Multiple sequence alignment - TraesCS2A01G138100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G138100 chr2A 100.000 7049 0 0 1 7049 83818202 83825250 0.000000e+00 13018.0
1 TraesCS2A01G138100 chr2D 92.872 5373 211 74 1746 7049 83132356 83137625 0.000000e+00 7642.0
2 TraesCS2A01G138100 chr2D 89.194 1601 83 34 3 1581 83130824 83132356 0.000000e+00 1916.0
3 TraesCS2A01G138100 chr2B 93.719 3439 136 37 3660 7049 135001146 135004553 0.000000e+00 5081.0
4 TraesCS2A01G138100 chr2B 92.768 1922 97 17 1746 3661 134999157 135001042 0.000000e+00 2741.0
5 TraesCS2A01G138100 chr2B 90.943 1601 86 22 3 1581 134997594 134999157 0.000000e+00 2098.0
6 TraesCS2A01G138100 chr2B 89.583 48 1 3 1555 1600 643266176 643266131 2.750000e-04 58.4
7 TraesCS2A01G138100 chr3A 84.874 119 12 4 1402 1519 509883434 509883547 1.610000e-21 115.0
8 TraesCS2A01G138100 chr1B 86.585 82 9 2 1409 1489 2928402 2928482 9.740000e-14 89.8
9 TraesCS2A01G138100 chr1B 89.362 47 3 2 1557 1602 156593096 156593051 2.750000e-04 58.4
10 TraesCS2A01G138100 chr3D 88.312 77 3 3 1433 1509 35694548 35694478 3.500000e-13 87.9
11 TraesCS2A01G138100 chr7A 94.118 51 1 2 1553 1602 167261687 167261638 7.580000e-10 76.8
12 TraesCS2A01G138100 chr7A 88.000 50 6 0 1553 1602 183841993 183841944 7.640000e-05 60.2
13 TraesCS2A01G138100 chr5A 89.286 56 2 4 1547 1600 30215489 30215436 4.560000e-07 67.6
14 TraesCS2A01G138100 chr7D 91.304 46 4 0 1556 1601 577775936 577775981 5.900000e-06 63.9
15 TraesCS2A01G138100 chr5D 89.362 47 5 0 1556 1602 5804146 5804100 7.640000e-05 60.2
16 TraesCS2A01G138100 chr4A 86.792 53 7 0 1548 1600 659816457 659816509 7.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G138100 chr2A 83818202 83825250 7048 False 13018.000000 13018 100.000000 1 7049 1 chr2A.!!$F1 7048
1 TraesCS2A01G138100 chr2D 83130824 83137625 6801 False 4779.000000 7642 91.033000 3 7049 2 chr2D.!!$F1 7046
2 TraesCS2A01G138100 chr2B 134997594 135004553 6959 False 3306.666667 5081 92.476667 3 7049 3 chr2B.!!$F1 7046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.033306 GTCCTCGTCCTCCCTAACCT 60.033 60.0 0.00 0.0 0.00 3.50 F
123 124 0.033405 CCTCGTCCTCCCTAACCTCA 60.033 60.0 0.00 0.0 0.00 3.86 F
1481 1509 0.107831 TGAACTAAAGCCACGGCACT 59.892 50.0 11.35 0.0 44.88 4.40 F
2203 2236 0.251354 GAGCAGGCATCAGGTGAGAA 59.749 55.0 0.00 0.0 0.00 2.87 F
2747 2780 0.034186 CCCAGCACCTAGGCATTCAA 60.034 55.0 9.30 0.0 35.83 2.69 F
4092 4242 0.250727 TTTTTGAGGAGTCAGGGCGG 60.251 55.0 0.00 0.0 32.98 6.13 F
4748 4901 2.493675 GGAGGTTCCTTGGAAAGCAATC 59.506 50.0 3.39 0.0 44.44 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1150 1158 0.035881 TCCCTGAGTCAGCAGCAAAG 59.964 55.000 15.10 0.0 34.56 2.77 R
1612 1640 0.038744 ATTTCCTGGCTCCACCACTG 59.961 55.000 0.00 0.0 46.36 3.66 R
2305 2338 0.107508 CCCAGGACCTGCTACATGTG 60.108 60.000 16.72 0.0 0.00 3.21 R
3669 3817 1.134007 TGAGCCATCCAAGCACATAGG 60.134 52.381 0.00 0.0 0.00 2.57 R
4723 4876 0.777446 TTTCCAAGGAACCTCCCCTG 59.223 55.000 0.00 0.0 37.19 4.45 R
5494 5650 0.835971 TGCCTCTAGCCAACTGGTCA 60.836 55.000 0.00 0.0 42.71 4.02 R
6514 6725 1.160137 GCTTGAGAAAGCACCGACAT 58.840 50.000 5.60 0.0 44.85 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.613133 ACATTGGTGCATTGCAAAACAC 59.387 40.909 21.02 21.02 41.47 3.32
52 53 2.224428 GGTGCATTGCAAAACACCG 58.776 52.632 28.25 6.70 43.98 4.94
72 73 2.688958 CGTTACCTCGATTTCCCTCTCT 59.311 50.000 0.00 0.00 0.00 3.10
121 122 0.033306 GTCCTCGTCCTCCCTAACCT 60.033 60.000 0.00 0.00 0.00 3.50
123 124 0.033405 CCTCGTCCTCCCTAACCTCA 60.033 60.000 0.00 0.00 0.00 3.86
144 145 1.979155 CTCCACAGACTCCTCCGCA 60.979 63.158 0.00 0.00 0.00 5.69
190 191 2.046892 CGCTGAACCCCTCCACAG 60.047 66.667 0.00 0.00 0.00 3.66
231 233 2.372690 CGGACTCAAACCACGAGCG 61.373 63.158 0.00 0.00 33.58 5.03
262 264 0.178953 AGCACCAAACAGGCAGGAAT 60.179 50.000 0.00 0.00 43.14 3.01
517 519 2.203126 CGGCTTCTCCTCCATGGC 60.203 66.667 6.96 0.00 35.26 4.40
530 532 1.203288 TCCATGGCTGGGTTTGGATTT 60.203 47.619 6.96 0.00 43.34 2.17
531 533 1.207811 CCATGGCTGGGTTTGGATTTC 59.792 52.381 0.00 0.00 39.04 2.17
532 534 1.135024 CATGGCTGGGTTTGGATTTCG 60.135 52.381 0.00 0.00 0.00 3.46
533 535 1.215382 GGCTGGGTTTGGATTTCGC 59.785 57.895 0.00 0.00 0.00 4.70
534 536 1.215382 GCTGGGTTTGGATTTCGCC 59.785 57.895 0.00 0.00 0.00 5.54
535 537 1.506262 CTGGGTTTGGATTTCGCCG 59.494 57.895 0.00 0.00 0.00 6.46
536 538 2.180769 GGGTTTGGATTTCGCCGC 59.819 61.111 0.00 0.00 0.00 6.53
537 539 2.180769 GGTTTGGATTTCGCCGCC 59.819 61.111 0.00 0.00 0.00 6.13
538 540 2.202427 GTTTGGATTTCGCCGCCG 60.202 61.111 0.00 0.00 0.00 6.46
539 541 4.109693 TTTGGATTTCGCCGCCGC 62.110 61.111 0.00 0.00 0.00 6.53
570 578 2.203806 GGAAACCTCCTCCTCCTCG 58.796 63.158 0.00 0.00 38.88 4.63
571 579 0.615261 GGAAACCTCCTCCTCCTCGT 60.615 60.000 0.00 0.00 38.88 4.18
572 580 0.818938 GAAACCTCCTCCTCCTCGTC 59.181 60.000 0.00 0.00 0.00 4.20
573 581 0.410270 AAACCTCCTCCTCCTCGTCT 59.590 55.000 0.00 0.00 0.00 4.18
574 582 0.410270 AACCTCCTCCTCCTCGTCTT 59.590 55.000 0.00 0.00 0.00 3.01
575 583 1.296984 ACCTCCTCCTCCTCGTCTTA 58.703 55.000 0.00 0.00 0.00 2.10
576 584 1.639628 ACCTCCTCCTCCTCGTCTTAA 59.360 52.381 0.00 0.00 0.00 1.85
577 585 2.042706 ACCTCCTCCTCCTCGTCTTAAA 59.957 50.000 0.00 0.00 0.00 1.52
578 586 2.427812 CCTCCTCCTCCTCGTCTTAAAC 59.572 54.545 0.00 0.00 0.00 2.01
596 604 0.968405 ACGTTAAACCCTAGCACGGA 59.032 50.000 0.00 0.00 35.14 4.69
628 636 2.296190 GCGAAATGAACCTGGTTTCCTT 59.704 45.455 14.28 7.06 0.00 3.36
651 659 1.304879 GGCCCCACATGTAAGCCAA 60.305 57.895 21.83 0.00 43.32 4.52
670 678 0.185901 AAGAGCTTGGGCAGTTTCCA 59.814 50.000 0.00 0.00 41.70 3.53
673 681 1.896660 GCTTGGGCAGTTTCCACGA 60.897 57.895 0.00 0.00 38.54 4.35
674 682 1.244019 GCTTGGGCAGTTTCCACGAT 61.244 55.000 0.00 0.00 38.54 3.73
675 683 0.804989 CTTGGGCAGTTTCCACGATC 59.195 55.000 0.00 0.00 33.43 3.69
676 684 0.109532 TTGGGCAGTTTCCACGATCA 59.890 50.000 0.00 0.00 33.43 2.92
683 691 5.465935 GGCAGTTTCCACGATCAAAAATTA 58.534 37.500 0.00 0.00 0.00 1.40
