC	58.994	43.478	0.00	0.00	0.00	2.87
2697	8423	5.491070	CCACTACCATCATGTTCTTTCTCA	58.509	41.667	0.00	0.00	0.00	3.27
2771	8497	2.602878	CATGTTGATTGCACAGGCTTC	58.397	47.619	0.00	0.00	41.91	3.86
2777	8503	2.957680	ACTGAACCATGTTGATTGCACA	59.042	40.909	0.00	0.00	0.00	4.57
2792	8518	3.476552	TCCTTCACATCCACAACTGAAC	58.523	45.455	0.00	0.00	0.00	3.18
2801	8527	3.453868	TGATCTCCTTCCTTCACATCCA	58.546	45.455	0.00	0.00	0.00	3.41
3087	8813	7.556275	TGGACATGTTCAGGGAAGTTAATTATC	59.444	37.037	1.52	0.00	0.00	1.75
3209	8936	7.563556	TCTTCCTTCCCTTGACTGTAAATTTTT	59.436	33.333	0.00	0.00	0.00	1.94
3273	9000	7.013274	GTGCATCCTTTAGACTTATTAATGCCA	59.987	37.037	0.00	0.00	36.92	4.92
3474	9214	6.490381	GTGGTATGGTATCTCTGTAGTCATGA	59.510	42.308	0.00	0.00	0.00	3.07
3539	9279	3.652869	TCTCTTGTCTGGGATCCAAGTTT	59.347	43.478	16.19	0.00	37.45	2.66
3558	9298	2.769095	AGGAAGGCCACACTCTAATCTC	59.231	50.000	5.01	0.00	36.29	2.75
3564	9304	0.846693	AAACAGGAAGGCCACACTCT	59.153	50.000	5.01	0.00	36.29	3.24
3602	9342	0.504384	CTCGAGCACGACAGTTTGTG	59.496	55.000	0.88	3.15	43.81	3.33
3616	9356	1.134877	TCTGCAATGCTCTTCCTCGAG	60.135	52.381	6.82	5.13	0.00	4.04

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.