Multiple sequence alignment - TraesCS2A01G134600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G134600 chr2A 100.000 2288 0 0 1 2288 81037849 81040136 0.000000e+00 4226.0
1 TraesCS2A01G134600 chr2A 97.674 43 0 1 1484 1525 81039292 81039334 3.150000e-09 73.1
2 TraesCS2A01G134600 chr2A 97.674 43 0 1 1444 1486 81039332 81039373 3.150000e-09 73.1
3 TraesCS2A01G134600 chr6A 97.275 1321 32 3 1 1319 143446379 143445061 0.000000e+00 2237.0
4 TraesCS2A01G134600 chr7B 93.617 752 48 0 1 752 60596098 60596849 0.000000e+00 1123.0
5 TraesCS2A01G134600 chr7B 90.657 396 34 2 927 1319 60600846 60601241 7.240000e-145 523.0
6 TraesCS2A01G134600 chr7B 92.818 181 11 2 751 930 60600365 60600544 6.270000e-66 261.0
7 TraesCS2A01G134600 chr1D 91.870 738 39 3 591 1328 333008257 333007541 0.000000e+00 1011.0
8 TraesCS2A01G134600 chr2D 90.926 540 26 5 1595 2112 80258245 80258783 0.000000e+00 704.0
9 TraesCS2A01G134600 chr2D 93.478 92 4 1 2197 2288 80258946 80259035 3.960000e-28 135.0
10 TraesCS2A01G134600 chr5A 96.986 365 9 1 960 1322 687293139 687292775 1.500000e-171 612.0
11 TraesCS2A01G134600 chr5A 83.439 157 16 2 1321 1470 692778129 692777976 1.100000e-28 137.0
12 TraesCS2A01G134600 chr3A 96.407 167 6 0 1318 1484 621621518 621621684 2.240000e-70 276.0
13 TraesCS2A01G134600 chr3A 88.189 127 12 1 1320 1446 1579866 1579743 5.090000e-32 148.0
14 TraesCS2A01G134600 chr3A 93.846 65 3 1 1484 1547 621621644 621621708 1.870000e-16 97.1
15 TraesCS2A01G134600 chr6B 86.076 158 12 4 1320 1470 712471623 712471469 6.540000e-36 161.0
16 TraesCS2A01G134600 chrUn 88.889 99 9 2 1509 1607 368985371 368985275 1.110000e-23 121.0
17 TraesCS2A01G134600 chrUn 88.889 99 9 2 1509 1607 369033838 369033742 1.110000e-23 121.0
18 TraesCS2A01G134600 chrUn 88.889 99 9 2 1509 1607 438020243 438020339 1.110000e-23 121.0
19 TraesCS2A01G134600 chr2B 92.308 78 6 0 1964 2041 132009402 132009479 6.680000e-21 111.0
20 TraesCS2A01G134600 chr2B 97.674 43 1 0 1553 1595 408301643 408301601 8.770000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G134600 chr2A 81037849 81040136 2287 False 1457.400000 4226 98.449333 1 2288 3 chr2A.!!$F1 2287
1 TraesCS2A01G134600 chr6A 143445061 143446379 1318 True 2237.000000 2237 97.275000 1 1319 1 chr6A.!!$R1 1318
2 TraesCS2A01G134600 chr7B 60596098 60601241 5143 False 635.666667 1123 92.364000 1 1319 3 chr7B.!!$F1 1318
3 TraesCS2A01G134600 chr1D 333007541 333008257 716 True 1011.000000 1011 91.870000 591 1328 1 chr1D.!!$R1 737
4 TraesCS2A01G134600 chr2D 80258245 80259035 790 False 419.500000 704 92.202000 1595 2288 2 chr2D.!!$F1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 2.63058 ACCGTGCCAACCAAAAATACAT 59.369 40.909 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 6033 0.029834 GAATGGCCACGCTGCATAAG 59.97 55.0 8.16 0.0 0.0 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 5.049167 GCATAGAGGACAATGTCTTCTCAG 58.951 45.833 27.51 21.49 43.81 3.35
203 204 4.293494 ACTGACCATGAGGATGTCTATGT 58.707 43.478 0.00 0.00 38.69 2.29
360 361 2.630580 ACCGTGCCAACCAAAAATACAT 59.369 40.909 0.00 0.00 0.00 2.29
375 376 2.760634 TACATCAGTTCATGTGGCGT 57.239 45.000 0.00 0.00 37.57 5.68
600 601 5.535753 TTCTGCATGCTATACTGAAGCTA 57.464 39.130 20.33 0.00 40.73 3.32
602 603 6.106648 TCTGCATGCTATACTGAAGCTAAT 57.893 37.500 20.33 0.00 40.73 1.73
671 672 7.653311 GTGGACATGGAGGAATAAATTAAATGC 59.347 37.037 0.00 0.00 0.00 3.56
758 4276 7.691213 TCTCTTAATATGTGTGGTAACCCAAA 58.309 34.615 0.00 0.00 44.15 3.28
762 4280 9.179909 CTTAATATGTGTGGTAACCCAAATACA 57.820 33.333 0.00 0.00 44.15 2.29
778 4296 5.105635 CCAAATACAGGCACATCTGTCAAAT 60.106 40.000 0.45 0.00 43.82 2.32
1020 4843 4.082571 GGAATGACAAATGTGGAGGTTGAG 60.083 45.833 0.00 0.00 0.00 3.02
1070 4893 1.100510 CGAGGTACTGAATCGGACCA 58.899 55.000 8.70 0.00 41.55 4.02
1076 4899 0.324614 ACTGAATCGGACCATGCACA 59.675 50.000 0.00 0.00 0.00 4.57
1306 5129 8.450964 CAGTTTAAGTATGGAATCGATGTGTTT 58.549 33.333 0.00 0.00 0.00 2.83
1311 5134 8.731275 AAGTATGGAATCGATGTGTTTCATTA 57.269 30.769 0.00 0.00 36.83 1.90
1344 5167 9.628500 ACTTTATATTGGTCAAGAAAGGTATCC 57.372 33.333 14.41 0.00 0.00 2.59
1345 5168 9.853177 CTTTATATTGGTCAAGAAAGGTATCCT 57.147 33.333 7.23 0.00 33.87 3.24
1346 5169 9.627123 TTTATATTGGTCAAGAAAGGTATCCTG 57.373 33.333 0.00 0.00 32.13 3.86
1347 5170 4.993705 TTGGTCAAGAAAGGTATCCTGT 57.006 40.909 0.00 0.00 32.13 4.00
1348 5171 4.553330 TGGTCAAGAAAGGTATCCTGTC 57.447 45.455 0.00 0.00 38.13 3.51
1349 5172 3.056107 TGGTCAAGAAAGGTATCCTGTCG 60.056 47.826 0.93 0.00 42.49 4.35
1350 5173 3.056035 GGTCAAGAAAGGTATCCTGTCGT 60.056 47.826 0.93 0.00 42.49 4.34
1351 5174 4.159135 GGTCAAGAAAGGTATCCTGTCGTA 59.841 45.833 0.93 0.00 42.49 3.43
