Multiple sequence alignment - TraesCS2A01G137600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G137600 chr2A 100.000 2417 0 0 1 2417 83440991 83438575 0.000000e+00 4464.0
1 TraesCS2A01G137600 chr2A 89.615 520 52 2 930 1448 83426626 83426108 0.000000e+00 660.0
2 TraesCS2A01G137600 chr2A 87.593 540 65 2 952 1490 83200626 83200088 2.040000e-175 625.0
3 TraesCS2A01G137600 chr2A 87.103 535 67 2 958 1491 83420209 83419676 2.660000e-169 604.0
4 TraesCS2A01G137600 chr2A 87.195 492 59 2 947 1434 83640030 83639539 7.550000e-155 556.0
5 TraesCS2A01G137600 chr2A 85.289 537 76 3 952 1487 83585233 83584699 3.510000e-153 551.0
6 TraesCS2A01G137600 chr2A 83.816 414 66 1 471 884 83420823 83420411 2.250000e-105 392.0
7 TraesCS2A01G137600 chr2A 84.211 399 63 0 471 869 83640627 83640229 2.910000e-104 388.0
8 TraesCS2A01G137600 chr2A 77.686 242 44 9 6 242 72913756 72913520 3.240000e-29 139.0
9 TraesCS2A01G137600 chr2A 88.172 93 10 1 2256 2347 653372017 653371925 2.540000e-20 110.0
10 TraesCS2A01G137600 chr2B 91.951 1553 88 10 566 2097 134555381 134553845 0.000000e+00 2141.0
11 TraesCS2A01G137600 chr2B 87.917 480 57 1 942 1420 134510980 134510501 4.510000e-157 564.0
12 TraesCS2A01G137600 chr2B 86.381 514 65 3 956 1464 134600939 134600426 7.550000e-155 556.0
13 TraesCS2A01G137600 chr2B 85.086 409 56 3 470 877 134549033 134548629 1.730000e-111 412.0
14 TraesCS2A01G137600 chr2B 75.000 468 102 8 3 467 489024335 489024790 4.070000e-48 202.0
15 TraesCS2A01G137600 chr2B 94.393 107 5 1 470 575 134568419 134568313 1.920000e-36 163.0
16 TraesCS2A01G137600 chr2B 88.732 71 8 0 1739 1809 134547750 134547680 1.190000e-13 87.9
17 TraesCS2A01G137600 chr3A 87.924 472 56 1 1 471 118622436 118621965 2.710000e-154 555.0
18 TraesCS2A01G137600 chr3A 75.599 459 81 19 4 452 306923174 306923611 5.270000e-47 198.0
19 TraesCS2A01G137600 chr3A 73.389 481 110 17 1 471 712676515 712676987 1.920000e-36 163.0
20 TraesCS2A01G137600 chr3A 89.773 88 9 0 2269 2356 215966968 215966881 1.960000e-21 113.0
21 TraesCS2A01G137600 chr3A 92.105 76 6 0 2269 2344 661044371 661044296 9.140000e-20 108.0
22 TraesCS2A01G137600 chr2D 86.187 514 66 3 956 1464 82891822 82891309 3.510000e-153 551.0
23 TraesCS2A01G137600 chr2D 85.714 399 52 3 470 867 82646392 82645998 1.340000e-112 416.0
24 TraesCS2A01G137600 chr2D 80.128 468 88 5 6 471 181566723 181566259 6.400000e-91 344.0
25 TraesCS2A01G137600 chr2D 78.365 416 74 14 1 407 73833303 73833711 3.080000e-64 255.0
26 TraesCS2A01G137600 chr2D 76.421 475 98 10 1 467 535231326 535231794 6.670000e-61 244.0
27 TraesCS2A01G137600 chr5A 88.764 89 10 0 2258 2346 574936443 574936355 2.540000e-20 110.0
28 TraesCS2A01G137600 chr5A 90.244 82 7 1 2269 2350 280116646 280116566 3.290000e-19 106.0
29 TraesCS2A01G137600 chr5A 87.912 91 10 1 2260 2350 625027059 625027148 3.290000e-19 106.0
30 TraesCS2A01G137600 chr1B 88.636 88 10 0 2260 2347 582741286 582741373 9.140000e-20 108.0
31 TraesCS2A01G137600 chr7A 87.234 94 10 2 2257 2349 735734253 735734161 3.290000e-19 106.0
32 TraesCS2A01G137600 chr4A 90.244 82 7 1 2269 2350 512291495 512291415 3.290000e-19 106.0
33 TraesCS2A01G137600 chr5B 73.859 241 54 9 6 242 534189586 534189351 1.190000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G137600 chr2A 83438575 83440991 2416 True 4464.00 4464 100.0000 1 2417 1 chr2A.!!$R4 2416
1 TraesCS2A01G137600 chr2A 83426108 83426626 518 True 660.00 660 89.6150 930 1448 1 chr2A.!!$R3 518
2 TraesCS2A01G137600 chr2A 83200088 83200626 538 True 625.00 625 87.5930 952 1490 1 chr2A.!!$R2 538
3 TraesCS2A01G137600 chr2A 83584699 83585233 534 True 551.00 551 85.2890 952 1487 1 chr2A.!!$R5 535
4 TraesCS2A01G137600 chr2A 83419676 83420823 1147 True 498.00 604 85.4595 471 1491 2 chr2A.!!$R7 1020
5 TraesCS2A01G137600 chr2A 83639539 83640627 1088 True 472.00 556 85.7030 471 1434 2 chr2A.!!$R8 963
6 TraesCS2A01G137600 chr2B 134553845 134555381 1536 True 2141.00 2141 91.9510 566 2097 1 chr2B.!!$R2 1531
7 TraesCS2A01G137600 chr2B 134600426 134600939 513 True 556.00 556 86.3810 956 1464 1 chr2B.!!$R4 508
8 TraesCS2A01G137600 chr2B 134547680 134549033 1353 True 249.95 412 86.9090 470 1809 2 chr2B.!!$R5 1339
9 TraesCS2A01G137600 chr2D 82891309 82891822 513 True 551.00 551 86.1870 956 1464 1 chr2D.!!$R2 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 279 0.03467 AGTCATCCAAAGCCTCCTGC 60.035 55.0 0.0 0.0 41.71 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2409 0.037326 TACAGTGCTGCTACAGTGCC 60.037 55.0 12.51 0.0 43.47 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.379243 CCTGACCGTGGCGCTTCT 62.379 66.667 7.64 0.00 0.00 2.85
37 38 2.357517 CTGACCGTGGCGCTTCTT 60.358 61.111 7.64 0.00 0.00 2.52
38 39 2.357034 TGACCGTGGCGCTTCTTC 60.357 61.111 7.64 0.00 0.00 2.87
39 40 2.048127 GACCGTGGCGCTTCTTCT 60.048 61.111 7.64 0.00 0.00 2.85
40 41 1.668151 GACCGTGGCGCTTCTTCTT 60.668 57.895 7.64 0.00 0.00 2.52
41 42 1.627550 GACCGTGGCGCTTCTTCTTC 61.628 60.000 7.64 0.00 0.00 2.87
42 43 1.374758 CCGTGGCGCTTCTTCTTCT 60.375 57.895 7.64 0.00 0.00 2.85
43 44 0.951040 CCGTGGCGCTTCTTCTTCTT 60.951 55.000 7.64 0.00 0.00 2.52
44 45 0.164647 CGTGGCGCTTCTTCTTCTTG 59.835 55.000 7.64 0.00 0.00 3.02
45 46 0.519077 GTGGCGCTTCTTCTTCTTGG 59.481 55.000 7.64 0.00 0.00 3.61
46 47 1.237285 TGGCGCTTCTTCTTCTTGGC 61.237 55.000 7.64 0.00 0.00 4.52
47 48 1.237285 GGCGCTTCTTCTTCTTGGCA 61.237 55.000 7.64 0.00 0.00 4.92
48 49 0.167689 GCGCTTCTTCTTCTTGGCAG 59.832 55.000 0.00 0.00 0.00 4.85
49 50 0.801251 CGCTTCTTCTTCTTGGCAGG 59.199 55.000 0.00 0.00 0.00 4.85
50 51 1.172175 GCTTCTTCTTCTTGGCAGGG 58.828 55.000 0.00 0.00 0.00 4.45
51 52 1.172175 CTTCTTCTTCTTGGCAGGGC 58.828 55.000 0.00 0.00 0.00 5.19
121 122 4.838152 CGAGGACCCGGTGGCATG 62.838 72.222 0.00 0.00 33.59 4.06
122 123 4.489771 GAGGACCCGGTGGCATGG 62.490 72.222 0.00 0.00 33.59 3.66
134 135 4.605064 GCATGGGGTGGCACATAT 57.395 55.556 20.82 7.30 44.52 1.78
135 136 2.344535 GCATGGGGTGGCACATATC 58.655 57.895 20.82 1.05 44.52 1.63
136 137 0.178981 GCATGGGGTGGCACATATCT 60.179 55.000 20.82 0.00 44.52 1.98
137 138 1.901591 CATGGGGTGGCACATATCTC 58.098 55.000 20.82 1.88 44.52 2.75
138 139 1.422781 CATGGGGTGGCACATATCTCT 59.577 52.381 20.82 0.00 44.52 3.10
139 140 1.595311 TGGGGTGGCACATATCTCTT 58.405 50.000 20.82 0.00 44.52 2.85
140 141 1.490490 TGGGGTGGCACATATCTCTTC 59.510 52.381 20.82 0.00 44.52 2.87
141 142 1.541233 GGGGTGGCACATATCTCTTCG 60.541 57.143 20.82 0.00 44.52 3.79
142 143 1.221414 GGTGGCACATATCTCTTCGC 58.779 55.000 20.82 0.00 44.52 4.70
143 144 0.855349 GTGGCACATATCTCTTCGCG 59.145 55.000 13.86 0.00 44.52 5.87
144 145 0.249447 TGGCACATATCTCTTCGCGG 60.249 55.000 6.13 0.00 0.00 6.46