691 699 4.494199 CCACGATCAAAAATTAGACGGCTC 60.494 45.833 0.00 0.00 0.00 4.70
705 713 1.142748 GGCTCAGATCTGACCACGG 59.857 63.158 26.47 17.43 35.46 4.94
769 777 2.365095 CTTATCCGACCGTCTGCCCC 62.365 65.000 0.00 0.00 0.00 5.80
847 855 2.815647 CCGTCTGCTTCCGCTTCC 60.816 66.667 0.00 0.00 36.97 3.46
872 880 1.302949 GTATCCAGTGCCTTGCCCA 59.697 57.895 0.00 0.00 0.00 5.36
887 895 2.432300 CCCACCTCGCCGTAATCCT 61.432 63.158 0.00 0.00 0.00 3.24
913 921 6.183360 TGCCCTAAAATAAAAATCCGTAGCTG 60.183 38.462 0.00 0.00 0.00 4.24
1116 1124 7.463961 TTGTATAGAGAGAAGTCGTTTCCTT 57.536 36.000 0.02 0.00 36.40 3.36
1150 1158 2.639327 GGTGCTGATTGGTGGTGGC 61.639 63.158 0.00 0.00 0.00 5.01
1200 1208 4.570663 CGATCGGTGGCGAGGACC 62.571 72.222 7.38 0.00 0.00 4.46
1310 1336 0.108804 TGAGCTCTAGTTTTCGGCGG 60.109 55.000 16.19 0.00 0.00 6.13
1316 1342 0.108520 CTAGTTTTCGGCGGGTGCTA 60.109 55.000 7.21 4.64 42.25 3.49
1334 1360 3.703556 TGCTACTGCTCTGAGCTAATCTT 59.296 43.478 28.04 10.01 42.97 2.40
1352 1378 3.511477 TCTTATCCTAGCCTCCCATGTC 58.489 50.000 0.00 0.00 0.00 3.06
1393 1419 4.260985 TCGTGGTGATATTTTGTGCATCT 58.739 39.130 0.00 0.00 0.00 2.90
1411 1437 4.561326 GCATCTGTTGGTAAAATGGCACTT 60.561 41.667 0.00 0.00 0.00 3.16
1461 1489 6.637254 GCTTTAGTTCAGCTTTAGTTCAAACC 59.363 38.462 0.00 0.00 34.15 3.27
1477 1505 1.892209 AACCTGAACTAAAGCCACGG 58.108 50.000 0.00 0.00 0.00 4.94
1479 1507 0.605319 CCTGAACTAAAGCCACGGCA 60.605 55.000 11.35 0.00 44.88 5.69
1480 1508 0.517316 CTGAACTAAAGCCACGGCAC 59.483 55.000 11.35 0.00 44.88 5.01
1481 1509 0.107831 TGAACTAAAGCCACGGCACT 59.892 50.000 11.35 0.00 44.88 4.40
1482 1510 1.235724 GAACTAAAGCCACGGCACTT 58.764 50.000 11.35 5.78 44.88 3.16
1523 1551 5.125367 GGGAGTACCTGGTTTGGATAATT 57.875 43.478 3.84 0.00 35.85 1.40
1524 1552 4.887655 GGGAGTACCTGGTTTGGATAATTG 59.112 45.833 3.84 0.00 35.85 2.32
1570 1598 7.733402 GTAGATAAGTACTACCTCTGTCCTG 57.267 44.000 0.00 0.00 35.56 3.86
1580 1608 6.017192 ACTACCTCTGTCCTGAAATGTAAGA 58.983 40.000 0.00 0.00 0.00 2.10
1581 1609 5.153950 ACCTCTGTCCTGAAATGTAAGAC 57.846 43.478 0.00 0.00 0.00 3.01
1582 1610 4.177026 CCTCTGTCCTGAAATGTAAGACG 58.823 47.826 0.00 0.00 0.00 4.18
1583 1611 4.322049 CCTCTGTCCTGAAATGTAAGACGT 60.322 45.833 0.00 0.00 0.00 4.34
1584 1612 5.209818 TCTGTCCTGAAATGTAAGACGTT 57.790 39.130 0.00 0.00 0.00 3.99
1585 1613 5.607477 TCTGTCCTGAAATGTAAGACGTTT 58.393 37.500 0.00 0.00 39.79 3.60
1586 1614 6.053005 TCTGTCCTGAAATGTAAGACGTTTT 58.947 36.000 0.00 0.00 37.43 2.43
1587 1615 6.540914 TCTGTCCTGAAATGTAAGACGTTTTT 59.459 34.615 0.00 0.00 37.43 1.94
1588 1616 6.491394 TGTCCTGAAATGTAAGACGTTTTTG 58.509 36.000 0.00 0.00 37.43 2.44
1589 1617 5.398416 GTCCTGAAATGTAAGACGTTTTTGC 59.602 40.000 0.00 0.00 37.43 3.68
1590 1618 5.066634 TCCTGAAATGTAAGACGTTTTTGCA 59.933 36.000 0.00 1.87 37.43 4.08
1591 1619 5.399301 CCTGAAATGTAAGACGTTTTTGCAG 59.601 40.000 0.00 0.00 37.43 4.41
1592 1620 5.885881 TGAAATGTAAGACGTTTTTGCAGT 58.114 33.333 0.00 0.00 37.43 4.40
1593 1621 6.326375 TGAAATGTAAGACGTTTTTGCAGTT 58.674 32.000 13.89 13.89 37.43 3.16
1594 1622 6.470877 TGAAATGTAAGACGTTTTTGCAGTTC 59.529 34.615 23.95 23.95 41.92 3.01
1595 1623 4.948608 TGTAAGACGTTTTTGCAGTTCA 57.051 36.364 0.00 0.00 0.00 3.18
1596 1624 5.298197 TGTAAGACGTTTTTGCAGTTCAA 57.702 34.783 0.00 0.00 0.00 2.69
1597 1625 5.700846 TGTAAGACGTTTTTGCAGTTCAAA 58.299 33.333 0.00 0.00 42.50 2.69
1598 1626 6.326375 TGTAAGACGTTTTTGCAGTTCAAAT 58.674 32.000 0.00 0.00 43.53 2.32
1599 1627 6.809196 TGTAAGACGTTTTTGCAGTTCAAATT 59.191 30.769 0.00 0.00 43.53 1.82
1600 1628 5.701029 AGACGTTTTTGCAGTTCAAATTG 57.299 34.783 0.00 0.00 43.53 2.32
1601 1629 5.406649 AGACGTTTTTGCAGTTCAAATTGA 58.593 33.333 0.00 0.00 43.53 2.57
1602 1630 5.288472 AGACGTTTTTGCAGTTCAAATTGAC 59.712 36.000 0.00 0.00 43.53 3.18
1603 1631 4.328712 ACGTTTTTGCAGTTCAAATTGACC 59.671 37.500 0.00 0.00 43.53 4.02
1604 1632 4.328440 CGTTTTTGCAGTTCAAATTGACCA 59.672 37.500 0.00 0.00 43.53 4.02
1605 1633 5.559227 GTTTTTGCAGTTCAAATTGACCAC 58.441 37.500 0.00 0.00 43.53 4.16
1606 1634 4.734398 TTTGCAGTTCAAATTGACCACT 57.266 36.364 0.00 0.00 39.58 4.00
1607 1635 3.713858 TGCAGTTCAAATTGACCACTG 57.286 42.857 18.51 18.51 37.94 3.66
1608 1636 3.023119 TGCAGTTCAAATTGACCACTGT 58.977 40.909 21.73 0.00 37.48 3.55
1609 1637 3.066621 TGCAGTTCAAATTGACCACTGTC 59.933 43.478 21.73 16.35 37.48 3.51
1610 1638 3.849645 GCAGTTCAAATTGACCACTGTCG 60.850 47.826 21.73 5.07 44.86 4.35
1611 1639 2.290641 AGTTCAAATTGACCACTGTCGC 59.709 45.455 0.00 0.00 44.86 5.19
1612 1640 1.234821 TCAAATTGACCACTGTCGCC 58.765 50.000 0.00 0.00 44.86 5.54
1613 1641 0.950836 CAAATTGACCACTGTCGCCA 59.049 50.000 0.00 0.00 44.86 5.69
1614 1642 1.069022 CAAATTGACCACTGTCGCCAG 60.069 52.381 0.00 0.00 44.86 4.85
1634 1662 2.397044 TGGTGGAGCCAGGAAATTTT 57.603 45.000 0.00 0.00 43.61 1.82
1635 1663 2.247358 TGGTGGAGCCAGGAAATTTTC 58.753 47.619 0.24 0.24 43.61 2.29
1636 1664 2.247358 GGTGGAGCCAGGAAATTTTCA 58.753 47.619 11.09 0.00 37.17 2.69
1637 1665 2.833943 GGTGGAGCCAGGAAATTTTCAT 59.166 45.455 11.09 0.75 37.17 2.57
1638 1666 3.261643 GGTGGAGCCAGGAAATTTTCATT 59.738 43.478 11.09 0.00 37.17 2.57
1639 1667 4.248058 GTGGAGCCAGGAAATTTTCATTG 58.752 43.478 11.09 8.27 0.00 2.82
1640 1668 3.261390 TGGAGCCAGGAAATTTTCATTGG 59.739 43.478 19.70 19.70 38.34 3.16
1641 1669 3.369787 GGAGCCAGGAAATTTTCATTGGG 60.370 47.826 22.80 12.32 36.81 4.12
1642 1670 2.026915 AGCCAGGAAATTTTCATTGGGC 60.027 45.455 22.80 18.86 36.81 5.36
1643 1671 2.620242 CCAGGAAATTTTCATTGGGCG 58.380 47.619 17.66 0.00 34.30 6.13
1644 1672 2.028203 CCAGGAAATTTTCATTGGGCGT 60.028 45.455 17.66 0.00 34.30 5.68
1645 1673 3.556843 CCAGGAAATTTTCATTGGGCGTT 60.557 43.478 17.66 0.00 34.30 4.84
1646 1674 4.064388 CAGGAAATTTTCATTGGGCGTTT 58.936 39.130 11.09 0.00 0.00 3.60
1647 1675 5.233988 CAGGAAATTTTCATTGGGCGTTTA 58.766 37.500 11.09 0.00 0.00 2.01
1648 1676 5.120053 CAGGAAATTTTCATTGGGCGTTTAC 59.880 40.000 11.09 0.00 0.00 2.01
1649 1677 4.991687 GGAAATTTTCATTGGGCGTTTACA 59.008 37.500 11.09 0.00 0.00 2.41