1352 5175 5.341617 GTCAAGAAAGGTATCCTGTCGTAG 58.658 45.833 0.93 0.00 42.49 3.51
1353 5176 5.014858 TCAAGAAAGGTATCCTGTCGTAGT 58.985 41.667 0.93 0.00 42.49 2.73
1354 5177 4.985538 AGAAAGGTATCCTGTCGTAGTG 57.014 45.455 0.93 0.00 42.49 2.74
1355 5178 3.700038 AGAAAGGTATCCTGTCGTAGTGG 59.300 47.826 0.93 0.00 42.49 4.00
1356 5179 2.822707 AGGTATCCTGTCGTAGTGGT 57.177 50.000 0.00 0.00 29.57 4.16
1357 5180 3.097342 AGGTATCCTGTCGTAGTGGTT 57.903 47.619 0.00 0.00 29.57 3.67
1358 5181 3.022406 AGGTATCCTGTCGTAGTGGTTC 58.978 50.000 0.00 0.00 29.57 3.62
1359 5182 3.022406 GGTATCCTGTCGTAGTGGTTCT 58.978 50.000 0.00 0.00 0.00 3.01
1360 5183 3.181489 GGTATCCTGTCGTAGTGGTTCTG 60.181 52.174 0.00 0.00 0.00 3.02
1361 5184 1.254026 TCCTGTCGTAGTGGTTCTGG 58.746 55.000 0.00 0.00 0.00 3.86
1362 5185 1.202964 TCCTGTCGTAGTGGTTCTGGA 60.203 52.381 0.00 0.00 0.00 3.86
1363 5186 1.067776 CCTGTCGTAGTGGTTCTGGAC 60.068 57.143 0.00 0.00 34.09 4.02
1364 5187 0.594602 TGTCGTAGTGGTTCTGGACG 59.405 55.000 0.00 0.00 35.30 4.79
1365 5188 0.109412 GTCGTAGTGGTTCTGGACGG 60.109 60.000 0.00 0.00 34.38 4.79
1366 5189 0.250858 TCGTAGTGGTTCTGGACGGA 60.251 55.000 0.00 0.00 34.38 4.69
1367 5190 0.109412 CGTAGTGGTTCTGGACGGAC 60.109 60.000 0.00 0.00 0.00 4.79
1368 5191 0.245813 GTAGTGGTTCTGGACGGACC 59.754 60.000 0.00 0.00 39.54 4.46
1369 5192 0.113776 TAGTGGTTCTGGACGGACCT 59.886 55.000 0.00 0.00 39.86 3.85
1370 5193 0.113776 AGTGGTTCTGGACGGACCTA 59.886 55.000 0.00 0.00 39.86 3.08
1371 5194 0.971386 GTGGTTCTGGACGGACCTAA 59.029 55.000 0.00 0.00 39.86 2.69
1372 5195 1.553704 GTGGTTCTGGACGGACCTAAT 59.446 52.381 0.00 0.00 39.86 1.73
1373 5196 2.762327 GTGGTTCTGGACGGACCTAATA 59.238 50.000 0.00 0.00 39.86 0.98
1374 5197 3.196254 GTGGTTCTGGACGGACCTAATAA 59.804 47.826 0.00 0.00 39.86 1.40
1375 5198 4.035112 TGGTTCTGGACGGACCTAATAAT 58.965 43.478 0.00 0.00 39.86 1.28
1376 5199 4.141801 TGGTTCTGGACGGACCTAATAATG 60.142 45.833 0.00 0.00 39.86 1.90
1377 5200 4.141779 GGTTCTGGACGGACCTAATAATGT 60.142 45.833 0.00 0.00 39.86 2.71
1378 5201 5.425630 GTTCTGGACGGACCTAATAATGTT 58.574 41.667 0.00 0.00 39.86 2.71
1379 5202 5.687166 TCTGGACGGACCTAATAATGTTT 57.313 39.130 0.00 0.00 39.86 2.83
1380 5203 6.057321 TCTGGACGGACCTAATAATGTTTT 57.943 37.500 0.00 0.00 39.86 2.43
1381 5204 7.185318 TCTGGACGGACCTAATAATGTTTTA 57.815 36.000 0.00 0.00 39.86 1.52
1382 5205 7.622713 TCTGGACGGACCTAATAATGTTTTAA 58.377 34.615 0.00 0.00 39.86 1.52
1383 5206 7.767198 TCTGGACGGACCTAATAATGTTTTAAG 59.233 37.037 0.00 0.00 39.86 1.85
1384 5207 7.396418 TGGACGGACCTAATAATGTTTTAAGT 58.604 34.615 0.00 0.00 39.86 2.24
1385 5208 7.334921 TGGACGGACCTAATAATGTTTTAAGTG 59.665 37.037 0.00 0.00 39.86 3.16
1386 5209 7.550196 GGACGGACCTAATAATGTTTTAAGTGA 59.450 37.037 0.00 0.00 35.41 3.41
1387 5210 9.106070 GACGGACCTAATAATGTTTTAAGTGAT 57.894 33.333 0.00 0.00 0.00 3.06
1388 5211 9.106070 ACGGACCTAATAATGTTTTAAGTGATC 57.894 33.333 0.00 0.00 0.00 2.92
1389 5212 8.273557 CGGACCTAATAATGTTTTAAGTGATCG 58.726 37.037 0.00 0.00 0.00 3.69
1390 5213 9.106070 GGACCTAATAATGTTTTAAGTGATCGT 57.894 33.333 0.00 0.00 0.00 3.73
1391 5214 9.916397 GACCTAATAATGTTTTAAGTGATCGTG 57.084 33.333 0.00 0.00 0.00 4.35
1392 5215 8.889717 ACCTAATAATGTTTTAAGTGATCGTGG 58.110 33.333 0.00 0.00 0.00 4.94
1393 5216 8.342634 CCTAATAATGTTTTAAGTGATCGTGGG 58.657 37.037 0.00 0.00 0.00 4.61
1394 5217 7.696992 AATAATGTTTTAAGTGATCGTGGGT 57.303 32.000 0.00 0.00 0.00 4.51
1395 5218 7.696992 ATAATGTTTTAAGTGATCGTGGGTT 57.303 32.000 0.00 0.00 0.00 4.11
1396 5219 5.622770 ATGTTTTAAGTGATCGTGGGTTC 57.377 39.130 0.00 0.00 0.00 3.62
1397 5220 3.495377 TGTTTTAAGTGATCGTGGGTTCG 59.505 43.478 0.00 0.00 0.00 3.95
1398 5221 3.663995 TTTAAGTGATCGTGGGTTCGA 57.336 42.857 0.00 0.00 43.86 3.71
1399 5222 3.663995 TTAAGTGATCGTGGGTTCGAA 57.336 42.857 0.00 0.00 42.99 3.71
1400 5223 2.762535 AAGTGATCGTGGGTTCGAAT 57.237 45.000 0.00 0.00 42.99 3.34
1401 5224 2.295253 AGTGATCGTGGGTTCGAATC 57.705 50.000 0.00 0.00 42.99 2.52
1402 5225 1.134788 AGTGATCGTGGGTTCGAATCC 60.135 52.381 21.05 21.05 42.99 3.01
1403 5226 0.177141 TGATCGTGGGTTCGAATCCC 59.823 55.000 24.55 23.01 42.99 3.85
1408 5231 4.542075 GGGTTCGAATCCCAGCTC 57.458 61.111 17.16 0.00 44.05 4.09
1409 5232 1.521681 GGGTTCGAATCCCAGCTCG 60.522 63.158 17.16 0.00 44.05 5.03
1410 5233 1.218316 GGTTCGAATCCCAGCTCGT 59.782 57.895 0.00 0.00 36.46 4.18
1411 5234 1.084370 GGTTCGAATCCCAGCTCGTG 61.084 60.000 0.00 0.00 36.46 4.35
1412 5235 1.447838 TTCGAATCCCAGCTCGTGC 60.448 57.895 0.07 0.07 36.46 5.34
1413 5236 2.852495 TTCGAATCCCAGCTCGTGCC 62.852 60.000 5.73 0.00 40.80 5.01
1414 5237 2.268920 GAATCCCAGCTCGTGCCA 59.731 61.111 5.73 0.00 40.80 4.92
1415 5238 1.153086 GAATCCCAGCTCGTGCCAT 60.153 57.895 5.73 0.00 40.80 4.40
1416 5239 1.153086 AATCCCAGCTCGTGCCATC 60.153 57.895 5.73 0.00 40.80 3.51