145 146 0.249489 GGCACATATCTCTTCGCGGT 60.249 55.000 6.13 0.00 0.00 5.68
146 147 0.855349 GCACATATCTCTTCGCGGTG 59.145 55.000 6.13 3.94 0.00 4.94
147 148 1.491670 CACATATCTCTTCGCGGTGG 58.508 55.000 6.13 0.00 0.00 4.61
148 149 0.389391 ACATATCTCTTCGCGGTGGG 59.611 55.000 6.13 0.00 0.00 4.61
149 150 0.673985 CATATCTCTTCGCGGTGGGA 59.326 55.000 6.13 5.13 0.00 4.37
150 151 0.962489 ATATCTCTTCGCGGTGGGAG 59.038 55.000 6.13 9.08 0.00 4.30
151 152 1.735376 TATCTCTTCGCGGTGGGAGC 61.735 60.000 6.13 0.00 0.00 4.70
152 153 3.764466 CTCTTCGCGGTGGGAGCT 61.764 66.667 6.13 0.00 0.00 4.09
153 154 3.997064 CTCTTCGCGGTGGGAGCTG 62.997 68.421 6.13 0.00 0.00 4.24
178 179 4.779733 GGTCTGGGAGCGAGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
179 180 3.462678 GTCTGGGAGCGAGGGGAC 61.463 72.222 0.00 0.00 0.00 4.46
244 245 2.908940 GGCAGGGGATGGCGATTG 60.909 66.667 0.00 0.00 45.54 2.67
245 246 3.599704 GCAGGGGATGGCGATTGC 61.600 66.667 0.00 0.00 41.71 3.56
262 263 4.615834 CCTCCTCGCGCGCTAGTC 62.616 72.222 30.48 0.00 0.00 2.59
263 264 3.877357 CTCCTCGCGCGCTAGTCA 61.877 66.667 30.48 14.79 0.00 3.41
264 265 3.187699 CTCCTCGCGCGCTAGTCAT 62.188 63.158 30.48 0.00 0.00 3.06
265 266 2.727647 CCTCGCGCGCTAGTCATC 60.728 66.667 30.48 0.00 0.00 2.92
266 267 2.727647 CTCGCGCGCTAGTCATCC 60.728 66.667 30.48 0.00 0.00 3.51
267 268 3.469754 CTCGCGCGCTAGTCATCCA 62.470 63.158 30.48 1.98 0.00 3.41
268 269 2.582226 CGCGCGCTAGTCATCCAA 60.582 61.111 30.48 0.00 0.00 3.53
269 270 2.164663 CGCGCGCTAGTCATCCAAA 61.165 57.895 30.48 0.00 0.00 3.28
270 271 1.638467 GCGCGCTAGTCATCCAAAG 59.362 57.895 26.67 0.00 0.00 2.77
271 272 1.638467 CGCGCTAGTCATCCAAAGC 59.362 57.895 5.56 0.00 0.00 3.51
272 273 1.766143 CGCGCTAGTCATCCAAAGCC 61.766 60.000 5.56 0.00 0.00 4.35
273 274 0.462759 GCGCTAGTCATCCAAAGCCT 60.463 55.000 0.00 0.00 0.00 4.58
274 275 1.576356 CGCTAGTCATCCAAAGCCTC 58.424 55.000 0.00 0.00 0.00 4.70
275 276 1.808133 CGCTAGTCATCCAAAGCCTCC 60.808 57.143 0.00 0.00 0.00 4.30
276 277 1.488393 GCTAGTCATCCAAAGCCTCCT 59.512 52.381 0.00 0.00 0.00 3.69
277 278 2.744494 GCTAGTCATCCAAAGCCTCCTG 60.744 54.545 0.00 0.00 0.00 3.86
278 279 0.034670 AGTCATCCAAAGCCTCCTGC 60.035 55.000 0.00 0.00 41.71 4.85
279 280 1.034292 GTCATCCAAAGCCTCCTGCC 61.034 60.000 0.00 0.00 42.71 4.85
280 281 1.755783 CATCCAAAGCCTCCTGCCC 60.756 63.158 0.00 0.00 42.71 5.36
281 282 2.240918 ATCCAAAGCCTCCTGCCCA 61.241 57.895 0.00 0.00 42.71 5.36
282 283 2.220786 ATCCAAAGCCTCCTGCCCAG 62.221 60.000 0.00 0.00 42.71 4.45
283 284 2.759114 CAAAGCCTCCTGCCCAGA 59.241 61.111 0.00 0.00 42.71 3.86
284 285 1.378250 CAAAGCCTCCTGCCCAGAG 60.378 63.158 0.00 0.00 42.71 3.35
285 286 2.610519 AAAGCCTCCTGCCCAGAGG 61.611 63.158 8.95 8.95 42.71 3.69
286 287 3.569361 AAGCCTCCTGCCCAGAGGA 62.569 63.158 15.85 4.32 42.71 3.71
293 294 4.804420 TGCCCAGAGGAGCGGGAT 62.804 66.667 0.00 0.00 46.34 3.85
294 295 3.934962 GCCCAGAGGAGCGGGATC 61.935 72.222 0.00 0.00 46.34 3.36
295 296 3.610669 CCCAGAGGAGCGGGATCG 61.611 72.222 0.00 0.00 46.34 3.69
296 297 3.610669 CCAGAGGAGCGGGATCGG 61.611 72.222 0.00 0.00 36.79 4.18
297 298 4.292178 CAGAGGAGCGGGATCGGC 62.292 72.222 0.00 0.00 36.79 5.54
307 308 3.703127 GGATCGGCCCCGGGTATC 61.703 72.222 21.85 15.74 40.25 2.24
308 309 4.065281 GATCGGCCCCGGGTATCG 62.065 72.222 21.85 19.38 40.25 2.92
333 334 3.983494 CCGGAGAGCGGCGATCAT 61.983 66.667 27.88 12.29 0.00 2.45
334 335 2.429907 CGGAGAGCGGCGATCATC 60.430 66.667 27.88 19.65 0.00 2.92
335 336 2.730733 GGAGAGCGGCGATCATCA 59.269 61.111 27.88 0.00 0.00 3.07
336 337 1.663074 GGAGAGCGGCGATCATCAC 60.663 63.158 27.88 14.38 0.00 3.06
337 338 2.013483 GAGAGCGGCGATCATCACG 61.013 63.158 27.88 0.00 0.00 4.35
338 339 3.032609 GAGCGGCGATCATCACGG 61.033 66.667 21.51 0.00 0.00 4.94
344 345 3.032609 CGATCATCACGGCGGCTC 61.033 66.667 13.24 0.00 0.00 4.70
345 346 2.419198 GATCATCACGGCGGCTCT 59.581 61.111 13.24 0.00 0.00 4.09
346 347 1.663074 GATCATCACGGCGGCTCTC 60.663 63.158 13.24 0.00 0.00 3.20
347 348 3.157217 ATCATCACGGCGGCTCTCC 62.157 63.158 13.24 0.00 0.00 3.71
348 349 4.899239 CATCACGGCGGCTCTCCC 62.899 72.222 13.24 0.00 0.00 4.30
380 381 4.377760 TCCCGCCGGAGTTCCTCT 62.378 66.667 5.05 0.00 32.86 3.69
381 382 3.391382 CCCGCCGGAGTTCCTCTT 61.391 66.667 5.05 0.00 0.00 2.85
382 383 2.184579 CCGCCGGAGTTCCTCTTC 59.815 66.667 5.05 0.00 0.00 2.87
383 384 2.646175 CCGCCGGAGTTCCTCTTCA 61.646 63.158 5.05 0.00 0.00 3.02
384 385 1.446272 CGCCGGAGTTCCTCTTCAC 60.446 63.158 5.05 0.00 0.00 3.18
385 386 1.446272 GCCGGAGTTCCTCTTCACG 60.446 63.158 5.05 0.00 0.00 4.35
386 387 1.874345 GCCGGAGTTCCTCTTCACGA 61.874 60.000 5.05 0.00 0.00 4.35
387 388 0.109226 CCGGAGTTCCTCTTCACGAC 60.109 60.000 0.00 0.00 0.00 4.34
388 389 0.454620 CGGAGTTCCTCTTCACGACG 60.455 60.000 0.00 0.00 0.00 5.12
389 390 0.733223 GGAGTTCCTCTTCACGACGC 60.733 60.000 0.00 0.00 0.00 5.19
390 391 0.039437 GAGTTCCTCTTCACGACGCA 60.039 55.000 0.00 0.00 0.00 5.24
391 392 0.039074 AGTTCCTCTTCACGACGCAG 60.039 55.000 0.00 0.00 0.00 5.18
392 393 1.009389 GTTCCTCTTCACGACGCAGG 61.009 60.000 0.00 0.00 0.00 4.85
393 394 2.125912 CCTCTTCACGACGCAGGG 60.126 66.667 0.00 0.00 0.00 4.45
394 395 2.811317 CTCTTCACGACGCAGGGC 60.811 66.667 0.00 0.00 0.00 5.19
405 406 4.785453 GCAGGGCGTCAGGGGAAG 62.785 72.222 0.00 0.00 0.00 3.46
406 407 4.101448 CAGGGCGTCAGGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
407 408 4.332543 AGGGCGTCAGGGGAAGGA 62.333 66.667 0.00 0.00 0.00 3.36
408 409 4.097361 GGGCGTCAGGGGAAGGAC 62.097 72.222 0.00 0.00 0.00 3.85
412 413 2.284405 GTCAGGGGAAGGACGGGA 60.284 66.667 0.00 0.00 0.00 5.14
413 414 2.038975 TCAGGGGAAGGACGGGAG 59.961 66.667 0.00 0.00 0.00 4.30
414 415 3.083997 CAGGGGAAGGACGGGAGG 61.084 72.222 0.00 0.00 0.00 4.30
467 468 4.176752 GAGGCCCCATCGTCCCAC 62.177 72.222 0.00 0.00 0.00 4.61
468 469 4.741239 AGGCCCCATCGTCCCACT 62.741 66.667 0.00 0.00 0.00 4.00
484 485 2.303022 CCCACTCAGCCAAGAACTTAGA 59.697 50.000 0.00 0.00 0.00 2.10
503 504 1.181741 AGAGCTCACGGCAGAACTCA 61.182 55.000 17.77 0.00 44.79 3.41
514 515 4.003648 CGGCAGAACTCATTAGAAACCTT 58.996 43.478 0.00 0.00 0.00 3.50
523 524 4.671831 TCATTAGAAACCTTGCCATGGAA 58.328 39.130 18.40 0.00 0.00 3.53
529 530 1.632589 ACCTTGCCATGGAAGGAAAC 58.367 50.000 32.56 11.77 42.44 2.78
539 540 4.098501 CCATGGAAGGAAACATAAAGGAGC 59.901 45.833 5.56 0.00 0.00 4.70
545 546 5.441718 AGGAAACATAAAGGAGCAGATCA 57.558 39.130 0.00 0.00 0.00 2.92
547 548 4.578105 GGAAACATAAAGGAGCAGATCAGG 59.422 45.833 0.00 0.00 0.00 3.86
604 605 3.052082 CTCAGCCAAGGTGCACCG 61.052 66.667 29.68 17.12 42.08 4.94
633 634 5.411831 ACAGATTCAGATCAGTTGCTACA 57.588 39.130 0.13 0.00 34.60 2.74