1650 1678 5.107259 GGAAATTTTCATTGGGCGTTTACAC 60.107 40.000 11.09 0.00 0.00 2.90
1651 1679 4.864704 ATTTTCATTGGGCGTTTACACT 57.135 36.364 0.00 0.00 0.00 3.55
1652 1680 4.657436 TTTTCATTGGGCGTTTACACTT 57.343 36.364 0.00 0.00 0.00 3.16
1653 1681 5.769484 TTTTCATTGGGCGTTTACACTTA 57.231 34.783 0.00 0.00 0.00 2.24
1654 1682 5.769484 TTTCATTGGGCGTTTACACTTAA 57.231 34.783 0.00 0.00 0.00 1.85
1655 1683 4.752661 TCATTGGGCGTTTACACTTAAC 57.247 40.909 0.00 0.00 0.00 2.01
1656 1684 4.135306 TCATTGGGCGTTTACACTTAACA 58.865 39.130 0.00 0.00 0.00 2.41
1657 1685 4.579340 TCATTGGGCGTTTACACTTAACAA 59.421 37.500 0.00 0.00 0.00 2.83
1658 1686 3.967203 TGGGCGTTTACACTTAACAAC 57.033 42.857 0.00 0.00 0.00 3.32
1659 1687 3.543665 TGGGCGTTTACACTTAACAACT 58.456 40.909 0.00 0.00 0.00 3.16
1660 1688 3.946558 TGGGCGTTTACACTTAACAACTT 59.053 39.130 0.00 0.00 0.00 2.66
1661 1689 4.035441 TGGGCGTTTACACTTAACAACTTC 59.965 41.667 0.00 0.00 0.00 3.01
1662 1690 4.274214 GGGCGTTTACACTTAACAACTTCT 59.726 41.667 0.00 0.00 0.00 2.85
1663 1691 5.220912 GGGCGTTTACACTTAACAACTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
1664 1692 5.905733 GGCGTTTACACTTAACAACTTCTTC 59.094 40.000 0.00 0.00 0.00 2.87
1665 1693 6.238293 GGCGTTTACACTTAACAACTTCTTCT 60.238 38.462 0.00 0.00 0.00 2.85
1666 1694 7.184779 GCGTTTACACTTAACAACTTCTTCTT 58.815 34.615 0.00 0.00 0.00 2.52
1667 1695 7.695201 GCGTTTACACTTAACAACTTCTTCTTT 59.305 33.333 0.00 0.00 0.00 2.52
1668 1696 9.550811 CGTTTACACTTAACAACTTCTTCTTTT 57.449 29.630 0.00 0.00 0.00 2.27
1680 1708 9.860898 ACAACTTCTTCTTTTAATATCAATGGC 57.139 29.630 0.00 0.00 0.00 4.40
1681 1709 9.859427 CAACTTCTTCTTTTAATATCAATGGCA 57.141 29.630 0.00 0.00 0.00 4.92
1694 1722 8.481492 AATATCAATGGCAATATTTGTCCAGA 57.519 30.769 0.00 1.84 39.17 3.86
1695 1723 5.840243 TCAATGGCAATATTTGTCCAGAG 57.160 39.130 0.00 3.27 39.17 3.35
1696 1724 4.646040 TCAATGGCAATATTTGTCCAGAGG 59.354 41.667 0.00 0.00 39.17 3.69
1697 1725 2.378038 TGGCAATATTTGTCCAGAGGC 58.622 47.619 0.00 0.00 33.81 4.70
1698 1726 2.291475 TGGCAATATTTGTCCAGAGGCA 60.291 45.455 0.00 0.00 33.81 4.75
1699 1727 2.099756 GGCAATATTTGTCCAGAGGCAC 59.900 50.000 0.00 0.00 0.00 5.01
1700 1728 6.643724 TGGCAATATTTGTCCAGAGGCACT 62.644 45.833 0.00 0.00 35.23 4.40
1701 1729 4.199310 GCAATATTTGTCCAGAGGCACTA 58.801 43.478 0.00 0.00 41.55 2.74
1702 1730 4.823989 GCAATATTTGTCCAGAGGCACTAT 59.176 41.667 0.00 0.00 41.55 2.12
1703 1731 5.997746 GCAATATTTGTCCAGAGGCACTATA 59.002 40.000 0.00 0.00 41.55 1.31
1704 1732 6.656693 GCAATATTTGTCCAGAGGCACTATAT 59.343 38.462 0.00 0.00 41.55 0.86
1705 1733 7.824289 GCAATATTTGTCCAGAGGCACTATATA 59.176 37.037 0.00 0.00 41.55 0.86
1706 1734 9.896645 CAATATTTGTCCAGAGGCACTATATAT 57.103 33.333 0.00 0.00 41.55 0.86
1707 1735 9.896645 AATATTTGTCCAGAGGCACTATATATG 57.103 33.333 0.00 0.00 41.55 1.78
1708 1736 4.808414 TGTCCAGAGGCACTATATATGC 57.192 45.455 0.00 8.01 41.55 3.14
1709 1737 4.420206 TGTCCAGAGGCACTATATATGCT 58.580 43.478 13.37 4.28 41.55 3.79
1710 1738 4.840680 TGTCCAGAGGCACTATATATGCTT 59.159 41.667 13.37 8.46 41.55 3.91
1711 1739 6.016555 TGTCCAGAGGCACTATATATGCTTA 58.983 40.000 13.37 0.00 41.55 3.09
1712 1740 6.496911 TGTCCAGAGGCACTATATATGCTTAA 59.503 38.462 13.37 0.00 41.55 1.85
1713 1741 7.038659 GTCCAGAGGCACTATATATGCTTAAG 58.961 42.308 13.37 0.00 41.55 1.85
1714 1742 6.954102 TCCAGAGGCACTATATATGCTTAAGA 59.046 38.462 6.67 0.00 41.55 2.10
1715 1743 7.454694 TCCAGAGGCACTATATATGCTTAAGAA 59.545 37.037 6.67 0.00 41.55 2.52
1716 1744 8.097038 CCAGAGGCACTATATATGCTTAAGAAA 58.903 37.037 6.67 0.00 41.55 2.52
1717 1745 9.149225 CAGAGGCACTATATATGCTTAAGAAAG 57.851 37.037 6.67 0.00 41.55 2.62
1735 1763 9.905713 TTAAGAAAGCCTCATGTTATCATAAGT 57.094 29.630 0.00 0.00 32.47 2.24
1736 1764 8.814038 AAGAAAGCCTCATGTTATCATAAGTT 57.186 30.769 0.00 0.00 32.47 2.66
1737 1765 8.443953 AGAAAGCCTCATGTTATCATAAGTTC 57.556 34.615 0.00 0.00 32.47 3.01
1738 1766 8.049117 AGAAAGCCTCATGTTATCATAAGTTCA 58.951 33.333 0.00 0.00 32.47 3.18
1739 1767 7.798596 AAGCCTCATGTTATCATAAGTTCAG 57.201 36.000 0.00 0.00 32.47 3.02
1740 1768 6.893583 AGCCTCATGTTATCATAAGTTCAGT 58.106 36.000 0.00 0.00 32.47 3.41
1741 1769 8.023021 AGCCTCATGTTATCATAAGTTCAGTA 57.977 34.615 0.00 0.00 32.47 2.74
1742 1770 8.147058 AGCCTCATGTTATCATAAGTTCAGTAG 58.853 37.037 0.00 0.00 32.47 2.57
1743 1771 8.144478 GCCTCATGTTATCATAAGTTCAGTAGA 58.856 37.037 0.00 0.00 32.47 2.59
1849 1877 3.726607 CAAGTATCAGCTAGCAAGGGAG 58.273 50.000 18.83 0.00 0.00 4.30
1906 1934 7.324856 GCATGAACTCACTGAGATATACTAACG 59.675 40.741 13.25 0.00 33.32 3.18
1919 1947 7.152645 AGATATACTAACGTAGGCATTGGTTG 58.847 38.462 0.00 0.00 0.00 3.77
1948 1976 2.203728 TACCTGCCACCGTCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
1993 2022 2.203523 TGCCCATTGCTGCAGTGT 60.204 55.556 21.33 0.00 42.00 3.55
1994 2023 1.833492 TGCCCATTGCTGCAGTGTT 60.833 52.632 21.33 0.00 42.00 3.32
1995 2024 1.373748 GCCCATTGCTGCAGTGTTG 60.374 57.895 21.33 13.94 36.87 3.33
2044 2073 2.332654 GCCGCTGGAAACCGTGAAT 61.333 57.895 0.00 0.00 0.00 2.57
2058 2087 0.727122 GTGAATGTGCACTGCGCTTC 60.727 55.000 19.41 14.98 43.06 3.86
2106 2135 0.888285 GTCACCTGCTCAGCTTGCTT 60.888 55.000 0.00 0.00 0.00 3.91
2112 2141 1.674980 GCTCAGCTTGCTTCCTGCT 60.675 57.895 0.00 0.00 43.37 4.24
2138 2171 1.228245 TGTGACTGCCTCCCTTTGC 60.228 57.895 0.00 0.00 0.00 3.68
2148 2181 2.996734 CCCTTTGCCCGTTGCCAT 60.997 61.111 0.00 0.00 40.16 4.40
2186 2219 1.801178 GCTCCGTTTTCAGGTTCAGAG 59.199 52.381 0.00 0.00 0.00 3.35
2202 2235 0.616964 AGAGCAGGCATCAGGTGAGA 60.617 55.000 0.00 0.00 0.00 3.27
2203 2236 0.251354 GAGCAGGCATCAGGTGAGAA 59.749 55.000 0.00 0.00 0.00 2.87
2204 2237 0.917533 AGCAGGCATCAGGTGAGAAT 59.082 50.000 0.00 0.00 0.00 2.40
2205 2238 1.022735 GCAGGCATCAGGTGAGAATG 58.977 55.000 0.00 0.00 0.00 2.67
2206 2239 1.681166 GCAGGCATCAGGTGAGAATGT 60.681 52.381 0.00 0.00 0.00 2.71
2207 2240 2.014857 CAGGCATCAGGTGAGAATGTG 58.985 52.381 0.00 0.00 0.00 3.21
2208 2241 1.911357 AGGCATCAGGTGAGAATGTGA 59.089 47.619 0.00 0.00 0.00 3.58
2209 2242 2.093075 AGGCATCAGGTGAGAATGTGAG 60.093 50.000 0.00 0.00 0.00 3.51