1417 5240 2.615227 AATCCCAGCTCGTGCCATCC 62.615 60.000 5.73 0.00 40.80 3.51
1418 5241 3.790437 CCCAGCTCGTGCCATCCT 61.790 66.667 5.73 0.00 40.80 3.24
1419 5242 2.270205 CCAGCTCGTGCCATCCTT 59.730 61.111 5.73 0.00 40.80 3.36
1420 5243 2.110967 CCAGCTCGTGCCATCCTTG 61.111 63.158 5.73 0.00 40.80 3.61
1421 5244 1.376424 CAGCTCGTGCCATCCTTGT 60.376 57.895 5.73 0.00 40.80 3.16
1422 5245 0.957395 CAGCTCGTGCCATCCTTGTT 60.957 55.000 5.73 0.00 40.80 2.83
1423 5246 0.674895 AGCTCGTGCCATCCTTGTTC 60.675 55.000 5.73 0.00 40.80 3.18
1424 5247 1.970917 GCTCGTGCCATCCTTGTTCG 61.971 60.000 0.00 0.00 0.00 3.95
1425 5248 1.970917 CTCGTGCCATCCTTGTTCGC 61.971 60.000 0.00 0.00 0.00 4.70
1426 5249 2.034879 CGTGCCATCCTTGTTCGCT 61.035 57.895 0.00 0.00 0.00 4.93
1427 5250 0.739462 CGTGCCATCCTTGTTCGCTA 60.739 55.000 0.00 0.00 0.00 4.26
1428 5251 1.668419 GTGCCATCCTTGTTCGCTAT 58.332 50.000 0.00 0.00 0.00 2.97
1429 5252 2.017049 GTGCCATCCTTGTTCGCTATT 58.983 47.619 0.00 0.00 0.00 1.73
1430 5253 2.423538 GTGCCATCCTTGTTCGCTATTT 59.576 45.455 0.00 0.00 0.00 1.40
1431 5254 3.088532 TGCCATCCTTGTTCGCTATTTT 58.911 40.909 0.00 0.00 0.00 1.82
1432 5255 3.509575 TGCCATCCTTGTTCGCTATTTTT 59.490 39.130 0.00 0.00 0.00 1.94
1433 5256 3.859386 GCCATCCTTGTTCGCTATTTTTG 59.141 43.478 0.00 0.00 0.00 2.44
1434 5257 4.380444 GCCATCCTTGTTCGCTATTTTTGA 60.380 41.667 0.00 0.00 0.00 2.69
1435 5258 5.679638 GCCATCCTTGTTCGCTATTTTTGAT 60.680 40.000 0.00 0.00 0.00 2.57
1436 5259 5.973565 CCATCCTTGTTCGCTATTTTTGATC 59.026 40.000 0.00 0.00 0.00 2.92
1437 5260 5.216566 TCCTTGTTCGCTATTTTTGATCG 57.783 39.130 0.00 0.00 0.00 3.69
1438 5261 3.786048 CCTTGTTCGCTATTTTTGATCGC 59.214 43.478 0.00 0.00 0.00 4.58
1439 5262 4.402583 CTTGTTCGCTATTTTTGATCGCA 58.597 39.130 0.00 0.00 0.00 5.10
1440 5263 4.614555 TGTTCGCTATTTTTGATCGCAT 57.385 36.364 0.00 0.00 0.00 4.73
1441 5264 4.341935 TGTTCGCTATTTTTGATCGCATG 58.658 39.130 0.00 0.00 0.00 4.06
1442 5265 2.985751 TCGCTATTTTTGATCGCATGC 58.014 42.857 7.91 7.91 0.00 4.06
1443 5266 2.354199 TCGCTATTTTTGATCGCATGCA 59.646 40.909 19.57 5.34 0.00 3.96
1444 5267 3.107407 CGCTATTTTTGATCGCATGCAA 58.893 40.909 19.57 0.00 0.00 4.08
1445 5268 3.732219 CGCTATTTTTGATCGCATGCAAT 59.268 39.130 19.57 4.07 0.00 3.56
1447 5270 4.084745 GCTATTTTTGATCGCATGCAATGG 60.085 41.667 19.57 10.63 46.86 3.16
1454 5277 4.211502 GCATGCAATGGGCCGTCC 62.212 66.667 14.21 0.00 46.86 4.79
1464 5287 2.669240 GGCCGTCCCAAGTAAGCT 59.331 61.111 0.00 0.00 0.00 3.74
1465 5288 1.745489 GGCCGTCCCAAGTAAGCTG 60.745 63.158 0.00 0.00 0.00 4.24
1466 5289 2.399356 GCCGTCCCAAGTAAGCTGC 61.399 63.158 0.00 0.00 0.00 5.25
1467 5290 1.745489 CCGTCCCAAGTAAGCTGCC 60.745 63.158 0.00 0.00 0.00 4.85
1468 5291 1.745489 CGTCCCAAGTAAGCTGCCC 60.745 63.158 0.00 0.00 0.00 5.36
1469 5292 1.685820 GTCCCAAGTAAGCTGCCCT 59.314 57.895 0.00 0.00 0.00 5.19
1470 5293 0.909623 GTCCCAAGTAAGCTGCCCTA 59.090 55.000 0.00 0.00 0.00 3.53
1471 5294 0.909623 TCCCAAGTAAGCTGCCCTAC 59.090 55.000 0.00 0.00 0.00 3.18
1472 5295 0.912486 CCCAAGTAAGCTGCCCTACT 59.088 55.000 6.27 6.27 0.00 2.57
1473 5296 1.282157 CCCAAGTAAGCTGCCCTACTT 59.718 52.381 15.33 15.33 33.52 2.24
1474 5297 2.290960 CCCAAGTAAGCTGCCCTACTTT 60.291 50.000 17.44 0.00 31.15 2.66
1475 5298 3.421844 CCAAGTAAGCTGCCCTACTTTT 58.578 45.455 17.44 1.51 31.15 2.27
1476 5299 3.440522 CCAAGTAAGCTGCCCTACTTTTC 59.559 47.826 17.44 0.00 31.15 2.29
1477 5300 4.327680 CAAGTAAGCTGCCCTACTTTTCT 58.672 43.478 17.44 0.65 31.15 2.52
1478 5301 5.488341 CAAGTAAGCTGCCCTACTTTTCTA 58.512 41.667 17.44 0.00 31.15 2.10
1479 5302 5.087391 AGTAAGCTGCCCTACTTTTCTAC 57.913 43.478 6.27 0.00 0.00 2.59
1480 5303 4.530946 AGTAAGCTGCCCTACTTTTCTACA 59.469 41.667 6.27 0.00 0.00 2.74
1481 5304 4.367039 AAGCTGCCCTACTTTTCTACAA 57.633 40.909 0.00 0.00 0.00 2.41
1482 5305 4.367039 AGCTGCCCTACTTTTCTACAAA 57.633 40.909 0.00 0.00 0.00 2.83
1483 5306 4.725490 AGCTGCCCTACTTTTCTACAAAA 58.275 39.130 0.00 0.00 0.00 2.44
1484 5307 5.137551 AGCTGCCCTACTTTTCTACAAAAA 58.862 37.500 0.00 0.00 30.90 1.94
1485 5308 5.775195 AGCTGCCCTACTTTTCTACAAAAAT 59.225 36.000 0.00 0.00 30.90 1.82
1486 5309 5.863935 GCTGCCCTACTTTTCTACAAAAATG 59.136 40.000 0.00 0.00 30.90 2.32
1487 5310 6.339587 TGCCCTACTTTTCTACAAAAATGG 57.660 37.500 0.00 0.00 30.90 3.16
1488 5311 5.168569 GCCCTACTTTTCTACAAAAATGGC 58.831 41.667 0.00 0.00 30.90 4.40
1489 5312 5.720202 CCCTACTTTTCTACAAAAATGGCC 58.280 41.667 0.00 0.00 30.90 5.36
1490 5313 5.399013 CCTACTTTTCTACAAAAATGGCCG 58.601 41.667 0.00 0.00 30.90 6.13
1491 5314 4.929819 ACTTTTCTACAAAAATGGCCGT 57.070 36.364 0.00 0.00 30.90 5.68
1492 5315 4.866921 ACTTTTCTACAAAAATGGCCGTC 58.133 39.130 0.00 0.00 30.90 4.79
1493 5316 3.926821 TTTCTACAAAAATGGCCGTCC 57.073 42.857 0.00 0.00 0.00 4.79