799 800 2.143122 CTGTTGCGGAGTATGTGTGTT 58.857 47.619 0.00 0.00 0.00 3.32
804 805 3.266636 TGCGGAGTATGTGTGTTTATGG 58.733 45.455 0.00 0.00 0.00 2.74
810 811 6.072948 CGGAGTATGTGTGTTTATGGTCAAAA 60.073 38.462 0.00 0.00 0.00 2.44
889 890 9.528489 AGCCCTTTCAAATTTAAACTAGTGATA 57.472 29.630 0.00 0.00 0.00 2.15
926 1106 7.548075 CAGATACTACCAGTTAACCAAAACGAT 59.452 37.037 0.88 0.00 34.46 3.73
974 1219 7.148306 ACCACTAAAGTTTAATCATGGCTTACG 60.148 37.037 11.87 0.00 0.00 3.18
1028 1277 4.079558 AGGAATAATGGATGCAGAAGGTGT 60.080 41.667 0.00 0.00 0.00 4.16
1061 1310 1.535462 CCTTGTTGGCCTTAGTTCACG 59.465 52.381 3.32 0.00 0.00 4.35
1063 1312 1.873698 TGTTGGCCTTAGTTCACGAC 58.126 50.000 3.32 0.00 0.00 4.34
1091 1340 3.507162 TGCCATTCCTGAAGACTTTGA 57.493 42.857 0.00 0.00 0.00 2.69
1112 1361 0.809241 CGAGAGCTTGAGCATGGTCC 60.809 60.000 21.58 6.97 45.16 4.46
1182 1431 0.890542 TGACACCCACTGCTCATTGC 60.891 55.000 0.00 0.00 43.25 3.56
1295 1544 1.661341 GAAGCACTGCTGATGGTAGG 58.339 55.000 3.73 0.00 39.62 3.18
1297 1546 0.911525 AGCACTGCTGATGGTAGGGT 60.912 55.000 1.67 0.00 37.57 4.34
1434 1683 5.048154 TGAGTAGCTATGAGACATCATCAGC 60.048 44.000 0.00 3.55 42.76 4.26
1462 1715 7.994911 TCACTTGAACATGCATTTAGGAGATAT 59.005 33.333 0.00 0.00 0.00 1.63
1483 1736 8.798402 AGATATTTGCACTACTGGTCTATACTC 58.202 37.037 0.00 0.00 0.00 2.59
1523 1776 7.908827 TTGTTTTTGCGAATGGTCTATACTA 57.091 32.000 0.00 0.00 0.00 1.82
1527 1780 5.449107 TTGCGAATGGTCTATACTAGGAC 57.551 43.478 0.00 0.00 0.00 3.85
1566 1819 8.874156 TCAATTTGCTCACCATAGTATAGAGAT 58.126 33.333 9.44 0.00 0.00 2.75
1567 1820 9.499479 CAATTTGCTCACCATAGTATAGAGATT 57.501 33.333 9.44 1.13 0.00 2.40
1572 1825 9.588096 TGCTCACCATAGTATAGAGATTAAAGA 57.412 33.333 9.44 0.00 0.00 2.52
1646 1899 9.630098 CAGTTGATATTAAGCAGTTGATTTGTT 57.370 29.630 0.00 0.00 0.00 2.83
1714 1967 9.691362 ACTTAAACAATGGCTGTATTAGTTTTG 57.309 29.630 0.00 0.00 37.23 2.44
1721 1974 9.341899 CAATGGCTGTATTAGTTTTGTAAGAAC 57.658 33.333 0.00 0.00 0.00 3.01
1733 1986 8.055279 AGTTTTGTAAGAACATGGATGTATGG 57.945 34.615 0.00 0.00 40.80 2.74
1747 2000 6.603224 TGGATGTATGGATGTTGATGAATCA 58.397 36.000 0.00 0.00 34.44 2.57
1759 2012 4.365899 TGATGAATCAGCTTTGTGATGC 57.634 40.909 0.00 0.00 37.24 3.91
1798 2051 0.318955 GTTGTGCATTGTCAGGGTGC 60.319 55.000 0.00 0.00 39.26 5.01
1799 2052 0.754587 TTGTGCATTGTCAGGGTGCA 60.755 50.000 0.00 5.76 45.69 4.57
1816 2069 4.391830 GGGTGCAAGGCTTAAATTTTAAGC 59.608 41.667 31.97 31.97 46.64 3.09
1828 2081 7.583860 TTAAATTTTAAGCATTACAACGGGC 57.416 32.000 0.00 0.00 0.00 6.13
1829 2082 3.579335 TTTTAAGCATTACAACGGGCC 57.421 42.857 0.00 0.00 0.00 5.80
1830 2083 1.088306 TTAAGCATTACAACGGGCCG 58.912 50.000 27.06 27.06 0.00 6.13
1831 2084 0.745128 TAAGCATTACAACGGGCCGG 60.745 55.000 31.78 16.15 0.00 6.13
1832 2085 3.514362 GCATTACAACGGGCCGGG 61.514 66.667 31.78 23.64 0.00 5.73
1875 2128 7.038587 AGTGAATGGTGTGGTTATCAAGTACTA 60.039 37.037 0.00 0.00 0.00 1.82
1877 2130 8.325787 TGAATGGTGTGGTTATCAAGTACTAAT 58.674 33.333 0.00 0.00 0.00 1.73
1884 2137 7.985184 TGTGGTTATCAAGTACTAATGACATCC 59.015 37.037 0.00 0.00 0.00 3.51
1954 2207 5.927819 TCCTTCAAAGAACCATGCAATTTT 58.072 33.333 0.00 0.00 0.00 1.82
1993 2247 6.264067 AGGAGCCTAGCATAAATGATTTGAAC 59.736 38.462 0.00 0.00 0.00 3.18
2021 2275 8.029522 AGGAGCGACAACATATATAGTAACATG 58.970 37.037 0.00 0.00 0.00 3.21
2042 2296 8.943594 ACATGGTAAAAATTAGGGTTTACTCA 57.056 30.769 0.00 7.05 39.25 3.41
2043 2297 9.369672 ACATGGTAAAAATTAGGGTTTACTCAA 57.630 29.630 0.00 0.12 39.25 3.02
2057 2311 6.628919 GTTTACTCAACCACCACAAATACT 57.371 37.500 0.00 0.00 0.00 2.12
2062 2316 5.299279 ACTCAACCACCACAAATACTGAAAG 59.701 40.000 0.00 0.00 42.29 2.62
2097 2354 5.714333 TCACAATTGGTACCATGCATTTAGT 59.286 36.000 17.17 5.31 0.00 2.24
2098 2355 6.887002 TCACAATTGGTACCATGCATTTAGTA 59.113 34.615 17.17 0.00 0.00 1.82
2099 2356 7.559533 TCACAATTGGTACCATGCATTTAGTAT 59.440 33.333 17.17 0.00 0.00 2.12
2100 2357 8.845227 CACAATTGGTACCATGCATTTAGTATA 58.155 33.333 17.17 0.00 0.00 1.47
2101 2358 8.846211 ACAATTGGTACCATGCATTTAGTATAC 58.154 33.333 17.17 0.00 0.00 1.47
2102 2359 9.066892 CAATTGGTACCATGCATTTAGTATACT 57.933 33.333 17.17 10.87 0.00 2.12
2103 2360 9.640952 AATTGGTACCATGCATTTAGTATACTT 57.359 29.630 17.17 0.00 0.00 2.24
2106 2363 9.550406 TGGTACCATGCATTTAGTATACTTAAC 57.450 33.333 11.60 0.00 0.00 2.01
2107 2364 9.550406 GGTACCATGCATTTAGTATACTTAACA 57.450 33.333 11.40 4.22 0.00 2.41
2110 2367 9.109393 ACCATGCATTTAGTATACTTAACACTG 57.891 33.333 11.40 5.17 0.00 3.66
2111 2368 8.070171 CCATGCATTTAGTATACTTAACACTGC 58.930 37.037 11.40 14.58 0.00 4.40
2112 2369 7.548196 TGCATTTAGTATACTTAACACTGCC 57.452 36.000 18.72 7.89 0.00 4.85
2113 2370 7.335627 TGCATTTAGTATACTTAACACTGCCT 58.664 34.615 18.72 0.00 0.00 4.75
2114 2371 7.827236 TGCATTTAGTATACTTAACACTGCCTT 59.173 33.333 18.72 0.00 0.00 4.35
2115 2372 8.674607 GCATTTAGTATACTTAACACTGCCTTT 58.325 33.333 11.40 0.00 0.00 3.11
2116 2373 9.988350 CATTTAGTATACTTAACACTGCCTTTG 57.012 33.333 11.40 0.00 0.00 2.77
2117 2374 7.605410 TTAGTATACTTAACACTGCCTTTGC 57.395 36.000 11.40 0.00 38.26 3.68
2118 2375 4.630069 AGTATACTTAACACTGCCTTTGCG 59.370 41.667 0.00 0.00 41.78 4.85
2119 2376 1.675552 ACTTAACACTGCCTTTGCGT 58.324 45.000 0.00 0.00 41.78 5.24
2120 2377 1.602377 ACTTAACACTGCCTTTGCGTC 59.398 47.619 0.00 0.00 41.78 5.19
2121 2378 1.873591 CTTAACACTGCCTTTGCGTCT 59.126 47.619 0.00 0.00 41.78 4.18
2122 2379 2.823924 TAACACTGCCTTTGCGTCTA 57.176 45.000 0.00 0.00 41.78 2.59
2123 2380 1.226746 AACACTGCCTTTGCGTCTAC 58.773 50.000 0.00 0.00 41.78 2.59
2124 2381 0.393077 ACACTGCCTTTGCGTCTACT 59.607 50.000 0.00 0.00 41.78 2.57
2125 2382 1.202651 ACACTGCCTTTGCGTCTACTT 60.203 47.619 0.00 0.00 41.78 2.24
2126 2383 2.036733 ACACTGCCTTTGCGTCTACTTA 59.963 45.455 0.00 0.00 41.78 2.24
2127 2384 3.064207 CACTGCCTTTGCGTCTACTTAA 58.936 45.455 0.00 0.00 41.78 1.85
2128 2385 3.064931 ACTGCCTTTGCGTCTACTTAAC 58.935 45.455 0.00 0.00 41.78 2.01
2129 2386 3.064207 CTGCCTTTGCGTCTACTTAACA 58.936 45.455 0.00 0.00 41.78 2.41
2130 2387 2.803956 TGCCTTTGCGTCTACTTAACAC 59.196 45.455 0.00 0.00 41.78 3.32
2131 2388 3.064931 GCCTTTGCGTCTACTTAACACT 58.935 45.455 0.00 0.00 0.00 3.55
2132 2389 3.120649 GCCTTTGCGTCTACTTAACACTG 60.121 47.826 0.00 0.00 0.00 3.66
2133 2390 3.120649 CCTTTGCGTCTACTTAACACTGC 60.121 47.826 0.00 0.00 0.00 4.40
2134 2391 2.074547 TGCGTCTACTTAACACTGCC 57.925 50.000 0.00 0.00 0.00 4.85
2135 2392 1.616865 TGCGTCTACTTAACACTGCCT 59.383 47.619 0.00 0.00 0.00 4.75
2136 2393 2.036733 TGCGTCTACTTAACACTGCCTT 59.963 45.455 0.00 0.00 0.00 4.35
2137 2394 3.064931 GCGTCTACTTAACACTGCCTTT 58.935 45.455 0.00 0.00 0.00 3.11