2238 2271 2.751806 GAGCAAGAGAAACATGGGAAGG 59.248 50.000 0.00 0.00 0.00 3.46
2305 2338 2.427453 TCGGAAGAAGCAGGACATAGAC 59.573 50.000 0.00 0.00 37.03 2.59
2398 2431 2.957491 TGCTAATTTTCATTGGGCCG 57.043 45.000 0.00 0.00 0.00 6.13
2418 2451 2.674177 CGCCGAACTACTCTGGATGTTT 60.674 50.000 0.00 0.00 0.00 2.83
2435 2468 1.532437 GTTTTTGGCAAATGAGCTGGC 59.468 47.619 14.29 0.00 39.69 4.85
2448 2481 1.812922 GCTGGCTGGTCATGACTCG 60.813 63.158 24.50 16.26 0.00 4.18
2529 2562 4.925054 GCAGCATAATTTGTTCTTCTGCAA 59.075 37.500 6.08 0.00 43.49 4.08
2530 2563 5.406175 GCAGCATAATTTGTTCTTCTGCAAA 59.594 36.000 6.08 0.00 43.49 3.68
2541 2574 5.218139 GTTCTTCTGCAAAATCCAAGAGTG 58.782 41.667 0.00 0.00 0.00 3.51
2567 2600 7.063426 GCTGGATTTATCTTGTTGGCTTTAAAC 59.937 37.037 0.00 0.00 0.00 2.01
2568 2601 7.957002 TGGATTTATCTTGTTGGCTTTAAACA 58.043 30.769 0.00 0.00 35.78 2.83
2613 2646 4.379918 GCAATTCCTAGTTTTGCCTCTGTC 60.380 45.833 9.28 0.00 39.80 3.51
2679 2712 1.436195 GGTGTTCTGCTGACGCACAA 61.436 55.000 20.86 0.00 42.25 3.33
2680 2713 0.041839 GTGTTCTGCTGACGCACAAG 60.042 55.000 17.03 0.00 42.25 3.16
2681 2714 1.082496 GTTCTGCTGACGCACAAGC 60.082 57.895 0.00 0.00 42.25 4.01
2712 2745 2.429250 TGCCTAGTGTGATTAAGCGCTA 59.571 45.455 12.05 0.00 0.00 4.26
2734 2767 1.514678 CGTACTGCTTTTGCCCAGCA 61.515 55.000 2.00 2.00 45.21 4.41
2738 2771 0.895100 CTGCTTTTGCCCAGCACCTA 60.895 55.000 0.00 0.00 42.49 3.08
2744 2777 2.276740 GCCCAGCACCTAGGCATT 59.723 61.111 9.30 0.00 46.34 3.56
2746 2779 1.609239 CCCAGCACCTAGGCATTCA 59.391 57.895 9.30 0.00 35.83 2.57
2747 2780 0.034186 CCCAGCACCTAGGCATTCAA 60.034 55.000 9.30 0.00 35.83 2.69
2830 2863 7.519649 GCATTTACTTCAGATATGGTCAAGAGC 60.520 40.741 0.00 0.00 0.00 4.09
2912 2955 8.614346 TCATTTGGTATACTTGGTTAAATACGC 58.386 33.333 2.25 0.00 0.00 4.42
2918 2961 9.281075 GGTATACTTGGTTAAATACGCAAAAAG 57.719 33.333 2.25 0.00 0.00 2.27
3044 3088 6.493189 TCAGATACACCACTTATATGCCAA 57.507 37.500 0.00 0.00 0.00 4.52
3280 3324 6.043474 TGGTACCTGGTAATGTGTTCTAGTTT 59.957 38.462 14.36 0.00 0.00 2.66
3307 3351 4.161333 GTTGTTGCTCTGTCAATACATGC 58.839 43.478 0.00 0.00 34.37 4.06
3312 3356 4.074259 TGCTCTGTCAATACATGCAGTTT 58.926 39.130 0.00 0.00 38.89 2.66
3326 3370 7.703058 ACATGCAGTTTAATTTAGCCTTAGT 57.297 32.000 0.00 0.00 0.00 2.24
3327 3371 8.122472 ACATGCAGTTTAATTTAGCCTTAGTT 57.878 30.769 0.00 0.00 0.00 2.24
3411 3455 4.674281 GGTTATAACCTCCCTCTGTCTG 57.326 50.000 24.79 0.00 45.75 3.51
3425 3469 4.080807 CCTCTGTCTGTACTCTGGAGTCTA 60.081 50.000 6.52 0.00 42.54 2.59
3484 3528 4.550076 AGAAGAGCATATGCATCCCTAC 57.450 45.455 28.62 12.81 45.16 3.18
3534 3578 8.592809 AGAAAATGTGTTAGAATTAATGGCCAA 58.407 29.630 10.96 0.00 0.00 4.52
3535 3579 9.213799 GAAAATGTGTTAGAATTAATGGCCAAA 57.786 29.630 10.96 0.00 0.00 3.28
3542 3586 5.151297 AGAATTAATGGCCAAAACTGTGG 57.849 39.130 10.96 0.00 42.05 4.17
3591 3635 2.397549 CACAAAACTAAGCTTGGCTGC 58.602 47.619 9.86 0.00 39.62 5.25
3608 3652 5.683681 TGGCTGCTGATGTTAAATCATCTA 58.316 37.500 0.00 0.00 43.03 1.98
3718 3867 6.129326 CGAGAGCAGCTAACAGTATTATTTCG 60.129 42.308 0.00 0.00 0.00 3.46
3757 3906 4.040217 TCAGTACCCACTTTAGCCGTTAAA 59.960 41.667 0.00 0.00 30.46 1.52
3773 3922 5.063880 CCGTTAAATCCTTAGCTTAGGCAT 58.936 41.667 14.12 5.97 41.70 4.40
3973 4123 5.470098 TGATACCTTGCAAGTTCAGTTCTTC 59.530 40.000 24.35 12.50 0.00 2.87
4021 4171 1.820581 GGCACTGGGCGTGTCTATA 59.179 57.895 0.00 0.00 44.79 1.31
4092 4242 0.250727 TTTTTGAGGAGTCAGGGCGG 60.251 55.000 0.00 0.00 32.98 6.13
4113 4263 3.566523 GACTCTTGTACGTGGAACTCTG 58.433 50.000 0.00 0.00 31.75 3.35
4317 4467 6.998074 TCATTGAGTTTCAAGGTACTGTGAAT 59.002 34.615 11.05 0.61 40.05 2.57
4331 4481 8.908903 AGGTACTGTGAATTTTTGTTGACATAA 58.091 29.630 0.00 0.00 37.18 1.90
4366 4517 5.241728 AGTCCCTTACTTTTGTTCTGCATTC 59.758 40.000 0.00 0.00 33.35 2.67
4735 4888 3.953542 ATGATTAACAGGGGAGGTTCC 57.046 47.619 0.00 0.00 35.23 3.62
4748 4901 2.493675 GGAGGTTCCTTGGAAAGCAATC 59.506 50.000 3.39 0.00 44.44 2.67
4755 4908 3.077359 CCTTGGAAAGCAATCTCGTTCT 58.923 45.455 0.00 0.00 44.44 3.01
4768 4921 6.638468 GCAATCTCGTTCTTTTTCTGTTCAAT 59.362 34.615 0.00 0.00 0.00 2.57
4815 4968 7.420002 TGTGCTTGACATCATTAGAATTATGC 58.580 34.615 0.00 0.00 0.00 3.14
4848 5001 9.529325 TTATCTTGATCACCGAGTAGTATTTTG 57.471 33.333 0.00 0.00 0.00 2.44
5404 5560 9.630098 ACATGTTAATAATGAAGCTGTTTCTTG 57.370 29.630 5.84 0.00 36.71 3.02
5440 5596 8.149631 TCATTGTGGATAATCCTGAGCATATA 57.850 34.615 0.00 0.00 37.46 0.86
5441 5597 8.775151 TCATTGTGGATAATCCTGAGCATATAT 58.225 33.333 0.00 0.00 37.46 0.86
5581 5742 0.678048 GGGTGCCTCATGGTTGTCTC 60.678 60.000 0.00 0.00 35.27 3.36
5695 5868 6.712547 GCCTACCACTCTAAATGATTAAGCAT 59.287 38.462 0.00 0.00 0.00 3.79
5790 5973 5.902613 TTGACATTCCAGGCTTCATTTAG 57.097 39.130 0.00 0.00 0.00 1.85
5791 5974 3.696051 TGACATTCCAGGCTTCATTTAGC 59.304 43.478 0.00 0.00 40.48 3.09
5792 5975 3.696051 GACATTCCAGGCTTCATTTAGCA 59.304 43.478 0.00 0.00 43.02 3.49
5793 5976 4.284178 ACATTCCAGGCTTCATTTAGCAT 58.716 39.130 0.00 0.00 43.02 3.79
5794 5977 4.713321 ACATTCCAGGCTTCATTTAGCATT 59.287 37.500 0.00 0.00 43.02 3.56
5795 5978 5.188359 ACATTCCAGGCTTCATTTAGCATTT 59.812 36.000 0.00 0.00 43.02 2.32
5846 6029 5.707298 TGTTTTTCTCCTGAATCATCTCCAC 59.293 40.000 0.00 0.00 31.56 4.02
5876 6059 4.922206 TGTTGATAAGCATCTTTCCCTGT 58.078 39.130 0.00 0.00 31.93 4.00
5886 6069 3.926058 TCTTTCCCTGTTACCTATGCC 57.074 47.619 0.00 0.00 0.00 4.40
5888 6071 0.834612 TTCCCTGTTACCTATGCCCG 59.165 55.000 0.00 0.00 0.00 6.13
5900 6083 8.377034 TGTTACCTATGCCCGTATTATATTGTT 58.623 33.333 0.00 0.00 0.00 2.83
5921 6104 2.964464 TGCCACCAAAATGTTCATGAGT 59.036 40.909 0.00 0.00 0.00 3.41
6018 6201 1.134367 CCACTCTGCCGACGAAGAATA 59.866 52.381 0.00 0.00 0.00 1.75
6061 6244 2.283298 GTCACTGATGGCACTACATGG 58.717 52.381 0.00 0.00 0.00 3.66
6106 6289 2.174639 ACCAGGTGAACCACATCTTTCA 59.825 45.455 1.62 0.00 37.96 2.69
6130 6313 5.568620 AACCACCTGATACTTCAAGTTCT 57.431 39.130 0.00 0.00 0.00 3.01