1494 5317 1.828979 TCTACAAAAATGGCCGTCCC 58.171 50.000 0.00 0.00 0.00 4.46
1502 5325 2.349755 TGGCCGTCCCAAGTAAGC 59.650 61.111 0.00 0.00 41.82 3.09
1503 5326 2.221299 TGGCCGTCCCAAGTAAGCT 61.221 57.895 0.00 0.00 41.82 3.74
1504 5327 1.745489 GGCCGTCCCAAGTAAGCTG 60.745 63.158 0.00 0.00 0.00 4.24
1505 5328 2.399356 GCCGTCCCAAGTAAGCTGC 61.399 63.158 0.00 0.00 0.00 5.25
1506 5329 1.745489 CCGTCCCAAGTAAGCTGCC 60.745 63.158 0.00 0.00 0.00 4.85
1507 5330 1.745489 CGTCCCAAGTAAGCTGCCC 60.745 63.158 0.00 0.00 0.00 5.36
1508 5331 1.685820 GTCCCAAGTAAGCTGCCCT 59.314 57.895 0.00 0.00 0.00 5.19
1509 5332 0.909623 GTCCCAAGTAAGCTGCCCTA 59.090 55.000 0.00 0.00 0.00 3.53
1510 5333 0.909623 TCCCAAGTAAGCTGCCCTAC 59.090 55.000 0.00 0.00 0.00 3.18
1511 5334 0.912486 CCCAAGTAAGCTGCCCTACT 59.088 55.000 6.27 6.27 0.00 2.57
1512 5335 1.282157 CCCAAGTAAGCTGCCCTACTT 59.718 52.381 15.33 15.33 33.52 2.24
1513 5336 2.290960 CCCAAGTAAGCTGCCCTACTTT 60.291 50.000 17.44 0.00 31.15 2.66
1514 5337 3.421844 CCAAGTAAGCTGCCCTACTTTT 58.578 45.455 17.44 1.51 31.15 2.27
1515 5338 3.440522 CCAAGTAAGCTGCCCTACTTTTC 59.559 47.826 17.44 0.00 31.15 2.29
1516 5339 4.327680 CAAGTAAGCTGCCCTACTTTTCT 58.672 43.478 17.44 0.65 31.15 2.52
1517 5340 5.488341 CAAGTAAGCTGCCCTACTTTTCTA 58.512 41.667 17.44 0.00 31.15 2.10
1518 5341 5.087391 AGTAAGCTGCCCTACTTTTCTAC 57.913 43.478 6.27 0.00 0.00 2.59
1519 5342 4.530946 AGTAAGCTGCCCTACTTTTCTACA 59.469 41.667 6.27 0.00 0.00 2.74
1520 5343 4.367039 AAGCTGCCCTACTTTTCTACAA 57.633 40.909 0.00 0.00 0.00 2.41
1521 5344 4.367039 AGCTGCCCTACTTTTCTACAAA 57.633 40.909 0.00 0.00 0.00 2.83
1522 5345 4.725490 AGCTGCCCTACTTTTCTACAAAA 58.275 39.130 0.00 0.00 0.00 2.44
1523 5346 5.137551 AGCTGCCCTACTTTTCTACAAAAA 58.862 37.500 0.00 0.00 30.90 1.94
1524 5347 5.775195 AGCTGCCCTACTTTTCTACAAAAAT 59.225 36.000 0.00 0.00 30.90 1.82
1525 5348 6.946009 AGCTGCCCTACTTTTCTACAAAAATA 59.054 34.615 0.00 0.00 30.90 1.40
1526 5349 7.121315 AGCTGCCCTACTTTTCTACAAAAATAG 59.879 37.037 0.00 0.00 33.09 1.73
1527 5350 7.120726 GCTGCCCTACTTTTCTACAAAAATAGA 59.879 37.037 0.00 0.00 34.55 1.98
1528 5351 9.178758 CTGCCCTACTTTTCTACAAAAATAGAT 57.821 33.333 0.00 0.00 34.55 1.98
1550 5373 7.092716 AGATACAAAATGTGAAAAGTCCATGC 58.907 34.615 0.00 0.00 0.00 4.06
1551 5374 5.280654 ACAAAATGTGAAAAGTCCATGCT 57.719 34.783 0.00 0.00 0.00 3.79
1552 5375 6.403866 ACAAAATGTGAAAAGTCCATGCTA 57.596 33.333 0.00 0.00 0.00 3.49
1553 5376 6.215845 ACAAAATGTGAAAAGTCCATGCTAC 58.784 36.000 0.00 0.00 0.00 3.58
1554 5377 5.391312 AAATGTGAAAAGTCCATGCTACC 57.609 39.130 0.00 0.00 0.00 3.18
1555 5378 2.790433 TGTGAAAAGTCCATGCTACCC 58.210 47.619 0.00 0.00 0.00 3.69
1556 5379 2.375174 TGTGAAAAGTCCATGCTACCCT 59.625 45.455 0.00 0.00 0.00 4.34
1557 5380 3.181434 TGTGAAAAGTCCATGCTACCCTT 60.181 43.478 0.00 0.00 0.00 3.95
1558 5381 3.826729 GTGAAAAGTCCATGCTACCCTTT 59.173 43.478 0.00 0.00 0.00 3.11
1559 5382 5.007682 GTGAAAAGTCCATGCTACCCTTTA 58.992 41.667 0.00 0.00 0.00 1.85
1560 5383 5.652452 GTGAAAAGTCCATGCTACCCTTTAT 59.348 40.000 0.00 0.00 0.00 1.40
1561 5384 6.826741 GTGAAAAGTCCATGCTACCCTTTATA 59.173 38.462 0.00 0.00 0.00 0.98
1562 5385 6.826741 TGAAAAGTCCATGCTACCCTTTATAC 59.173 38.462 0.00 0.00 0.00 1.47
1563 5386 5.968676 AAGTCCATGCTACCCTTTATACA 57.031 39.130 0.00 0.00 0.00 2.29
1564 5387 6.515512 AAGTCCATGCTACCCTTTATACAT 57.484 37.500 0.00 0.00 0.00 2.29
1565 5388 7.626999 AAGTCCATGCTACCCTTTATACATA 57.373 36.000 0.00 0.00 0.00 2.29
1566 5389 7.814693 AGTCCATGCTACCCTTTATACATAT 57.185 36.000 0.00 0.00 0.00 1.78
1567 5390 8.219660 AGTCCATGCTACCCTTTATACATATT 57.780 34.615 0.00 0.00 0.00 1.28
1568 5391 8.103305 AGTCCATGCTACCCTTTATACATATTG 58.897 37.037 0.00 0.00 0.00 1.90
1569 5392 6.884295 TCCATGCTACCCTTTATACATATTGC 59.116 38.462 0.00 0.00 0.00 3.56
1570 5393 6.183360 CCATGCTACCCTTTATACATATTGCG 60.183 42.308 0.00 0.00 0.00 4.85
1571 5394 6.104146 TGCTACCCTTTATACATATTGCGA 57.896 37.500 0.00 0.00 0.00 5.10
1572 5395 6.163476 TGCTACCCTTTATACATATTGCGAG 58.837 40.000 0.00 0.00 0.00 5.03
1573 5396 5.581085 GCTACCCTTTATACATATTGCGAGG 59.419 44.000 0.00 0.00 0.00 4.63
1574 5397 4.906618 ACCCTTTATACATATTGCGAGGG 58.093 43.478 3.64 3.64 46.37 4.30
1575 5398 4.261801 CCCTTTATACATATTGCGAGGGG 58.738 47.826 0.00 0.00 39.11 4.79
1576 5399 4.261801 CCTTTATACATATTGCGAGGGGG 58.738 47.826 0.00 0.00 0.00 5.40
1577 5400 4.263331 CCTTTATACATATTGCGAGGGGGT 60.263 45.833 0.00 0.00 0.00 4.95
1578 5401 4.986054 TTATACATATTGCGAGGGGGTT 57.014 40.909 0.00 0.00 0.00 4.11
1579 5402 2.631160 TACATATTGCGAGGGGGTTG 57.369 50.000 0.00 0.00 0.00 3.77
1580 5403 0.623723 ACATATTGCGAGGGGGTTGT 59.376 50.000 0.00 0.00 0.00 3.32
1581 5404 1.841277 ACATATTGCGAGGGGGTTGTA 59.159 47.619 0.00 0.00 0.00 2.41