2138 2395 4.240096 GCGTCTACTTAACACTGCCTTTA 58.760 43.478 0.00 0.00 0.00 1.85
2139 2396 4.326548 GCGTCTACTTAACACTGCCTTTAG 59.673 45.833 0.00 0.00 0.00 1.85
2140 2397 5.467705 CGTCTACTTAACACTGCCTTTAGT 58.532 41.667 0.00 0.00 0.00 2.24
2141 2398 6.615088 CGTCTACTTAACACTGCCTTTAGTA 58.385 40.000 0.00 0.00 0.00 1.82
2142 2399 7.256286 CGTCTACTTAACACTGCCTTTAGTAT 58.744 38.462 0.00 0.00 0.00 2.12
2143 2400 8.400947 CGTCTACTTAACACTGCCTTTAGTATA 58.599 37.037 0.00 0.00 0.00 1.47
2152 2409 8.668510 ACACTGCCTTTAGTATATCATTTCAG 57.331 34.615 0.00 0.00 0.00 3.02
2153 2410 7.716998 ACACTGCCTTTAGTATATCATTTCAGG 59.283 37.037 0.00 0.00 0.00 3.86
2154 2411 6.712547 ACTGCCTTTAGTATATCATTTCAGGC 59.287 38.462 0.00 0.00 43.92 4.85
2156 2413 6.903419 GCCTTTAGTATATCATTTCAGGCAC 58.097 40.000 0.00 0.00 43.26 5.01
2157 2414 6.712547 GCCTTTAGTATATCATTTCAGGCACT 59.287 38.462 0.00 0.00 43.26 4.40
2168 2425 3.476386 AGGCACTGTAGCAGCACT 58.524 55.556 0.00 0.00 37.18 4.40
2169 2426 1.004080 AGGCACTGTAGCAGCACTG 60.004 57.895 0.00 0.00 37.18 3.66
2170 2427 1.302033 GGCACTGTAGCAGCACTGT 60.302 57.895 0.00 0.00 34.37 3.55
2171 2428 0.037326 GGCACTGTAGCAGCACTGTA 60.037 55.000 0.00 0.00 34.37 2.74
2172 2429 1.354040 GCACTGTAGCAGCACTGTAG 58.646 55.000 0.00 0.00 34.37 2.74
2173 2430 2.001812 CACTGTAGCAGCACTGTAGG 57.998 55.000 0.00 0.00 34.37 3.18
2174 2431 0.898320 ACTGTAGCAGCACTGTAGGG 59.102 55.000 0.00 0.00 34.37 3.53
2175 2432 0.460987 CTGTAGCAGCACTGTAGGGC 60.461 60.000 0.00 0.00 0.00 5.19
2176 2433 1.191489 TGTAGCAGCACTGTAGGGCA 61.191 55.000 9.05 0.00 0.00 5.36
2177 2434 0.741221 GTAGCAGCACTGTAGGGCAC 60.741 60.000 9.05 0.00 0.00 5.01
2178 2435 1.191489 TAGCAGCACTGTAGGGCACA 61.191 55.000 9.05 0.00 35.30 4.57
2190 2447 3.467226 GGCACAGTAGCCGGCCTA 61.467 66.667 26.15 12.36 46.12 3.93
2191 2448 2.107141 GCACAGTAGCCGGCCTAG 59.893 66.667 26.15 13.75 0.00 3.02
2192 2449 2.815308 CACAGTAGCCGGCCTAGG 59.185 66.667 26.15 13.79 0.00 3.02
2210 2467 4.060667 CCCGGGGCTTGGTCCAAT 62.061 66.667 14.71 0.00 0.00 3.16
2211 2468 2.440247 CCGGGGCTTGGTCCAATC 60.440 66.667 4.34 0.00 0.00 2.67
2212 2469 2.677228 CGGGGCTTGGTCCAATCT 59.323 61.111 4.34 0.00 0.00 2.40
2213 2470 1.000896 CGGGGCTTGGTCCAATCTT 60.001 57.895 4.34 0.00 0.00 2.40
2214 2471 1.315257 CGGGGCTTGGTCCAATCTTG 61.315 60.000 4.34 0.00 0.00 3.02
2232 2489 4.251246 GGTCCGCCCATGCATTTA 57.749 55.556 0.00 0.00 37.32 1.40
2233 2490 2.032981 GGTCCGCCCATGCATTTAG 58.967 57.895 0.00 0.00 37.32 1.85
2234 2491 1.455383 GGTCCGCCCATGCATTTAGG 61.455 60.000 0.00 0.00 37.32 2.69
2235 2492 0.751643 GTCCGCCCATGCATTTAGGT 60.752 55.000 0.00 0.00 37.32 3.08
2236 2493 0.840617 TCCGCCCATGCATTTAGGTA 59.159 50.000 0.00 0.00 37.32 3.08
2237 2494 1.213182 TCCGCCCATGCATTTAGGTAA 59.787 47.619 0.00 0.00 37.32 2.85
2238 2495 2.028130 CCGCCCATGCATTTAGGTAAA 58.972 47.619 0.00 0.00 37.32 2.01
2239 2496 2.428890 CCGCCCATGCATTTAGGTAAAA 59.571 45.455 0.00 0.00 37.32 1.52
2240 2497 3.118956 CCGCCCATGCATTTAGGTAAAAA 60.119 43.478 0.00 0.00 37.32 1.94
2266 2523 9.503399 AAATCCTAATCGTTTGAACTACTTTCT 57.497 29.630 0.00 0.00 34.97 2.52
2269 2526 9.582431 TCCTAATCGTTTGAACTACTTTCTATG 57.418 33.333 0.00 0.00 34.97 2.23
2270 2527 9.367444 CCTAATCGTTTGAACTACTTTCTATGT 57.633 33.333 0.00 0.00 34.97 2.29
2272 2529 7.829378 ATCGTTTGAACTACTTTCTATGTCC 57.171 36.000 0.00 0.00 34.97 4.02
2273 2530 6.161381 TCGTTTGAACTACTTTCTATGTCCC 58.839 40.000 0.00 0.00 34.97 4.46
2274 2531 5.929992 CGTTTGAACTACTTTCTATGTCCCA 59.070 40.000 0.00 0.00 34.97 4.37
2275 2532 6.090898 CGTTTGAACTACTTTCTATGTCCCAG 59.909 42.308 0.00 0.00 34.97 4.45
2276 2533 6.928348 TTGAACTACTTTCTATGTCCCAGA 57.072 37.500 0.00 0.00 34.97 3.86
2277 2534 6.928348 TGAACTACTTTCTATGTCCCAGAA 57.072 37.500 0.00 0.00 34.97 3.02
2278 2535 7.496346 TGAACTACTTTCTATGTCCCAGAAT 57.504 36.000 0.00 0.00 34.97 2.40
2279 2536 8.603898 TGAACTACTTTCTATGTCCCAGAATA 57.396 34.615 0.00 0.00 34.97 1.75
2280 2537 9.213777 TGAACTACTTTCTATGTCCCAGAATAT 57.786 33.333 0.00 0.00 34.97 1.28
2287 2544 9.197694 CTTTCTATGTCCCAGAATATAAGAACG 57.802 37.037 0.00 0.00 32.27 3.95
2288 2545 7.834881 TCTATGTCCCAGAATATAAGAACGT 57.165 36.000 0.00 0.00 0.00 3.99
2289 2546 8.246430 TCTATGTCCCAGAATATAAGAACGTT 57.754 34.615 0.00 0.00 0.00 3.99
2290 2547 8.701895 TCTATGTCCCAGAATATAAGAACGTTT 58.298 33.333 0.46 0.00 0.00 3.60
2291 2548 9.326413 CTATGTCCCAGAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
2292 2549 7.989416 TGTCCCAGAATATAAGAACGTTTTT 57.011 32.000 9.22 9.22 0.00 1.94
2293 2550 7.812648 TGTCCCAGAATATAAGAACGTTTTTG 58.187 34.615 13.87 0.00 0.00 2.44
2294 2551 7.662258 TGTCCCAGAATATAAGAACGTTTTTGA 59.338 33.333 13.87 2.81 0.00 2.69
2295 2552 8.674607 GTCCCAGAATATAAGAACGTTTTTGAT 58.325 33.333 13.87 4.93 0.00 2.57
2296 2553 9.893634 TCCCAGAATATAAGAACGTTTTTGATA 57.106 29.630 13.87 8.23 0.00 2.15
2297 2554 9.931210 CCCAGAATATAAGAACGTTTTTGATAC 57.069 33.333 13.87 2.84 0.00 2.24
2306 2563 8.773404 AAGAACGTTTTTGATACTATGCTAGT 57.227 30.769 0.46 2.19 42.68 2.57
2307 2564 8.186178 AGAACGTTTTTGATACTATGCTAGTG 57.814 34.615 0.46 0.00 39.81 2.74
2308 2565 7.817962 AGAACGTTTTTGATACTATGCTAGTGT 59.182 33.333 0.46 0.61 39.81 3.55
2309 2566 7.900782 ACGTTTTTGATACTATGCTAGTGTT 57.099 32.000 6.21 0.00 39.81 3.32
2310 2567 8.991243 ACGTTTTTGATACTATGCTAGTGTTA 57.009 30.769 6.21 0.00 39.81 2.41
2311 2568 9.426837 ACGTTTTTGATACTATGCTAGTGTTAA 57.573 29.630 6.21 1.48 39.81 2.01
2312 2569 9.901724 CGTTTTTGATACTATGCTAGTGTTAAG 57.098 33.333 6.21 0.00 39.81 1.85
2355 2612 9.588096 AAGATGAAGGGAGTAGTAATTTTTGTT 57.412 29.630 0.00 0.00 0.00 2.83
2356 2613 9.014297 AGATGAAGGGAGTAGTAATTTTTGTTG 57.986 33.333 0.00 0.00 0.00 3.33
2357 2614 6.977213 TGAAGGGAGTAGTAATTTTTGTTGC 58.023 36.000 0.00 0.00 0.00 4.17
2358 2615 5.977489 AGGGAGTAGTAATTTTTGTTGCC 57.023 39.130 0.00 0.00 0.00 4.52
2359 2616 4.457949 AGGGAGTAGTAATTTTTGTTGCCG 59.542 41.667 0.00 0.00 0.00 5.69
2360 2617 4.380128 GGGAGTAGTAATTTTTGTTGCCGG 60.380 45.833 0.00 0.00 0.00 6.13
2361 2618 4.216902 GGAGTAGTAATTTTTGTTGCCGGT 59.783 41.667 1.90 0.00 0.00 5.28
2362 2619 5.412286 GGAGTAGTAATTTTTGTTGCCGGTA 59.588 40.000 1.90 0.00 0.00 4.02
2363 2620 6.245115 AGTAGTAATTTTTGTTGCCGGTAC 57.755 37.500 1.90 2.15 0.00 3.34
2364 2621 4.508461 AGTAATTTTTGTTGCCGGTACC 57.492 40.909 1.90 0.16 0.00 3.34
2365 2622 3.890147 AGTAATTTTTGTTGCCGGTACCA 59.110 39.130 13.54 0.00 0.00 3.25
2366 2623 4.525100 AGTAATTTTTGTTGCCGGTACCAT 59.475 37.500 13.54 0.00 0.00 3.55
2367 2624 2.802787 TTTTTGTTGCCGGTACCATG 57.197 45.000 13.54 3.14 0.00 3.66
2368 2625 0.315568 TTTTGTTGCCGGTACCATGC 59.684 50.000 13.54 14.32 0.00 4.06