6132 6315 4.593206 ACCACCTGATACTTCAAGTTCTGA 59.407 41.667 0.00 0.00 0.00 3.27
6134 6317 6.176183 CCACCTGATACTTCAAGTTCTGATT 58.824 40.000 0.00 0.00 32.78 2.57
6148 6331 3.818787 GATTGCCGTGGCTGCCAG 61.819 66.667 24.10 12.90 42.51 4.85
6149 6332 4.666253 ATTGCCGTGGCTGCCAGT 62.666 61.111 24.10 1.12 42.51 4.00
6208 6391 4.209911 GCTTGTGAATTGGAGTTTTGCTTC 59.790 41.667 0.00 0.00 0.00 3.86
6213 6396 4.402155 TGAATTGGAGTTTTGCTTCACTGT 59.598 37.500 0.00 0.00 31.02 3.55
6219 6402 4.016113 AGTTTTGCTTCACTGTCGAAAC 57.984 40.909 0.00 3.20 35.42 2.78
6220 6403 3.689649 AGTTTTGCTTCACTGTCGAAACT 59.310 39.130 6.72 6.72 38.76 2.66
6222 6405 3.944422 TTGCTTCACTGTCGAAACTTC 57.056 42.857 0.00 0.00 0.00 3.01
6223 6406 2.899976 TGCTTCACTGTCGAAACTTCA 58.100 42.857 0.00 0.00 0.00 3.02
6360 6570 7.507733 AGTAGTAGTATTTACTGGTGGATCG 57.492 40.000 0.45 0.00 37.10 3.69
6441 6652 7.776618 TCTTCTGATATATATTGGACACCGT 57.223 36.000 0.00 0.00 0.00 4.83
6443 6654 7.670140 TCTTCTGATATATATTGGACACCGTCT 59.330 37.037 0.00 0.00 32.47 4.18
6444 6655 7.158099 TCTGATATATATTGGACACCGTCTG 57.842 40.000 0.00 0.00 32.47 3.51
6466 6677 3.607422 TTTGATGTTCTTGTGTGCTCG 57.393 42.857 0.00 0.00 0.00 5.03
6494 6705 4.759693 TCGTTTGATTTTGTCTAGCCACAT 59.240 37.500 0.00 0.00 0.00 3.21
6585 6797 6.727824 CTGTTATCAACGGTCAAGATTCTT 57.272 37.500 0.00 0.00 33.03 2.52
6632 6846 1.540267 TTAGGGCAAATCCAACGGTG 58.460 50.000 0.00 0.00 36.21 4.94
6721 6936 0.612744 AACTCCAGCAGCTCTCCTTC 59.387 55.000 0.00 0.00 0.00 3.46
6741 6956 4.517952 TCAACATTGTGCCATGGTTAAG 57.482 40.909 14.67 1.64 0.00 1.85
6774 6994 1.260561 TGAGCGTTCAAAAGAGTTCGC 59.739 47.619 0.00 0.00 43.16 4.70
6775 6995 1.583054 AGCGTTCAAAAGAGTTCGCT 58.417 45.000 4.09 4.09 46.92 4.93
6776 6996 1.663494 GCGTTCAAAAGAGTTCGCTG 58.337 50.000 0.00 0.00 40.39 5.18
6777 6997 1.003866 GCGTTCAAAAGAGTTCGCTGT 60.004 47.619 0.00 0.00 40.39 4.40
6778 6998 2.629022 CGTTCAAAAGAGTTCGCTGTG 58.371 47.619 0.00 0.00 0.00 3.66
6847 7067 3.039134 CCAAACAACCTCACGGGC 58.961 61.111 0.00 0.00 39.10 6.13
6848 7068 1.826054 CCAAACAACCTCACGGGCA 60.826 57.895 0.00 0.00 39.10 5.36
6901 7121 2.509336 GTGGCGACGTGGATGAGG 60.509 66.667 0.11 0.00 0.00 3.86
6902 7122 2.678580 TGGCGACGTGGATGAGGA 60.679 61.111 0.11 0.00 0.00 3.71
6903 7123 2.202756 GGCGACGTGGATGAGGAC 60.203 66.667 0.11 0.00 0.00 3.85
6927 7147 0.037605 GGTACATCGGGAATAGCCGG 60.038 60.000 0.00 0.00 37.63 6.13
6955 7175 0.610687 GTGAAGACTCCCAGTCCCAG 59.389 60.000 0.00 0.00 46.18 4.45
7027 7249 1.500303 TCCCAATCCCAATCCCATCTG 59.500 52.381 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.692749 CGTAATCATGGTTCAGTAGTATATGTT 57.307 33.333 0.00 0.00 0.00 2.71
19 20 5.342433 CAATGCACCAATGTTCGTAATCAT 58.658 37.500 0.00 0.00 0.00 2.45
50 51 1.755380 AGAGGGAAATCGAGGTAACGG 59.245 52.381 0.00 0.00 46.39 4.44
52 53 3.738590 GCAGAGAGGGAAATCGAGGTAAC 60.739 52.174 0.00 0.00 0.00 2.50
121 122 1.633774 GAGGAGTCTGTGGAGGTTGA 58.366 55.000 0.00 0.00 0.00 3.18
123 124 0.900647 CGGAGGAGTCTGTGGAGGTT 60.901 60.000 0.00 0.00 0.00 3.50
165 166 0.106918 AGGGGTTCAGCGTGTTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
190 191 1.340889 TGGGTTTGTTTCTGCAGATGC 59.659 47.619 19.04 13.72 42.50 3.91
231 233 3.368571 GGTGCTTGGAGTGGCTGC 61.369 66.667 0.00 0.00 0.00 5.25
262 264 3.744719 CGTCCGGTGAGGCTTCGA 61.745 66.667 0.00 0.00 40.77 3.71
517 519 1.506262 CGGCGAAATCCAAACCCAG 59.494 57.895 0.00 0.00 0.00 4.45
570 578 5.388786 CGTGCTAGGGTTTAACGTTTAAGAC 60.389 44.000 5.91 0.00 0.00 3.01
571 579 4.685628 CGTGCTAGGGTTTAACGTTTAAGA 59.314 41.667 5.91 0.00 0.00 2.10
572 580 4.143052 CCGTGCTAGGGTTTAACGTTTAAG 60.143 45.833 5.91 0.00 32.53 1.85
573 581 3.745458 CCGTGCTAGGGTTTAACGTTTAA 59.255 43.478 5.91 0.00 32.53 1.52
574 582 3.006323 TCCGTGCTAGGGTTTAACGTTTA 59.994 43.478 5.91 0.00 32.53 2.01
575 583 2.145536 CCGTGCTAGGGTTTAACGTTT 58.854 47.619 5.91 0.00 32.53 3.60
576 584 1.344114 TCCGTGCTAGGGTTTAACGTT 59.656 47.619 5.88 5.88 32.53 3.99
577 585 0.968405 TCCGTGCTAGGGTTTAACGT 59.032 50.000 0.00 0.00 32.53 3.99
578 586 1.353076 GTCCGTGCTAGGGTTTAACG 58.647 55.000 0.00 0.00 0.00 3.18
579 587 1.676916 GGGTCCGTGCTAGGGTTTAAC 60.677 57.143 0.00 0.00 0.00 2.01
596 604 2.034879 CATTTCGCTGCTCGTGGGT 61.035 57.895 0.00 0.00 39.67 4.51
628 636 2.497792 CTTACATGTGGGGCCAGGCA 62.498 60.000 15.19 0.35 0.00 4.75
651 659 0.185901 TGGAAACTGCCCAAGCTCTT 59.814 50.000 0.00 0.00 40.80 2.85
658 666 0.109532 TTGATCGTGGAAACTGCCCA 59.890 50.000 0.00 0.00 0.00 5.36
663 671 6.348213 CCGTCTAATTTTTGATCGTGGAAACT 60.348 38.462 0.00 0.00 0.00 2.66
667 675 3.372822 GCCGTCTAATTTTTGATCGTGGA 59.627 43.478 0.00 0.00 0.00 4.02
670 678 4.250464 TGAGCCGTCTAATTTTTGATCGT 58.750 39.130 0.00 0.00 0.00 3.73
673 681 6.259608 CAGATCTGAGCCGTCTAATTTTTGAT 59.740 38.462 18.34 0.00 0.00 2.57
674 682 5.582269 CAGATCTGAGCCGTCTAATTTTTGA 59.418 40.000 18.34 0.00 0.00 2.69
675 683 5.582269 TCAGATCTGAGCCGTCTAATTTTTG 59.418 40.000 21.67 0.00 34.14 2.44
676 684 5.582665 GTCAGATCTGAGCCGTCTAATTTTT 59.417 40.000 25.76 0.00 40.75 1.94
691 699 1.517257 GCGTCCGTGGTCAGATCTG 60.517 63.158 17.07 17.07 0.00 2.90
748 756 1.944676 GCAGACGGTCGGATAAGCG 60.945 63.158 12.54 0.00 45.19 4.68
769 777 0.882042 ACTGCTTTGCTGAGACGTGG 60.882 55.000 0.00 0.00 0.00 4.94
810 818 1.406539 GCAATGGTCATGGTCATGGTC 59.593 52.381 10.61 5.21 39.24 4.02
811 819 1.477553 GCAATGGTCATGGTCATGGT 58.522 50.000 10.61 0.00 39.24 3.55
812 820 0.748450 GGCAATGGTCATGGTCATGG 59.252 55.000 10.61 0.00 39.24 3.66
813 821 0.382873 CGGCAATGGTCATGGTCATG 59.617 55.000 4.67 4.67 40.09 3.07
814 822 0.034186 ACGGCAATGGTCATGGTCAT 60.034 50.000 0.00 0.00 0.00 3.06
815 823 0.676466 GACGGCAATGGTCATGGTCA 60.676 55.000 0.00 0.00 34.56 4.02
847 855 1.048601 AGGCACTGGATACCATACCG 58.951 55.000 0.00 0.00 37.18 4.02
872 880 1.153429 GCAAGGATTACGGCGAGGT 60.153 57.895 16.62 0.00 0.00 3.85
887 895 6.378848 AGCTACGGATTTTTATTTTAGGGCAA 59.621 34.615 0.00 0.00 0.00 4.52
990 998 3.982372 GACCAACATCTCGCGCGGA 62.982 63.158 31.69 25.23 0.00 5.54
1091 1099 7.463961 AGGAAACGACTTCTCTCTATACAAA 57.536 36.000 0.00 0.00 34.17 2.83