1582 5405 2.218603 CATATTGCGAGGGGGTTGTAC 58.781 52.381 0.00 0.00 0.00 2.90
1583 5406 0.542805 TATTGCGAGGGGGTTGTACC 59.457 55.000 0.00 0.00 37.60 3.34
1584 5407 1.493854 ATTGCGAGGGGGTTGTACCA 61.494 55.000 0.00 0.00 41.02 3.25
1585 5408 1.706995 TTGCGAGGGGGTTGTACCAA 61.707 55.000 0.00 0.00 41.02 3.67
1586 5409 1.073548 GCGAGGGGGTTGTACCAAA 59.926 57.895 0.00 0.00 41.02 3.28
1587 5410 0.958876 GCGAGGGGGTTGTACCAAAG 60.959 60.000 0.00 0.00 41.02 2.77
1588 5411 0.958876 CGAGGGGGTTGTACCAAAGC 60.959 60.000 0.00 0.00 41.02 3.51
1589 5412 0.958876 GAGGGGGTTGTACCAAAGCG 60.959 60.000 0.00 0.00 41.02 4.68
1590 5413 1.974875 GGGGGTTGTACCAAAGCGG 60.975 63.158 0.00 0.00 41.02 5.52
1591 5414 1.974875 GGGGTTGTACCAAAGCGGG 60.975 63.158 0.00 0.00 41.02 6.13
1592 5415 1.073548 GGGTTGTACCAAAGCGGGA 59.926 57.895 0.00 0.00 41.02 5.14
1781 5604 3.036084 CAACGAGTTGCGAGCGGT 61.036 61.111 2.84 0.00 44.57 5.68
1804 5627 2.746375 CGGGCAAGCCTACCCTCAT 61.746 63.158 11.40 0.00 44.63 2.90
1852 5696 0.107410 TTGACCACTGCCGTGAAAGT 60.107 50.000 10.15 0.00 43.97 2.66
1888 5732 2.354704 CGGAAGTAGGGCAAGTGAATGA 60.355 50.000 0.00 0.00 0.00 2.57
1896 5740 0.248377 GCAAGTGAATGATGCTCGCC 60.248 55.000 0.00 0.00 37.12 5.54
1900 5744 1.140452 AGTGAATGATGCTCGCCTCAT 59.860 47.619 4.19 4.19 33.76 2.90
1901 5745 1.263484 GTGAATGATGCTCGCCTCATG 59.737 52.381 9.83 0.00 32.93 3.07
1908 5752 1.005156 GCTCGCCTCATGGAGATCC 60.005 63.158 1.34 0.00 41.25 3.36
1936 5780 0.036732 TTGGACATGCTCACCTCCAC 59.963 55.000 0.16 0.00 32.33 4.02
1965 5809 2.359850 TGTCCATGGCGTCCAAGC 60.360 61.111 6.96 0.00 36.95 4.01
1966 5810 3.499737 GTCCATGGCGTCCAAGCG 61.500 66.667 6.96 0.00 36.95 4.68
1980 5824 1.697432 CCAAGCGGGAGGGTATTATCA 59.303 52.381 0.00 0.00 40.01 2.15
2050 5894 8.738645 ACTTACTCAAGAAGAACAATGTCTTT 57.261 30.769 0.00 0.00 37.98 2.52
2069 5913 1.438651 TCGGTGGATTTTGAGCGAAG 58.561 50.000 0.00 0.00 39.00 3.79
2092 5936 7.301068 AGAAGAAGCTTTTGATCATCTAACG 57.699 36.000 0.00 0.00 0.00 3.18
2094 5938 4.333926 AGAAGCTTTTGATCATCTAACGCC 59.666 41.667 0.00 0.00 29.57 5.68
2099 5943 3.786516 TTGATCATCTAACGCCACGTA 57.213 42.857 0.00 0.00 39.99 3.57
2101 5945 3.638484 TGATCATCTAACGCCACGTATG 58.362 45.455 0.00 0.00 39.99 2.39
2112 5957 2.078226 CACGTATGTGGAAGCACCG 58.922 57.895 7.22 0.00 42.59 4.94
2122 5997 3.007074 TGTGGAAGCACCGTTTACTATGA 59.993 43.478 0.00 0.00 42.61 2.15
2158 6033 2.671963 GTGGACTTGGGGCCGTTC 60.672 66.667 0.00 0.00 0.00 3.95
2176 6051 0.394216 TCTTATGCAGCGTGGCCATT 60.394 50.000 9.72 0.00 0.00 3.16
2194 6069 3.887110 CCATTCAATTGCCTATCTCAGCA 59.113 43.478 0.00 0.00 37.18 4.41
2200 6123 1.571955 TGCCTATCTCAGCAACCTCA 58.428 50.000 0.00 0.00 35.69 3.86
2225 6148 3.002791 TCCTTCTTGCAATAGACAAGCG 58.997 45.455 0.00 0.00 43.40 4.68
2248 6171 1.861575 GCGCCTATCTACAAACTGCTC 59.138 52.381 0.00 0.00 0.00 4.26
2277 6200 4.849329 GTCGCCGATCGCCGAAGT 62.849 66.667 23.43 0.00 41.76 3.01
2280 6203 1.874915 CGCCGATCGCCGAAGTTTA 60.875 57.895 13.96 0.00 41.76 2.01
2282 6205 0.804933 GCCGATCGCCGAAGTTTAGT 60.805 55.000 10.32 0.00 41.76 2.24
2283 6206 0.921347 CCGATCGCCGAAGTTTAGTG 59.079 55.000 10.32 0.00 41.76 2.74
2285 6208 1.355971 GATCGCCGAAGTTTAGTGCA 58.644 50.000 0.00 0.00 0.00 4.57
2286 6209 1.060698 GATCGCCGAAGTTTAGTGCAC 59.939 52.381 9.40 9.40 0.00 4.57
2287 6210 0.947180 TCGCCGAAGTTTAGTGCACC 60.947 55.000 14.63 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 5.172205 GGTCTATCAGTTCACAAACTCTCC 58.828 45.833 0.00 0.00 43.99 3.71
203 204 2.496871 CCCTTGCTATCAAAATGCCACA 59.503 45.455 0.00 0.00 0.00 4.17
251 252 6.155221 TCCATCCCTATTCTGCACATATACTC 59.845 42.308 0.00 0.00 0.00 2.59
360 361 0.320683 CCAGACGCCACATGAACTGA 60.321 55.000 0.00 0.00 0.00 3.41
375 376 2.040278 AGGCAAACTGTTATGAGCCAGA 59.960 45.455 20.62 0.00 44.34 3.86
600 601 6.149474 CCACTAGAATTCGTTTGTTCTCCATT 59.851 38.462 0.00 0.00 36.23 3.16
602 603 4.994852 CCACTAGAATTCGTTTGTTCTCCA 59.005 41.667 0.00 0.00 36.23 3.86
671 672 2.583472 GGGATGCTTTTGTCCCCTG 58.417 57.895 0.00 0.00 46.95 4.45
753 754 2.684881 GACAGATGTGCCTGTATTTGGG 59.315 50.000 0.00 0.00 46.45 4.12
758 4276 4.847198 TGATTTGACAGATGTGCCTGTAT 58.153 39.130 0.00 0.00 46.45 2.29
762 4280 3.079578 CACTGATTTGACAGATGTGCCT 58.920 45.455 0.00 0.00 40.63 4.75
778 4296 2.942752 GCTTCCTCCATTCATGCACTGA 60.943 50.000 0.00 0.00 0.00 3.41
952 4775 2.665603 GAGACAAGCCTCGGCCTT 59.334 61.111 0.00 0.00 43.17 4.35
1020 4843 1.002087 ACCAGAACCTGACAATCCGAC 59.998 52.381 0.00 0.00 32.44 4.79
1070 4893 5.410355 AAATAGCAAACCTTCATGTGCAT 57.590 34.783 6.51 0.00 39.50 3.96
1076 4899 8.829373 AATCTCCTTAAATAGCAAACCTTCAT 57.171 30.769 0.00 0.00 0.00 2.57
1319 5142 9.853177 AGGATACCTTTCTTGACCAATATAAAG 57.147 33.333 0.00 0.00 37.17 1.85