2369 2626 0.823769 TTTGTTGCCGGTACCATGCA 60.824 50.000 19.32 19.32 0.00 3.96
2370 2627 0.610509 TTGTTGCCGGTACCATGCAT 60.611 50.000 22.66 0.00 34.51 3.96
2371 2628 1.311651 TGTTGCCGGTACCATGCATG 61.312 55.000 22.66 20.19 34.51 4.06
2381 2638 2.632643 CCATGCATGGTATCACCGG 58.367 57.895 33.68 8.51 42.58 5.28
2382 2639 1.518056 CCATGCATGGTATCACCGGC 61.518 60.000 33.68 5.21 42.58 6.13
2383 2640 2.993853 TGCATGGTATCACCGGCA 59.006 55.556 0.00 9.59 45.05 5.69
2384 2641 1.153188 TGCATGGTATCACCGGCAG 60.153 57.895 0.00 0.00 43.29 4.85
2385 2642 1.893808 GCATGGTATCACCGGCAGG 60.894 63.158 0.00 0.00 42.58 4.85
2395 2652 3.834726 CCGGCAGGTGTGACAAAA 58.165 55.556 0.00 0.00 0.00 2.44
2396 2653 2.340427 CCGGCAGGTGTGACAAAAT 58.660 52.632 0.00 0.00 0.00 1.82
2397 2654 0.673437 CCGGCAGGTGTGACAAAATT 59.327 50.000 0.00 0.00 0.00 1.82
2398 2655 1.068434 CCGGCAGGTGTGACAAAATTT 59.932 47.619 0.00 0.00 0.00 1.82
2399 2656 2.294791 CCGGCAGGTGTGACAAAATTTA 59.705 45.455 0.00 0.00 0.00 1.40
2400 2657 3.305110 CGGCAGGTGTGACAAAATTTAC 58.695 45.455 0.00 0.00 0.00 2.01
2401 2658 3.243234 CGGCAGGTGTGACAAAATTTACA 60.243 43.478 0.00 0.00 0.00 2.41
2402 2659 4.688021 GGCAGGTGTGACAAAATTTACAA 58.312 39.130 0.00 0.00 0.00 2.41
2403 2660 5.112686 GGCAGGTGTGACAAAATTTACAAA 58.887 37.500 0.00 0.00 0.00 2.83
2404 2661 5.234116 GGCAGGTGTGACAAAATTTACAAAG 59.766 40.000 0.00 0.00 0.00 2.77
2405 2662 5.276820 GCAGGTGTGACAAAATTTACAAAGC 60.277 40.000 0.00 0.00 0.00 3.51
2406 2663 6.042143 CAGGTGTGACAAAATTTACAAAGCT 58.958 36.000 8.18 8.18 0.00 3.74
2407 2664 6.019640 CAGGTGTGACAAAATTTACAAAGCTG 60.020 38.462 18.58 18.58 38.87 4.24
2408 2665 5.276820 GGTGTGACAAAATTTACAAAGCTGC 60.277 40.000 0.00 0.00 0.00 5.25
2409 2666 4.502282 TGTGACAAAATTTACAAAGCTGCG 59.498 37.500 0.00 0.00 0.00 5.18
2410 2667 4.047822 TGACAAAATTTACAAAGCTGCGG 58.952 39.130 0.00 0.00 0.00 5.69
2411 2668 3.389221 ACAAAATTTACAAAGCTGCGGG 58.611 40.909 0.00 0.00 0.00 6.13
2412 2669 2.736192 CAAAATTTACAAAGCTGCGGGG 59.264 45.455 0.00 0.00 0.00 5.73
2413 2670 0.246360 AATTTACAAAGCTGCGGGGC 59.754 50.000 0.00 0.00 0.00 5.80
2414 2671 1.604147 ATTTACAAAGCTGCGGGGCC 61.604 55.000 0.00 0.00 0.00 5.80
2415 2672 2.706952 TTTACAAAGCTGCGGGGCCT 62.707 55.000 0.84 0.00 0.00 5.19
2416 2673 1.843462 TTACAAAGCTGCGGGGCCTA 61.843 55.000 0.84 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.883744 AAGAAGCGCCACGGTCAGG 62.884 63.158 2.29 0.00 36.27 3.86
20 21 2.357517 AAGAAGCGCCACGGTCAG 60.358 61.111 2.29 0.00 36.27 3.51
21 22 2.357034 GAAGAAGCGCCACGGTCA 60.357 61.111 2.29 0.00 36.27 4.02
22 23 1.627550 GAAGAAGAAGCGCCACGGTC 61.628 60.000 2.29 2.05 36.27 4.79
23 24 1.668151 GAAGAAGAAGCGCCACGGT 60.668 57.895 2.29 0.00 40.00 4.83
24 25 0.951040 AAGAAGAAGAAGCGCCACGG 60.951 55.000 2.29 0.00 0.00 4.94
25 26 0.164647 CAAGAAGAAGAAGCGCCACG 59.835 55.000 2.29 0.00 0.00 4.94
26 27 0.519077 CCAAGAAGAAGAAGCGCCAC 59.481 55.000 2.29 0.00 0.00 5.01
27 28 1.237285 GCCAAGAAGAAGAAGCGCCA 61.237 55.000 2.29 0.00 0.00 5.69
28 29 1.237285 TGCCAAGAAGAAGAAGCGCC 61.237 55.000 2.29 0.00 0.00 6.53
29 30 0.167689 CTGCCAAGAAGAAGAAGCGC 59.832 55.000 0.00 0.00 0.00 5.92
30 31 0.801251 CCTGCCAAGAAGAAGAAGCG 59.199 55.000 0.00 0.00 0.00 4.68
31 32 1.172175 CCCTGCCAAGAAGAAGAAGC 58.828 55.000 0.00 0.00 0.00 3.86
32 33 1.172175 GCCCTGCCAAGAAGAAGAAG 58.828 55.000 0.00 0.00 0.00 2.85
33 34 3.346426 GCCCTGCCAAGAAGAAGAA 57.654 52.632 0.00 0.00 0.00 2.52
104 105 4.838152 CATGCCACCGGGTCCTCG 62.838 72.222 6.32 0.00 36.17 4.63
105 106 4.489771 CCATGCCACCGGGTCCTC 62.490 72.222 6.32 0.00 36.17 3.71
114 115 2.852563 TATGTGCCACCCCATGCCAC 62.853 60.000 0.00 0.00 0.00 5.01
115 116 1.947232 ATATGTGCCACCCCATGCCA 61.947 55.000 0.00 0.00 0.00 4.92
116 117 1.152483 ATATGTGCCACCCCATGCC 60.152 57.895 0.00 0.00 0.00 4.40
117 118 0.178981 AGATATGTGCCACCCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
118 119 1.422781 AGAGATATGTGCCACCCCATG 59.577 52.381 0.00 0.00 0.00 3.66
119 120 1.825105 AGAGATATGTGCCACCCCAT 58.175 50.000 0.00 0.00 0.00 4.00
120 121 1.490490 GAAGAGATATGTGCCACCCCA 59.510 52.381 0.00 0.00 0.00 4.96
121 122 1.541233 CGAAGAGATATGTGCCACCCC 60.541 57.143 0.00 0.00 0.00 4.95
122 123 1.871080 CGAAGAGATATGTGCCACCC 58.129 55.000 0.00 0.00 0.00 4.61
123 124 1.221414 GCGAAGAGATATGTGCCACC 58.779 55.000 0.00 0.00 0.00 4.61
124 125 0.855349 CGCGAAGAGATATGTGCCAC 59.145 55.000 0.00 0.00 0.00 5.01
125 126 0.249447 CCGCGAAGAGATATGTGCCA 60.249 55.000 8.23 0.00 0.00 4.92
126 127 0.249489 ACCGCGAAGAGATATGTGCC 60.249 55.000 8.23 0.00 0.00 5.01
127 128 0.855349 CACCGCGAAGAGATATGTGC 59.145 55.000 8.23 0.00 0.00 4.57
128 129 1.491670 CCACCGCGAAGAGATATGTG 58.508 55.000 8.23 3.18 0.00 3.21
129 130 0.389391 CCCACCGCGAAGAGATATGT 59.611 55.000 8.23 0.00 0.00 2.29
130 131 0.673985 TCCCACCGCGAAGAGATATG 59.326 55.000 8.23 0.00 0.00 1.78
131 132 0.962489 CTCCCACCGCGAAGAGATAT 59.038 55.000 8.23 0.00 0.00 1.63
132 133 1.735376 GCTCCCACCGCGAAGAGATA 61.735 60.000 8.23 0.00 0.00 1.98
133 134 3.082579 GCTCCCACCGCGAAGAGAT 62.083 63.158 8.23 0.00 0.00 2.75
134 135 3.760035 GCTCCCACCGCGAAGAGA 61.760 66.667 8.23 0.00 0.00 3.10
135 136 3.764466 AGCTCCCACCGCGAAGAG 61.764 66.667 8.23 9.00 0.00 2.85
136 137 4.069232 CAGCTCCCACCGCGAAGA 62.069 66.667 8.23 0.00 0.00 2.87
161 162 4.779733 TCCCCTCGCTCCCAGACC 62.780 72.222 0.00 0.00 0.00 3.85
162 163 3.462678 GTCCCCTCGCTCCCAGAC 61.463 72.222 0.00 0.00 0.00 3.51
226 227 4.209866 AATCGCCATCCCCTGCCC 62.210 66.667 0.00 0.00 0.00 5.36
227 228 2.908940 CAATCGCCATCCCCTGCC 60.909 66.667 0.00 0.00 0.00 4.85
228 229 3.599704 GCAATCGCCATCCCCTGC 61.600 66.667 0.00 0.00 0.00 4.85
245 246 4.615834 GACTAGCGCGCGAGGAGG 62.616 72.222 37.83 19.53 0.00 4.30
246 247 3.187699 ATGACTAGCGCGCGAGGAG 62.188 63.158 37.83 28.12 0.00 3.69
247 248 3.182472 GATGACTAGCGCGCGAGGA 62.182 63.158 37.83 26.69 0.00 3.71
248 249 2.727647 GATGACTAGCGCGCGAGG 60.728 66.667 37.83 27.10 0.00 4.63
249 250 2.727647 GGATGACTAGCGCGCGAG 60.728 66.667 34.82 34.82 0.00 5.03
250 251 2.551097 TTTGGATGACTAGCGCGCGA 62.551 55.000 37.18 21.03 0.00 5.87
251 252 2.082437 CTTTGGATGACTAGCGCGCG 62.082 60.000 28.44 28.44 0.00 6.86
252 253 1.638467 CTTTGGATGACTAGCGCGC 59.362 57.895 26.66 26.66 0.00 6.86
253 254 1.638467 GCTTTGGATGACTAGCGCG 59.362 57.895 0.00 0.00 0.00 6.86
254 255 0.462759 AGGCTTTGGATGACTAGCGC 60.463 55.000 0.00 0.00 34.50 5.92
255 256 1.576356 GAGGCTTTGGATGACTAGCG 58.424 55.000 0.00 0.00 34.50 4.26
256 257 1.488393 AGGAGGCTTTGGATGACTAGC 59.512 52.381 0.00 0.00 0.00 3.42
257 258 2.744494 GCAGGAGGCTTTGGATGACTAG 60.744 54.545 0.00 0.00 40.25 2.57
258 259 1.210478 GCAGGAGGCTTTGGATGACTA 59.790 52.381 0.00 0.00 40.25 2.59