1106 1114 1.439679 ATCGCCAAGAAGGAAACGAC 58.560 50.000 0.00 0.00 41.22 4.34
1116 1124 0.322456 CACCCCAGAAATCGCCAAGA 60.322 55.000 0.00 0.00 0.00 3.02
1150 1158 0.035881 TCCCTGAGTCAGCAGCAAAG 59.964 55.000 15.10 0.00 34.56 2.77
1200 1208 1.660560 CCAAATCCTTCAGGCTGCCG 61.661 60.000 13.96 8.60 34.44 5.69
1310 1336 1.107114 TAGCTCAGAGCAGTAGCACC 58.893 55.000 24.64 0.00 45.56 5.01
1316 1342 5.147032 AGGATAAGATTAGCTCAGAGCAGT 58.853 41.667 24.64 9.43 45.56 4.40
1334 1360 1.550179 CCGACATGGGAGGCTAGGATA 60.550 57.143 0.00 0.00 0.00 2.59
1352 1378 0.314935 AGCTGCAAACCAAATCACCG 59.685 50.000 1.02 0.00 0.00 4.94
1393 1419 3.571590 AGGAAGTGCCATTTTACCAACA 58.428 40.909 0.00 0.00 40.02 3.33
1431 1459 1.523758 AAGCTGAACTAAAGCCACGG 58.476 50.000 0.00 0.00 41.82 4.94
1461 1489 0.517316 GTGCCGTGGCTTTAGTTCAG 59.483 55.000 12.84 0.00 42.51 3.02
1494 1522 0.397254 ACCAGGTACTCCCTCCGATG 60.397 60.000 0.00 0.00 43.86 3.84
1498 1526 0.618981 CCAAACCAGGTACTCCCTCC 59.381 60.000 0.00 0.00 43.86 4.30
1512 1540 6.426633 CCAAAGAAACCACCAATTATCCAAAC 59.573 38.462 0.00 0.00 0.00 2.93
1520 1548 4.018870 ACAAACCCAAAGAAACCACCAATT 60.019 37.500 0.00 0.00 0.00 2.32
1523 1551 2.541466 ACAAACCCAAAGAAACCACCA 58.459 42.857 0.00 0.00 0.00 4.17
1524 1552 3.069016 CCTACAAACCCAAAGAAACCACC 59.931 47.826 0.00 0.00 0.00 4.61
1567 1595 5.277825 TGCAAAAACGTCTTACATTTCAGG 58.722 37.500 0.00 0.00 0.00 3.86
1569 1597 5.885881 ACTGCAAAAACGTCTTACATTTCA 58.114 33.333 0.00 0.00 0.00 2.69
1570 1598 6.470877 TGAACTGCAAAAACGTCTTACATTTC 59.529 34.615 0.00 0.00 0.00 2.17
1583 1611 8.738722 GACAGTGGTCAATTTGAACTGCAAAAA 61.739 37.037 22.46 0.00 44.98 1.94
1584 1612 7.338475 GACAGTGGTCAATTTGAACTGCAAAA 61.338 38.462 22.46 0.00 44.98 2.44
1585 1613 5.906841 GACAGTGGTCAATTTGAACTGCAAA 60.907 40.000 22.46 0.00 45.41 3.68
1586 1614 3.446873 ACAGTGGTCAATTTGAACTGCAA 59.553 39.130 22.46 0.73 38.26 4.08
1587 1615 3.023119 ACAGTGGTCAATTTGAACTGCA 58.977 40.909 22.46 1.05 38.26 4.41
1588 1616 3.632189 GACAGTGGTCAATTTGAACTGC 58.368 45.455 22.46 15.12 43.73 4.40
1589 1617 3.849645 GCGACAGTGGTCAATTTGAACTG 60.850 47.826 21.53 21.53 44.54 3.16
1590 1618 2.290641 GCGACAGTGGTCAATTTGAACT 59.709 45.455 15.15 6.92 44.54 3.01
1591 1619 2.604614 GGCGACAGTGGTCAATTTGAAC 60.605 50.000 7.52 7.52 44.54 3.18
1592 1620 1.606668 GGCGACAGTGGTCAATTTGAA 59.393 47.619 0.00 0.00 44.54 2.69
1593 1621 1.234821 GGCGACAGTGGTCAATTTGA 58.765 50.000 0.00 0.00 44.54 2.69
1594 1622 0.950836 TGGCGACAGTGGTCAATTTG 59.049 50.000 0.00 0.00 44.54 2.32
1595 1623 3.412722 TGGCGACAGTGGTCAATTT 57.587 47.368 0.00 0.00 44.54 1.82
1606 1634 4.314440 GCTCCACCACTGGCGACA 62.314 66.667 0.00 0.00 37.49 4.35
1610 1638 4.729918 CCTGGCTCCACCACTGGC 62.730 72.222 0.00 0.00 46.36 4.85
1611 1639 2.067932 TTTCCTGGCTCCACCACTGG 62.068 60.000 0.00 0.00 46.36 4.00
1612 1640 0.038744 ATTTCCTGGCTCCACCACTG 59.961 55.000 0.00 0.00 46.36 3.66
1613 1641 0.779997 AATTTCCTGGCTCCACCACT 59.220 50.000 0.00 0.00 46.36 4.00
1614 1642 1.632589 AAATTTCCTGGCTCCACCAC 58.367 50.000 0.00 0.00 46.36 4.16
1616 1644 2.247358 TGAAAATTTCCTGGCTCCACC 58.753 47.619 3.00 0.00 39.84 4.61
1617 1645 4.248058 CAATGAAAATTTCCTGGCTCCAC 58.752 43.478 3.00 0.00 0.00 4.02
1618 1646 3.261390 CCAATGAAAATTTCCTGGCTCCA 59.739 43.478 9.94 0.00 0.00 3.86
1619 1647 3.369787 CCCAATGAAAATTTCCTGGCTCC 60.370 47.826 14.88 0.00 32.88 4.70
1620 1648 3.865446 CCCAATGAAAATTTCCTGGCTC 58.135 45.455 14.88 0.00 32.88 4.70
1621 1649 2.026915 GCCCAATGAAAATTTCCTGGCT 60.027 45.455 14.88 0.00 32.88 4.75
1622 1650 2.358957 GCCCAATGAAAATTTCCTGGC 58.641 47.619 14.88 11.66 32.88 4.85
1623 1651 2.028203 ACGCCCAATGAAAATTTCCTGG 60.028 45.455 13.86 13.86 33.60 4.45
1624 1652 3.317603 ACGCCCAATGAAAATTTCCTG 57.682 42.857 3.00 1.10 0.00 3.86
1625 1653 4.350368 AAACGCCCAATGAAAATTTCCT 57.650 36.364 3.00 0.00 0.00 3.36
1626 1654 4.991687 TGTAAACGCCCAATGAAAATTTCC 59.008 37.500 3.00 0.00 0.00 3.13
1627 1655 5.694458 AGTGTAAACGCCCAATGAAAATTTC 59.306 36.000 0.00 0.00 0.00 2.17
1628 1656 5.606505 AGTGTAAACGCCCAATGAAAATTT 58.393 33.333 0.00 0.00 0.00 1.82
1629 1657 5.208463 AGTGTAAACGCCCAATGAAAATT 57.792 34.783 0.00 0.00 0.00 1.82
1630 1658 4.864704 AGTGTAAACGCCCAATGAAAAT 57.135 36.364 0.00 0.00 0.00 1.82
1631 1659 4.657436 AAGTGTAAACGCCCAATGAAAA 57.343 36.364 0.00 0.00 0.00 2.29
1632 1660 5.067413 TGTTAAGTGTAAACGCCCAATGAAA 59.933 36.000 0.00 0.00 0.00 2.69
1633 1661 4.579340 TGTTAAGTGTAAACGCCCAATGAA 59.421 37.500 0.00 0.00 0.00 2.57
1634 1662 4.135306 TGTTAAGTGTAAACGCCCAATGA 58.865 39.130 0.00 0.00 0.00 2.57
1635 1663 4.491234 TGTTAAGTGTAAACGCCCAATG 57.509 40.909 0.00 0.00 0.00 2.82
1636 1664 4.581409 AGTTGTTAAGTGTAAACGCCCAAT 59.419 37.500 0.00 0.00 0.00 3.16
1637 1665 3.946558 AGTTGTTAAGTGTAAACGCCCAA 59.053 39.130 0.00 0.00 0.00 4.12
1638 1666 3.543665 AGTTGTTAAGTGTAAACGCCCA 58.456 40.909 0.00 0.00 0.00 5.36
1639 1667 4.274214 AGAAGTTGTTAAGTGTAAACGCCC 59.726 41.667 0.00 0.00 0.00 6.13
1640 1668 5.413969 AGAAGTTGTTAAGTGTAAACGCC 57.586 39.130 0.00 0.00 0.00 5.68
1641 1669 6.712549 AGAAGAAGTTGTTAAGTGTAAACGC 58.287 36.000 0.00 0.00 0.00 4.84
1642 1670 9.550811 AAAAGAAGAAGTTGTTAAGTGTAAACG 57.449 29.630 0.00 0.00 0.00 3.60
1654 1682 9.860898 GCCATTGATATTAAAAGAAGAAGTTGT 57.139 29.630 0.00 0.00 0.00 3.32
1655 1683 9.859427 TGCCATTGATATTAAAAGAAGAAGTTG 57.141 29.630 0.00 0.00 0.00 3.16
1668 1696 9.585369 TCTGGACAAATATTGCCATTGATATTA 57.415 29.630 5.67 0.00 36.65 0.98
1669 1697 8.481492 TCTGGACAAATATTGCCATTGATATT 57.519 30.769 5.67 0.00 36.65 1.28
1670 1698 7.177921 CCTCTGGACAAATATTGCCATTGATAT 59.822 37.037 5.67 0.00 36.65 1.63
1671 1699 6.491062 CCTCTGGACAAATATTGCCATTGATA 59.509 38.462 5.67 0.00 36.65 2.15
1672 1700 5.303589 CCTCTGGACAAATATTGCCATTGAT 59.696 40.000 5.67 0.00 36.65 2.57
1673 1701 4.646040 CCTCTGGACAAATATTGCCATTGA 59.354 41.667 5.67 1.73 36.65 2.57
1674 1702 4.738541 GCCTCTGGACAAATATTGCCATTG 60.739 45.833 5.67 0.00 36.65 2.82
1675 1703 3.385755 GCCTCTGGACAAATATTGCCATT 59.614 43.478 5.67 0.00 36.65 3.16