1320 5143 9.627123 CAGGATACCTTTCTTGACCAATATAAA 57.373 33.333 0.00 0.00 37.17 1.40
1322 5145 8.331931 ACAGGATACCTTTCTTGACCAATATA 57.668 34.615 0.00 0.00 37.17 0.86
1323 5146 7.213178 ACAGGATACCTTTCTTGACCAATAT 57.787 36.000 0.00 0.00 37.17 1.28
1324 5147 6.629515 CGACAGGATACCTTTCTTGACCAATA 60.630 42.308 0.00 0.00 28.89 1.90
1325 5148 5.501156 GACAGGATACCTTTCTTGACCAAT 58.499 41.667 0.00 0.00 28.57 3.16
1327 5150 3.056107 CGACAGGATACCTTTCTTGACCA 60.056 47.826 0.00 0.00 28.89 4.02
1328 5151 3.056035 ACGACAGGATACCTTTCTTGACC 60.056 47.826 0.00 0.00 28.89 4.02
1329 5152 4.189639 ACGACAGGATACCTTTCTTGAC 57.810 45.455 0.00 0.00 28.89 3.18
1330 5153 5.014858 ACTACGACAGGATACCTTTCTTGA 58.985 41.667 0.00 0.00 28.89 3.02
1331 5154 5.103000 CACTACGACAGGATACCTTTCTTG 58.897 45.833 0.00 0.00 28.89 3.02
1332 5155 4.159879 CCACTACGACAGGATACCTTTCTT 59.840 45.833 0.00 0.00 28.89 2.52
1333 5156 3.700038 CCACTACGACAGGATACCTTTCT 59.300 47.826 0.00 0.00 28.89 2.52
1334 5157 3.446516 ACCACTACGACAGGATACCTTTC 59.553 47.826 0.00 0.00 37.17 2.62
1335 5158 3.438183 ACCACTACGACAGGATACCTTT 58.562 45.455 0.00 0.00 37.17 3.11
1336 5159 3.097342 ACCACTACGACAGGATACCTT 57.903 47.619 0.00 0.00 37.17 3.50
1337 5160 2.822707 ACCACTACGACAGGATACCT 57.177 50.000 0.00 0.00 37.17 3.08
1338 5161 3.022406 AGAACCACTACGACAGGATACC 58.978 50.000 0.00 0.00 37.17 2.73
1339 5162 3.181489 CCAGAACCACTACGACAGGATAC 60.181 52.174 0.00 0.00 0.00 2.24
1340 5163 3.021695 CCAGAACCACTACGACAGGATA 58.978 50.000 0.00 0.00 0.00 2.59
1341 5164 1.825474 CCAGAACCACTACGACAGGAT 59.175 52.381 0.00 0.00 0.00 3.24
1342 5165 1.202964 TCCAGAACCACTACGACAGGA 60.203 52.381 0.00 0.00 0.00 3.86
1343 5166 1.067776 GTCCAGAACCACTACGACAGG 60.068 57.143 0.00 0.00 31.46 4.00
1344 5167 1.401148 CGTCCAGAACCACTACGACAG 60.401 57.143 0.00 0.00 33.88 3.51
1345 5168 0.594602 CGTCCAGAACCACTACGACA 59.405 55.000 0.00 0.00 33.88 4.35
1346 5169 0.109412 CCGTCCAGAACCACTACGAC 60.109 60.000 0.00 0.00 33.88 4.34
1347 5170 0.250858 TCCGTCCAGAACCACTACGA 60.251 55.000 0.00 0.00 33.88 3.43
1348 5171 0.109412 GTCCGTCCAGAACCACTACG 60.109 60.000 0.00 0.00 32.42 3.51
1349 5172 0.245813 GGTCCGTCCAGAACCACTAC 59.754 60.000 0.00 0.00 35.97 2.73
1350 5173 0.113776 AGGTCCGTCCAGAACCACTA 59.886 55.000 0.00 0.00 39.02 2.74
1351 5174 0.113776 TAGGTCCGTCCAGAACCACT 59.886 55.000 0.00 0.00 39.02 4.00
1352 5175 0.971386 TTAGGTCCGTCCAGAACCAC 59.029 55.000 0.00 0.00 39.02 4.16
1353 5176 1.946984 ATTAGGTCCGTCCAGAACCA 58.053 50.000 0.00 0.00 39.02 3.67
1354 5177 4.141779 ACATTATTAGGTCCGTCCAGAACC 60.142 45.833 0.00 0.00 39.02 3.62
1355 5178 5.019785 ACATTATTAGGTCCGTCCAGAAC 57.980 43.478 0.00 0.00 39.02 3.01
1356 5179 5.687166 AACATTATTAGGTCCGTCCAGAA 57.313 39.130 0.00 0.00 39.02 3.02
1357 5180 5.687166 AAACATTATTAGGTCCGTCCAGA 57.313 39.130 0.00 0.00 39.02 3.86
1358 5181 7.551617 ACTTAAAACATTATTAGGTCCGTCCAG 59.448 37.037 0.00 0.00 39.02 3.86
1359 5182 7.334921 CACTTAAAACATTATTAGGTCCGTCCA 59.665 37.037 0.00 0.00 39.02 4.02
1360 5183 7.550196 TCACTTAAAACATTATTAGGTCCGTCC 59.450 37.037 0.00 0.00 0.00 4.79
1361 5184 8.483307 TCACTTAAAACATTATTAGGTCCGTC 57.517 34.615 0.00 0.00 0.00 4.79
1362 5185 9.106070 GATCACTTAAAACATTATTAGGTCCGT 57.894 33.333 0.00 0.00 0.00 4.69
1363 5186 8.273557 CGATCACTTAAAACATTATTAGGTCCG 58.726 37.037 0.00 0.00 0.00 4.79
1364 5187 9.106070 ACGATCACTTAAAACATTATTAGGTCC 57.894 33.333 0.00 0.00 0.00 4.46
1365 5188 9.916397 CACGATCACTTAAAACATTATTAGGTC 57.084 33.333 0.00 0.00 0.00 3.85
1366 5189 8.889717 CCACGATCACTTAAAACATTATTAGGT 58.110 33.333 0.00 0.00 0.00 3.08
1367 5190 8.342634 CCCACGATCACTTAAAACATTATTAGG 58.657 37.037 0.00 0.00 0.00 2.69
1368 5191 8.889717 ACCCACGATCACTTAAAACATTATTAG 58.110 33.333 0.00 0.00 0.00 1.73
1369 5192 8.795842 ACCCACGATCACTTAAAACATTATTA 57.204 30.769 0.00 0.00 0.00 0.98
1370 5193 7.696992 ACCCACGATCACTTAAAACATTATT 57.303 32.000 0.00 0.00 0.00 1.40
1371 5194 7.413657 CGAACCCACGATCACTTAAAACATTAT 60.414 37.037 0.00 0.00 35.09 1.28
1372 5195 6.128499 CGAACCCACGATCACTTAAAACATTA 60.128 38.462 0.00 0.00 35.09 1.90
1373 5196 5.334569 CGAACCCACGATCACTTAAAACATT 60.335 40.000 0.00 0.00 35.09 2.71
1374 5197 4.153475 CGAACCCACGATCACTTAAAACAT 59.847 41.667 0.00 0.00 35.09 2.71
1375 5198 3.495377 CGAACCCACGATCACTTAAAACA 59.505 43.478 0.00 0.00 35.09 2.83
1376 5199 3.742369 TCGAACCCACGATCACTTAAAAC 59.258 43.478 0.00 0.00 37.37 2.43
1377 5200 3.992643 TCGAACCCACGATCACTTAAAA 58.007 40.909 0.00 0.00 37.37 1.52
1378 5201 3.663995 TCGAACCCACGATCACTTAAA 57.336 42.857 0.00 0.00 37.37 1.52
1379 5202 3.663995 TTCGAACCCACGATCACTTAA 57.336 42.857 0.00 0.00 41.82 1.85
1380 5203 3.429822 GGATTCGAACCCACGATCACTTA 60.430 47.826 2.75 0.00 41.82 2.24