259 260 0.034670 GCAGGAGGCTTTGGATGACT 60.035 55.000 0.00 0.00 40.25 3.41
260 261 1.034292 GGCAGGAGGCTTTGGATGAC 61.034 60.000 0.00 0.00 44.01 3.06
261 262 1.304282 GGCAGGAGGCTTTGGATGA 59.696 57.895 0.00 0.00 44.01 2.92
262 263 1.755783 GGGCAGGAGGCTTTGGATG 60.756 63.158 0.00 0.00 44.01 3.51
263 264 2.220786 CTGGGCAGGAGGCTTTGGAT 62.221 60.000 0.00 0.00 44.01 3.41
264 265 2.858476 TGGGCAGGAGGCTTTGGA 60.858 61.111 0.00 0.00 44.01 3.53
265 266 2.362120 CTGGGCAGGAGGCTTTGG 60.362 66.667 0.00 0.00 44.01 3.28
266 267 1.378250 CTCTGGGCAGGAGGCTTTG 60.378 63.158 0.00 0.00 44.01 2.77
267 268 2.610519 CCTCTGGGCAGGAGGCTTT 61.611 63.158 11.11 0.00 42.95 3.51
268 269 3.013932 CCTCTGGGCAGGAGGCTT 61.014 66.667 11.11 0.00 42.95 4.35
276 277 4.804420 ATCCCGCTCCTCTGGGCA 62.804 66.667 0.00 0.00 45.60 5.36
277 278 3.934962 GATCCCGCTCCTCTGGGC 61.935 72.222 0.00 0.00 45.60 5.36
279 280 3.610669 CCGATCCCGCTCCTCTGG 61.611 72.222 0.00 0.00 0.00 3.86
280 281 4.292178 GCCGATCCCGCTCCTCTG 62.292 72.222 0.00 0.00 0.00 3.35
290 291 3.703127 GATACCCGGGGCCGATCC 61.703 72.222 27.92 2.30 42.83 3.36
291 292 4.065281 CGATACCCGGGGCCGATC 62.065 72.222 27.92 19.39 42.83 3.69
317 318 2.429907 GATGATCGCCGCTCTCCG 60.430 66.667 0.00 0.00 0.00 4.63
318 319 1.663074 GTGATGATCGCCGCTCTCC 60.663 63.158 0.00 0.00 0.00 3.71
319 320 2.013483 CGTGATGATCGCCGCTCTC 61.013 63.158 0.00 0.00 0.00 3.20
320 321 2.026734 CGTGATGATCGCCGCTCT 59.973 61.111 0.00 0.00 0.00 4.09
321 322 3.032609 CCGTGATGATCGCCGCTC 61.033 66.667 0.00 0.00 0.00 5.03
327 328 3.032609 GAGCCGCCGTGATGATCG 61.033 66.667 0.00 0.00 0.00 3.69
328 329 1.663074 GAGAGCCGCCGTGATGATC 60.663 63.158 0.00 0.00 0.00 2.92
329 330 2.419198 GAGAGCCGCCGTGATGAT 59.581 61.111 0.00 0.00 0.00 2.45
330 331 3.838271 GGAGAGCCGCCGTGATGA 61.838 66.667 0.00 0.00 0.00 2.92
331 332 4.899239 GGGAGAGCCGCCGTGATG 62.899 72.222 0.00 0.00 33.83 3.07
373 374 1.009389 CCTGCGTCGTGAAGAGGAAC 61.009 60.000 0.00 0.00 36.91 3.62
374 375 1.289066 CCTGCGTCGTGAAGAGGAA 59.711 57.895 0.00 0.00 36.91 3.36
375 376 2.636412 CCCTGCGTCGTGAAGAGGA 61.636 63.158 0.00 0.00 36.91 3.71
376 377 2.125912 CCCTGCGTCGTGAAGAGG 60.126 66.667 0.00 0.00 37.76 3.69
377 378 2.811317 GCCCTGCGTCGTGAAGAG 60.811 66.667 0.00 0.00 0.00 2.85
388 389 4.785453 CTTCCCCTGACGCCCTGC 62.785 72.222 0.00 0.00 0.00 4.85
389 390 4.101448 CCTTCCCCTGACGCCCTG 62.101 72.222 0.00 0.00 0.00 4.45
390 391 4.332543 TCCTTCCCCTGACGCCCT 62.333 66.667 0.00 0.00 0.00 5.19
391 392 4.097361 GTCCTTCCCCTGACGCCC 62.097 72.222 0.00 0.00 0.00 6.13
392 393 4.452733 CGTCCTTCCCCTGACGCC 62.453 72.222 0.00 0.00 46.41 5.68
395 396 2.284405 TCCCGTCCTTCCCCTGAC 60.284 66.667 0.00 0.00 0.00 3.51
396 397 2.038975 CTCCCGTCCTTCCCCTGA 59.961 66.667 0.00 0.00 0.00 3.86
397 398 3.083997 CCTCCCGTCCTTCCCCTG 61.084 72.222 0.00 0.00 0.00 4.45
401 402 3.471806 GAGGCCTCCCGTCCTTCC 61.472 72.222 23.19 0.00 35.76 3.46
402 403 3.839432 CGAGGCCTCCCGTCCTTC 61.839 72.222 27.20 0.00 35.76 3.46
450 451 4.176752 GTGGGACGATGGGGCCTC 62.177 72.222 0.84 0.00 0.00 4.70
451 452 4.741239 AGTGGGACGATGGGGCCT 62.741 66.667 0.84 0.00 0.00 5.19
452 453 4.176752 GAGTGGGACGATGGGGCC 62.177 72.222 0.00 0.00 0.00 5.80
453 454 3.391665 CTGAGTGGGACGATGGGGC 62.392 68.421 0.00 0.00 0.00 5.80
454 455 2.903357 CTGAGTGGGACGATGGGG 59.097 66.667 0.00 0.00 0.00 4.96
455 456 2.187946 GCTGAGTGGGACGATGGG 59.812 66.667 0.00 0.00 0.00 4.00
456 457 2.184020 TTGGCTGAGTGGGACGATGG 62.184 60.000 0.00 0.00 0.00 3.51
457 458 0.742281 CTTGGCTGAGTGGGACGATG 60.742 60.000 0.00 0.00 0.00 3.84
458 459 0.904865 TCTTGGCTGAGTGGGACGAT 60.905 55.000 0.00 0.00 0.00 3.73
459 460 1.118965 TTCTTGGCTGAGTGGGACGA 61.119 55.000 0.00 0.00 0.00 4.20
460 461 0.951040 GTTCTTGGCTGAGTGGGACG 60.951 60.000 0.00 0.00 0.00 4.79
461 462 0.398318 AGTTCTTGGCTGAGTGGGAC 59.602 55.000 0.00 0.00 0.00 4.46
462 463 1.140312 AAGTTCTTGGCTGAGTGGGA 58.860 50.000 0.00 0.00 0.00 4.37
463 464 2.303022 TCTAAGTTCTTGGCTGAGTGGG 59.697 50.000 0.00 0.00 0.00 4.61
464 465 3.259374 TCTCTAAGTTCTTGGCTGAGTGG 59.741 47.826 0.00 0.00 0.00 4.00
465 466 4.493547 CTCTCTAAGTTCTTGGCTGAGTG 58.506 47.826 0.00 0.00 0.00 3.51
466 467 3.056179 GCTCTCTAAGTTCTTGGCTGAGT 60.056 47.826 14.23 0.00 0.00 3.41
467 468 3.195396 AGCTCTCTAAGTTCTTGGCTGAG 59.805 47.826 11.11 11.11 0.00 3.35
468 469 3.169099 AGCTCTCTAAGTTCTTGGCTGA 58.831 45.455 0.00 0.00 0.00 4.26
484 485 1.181741 TGAGTTCTGCCGTGAGCTCT 61.182 55.000 16.19 0.00 42.34 4.09
503 504 4.026052 CCTTCCATGGCAAGGTTTCTAAT 58.974 43.478 24.19 0.00 36.40 1.73
514 515 3.768757 CCTTTATGTTTCCTTCCATGGCA 59.231 43.478 6.96 0.00 0.00 4.92
523 524 5.435291 CTGATCTGCTCCTTTATGTTTCCT 58.565 41.667 0.00 0.00 0.00 3.36
529 530 2.877168 GTGCCTGATCTGCTCCTTTATG 59.123 50.000 8.84 0.00 0.00 1.90
539 540 0.545171 ACTGGGATGTGCCTGATCTG 59.455 55.000 4.54 0.00 36.66 2.90
545 546 1.219773 ATGATCACTGGGATGTGCCT 58.780 50.000 0.00 0.00 36.00 4.75
547 548 2.551459 GCTTATGATCACTGGGATGTGC 59.449 50.000 0.00 0.00 36.00 4.57
604 605 6.183360 GCAACTGATCTGAATCTGTACTTGAC 60.183 42.308 6.60 0.00 41.59 3.18
799 800 8.006298 AGTTGTGAAACTCATTTTGACCATAA 57.994 30.769 0.00 0.00 38.04 1.90
889 890 8.863872 AACTGGTAGTATCTGCAATTTAAACT 57.136 30.769 0.00 0.00 0.00 2.66
912 1092 7.752557 TTTGGTTACAATCGTTTTGGTTAAC 57.247 32.000 0.00 0.00 36.29 2.01
1028 1277 2.637872 CCAACAAGGACCTCTAGTTCCA 59.362 50.000 0.00 0.00 41.22 3.53
1061 1310 6.203723 GTCTTCAGGAATGGCATTACATAGTC 59.796 42.308 23.81 11.28 0.00 2.59
1063 1312 6.294473 AGTCTTCAGGAATGGCATTACATAG 58.706 40.000 23.81 16.25 0.00 2.23
1145 1394 6.403636 GGGTGTCATATTTGAGTTAAGTGCAG 60.404 42.308 0.00 0.00 30.85 4.41
1297 1546 1.429930 TCAGCCCTTGAAGGTGTACA 58.570 50.000 10.82 0.00 31.93 2.90
1434 1683 4.154015 TCCTAAATGCATGTTCAAGTGACG 59.846 41.667 0.00 0.00 0.00 4.35
1462 1715 4.097437 CCGAGTATAGACCAGTAGTGCAAA 59.903 45.833 0.00 0.00 0.00 3.68
1483 1736 6.302078 GCAAAAACAAAAACAAAAGAAGTCCG 59.698 34.615 0.00 0.00 0.00 4.79
1523 1776 1.004440 GAGCGTGCCTTCAAGTCCT 60.004 57.895 0.00 0.00 0.00 3.85
1527 1780 2.322161 CAAATTGAGCGTGCCTTCAAG 58.678 47.619 3.45 0.00 0.00 3.02
1566 1819 9.241919 TCTTGGATGCAATGAATAACTCTTTAA 57.758 29.630 0.00 0.00 0.00 1.52
1567 1820 8.806429 TCTTGGATGCAATGAATAACTCTTTA 57.194 30.769 0.00 0.00 0.00 1.85
1568 1821 7.707624 TCTTGGATGCAATGAATAACTCTTT 57.292 32.000 0.00 0.00 0.00 2.52
1569 1822 7.201884 CCATCTTGGATGCAATGAATAACTCTT 60.202 37.037 0.00 0.00 40.96 2.85
1570 1823 6.264744 CCATCTTGGATGCAATGAATAACTCT 59.735 38.462 0.00 0.00 40.96 3.24
1571 1824 6.263842 TCCATCTTGGATGCAATGAATAACTC 59.736 38.462 0.00 0.00 42.67 3.01