1676 1704 2.961062 GCCTCTGGACAAATATTGCCAT 59.039 45.455 5.67 0.00 36.65 4.40
1677 1705 2.291475 TGCCTCTGGACAAATATTGCCA 60.291 45.455 5.24 5.24 36.14 4.92
1678 1706 2.099756 GTGCCTCTGGACAAATATTGCC 59.900 50.000 0.00 0.00 0.00 4.52
1679 1707 3.019564 AGTGCCTCTGGACAAATATTGC 58.980 45.455 0.00 0.00 0.00 3.56
1680 1708 9.896645 ATATATAGTGCCTCTGGACAAATATTG 57.103 33.333 0.00 0.00 0.00 1.90
1681 1709 9.896645 CATATATAGTGCCTCTGGACAAATATT 57.103 33.333 0.00 0.00 0.00 1.28
1682 1710 7.989741 GCATATATAGTGCCTCTGGACAAATAT 59.010 37.037 2.30 0.00 36.61 1.28
1683 1711 7.180946 AGCATATATAGTGCCTCTGGACAAATA 59.819 37.037 8.75 0.00 43.50 1.40
1684 1712 6.013032 AGCATATATAGTGCCTCTGGACAAAT 60.013 38.462 8.75 0.00 43.50 2.32
1685 1713 5.307976 AGCATATATAGTGCCTCTGGACAAA 59.692 40.000 8.75 0.00 43.50 2.83
1686 1714 4.840680 AGCATATATAGTGCCTCTGGACAA 59.159 41.667 8.75 0.00 43.50 3.18
1687 1715 4.420206 AGCATATATAGTGCCTCTGGACA 58.580 43.478 8.75 0.00 43.50 4.02
1688 1716 5.413309 AAGCATATATAGTGCCTCTGGAC 57.587 43.478 8.75 0.00 43.50 4.02
1689 1717 6.954102 TCTTAAGCATATATAGTGCCTCTGGA 59.046 38.462 8.75 1.35 43.50 3.86
1690 1718 7.175347 TCTTAAGCATATATAGTGCCTCTGG 57.825 40.000 8.75 0.00 43.50 3.86
1691 1719 9.149225 CTTTCTTAAGCATATATAGTGCCTCTG 57.851 37.037 8.75 0.00 43.50 3.35
1706 1734 6.830324 ATGATAACATGAGGCTTTCTTAAGCA 59.170 34.615 11.51 0.00 45.22 3.91
1707 1735 7.269477 ATGATAACATGAGGCTTTCTTAAGC 57.731 36.000 0.00 1.35 44.07 3.09
1709 1737 9.905713 ACTTATGATAACATGAGGCTTTCTTAA 57.094 29.630 0.00 0.00 42.13 1.85
1710 1738 9.905713 AACTTATGATAACATGAGGCTTTCTTA 57.094 29.630 0.00 0.00 42.13 2.10
1711 1739 8.814038 AACTTATGATAACATGAGGCTTTCTT 57.186 30.769 0.00 0.00 42.13 2.52
1712 1740 8.049117 TGAACTTATGATAACATGAGGCTTTCT 58.951 33.333 0.00 0.00 42.13 2.52
1713 1741 8.213518 TGAACTTATGATAACATGAGGCTTTC 57.786 34.615 0.00 5.19 42.13 2.62
1714 1742 7.831193 ACTGAACTTATGATAACATGAGGCTTT 59.169 33.333 0.00 0.00 42.13 3.51
1715 1743 7.341805 ACTGAACTTATGATAACATGAGGCTT 58.658 34.615 0.00 0.00 42.13 4.35
1716 1744 6.893583 ACTGAACTTATGATAACATGAGGCT 58.106 36.000 0.00 0.00 42.13 4.58
1717 1745 8.144478 TCTACTGAACTTATGATAACATGAGGC 58.856 37.037 0.00 2.53 42.13 4.70
1781 1809 1.338674 GCACCCCCAACAAATTTAGGC 60.339 52.381 0.00 0.00 0.00 3.93
1874 1902 1.421268 TCAGTGAGTTCATGCAAGGGT 59.579 47.619 0.00 0.00 0.00 4.34
1875 1903 2.082231 CTCAGTGAGTTCATGCAAGGG 58.918 52.381 12.28 0.00 0.00 3.95
1906 1934 9.931500 TAGTAAGCACTAGCAACCAATGCCTAC 62.931 44.444 0.00 0.00 45.26 3.18
1929 1957 2.119832 AGGACGGTGGCAGGTAGT 59.880 61.111 0.00 0.00 0.00 2.73
2029 2058 0.387239 GCACATTCACGGTTTCCAGC 60.387 55.000 0.00 0.00 0.00 4.85
2033 2062 1.925946 GCAGTGCACATTCACGGTTTC 60.926 52.381 21.04 0.00 41.61 2.78
2085 2114 1.849976 GCAAGCTGAGCAGGTGACAC 61.850 60.000 7.39 0.00 39.39 3.67
2089 2118 1.584380 GGAAGCAAGCTGAGCAGGTG 61.584 60.000 7.39 2.58 39.39 4.00
2090 2119 1.303155 GGAAGCAAGCTGAGCAGGT 60.303 57.895 7.39 0.80 41.53 4.00
2106 2135 2.281970 CACAGCAGGCAAGCAGGA 60.282 61.111 4.78 0.00 36.85 3.86
2112 2141 2.595463 GGCAGTCACAGCAGGCAA 60.595 61.111 0.00 0.00 0.00 4.52
2186 2219 1.022735 CATTCTCACCTGATGCCTGC 58.977 55.000 0.00 0.00 0.00 4.85
2221 2254 3.441500 GGACCTTCCCATGTTTCTCTT 57.558 47.619 0.00 0.00 0.00 2.85
2256 2289 3.053842 ACAGAGGTGATCAAGCCATCAAT 60.054 43.478 0.00 0.00 34.50 2.57
2305 2338 0.107508 CCCAGGACCTGCTACATGTG 60.108 60.000 16.72 0.00 0.00 3.21
2351 2384 4.935808 CCTACATAAAGCAAAACTCGGTCT 59.064 41.667 0.00 0.00 0.00 3.85
2398 2431 2.674796 AACATCCAGAGTAGTTCGGC 57.325 50.000 0.00 0.00 0.00 5.54
2418 2451 0.319083 CAGCCAGCTCATTTGCCAAA 59.681 50.000 0.00 0.00 0.00 3.28
2435 2468 1.135257 GGTCTCACGAGTCATGACCAG 60.135 57.143 22.21 17.82 44.59 4.00
2448 2481 3.375299 GCAGGTATTCATGTTGGTCTCAC 59.625 47.826 0.00 0.00 0.00 3.51
2541 2574 4.725790 AAGCCAACAAGATAAATCCAGC 57.274 40.909 0.00 0.00 0.00 4.85
2584 2617 3.848726 CAAAACTAGGAATTGCGCCAAT 58.151 40.909 4.18 1.64 35.39 3.16
2613 2646 7.062333 TGCACTTAGGCGATATAGGCACTAG 62.062 48.000 11.85 7.73 39.99 2.57
2653 2686 0.528017 TCAGCAGAACACCTAGCTCG 59.472 55.000 0.00 0.00 34.61 5.03
2683 2716 2.916702 TCACACTAGGCATGCCTATG 57.083 50.000 39.76 35.41 46.46 2.23
2716 2749 2.340427 TGCTGGGCAAAAGCAGTAC 58.660 52.632 4.84 0.00 45.50 2.73
2734 2767 0.811281 GCGCTTTTGAATGCCTAGGT 59.189 50.000 11.31 0.00 0.00 3.08
2738 2771 0.604578 ATGTGCGCTTTTGAATGCCT 59.395 45.000 9.73 0.00 0.00 4.75
2744 2777 1.086696 GCCTAGATGTGCGCTTTTGA 58.913 50.000 9.73 0.00 0.00 2.69
2746 2779 1.470098 CAAGCCTAGATGTGCGCTTTT 59.530 47.619 9.73 0.00 39.48 2.27
2747 2780 1.089920 CAAGCCTAGATGTGCGCTTT 58.910 50.000 9.73 0.00 39.48 3.51
2795 2828 9.330063 CATATCTGAAGTAAATGCTGGACTTTA 57.670 33.333 0.00 0.00 33.61 1.85
2830 2863 5.609423 AGCATGCTGATAAGAAAGGTCTAG 58.391 41.667 21.98 0.00 32.16 2.43
2868 2909 8.701895 ACCAAATGATAATCTCCGTAGAAAGTA 58.298 33.333 0.00 0.00 34.73 2.24
2869 2910 7.565680 ACCAAATGATAATCTCCGTAGAAAGT 58.434 34.615 0.00 0.00 34.73 2.66
3002 3046 2.074576 GAACTAACTCGCCCAGAAACC 58.925 52.381 0.00 0.00 0.00 3.27
3044 3088 5.818678 TTACACCTCTCATACCACTTTGT 57.181 39.130 0.00 0.00 0.00 2.83
3280 3324 6.625362 TGTATTGACAGAGCAACAACAAAAA 58.375 32.000 0.00 0.00 29.34 1.94
3285 3329 4.161333 GCATGTATTGACAGAGCAACAAC 58.839 43.478 0.00 0.00 39.50 3.32
3410 3454 5.031495 AGGTAGTCTAGACTCCAGAGTACA 58.969 45.833 28.42 5.38 45.07 2.90
3411 3455 5.619132 AGGTAGTCTAGACTCCAGAGTAC 57.381 47.826 28.42 18.10 43.62 2.73
3425 3469 5.477637 GGTCTACAAACAGAGAAGGTAGTCT 59.522 44.000 0.00 0.00 34.51 3.24
3484 3528 5.712446 TCACCTATAGCACTATCTTAGCAGG 59.288 44.000 0.00 0.00 0.00 4.85
3608 3652 6.204108 ACAGTTTCGTTTTATCCGTGAAGAAT 59.796 34.615 0.00 0.00 0.00 2.40
3669 3817 1.134007 TGAGCCATCCAAGCACATAGG 60.134 52.381 0.00 0.00 0.00 2.57
3726 3875 1.352083 AGTGGGTACTGAGTGCATGT 58.648 50.000 2.55 0.00 35.34 3.21
3738 3887 4.225717 AGGATTTAACGGCTAAAGTGGGTA 59.774 41.667 0.00 0.00 32.98 3.69
3757 3906 7.062957 ACATTAACAATGCCTAAGCTAAGGAT 58.937 34.615 0.00 0.00 42.69 3.24