1381 5204 2.618053 GATTCGAACCCACGATCACTT 58.382 47.619 0.00 0.00 41.82 3.16
1382 5205 1.134788 GGATTCGAACCCACGATCACT 60.135 52.381 2.75 0.00 41.82 3.41
1383 5206 1.287425 GGATTCGAACCCACGATCAC 58.713 55.000 2.75 0.00 41.82 3.06
1384 5207 0.177141 GGGATTCGAACCCACGATCA 59.823 55.000 23.09 0.00 46.05 2.92
1385 5208 2.987752 GGGATTCGAACCCACGATC 58.012 57.895 23.09 7.36 46.05 3.69
1391 5214 1.521681 CGAGCTGGGATTCGAACCC 60.522 63.158 21.92 21.92 46.87 4.11
1392 5215 1.084370 CACGAGCTGGGATTCGAACC 61.084 60.000 0.00 4.00 39.93 3.62
1393 5216 1.696832 GCACGAGCTGGGATTCGAAC 61.697 60.000 0.00 0.00 39.93 3.95
1394 5217 1.447838 GCACGAGCTGGGATTCGAA 60.448 57.895 0.00 0.00 39.93 3.71
1395 5218 2.184322 GCACGAGCTGGGATTCGA 59.816 61.111 0.00 0.00 39.93 3.71
1396 5219 2.892425 GGCACGAGCTGGGATTCG 60.892 66.667 4.48 0.00 41.70 3.34
1397 5220 1.153086 ATGGCACGAGCTGGGATTC 60.153 57.895 4.48 0.00 41.70 2.52
1398 5221 1.153086 GATGGCACGAGCTGGGATT 60.153 57.895 4.48 0.00 41.70 3.01
1399 5222 2.507944 GATGGCACGAGCTGGGAT 59.492 61.111 4.48 0.00 41.70 3.85
1400 5223 3.785859 GGATGGCACGAGCTGGGA 61.786 66.667 4.48 0.00 41.70 4.37
1401 5224 3.335356 AAGGATGGCACGAGCTGGG 62.335 63.158 4.48 0.00 41.70 4.45
1402 5225 2.110967 CAAGGATGGCACGAGCTGG 61.111 63.158 4.48 0.00 41.70 4.85
1403 5226 0.957395 AACAAGGATGGCACGAGCTG 60.957 55.000 4.48 0.00 41.70 4.24
1404 5227 0.674895 GAACAAGGATGGCACGAGCT 60.675 55.000 4.48 0.00 41.70 4.09
1405 5228 1.796796 GAACAAGGATGGCACGAGC 59.203 57.895 0.00 0.00 41.10 5.03
1406 5229 1.970917 GCGAACAAGGATGGCACGAG 61.971 60.000 0.00 0.00 0.00 4.18
1407 5230 2.032634 GCGAACAAGGATGGCACGA 61.033 57.895 0.00 0.00 0.00 4.35
1408 5231 0.739462 TAGCGAACAAGGATGGCACG 60.739 55.000 0.00 0.00 0.00 5.34
1409 5232 1.668419 ATAGCGAACAAGGATGGCAC 58.332 50.000 0.00 0.00 0.00 5.01
1410 5233 2.418368 AATAGCGAACAAGGATGGCA 57.582 45.000 0.00 0.00 0.00 4.92
1411 5234 3.782889 AAAATAGCGAACAAGGATGGC 57.217 42.857 0.00 0.00 0.00 4.40
1412 5235 5.309323 TCAAAAATAGCGAACAAGGATGG 57.691 39.130 0.00 0.00 0.00 3.51
1413 5236 5.678483 CGATCAAAAATAGCGAACAAGGATG 59.322 40.000 0.00 0.00 0.00 3.51
1414 5237 5.730568 GCGATCAAAAATAGCGAACAAGGAT 60.731 40.000 0.00 0.00 0.00 3.24
1415 5238 4.436852 GCGATCAAAAATAGCGAACAAGGA 60.437 41.667 0.00 0.00 0.00 3.36
1416 5239 3.786048 GCGATCAAAAATAGCGAACAAGG 59.214 43.478 0.00 0.00 0.00 3.61
1417 5240 4.402583 TGCGATCAAAAATAGCGAACAAG 58.597 39.130 0.00 0.00 0.00 3.16
1418 5241 4.411993 TGCGATCAAAAATAGCGAACAA 57.588 36.364 0.00 0.00 0.00 2.83
1419 5242 4.341935 CATGCGATCAAAAATAGCGAACA 58.658 39.130 0.00 0.00 0.00 3.18
1420 5243 3.178423 GCATGCGATCAAAAATAGCGAAC 59.822 43.478 0.00 0.00 0.00 3.95
1421 5244 3.181502 TGCATGCGATCAAAAATAGCGAA 60.182 39.130 14.09 0.00 0.00 4.70
1422 5245 2.354199 TGCATGCGATCAAAAATAGCGA 59.646 40.909 14.09 0.00 0.00 4.93
1423 5246 2.718663 TGCATGCGATCAAAAATAGCG 58.281 42.857 14.09 0.00 0.00 4.26
1424 5247 4.084745 CCATTGCATGCGATCAAAAATAGC 60.085 41.667 17.93 0.00 0.00 2.97
1425 5248 4.446385 CCCATTGCATGCGATCAAAAATAG 59.554 41.667 17.93 4.20 0.00 1.73
1426 5249 4.370049 CCCATTGCATGCGATCAAAAATA 58.630 39.130 17.93 0.00 0.00 1.40
1427 5250 3.199677 CCCATTGCATGCGATCAAAAAT 58.800 40.909 17.93 4.39 0.00 1.82
1428 5251 2.619147 CCCATTGCATGCGATCAAAAA 58.381 42.857 17.93 1.86 0.00 1.94
1429 5252 1.739707 GCCCATTGCATGCGATCAAAA 60.740 47.619 17.93 2.66 40.77 2.44
1430 5253 0.179105 GCCCATTGCATGCGATCAAA 60.179 50.000 17.93 3.45 40.77 2.69
1431 5254 1.438399 GCCCATTGCATGCGATCAA 59.562 52.632 17.93 3.87 40.77 2.57
1432 5255 2.491897 GGCCCATTGCATGCGATCA 61.492 57.895 17.93 0.00 43.89 2.92
1433 5256 2.337532 GGCCCATTGCATGCGATC 59.662 61.111 17.93 6.99 43.89 3.69
1434 5257 3.598715 CGGCCCATTGCATGCGAT 61.599 61.111 15.05 15.05 43.89 4.58
1436 5259 4.557605 GACGGCCCATTGCATGCG 62.558 66.667 14.09 0.00 43.89 4.73
1437 5260 4.211502 GGACGGCCCATTGCATGC 62.212 66.667 11.82 11.82 43.89 4.06
1447 5270 1.745489 CAGCTTACTTGGGACGGCC 60.745 63.158 0.00 0.00 0.00 6.13
1448 5271 2.399356 GCAGCTTACTTGGGACGGC 61.399 63.158 0.00 0.00 0.00 5.68
1449 5272 1.745489 GGCAGCTTACTTGGGACGG 60.745 63.158 0.00 0.00 0.00 4.79
1450 5273 1.745489 GGGCAGCTTACTTGGGACG 60.745 63.158 0.00 0.00 0.00 4.79
1451 5274 0.909623 TAGGGCAGCTTACTTGGGAC 59.090 55.000 0.00 0.00 0.00 4.46
1452 5275 0.909623 GTAGGGCAGCTTACTTGGGA 59.090 55.000 0.00 0.00 0.00 4.37
1453 5276 0.912486 AGTAGGGCAGCTTACTTGGG 59.088 55.000 4.80 0.00 0.00 4.12
1454 5277 2.789409 AAGTAGGGCAGCTTACTTGG 57.211 50.000 16.97 0.00 38.37 3.61
1455 5278 4.327680 AGAAAAGTAGGGCAGCTTACTTG 58.672 43.478 17.88 0.00 39.40 3.16
1456 5279 4.642466 AGAAAAGTAGGGCAGCTTACTT 57.358 40.909 13.75 13.75 40.77 2.24
1457 5280 4.530946 TGTAGAAAAGTAGGGCAGCTTACT 59.469 41.667 4.80 4.80 0.00 2.24