1572 1825 6.131264 TCCATCTTGGATGCAATGAATAACT 58.869 36.000 0.00 0.00 42.67 2.24
1714 1967 7.498900 TCAACATCCATACATCCATGTTCTTAC 59.501 37.037 0.00 0.00 41.97 2.34
1721 1974 6.887626 TTCATCAACATCCATACATCCATG 57.112 37.500 0.00 0.00 0.00 3.66
1728 1981 6.630444 AAGCTGATTCATCAACATCCATAC 57.370 37.500 0.00 0.00 36.18 2.39
1733 1986 5.946298 TCACAAAGCTGATTCATCAACATC 58.054 37.500 0.00 0.00 36.18 3.06
1747 2000 6.636705 ACATTTCATATTGCATCACAAAGCT 58.363 32.000 0.00 0.00 42.86 3.74
1759 2012 7.433131 GCACAACTACCATGACATTTCATATTG 59.567 37.037 0.00 0.00 40.79 1.90
1799 2052 8.921670 CGTTGTAATGCTTAAAATTTAAGCCTT 58.078 29.630 34.05 31.63 46.78 4.35
1816 2069 2.826738 CCCCGGCCCGTTGTAATG 60.827 66.667 0.85 0.00 0.00 1.90
1817 2070 4.117973 CCCCCGGCCCGTTGTAAT 62.118 66.667 0.85 0.00 0.00 1.89
1829 2082 4.939368 TGCCGAACAACACCCCCG 62.939 66.667 0.00 0.00 0.00 5.73
1830 2083 3.292159 GTGCCGAACAACACCCCC 61.292 66.667 0.00 0.00 0.00 5.40
1875 2128 5.077564 CCTCATGGATTGATGGATGTCATT 58.922 41.667 0.00 0.00 33.62 2.57
1877 2130 3.749632 GCCTCATGGATTGATGGATGTCA 60.750 47.826 0.00 0.00 32.72 3.58
1884 2137 1.325355 GGGTGCCTCATGGATTGATG 58.675 55.000 0.00 0.00 32.72 3.07
1954 2207 2.113233 AGGCTCCTCTCCATCCATGATA 59.887 50.000 0.00 0.00 0.00 2.15
1993 2247 8.727910 TGTTACTATATATGTTGTCGCTCCTAG 58.272 37.037 0.00 0.00 0.00 3.02
2039 2293 5.299279 ACTTTCAGTATTTGTGGTGGTTGAG 59.701 40.000 0.00 0.00 0.00 3.02
2042 2296 8.161425 AGTATACTTTCAGTATTTGTGGTGGTT 58.839 33.333 0.00 0.00 38.17 3.67
2043 2297 7.686434 AGTATACTTTCAGTATTTGTGGTGGT 58.314 34.615 0.00 0.00 38.17 4.16
2062 2316 9.998106 ATGGTACCAATTGTGATCTAAGTATAC 57.002 33.333 20.76 0.00 0.00 1.47
2085 2342 8.070171 GCAGTGTTAAGTATACTAAATGCATGG 58.930 37.037 17.84 0.00 0.00 3.66
2097 2354 4.571919 ACGCAAAGGCAGTGTTAAGTATA 58.428 39.130 0.00 0.00 41.24 1.47
2098 2355 3.408634 ACGCAAAGGCAGTGTTAAGTAT 58.591 40.909 0.00 0.00 41.24 2.12
2099 2356 2.803956 GACGCAAAGGCAGTGTTAAGTA 59.196 45.455 0.00 0.00 41.24 2.24
2100 2357 1.602377 GACGCAAAGGCAGTGTTAAGT 59.398 47.619 0.00 0.00 41.24 2.24
2101 2358 1.873591 AGACGCAAAGGCAGTGTTAAG 59.126 47.619 0.00 0.00 41.24 1.85
2102 2359 1.961793 AGACGCAAAGGCAGTGTTAA 58.038 45.000 0.00 0.00 41.24 2.01
2103 2360 2.036733 AGTAGACGCAAAGGCAGTGTTA 59.963 45.455 0.00 0.00 41.24 2.41
2104 2361 1.202651 AGTAGACGCAAAGGCAGTGTT 60.203 47.619 0.00 0.00 41.24 3.32
2105 2362 0.393077 AGTAGACGCAAAGGCAGTGT 59.607 50.000 0.00 0.00 41.24 3.55
2106 2363 1.512926 AAGTAGACGCAAAGGCAGTG 58.487 50.000 0.00 0.00 41.24 3.66
2107 2364 3.064931 GTTAAGTAGACGCAAAGGCAGT 58.935 45.455 0.00 0.00 41.24 4.40
2108 2365 3.064207 TGTTAAGTAGACGCAAAGGCAG 58.936 45.455 0.00 0.00 41.24 4.85
2109 2366 2.803956 GTGTTAAGTAGACGCAAAGGCA 59.196 45.455 0.00 0.00 41.24 4.75
2110 2367 3.064931 AGTGTTAAGTAGACGCAAAGGC 58.935 45.455 0.00 0.00 0.00 4.35
2111 2368 3.120649 GCAGTGTTAAGTAGACGCAAAGG 60.121 47.826 0.00 0.00 0.00 3.11
2112 2369 3.120649 GGCAGTGTTAAGTAGACGCAAAG 60.121 47.826 0.00 0.00 0.00 2.77
2113 2370 2.803956 GGCAGTGTTAAGTAGACGCAAA 59.196 45.455 0.00 0.00 0.00 3.68
2114 2371 2.036733 AGGCAGTGTTAAGTAGACGCAA 59.963 45.455 0.00 0.00 0.00 4.85
2115 2372 1.616865 AGGCAGTGTTAAGTAGACGCA 59.383 47.619 0.00 0.00 0.00 5.24
2116 2373 2.365408 AGGCAGTGTTAAGTAGACGC 57.635 50.000 0.00 0.00 0.00 5.19
2117 2374 5.467705 ACTAAAGGCAGTGTTAAGTAGACG 58.532 41.667 0.00 0.00 0.00 4.18
2126 2383 9.113838 CTGAAATGATATACTAAAGGCAGTGTT 57.886 33.333 0.00 0.00 0.00 3.32
2127 2384 7.716998 CCTGAAATGATATACTAAAGGCAGTGT 59.283 37.037 0.00 0.00 0.00 3.55
2128 2385 7.308229 GCCTGAAATGATATACTAAAGGCAGTG 60.308 40.741 5.04 0.00 45.56 3.66
2129 2386 6.712547 GCCTGAAATGATATACTAAAGGCAGT 59.287 38.462 5.04 0.00 45.56 4.40
2130 2387 7.138692 GCCTGAAATGATATACTAAAGGCAG 57.861 40.000 5.04 0.00 45.56 4.85
2132 2389 6.712547 AGTGCCTGAAATGATATACTAAAGGC 59.287 38.462 2.94 2.94 46.26 4.35
2133 2390 7.716998 ACAGTGCCTGAAATGATATACTAAAGG 59.283 37.037 8.91 0.00 35.18 3.11
2134 2391 8.668510 ACAGTGCCTGAAATGATATACTAAAG 57.331 34.615 8.91 0.00 35.18 1.85
2135 2392 9.764363 CTACAGTGCCTGAAATGATATACTAAA 57.236 33.333 8.91 0.00 35.18 1.85
2136 2393 7.872993 GCTACAGTGCCTGAAATGATATACTAA 59.127 37.037 8.91 0.00 35.18 2.24
2137 2394 7.015195 TGCTACAGTGCCTGAAATGATATACTA 59.985 37.037 8.91 0.00 35.18 1.82
2138 2395 6.183361 TGCTACAGTGCCTGAAATGATATACT 60.183 38.462 8.91 0.00 35.18 2.12
2139 2396 5.991606 TGCTACAGTGCCTGAAATGATATAC 59.008 40.000 8.91 0.00 35.18 1.47
2140 2397 6.173427 TGCTACAGTGCCTGAAATGATATA 57.827 37.500 8.91 0.00 35.18 0.86
2141 2398 5.039920 TGCTACAGTGCCTGAAATGATAT 57.960 39.130 8.91 0.00 35.18 1.63
2142 2399 4.445453 CTGCTACAGTGCCTGAAATGATA 58.555 43.478 8.91 0.00 35.18 2.15
2143 2400 3.276857 CTGCTACAGTGCCTGAAATGAT 58.723 45.455 8.91 0.00 35.18 2.45
2144 2401 2.703416 CTGCTACAGTGCCTGAAATGA 58.297 47.619 8.91 0.00 35.18 2.57
2145 2402 1.131883 GCTGCTACAGTGCCTGAAATG 59.868 52.381 8.91 0.00 35.18 2.32
2146 2403 1.271543 TGCTGCTACAGTGCCTGAAAT 60.272 47.619 8.91 0.00 35.18 2.17
2147 2404 0.108396 TGCTGCTACAGTGCCTGAAA 59.892 50.000 8.91 0.00 35.18 2.69
2148 2405 0.603707 GTGCTGCTACAGTGCCTGAA 60.604 55.000 8.91 0.00 35.18 3.02
2149 2406 1.004560 GTGCTGCTACAGTGCCTGA 60.005 57.895 8.91 0.00 35.18 3.86
2150 2407 1.004080 AGTGCTGCTACAGTGCCTG 60.004 57.895 0.00 1.16 37.52 4.85
2151 2408 1.004080 CAGTGCTGCTACAGTGCCT 60.004 57.895 0.00 0.00 34.41 4.75
2152 2409 0.037326 TACAGTGCTGCTACAGTGCC 60.037 55.000 12.51 0.00 43.47 5.01
2153 2410 1.354040 CTACAGTGCTGCTACAGTGC 58.646 55.000 12.51 0.00 43.47 4.40
2154 2411 1.404717 CCCTACAGTGCTGCTACAGTG 60.405 57.143 11.40 11.40 44.88 3.66
2155 2412 0.898320 CCCTACAGTGCTGCTACAGT 59.102 55.000 0.00 3.62 33.43 3.55
2156 2413 0.460987 GCCCTACAGTGCTGCTACAG 60.461 60.000 0.00 0.00 34.12 2.74
2157 2414 1.191489 TGCCCTACAGTGCTGCTACA 61.191 55.000 0.00 0.00 0.00 2.74
2158 2415 0.741221 GTGCCCTACAGTGCTGCTAC 60.741 60.000 0.00 0.00 0.00 3.58
2159 2416 1.191489 TGTGCCCTACAGTGCTGCTA 61.191 55.000 0.00 0.00 33.42 3.49
2160 2417 2.348998 GTGCCCTACAGTGCTGCT 59.651 61.111 0.00 0.00 0.00 4.24
2161 2418 2.032528 TGTGCCCTACAGTGCTGC 59.967 61.111 0.00 0.00 33.42 5.25
2174 2431 2.107141 CTAGGCCGGCTACTGTGC 59.893 66.667 28.56 7.55 0.00 4.57
2175 2432 2.815308 CCTAGGCCGGCTACTGTG 59.185 66.667 28.56 12.60 0.00 3.66
2176 2433 3.155167 GCCTAGGCCGGCTACTGT 61.155 66.667 28.56 8.68 46.63 3.55
2193 2450 4.060667 ATTGGACCAAGCCCCGGG 62.061 66.667 15.80 15.80 0.00 5.73
2194 2451 2.440247 GATTGGACCAAGCCCCGG 60.440 66.667 11.58 0.00 0.00 5.73
2195 2452 1.000896 AAGATTGGACCAAGCCCCG 60.001 57.895 18.73 0.00 29.18 5.73
2196 2453 2.583472 CAAGATTGGACCAAGCCCC 58.417 57.895 18.73 4.92 29.18 5.80