3973 4123 7.323420 TCCTGGCGATGAATTATATGTTAGAG 58.677 38.462 0.00 0.00 0.00 2.43
4021 4171 1.868997 CAGAACGAGCGCCAACAAT 59.131 52.632 2.29 0.00 0.00 2.71
4092 4242 3.566523 CAGAGTTCCACGTACAAGAGTC 58.433 50.000 0.00 0.00 0.00 3.36
4095 4245 2.589720 TCCAGAGTTCCACGTACAAGA 58.410 47.619 0.00 0.00 0.00 3.02
4113 4263 7.939784 AACCTTCAGTCCTTGTAAATAATCC 57.060 36.000 0.00 0.00 0.00 3.01
4338 4488 6.038936 TGCAGAACAAAAGTAAGGGACTAAAC 59.961 38.462 0.00 0.00 38.49 2.01
4366 4517 2.158769 TGGCCTGGTCATACAGCATAAG 60.159 50.000 3.32 0.00 37.16 1.73
4717 4870 3.621558 CAAGGAACCTCCCCTGTTAATC 58.378 50.000 0.00 0.00 37.19 1.75
4719 4872 1.708551 CCAAGGAACCTCCCCTGTTAA 59.291 52.381 0.00 0.00 37.19 2.01
4720 4873 1.132332 TCCAAGGAACCTCCCCTGTTA 60.132 52.381 0.00 0.00 37.19 2.41
4723 4876 0.777446 TTTCCAAGGAACCTCCCCTG 59.223 55.000 0.00 0.00 37.19 4.45
4724 4877 1.076438 CTTTCCAAGGAACCTCCCCT 58.924 55.000 0.00 0.00 37.19 4.79
4735 4888 4.756084 AAGAACGAGATTGCTTTCCAAG 57.244 40.909 0.00 0.00 36.76 3.61
4748 4901 7.484641 TGAACAATTGAACAGAAAAAGAACGAG 59.515 33.333 13.59 0.00 0.00 4.18
4755 4908 5.396213 CCCCCTGAACAATTGAACAGAAAAA 60.396 40.000 25.59 2.10 32.90 1.94
4768 4921 3.075882 AGATGAATGAACCCCCTGAACAA 59.924 43.478 0.00 0.00 0.00 2.83
4815 4968 4.523083 TCGGTGATCAAGATAAAAAGGGG 58.477 43.478 0.00 0.00 0.00 4.79
4872 5025 7.308450 AGAGAAATATATTAGCTGCAGGTGA 57.692 36.000 28.10 20.88 0.00 4.02
4922 5076 2.556622 TCACATACAGCGTCTTCAGTCA 59.443 45.455 0.00 0.00 0.00 3.41
4923 5077 3.217599 TCACATACAGCGTCTTCAGTC 57.782 47.619 0.00 0.00 0.00 3.51
4933 5089 7.485913 CCATGAGTAAAACATTTCACATACAGC 59.514 37.037 0.00 0.00 0.00 4.40
4969 5125 8.726988 GCTAATTTGTGGTACTGACTGAAAATA 58.273 33.333 0.00 0.00 0.00 1.40
5237 5393 1.028330 CGTCTGATGTGCCATTGCCT 61.028 55.000 0.00 0.00 36.33 4.75
5401 5557 7.718272 ATCCACAATGAAAATGTCAAACAAG 57.282 32.000 0.00 0.00 40.50 3.16
5403 5559 9.421806 GATTATCCACAATGAAAATGTCAAACA 57.578 29.630 0.00 0.00 40.50 2.83
5404 5560 8.872845 GGATTATCCACAATGAAAATGTCAAAC 58.127 33.333 6.34 0.00 36.72 2.93
5453 5609 8.188139 ACCAAAATGAAACAGTAAACAGTACAG 58.812 33.333 0.00 0.00 0.00 2.74
5494 5650 0.835971 TGCCTCTAGCCAACTGGTCA 60.836 55.000 0.00 0.00 42.71 4.02
5581 5742 3.450817 CCTGTGGCTTTTTAAATAGGGGG 59.549 47.826 7.63 0.00 0.00 5.40
5734 5913 7.456269 ACAACCCATGGTTTATTAAATTCCAGA 59.544 33.333 11.73 0.00 44.33 3.86
5816 5999 6.486253 TGATTCAGGAGAAAAACATCTTCG 57.514 37.500 0.00 0.00 37.29 3.79
5876 6059 7.334921 GCAACAATATAATACGGGCATAGGTAA 59.665 37.037 0.00 0.00 0.00 2.85
5900 6083 2.964464 ACTCATGAACATTTTGGTGGCA 59.036 40.909 0.00 0.00 0.00 4.92
5921 6104 4.141824 TGCATAATGGTCGGTTATGACTCA 60.142 41.667 9.38 0.00 40.37 3.41
6018 6201 3.406764 GAATGTTCTGACAGCTTGGTCT 58.593 45.455 5.85 0.00 39.58 3.85
6061 6244 2.437359 AGGCGCAGGATCTTGCAC 60.437 61.111 27.01 18.67 44.28 4.57
6106 6289 6.263168 CAGAACTTGAAGTATCAGGTGGTTTT 59.737 38.462 0.00 0.00 44.30 2.43
6130 6313 4.657408 TGGCAGCCACGGCAATCA 62.657 61.111 11.22 2.10 44.88 2.57
6132 6315 4.666253 ACTGGCAGCCACGGCAAT 62.666 61.111 11.22 0.00 44.88 3.56
6148 6331 1.933853 GTTCCAGATATCGGCACACAC 59.066 52.381 9.98 0.00 0.00 3.82
6149 6332 1.470805 CGTTCCAGATATCGGCACACA 60.471 52.381 13.43 0.00 0.00 3.72
6208 6391 1.567504 ACCGTGAAGTTTCGACAGTG 58.432 50.000 0.00 0.00 0.00 3.66
6213 6396 1.202203 CGTCAACCGTGAAGTTTCGA 58.798 50.000 3.57 0.00 34.87 3.71
6335 6545 8.432013 TCGATCCACCAGTAAATACTACTACTA 58.568 37.037 0.00 0.00 34.13 1.82
6336 6546 7.285566 TCGATCCACCAGTAAATACTACTACT 58.714 38.462 0.00 0.00 34.13 2.57
6337 6547 7.502120 TCGATCCACCAGTAAATACTACTAC 57.498 40.000 0.00 0.00 34.13 2.73
6338 6548 8.573885 CAATCGATCCACCAGTAAATACTACTA 58.426 37.037 0.00 0.00 34.13 1.82
6339 6549 7.287005 TCAATCGATCCACCAGTAAATACTACT 59.713 37.037 0.00 0.00 34.13 2.57
6340 6550 7.431249 TCAATCGATCCACCAGTAAATACTAC 58.569 38.462 0.00 0.00 34.13 2.73
6341 6551 7.591421 TCAATCGATCCACCAGTAAATACTA 57.409 36.000 0.00 0.00 34.13 1.82
6360 6570 6.016777 AGCATTTCCGTTGGATAGAATCAATC 60.017 38.462 0.00 0.00 0.00 2.67
6432 6643 2.217750 CATCAAAACAGACGGTGTCCA 58.782 47.619 0.00 0.00 39.03 4.02
6441 6652 4.398988 AGCACACAAGAACATCAAAACAGA 59.601 37.500 0.00 0.00 0.00 3.41
6443 6654 4.671377 GAGCACACAAGAACATCAAAACA 58.329 39.130 0.00 0.00 0.00 2.83
6444 6655 3.725740 CGAGCACACAAGAACATCAAAAC 59.274 43.478 0.00 0.00 0.00 2.43
6466 6677 3.273919 AGACAAAATCAAACGAGCAGC 57.726 42.857 0.00 0.00 0.00 5.25
6514 6725 1.160137 GCTTGAGAAAGCACCGACAT 58.840 50.000 5.60 0.00 44.85 3.06
6602 6816 4.764308 GGATTTGCCCTAATCCTTCTCATC 59.236 45.833 12.31 0.00 46.62 2.92
6603 6817 4.734266 GGATTTGCCCTAATCCTTCTCAT 58.266 43.478 12.31 0.00 46.62 2.90
6632 6846 2.151202 CAGGAGAGATACTCGAGAGGC 58.849 57.143 21.68 7.24 45.76 4.70
6689 6904 5.737063 GCTGCTGGAGTTGAAGAAAATTCAA 60.737 40.000 0.00 0.00 36.21 2.69
6741 6956 5.890110 TGAACGCTCAATCTAATTCGATC 57.110 39.130 0.00 0.00 0.00 3.69
6775 6995 0.613260 CCTGTAAGCCTGTAGCCACA 59.387 55.000 0.00 0.00 45.47 4.17
6776 6996 0.744771 GCCTGTAAGCCTGTAGCCAC 60.745 60.000 0.00 0.00 45.47 5.01
6777 6997 0.909610 AGCCTGTAAGCCTGTAGCCA 60.910 55.000 0.00 0.00 45.47 4.75
6778 6998 0.253327 AAGCCTGTAAGCCTGTAGCC 59.747 55.000 0.00 0.00 45.47 3.93
6847 7067 5.011023 GGTATGGGCTTTGGATTAGGATTTG 59.989 44.000 0.00 0.00 0.00 2.32
6848 7068 5.147767 GGTATGGGCTTTGGATTAGGATTT 58.852 41.667 0.00 0.00 0.00 2.17
6893 7113 3.114643 TGTACCTCATGTCCTCATCCA 57.885 47.619 0.00 0.00 31.15 3.41
6894 7114 3.305676 CGATGTACCTCATGTCCTCATCC 60.306 52.174 0.00 0.00 36.83 3.51
6899 7119 1.063190 TCCCGATGTACCTCATGTCCT 60.063 52.381 0.00 0.00 36.83 3.85
6901 7121 3.753294 ATTCCCGATGTACCTCATGTC 57.247 47.619 0.00 0.00 36.83 3.06
6902 7122 3.006967 GCTATTCCCGATGTACCTCATGT 59.993 47.826 0.00 0.00 36.83 3.21
6903 7123 3.589988 GCTATTCCCGATGTACCTCATG 58.410 50.000 0.00 0.00 36.83 3.07
6927 7147 3.442273 CTGGGAGTCTTCACTCTACAGAC 59.558 52.174 15.94 0.00 46.45 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.