2215 2472 1.455383 CCTAAATGCATGGGCGGACC 61.455 60.000 0.00 0.00 45.35 4.46
2216 2473 0.751643 ACCTAAATGCATGGGCGGAC 60.752 55.000 0.00 0.00 45.35 4.79
2217 2474 0.840617 TACCTAAATGCATGGGCGGA 59.159 50.000 0.00 0.00 45.35 5.54
2218 2475 1.686355 TTACCTAAATGCATGGGCGG 58.314 50.000 0.00 1.25 45.35 6.13
2219 2476 3.791973 TTTTACCTAAATGCATGGGCG 57.208 42.857 0.00 0.00 45.35 6.13
2240 2497 9.503399 AGAAAGTAGTTCAAACGATTAGGATTT 57.497 29.630 0.00 0.00 38.86 2.17
2243 2500 9.582431 CATAGAAAGTAGTTCAAACGATTAGGA 57.418 33.333 0.00 0.00 38.86 2.94
2244 2501 9.367444 ACATAGAAAGTAGTTCAAACGATTAGG 57.633 33.333 0.00 0.00 38.86 2.69
2246 2503 9.362539 GGACATAGAAAGTAGTTCAAACGATTA 57.637 33.333 0.00 0.00 38.86 1.75
2247 2504 7.333672 GGGACATAGAAAGTAGTTCAAACGATT 59.666 37.037 0.00 0.00 38.86 3.34
2248 2505 6.817140 GGGACATAGAAAGTAGTTCAAACGAT 59.183 38.462 0.00 0.00 38.86 3.73
2249 2506 6.161381 GGGACATAGAAAGTAGTTCAAACGA 58.839 40.000 0.00 0.00 38.86 3.85
2250 2507 5.929992 TGGGACATAGAAAGTAGTTCAAACG 59.070 40.000 0.00 0.00 38.86 3.60
2251 2508 7.159372 TCTGGGACATAGAAAGTAGTTCAAAC 58.841 38.462 0.00 0.00 36.69 2.93
2252 2509 7.311092 TCTGGGACATAGAAAGTAGTTCAAA 57.689 36.000 0.00 0.00 36.69 2.69
2253 2510 6.928348 TCTGGGACATAGAAAGTAGTTCAA 57.072 37.500 0.00 0.00 36.69 2.69
2254 2511 6.928348 TTCTGGGACATAGAAAGTAGTTCA 57.072 37.500 0.00 0.00 36.69 3.18
2261 2518 9.197694 CGTTCTTATATTCTGGGACATAGAAAG 57.802 37.037 0.00 0.00 37.67 2.62
2262 2519 8.701895 ACGTTCTTATATTCTGGGACATAGAAA 58.298 33.333 0.00 0.00 37.67 2.52
2263 2520 8.246430 ACGTTCTTATATTCTGGGACATAGAA 57.754 34.615 0.00 0.00 38.20 2.10
2264 2521 7.834881 ACGTTCTTATATTCTGGGACATAGA 57.165 36.000 0.00 0.00 38.20 1.98
2265 2522 8.888579 AAACGTTCTTATATTCTGGGACATAG 57.111 34.615 0.00 0.00 38.20 2.23
2266 2523 9.675464 AAAAACGTTCTTATATTCTGGGACATA 57.325 29.630 0.00 0.00 38.20 2.29
2267 2524 8.458843 CAAAAACGTTCTTATATTCTGGGACAT 58.541 33.333 0.00 0.00 38.20 3.06
2268 2525 7.662258 TCAAAAACGTTCTTATATTCTGGGACA 59.338 33.333 0.00 0.00 0.00 4.02
2269 2526 8.036273 TCAAAAACGTTCTTATATTCTGGGAC 57.964 34.615 0.00 0.00 0.00 4.46
2270 2527 8.801882 ATCAAAAACGTTCTTATATTCTGGGA 57.198 30.769 0.00 0.00 0.00 4.37
2271 2528 9.931210 GTATCAAAAACGTTCTTATATTCTGGG 57.069 33.333 0.00 0.00 0.00 4.45
2329 2586 9.588096 AACAAAAATTACTACTCCCTTCATCTT 57.412 29.630 0.00 0.00 0.00 2.40
2330 2587 9.014297 CAACAAAAATTACTACTCCCTTCATCT 57.986 33.333 0.00 0.00 0.00 2.90
2331 2588 7.755373 GCAACAAAAATTACTACTCCCTTCATC 59.245 37.037 0.00 0.00 0.00 2.92
2332 2589 7.309805 GGCAACAAAAATTACTACTCCCTTCAT 60.310 37.037 0.00 0.00 0.00 2.57
2333 2590 6.015772 GGCAACAAAAATTACTACTCCCTTCA 60.016 38.462 0.00 0.00 0.00 3.02
2334 2591 6.387465 GGCAACAAAAATTACTACTCCCTTC 58.613 40.000 0.00 0.00 0.00 3.46
2335 2592 5.048294 CGGCAACAAAAATTACTACTCCCTT 60.048 40.000 0.00 0.00 0.00 3.95
2336 2593 4.457949 CGGCAACAAAAATTACTACTCCCT 59.542 41.667 0.00 0.00 0.00 4.20
2337 2594 4.380128 CCGGCAACAAAAATTACTACTCCC 60.380 45.833 0.00 0.00 0.00 4.30
2338 2595 4.216902 ACCGGCAACAAAAATTACTACTCC 59.783 41.667 0.00 0.00 0.00 3.85
2339 2596 5.366829 ACCGGCAACAAAAATTACTACTC 57.633 39.130 0.00 0.00 0.00 2.59
2340 2597 5.181811 GGTACCGGCAACAAAAATTACTACT 59.818 40.000 0.00 0.00 0.00 2.57
2341 2598 5.048852 TGGTACCGGCAACAAAAATTACTAC 60.049 40.000 7.57 0.00 0.00 2.73
2342 2599 5.068636 TGGTACCGGCAACAAAAATTACTA 58.931 37.500 7.57 0.00 0.00 1.82
2343 2600 3.890147 TGGTACCGGCAACAAAAATTACT 59.110 39.130 7.57 0.00 0.00 2.24
2344 2601 4.240175 TGGTACCGGCAACAAAAATTAC 57.760 40.909 7.57 0.00 0.00 1.89
2345 2602 4.810790 CATGGTACCGGCAACAAAAATTA 58.189 39.130 7.57 0.00 0.00 1.40
2346 2603 3.658709 CATGGTACCGGCAACAAAAATT 58.341 40.909 7.57 0.00 0.00 1.82
2347 2604 2.611722 GCATGGTACCGGCAACAAAAAT 60.612 45.455 20.10 0.00 0.00 1.82
2348 2605 1.269831 GCATGGTACCGGCAACAAAAA 60.270 47.619 20.10 0.00 0.00 1.94
2349 2606 0.315568 GCATGGTACCGGCAACAAAA 59.684 50.000 20.10 0.00 0.00 2.44
2350 2607 0.823769 TGCATGGTACCGGCAACAAA 60.824 50.000 24.05 5.17 34.05 2.83
2351 2608 0.610509 ATGCATGGTACCGGCAACAA 60.611 50.000 28.16 10.85 41.43 2.83
2352 2609 1.001517 ATGCATGGTACCGGCAACA 60.002 52.632 28.16 13.65 41.43 3.33
2353 2610 1.433064 CATGCATGGTACCGGCAAC 59.567 57.895 28.16 8.80 41.43 4.17
2354 2611 1.752310 CCATGCATGGTACCGGCAA 60.752 57.895 33.68 15.67 43.05 4.52
2355 2612 2.124362 CCATGCATGGTACCGGCA 60.124 61.111 33.68 27.07 43.05 5.69
2364 2621 0.818852 TGCCGGTGATACCATGCATG 60.819 55.000 20.19 20.19 39.71 4.06
2365 2622 0.535780 CTGCCGGTGATACCATGCAT 60.536 55.000 1.90 0.00 42.42 3.96
2366 2623 1.153188 CTGCCGGTGATACCATGCA 60.153 57.895 1.90 10.53 41.53 3.96
2367 2624 1.893808 CCTGCCGGTGATACCATGC 60.894 63.158 1.90 1.18 38.47 4.06
2368 2625 1.526887 ACCTGCCGGTGATACCATG 59.473 57.895 1.90 0.00 43.51 3.66
2369 2626 4.066614 ACCTGCCGGTGATACCAT 57.933 55.556 1.90 0.00 43.51 3.55
2378 2635 0.673437 AATTTTGTCACACCTGCCGG 59.327 50.000 0.00 0.00 0.00 6.13
2379 2636 2.507339 AAATTTTGTCACACCTGCCG 57.493 45.000 0.00 0.00 0.00 5.69
2380 2637 4.314740 TGTAAATTTTGTCACACCTGCC 57.685 40.909 0.00 0.00 0.00 4.85
2381 2638 5.276820 GCTTTGTAAATTTTGTCACACCTGC 60.277 40.000 0.00 0.00 0.00 4.85
2382 2639 6.019640 CAGCTTTGTAAATTTTGTCACACCTG 60.020 38.462 0.00 0.00 0.00 4.00
2383 2640 6.042143 CAGCTTTGTAAATTTTGTCACACCT 58.958 36.000 0.00 0.00 0.00 4.00
2384 2641 5.276820 GCAGCTTTGTAAATTTTGTCACACC 60.277 40.000 0.00 0.00 0.00 4.16
2385 2642 5.554324 CGCAGCTTTGTAAATTTTGTCACAC 60.554 40.000 0.00 0.00 0.00 3.82
2386 2643 4.502282 CGCAGCTTTGTAAATTTTGTCACA 59.498 37.500 0.00 0.00 0.00 3.58
2387 2644 4.085107 CCGCAGCTTTGTAAATTTTGTCAC 60.085 41.667 0.00 0.00 0.00 3.67
2388 2645 4.047822 CCGCAGCTTTGTAAATTTTGTCA 58.952 39.130 0.00 0.00 0.00 3.58
2389 2646 3.428534 CCCGCAGCTTTGTAAATTTTGTC 59.571 43.478 0.00 0.00 0.00 3.18
2390 2647 3.389221 CCCGCAGCTTTGTAAATTTTGT 58.611 40.909 0.00 0.00 0.00 2.83
2391 2648 2.736192 CCCCGCAGCTTTGTAAATTTTG 59.264 45.455 0.00 0.00 0.00 2.44
2392 2649 2.870035 GCCCCGCAGCTTTGTAAATTTT 60.870 45.455 0.00 0.00 0.00 1.82
2393 2650 1.337728 GCCCCGCAGCTTTGTAAATTT 60.338 47.619 0.00 0.00 0.00 1.82
2394 2651 0.246360 GCCCCGCAGCTTTGTAAATT 59.754 50.000 0.00 0.00 0.00 1.82
2395 2652 1.604147 GGCCCCGCAGCTTTGTAAAT 61.604 55.000 0.00 0.00 0.00 1.40
2396 2653 2.272447 GGCCCCGCAGCTTTGTAAA 61.272 57.895 0.00 0.00 0.00 2.01
2397 2654 1.843462 TAGGCCCCGCAGCTTTGTAA 61.843 55.000 0.00 0.00 0.00 2.41
2398 2655 2.294839 TAGGCCCCGCAGCTTTGTA 61.295 57.895 0.00 0.00 0.00 2.41
2399 2656 3.646715 TAGGCCCCGCAGCTTTGT 61.647 61.111 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.