1458 5281 4.828829 TGTAGAAAAGTAGGGCAGCTTAC 58.171 43.478 0.00 0.00 0.00 2.34
1459 5282 5.492855 TTGTAGAAAAGTAGGGCAGCTTA 57.507 39.130 0.00 0.00 0.00 3.09
1460 5283 4.367039 TTGTAGAAAAGTAGGGCAGCTT 57.633 40.909 0.00 0.00 0.00 3.74
1461 5284 4.367039 TTTGTAGAAAAGTAGGGCAGCT 57.633 40.909 0.00 0.00 0.00 4.24
1462 5285 5.447624 TTTTTGTAGAAAAGTAGGGCAGC 57.552 39.130 0.00 0.00 32.62 5.25
1463 5286 6.389906 CCATTTTTGTAGAAAAGTAGGGCAG 58.610 40.000 0.00 0.00 32.62 4.85
1464 5287 5.279256 GCCATTTTTGTAGAAAAGTAGGGCA 60.279 40.000 16.26 0.00 36.10 5.36
1465 5288 5.168569 GCCATTTTTGTAGAAAAGTAGGGC 58.831 41.667 8.97 8.97 32.62 5.19
1466 5289 5.621329 CGGCCATTTTTGTAGAAAAGTAGGG 60.621 44.000 2.24 5.73 32.62 3.53
1467 5290 5.048294 ACGGCCATTTTTGTAGAAAAGTAGG 60.048 40.000 2.24 3.69 32.62 3.18
1468 5291 6.009115 ACGGCCATTTTTGTAGAAAAGTAG 57.991 37.500 2.24 0.00 32.62 2.57
1469 5292 5.048573 GGACGGCCATTTTTGTAGAAAAGTA 60.049 40.000 0.00 0.00 32.62 2.24
1470 5293 4.261867 GGACGGCCATTTTTGTAGAAAAGT 60.262 41.667 0.00 0.00 32.62 2.66
1471 5294 4.234574 GGACGGCCATTTTTGTAGAAAAG 58.765 43.478 0.00 0.00 32.62 2.27
1472 5295 3.006003 GGGACGGCCATTTTTGTAGAAAA 59.994 43.478 11.00 0.00 35.15 2.29
1473 5296 2.559231 GGGACGGCCATTTTTGTAGAAA 59.441 45.455 11.00 0.00 35.15 2.52
1474 5297 2.164338 GGGACGGCCATTTTTGTAGAA 58.836 47.619 11.00 0.00 35.15 2.10
1475 5298 1.074084 TGGGACGGCCATTTTTGTAGA 59.926 47.619 11.00 0.00 35.15 2.59
1476 5299 1.540267 TGGGACGGCCATTTTTGTAG 58.460 50.000 11.00 0.00 35.15 2.74
1477 5300 1.889829 CTTGGGACGGCCATTTTTGTA 59.110 47.619 11.00 0.00 35.15 2.41
1478 5301 0.678950 CTTGGGACGGCCATTTTTGT 59.321 50.000 11.00 0.00 35.15 2.83
1479 5302 0.678950 ACTTGGGACGGCCATTTTTG 59.321 50.000 11.00 0.00 35.15 2.44
1480 5303 2.296073 TACTTGGGACGGCCATTTTT 57.704 45.000 11.00 0.00 35.15 1.94
1481 5304 2.167662 CTTACTTGGGACGGCCATTTT 58.832 47.619 11.00 0.00 35.15 1.82
1482 5305 1.834188 CTTACTTGGGACGGCCATTT 58.166 50.000 11.00 0.00 35.15 2.32
1483 5306 0.679960 GCTTACTTGGGACGGCCATT 60.680 55.000 11.00 0.00 35.15 3.16
1484 5307 1.077716 GCTTACTTGGGACGGCCAT 60.078 57.895 11.00 0.00 35.15 4.40
1485 5308 2.221299 AGCTTACTTGGGACGGCCA 61.221 57.895 11.00 0.00 35.15 5.36
1486 5309 1.745489 CAGCTTACTTGGGACGGCC 60.745 63.158 0.00 0.00 0.00 6.13
1487 5310 2.399356 GCAGCTTACTTGGGACGGC 61.399 63.158 0.00 0.00 0.00 5.68
1488 5311 1.745489 GGCAGCTTACTTGGGACGG 60.745 63.158 0.00 0.00 0.00 4.79
1489 5312 1.745489 GGGCAGCTTACTTGGGACG 60.745 63.158 0.00 0.00 0.00 4.79
1490 5313 0.909623 TAGGGCAGCTTACTTGGGAC 59.090 55.000 0.00 0.00 0.00 4.46
1491 5314 0.909623 GTAGGGCAGCTTACTTGGGA 59.090 55.000 0.00 0.00 0.00 4.37
1492 5315 0.912486 AGTAGGGCAGCTTACTTGGG 59.088 55.000 4.80 0.00 0.00 4.12
1493 5316 2.789409 AAGTAGGGCAGCTTACTTGG 57.211 50.000 16.97 0.00 38.37 3.61
1494 5317 4.327680 AGAAAAGTAGGGCAGCTTACTTG 58.672 43.478 17.88 0.00 39.40 3.16
1495 5318 4.642466 AGAAAAGTAGGGCAGCTTACTT 57.358 40.909 13.75 13.75 40.77 2.24
1496 5319 4.530946 TGTAGAAAAGTAGGGCAGCTTACT 59.469 41.667 4.80 4.80 0.00 2.24
1497 5320 4.828829 TGTAGAAAAGTAGGGCAGCTTAC 58.171 43.478 0.00 0.00 0.00 2.34
1498 5321 5.492855 TTGTAGAAAAGTAGGGCAGCTTA 57.507 39.130 0.00 0.00 0.00 3.09
1499 5322 4.367039 TTGTAGAAAAGTAGGGCAGCTT 57.633 40.909 0.00 0.00 0.00 3.74
1500 5323 4.367039 TTTGTAGAAAAGTAGGGCAGCT 57.633 40.909 0.00 0.00 0.00 4.24
1501 5324 5.447624 TTTTTGTAGAAAAGTAGGGCAGC 57.552 39.130 0.00 0.00 32.62 5.25
1502 5325 8.561738 TCTATTTTTGTAGAAAAGTAGGGCAG 57.438 34.615 20.43 5.00 39.82 4.85
1524 5347 8.243426 GCATGGACTTTTCACATTTTGTATCTA 58.757 33.333 0.00 0.00 0.00 1.98
1525 5348 7.039504 AGCATGGACTTTTCACATTTTGTATCT 60.040 33.333 0.00 0.00 0.00 1.98
1526 5349 7.092716 AGCATGGACTTTTCACATTTTGTATC 58.907 34.615 0.00 0.00 0.00 2.24
1527 5350 6.996509 AGCATGGACTTTTCACATTTTGTAT 58.003 32.000 0.00 0.00 0.00 2.29
1528 5351 6.403866 AGCATGGACTTTTCACATTTTGTA 57.596 33.333 0.00 0.00 0.00 2.41
1529 5352 5.280654 AGCATGGACTTTTCACATTTTGT 57.719 34.783 0.00 0.00 0.00 2.83
1530 5353 5.634859 GGTAGCATGGACTTTTCACATTTTG 59.365 40.000 0.00 0.00 0.00 2.44
1531 5354 5.279456 GGGTAGCATGGACTTTTCACATTTT 60.279 40.000 0.00 0.00 0.00 1.82
1532 5355 4.220602 GGGTAGCATGGACTTTTCACATTT 59.779 41.667 0.00 0.00 0.00 2.32
1533 5356 3.763897 GGGTAGCATGGACTTTTCACATT 59.236 43.478 0.00 0.00 0.00 2.71
1534 5357 3.010584 AGGGTAGCATGGACTTTTCACAT 59.989 43.478 0.00 0.00 0.00 3.21
1535 5358 2.375174 AGGGTAGCATGGACTTTTCACA 59.625 45.455 0.00 0.00 0.00 3.58
1536 5359 3.073274 AGGGTAGCATGGACTTTTCAC 57.927 47.619 0.00 0.00 0.00 3.18
1537 5360 3.806949 AAGGGTAGCATGGACTTTTCA 57.193 42.857 0.00 0.00 0.00 2.69
1538 5361 6.826741 TGTATAAAGGGTAGCATGGACTTTTC 59.173 38.462 0.00 0.00 33.79 2.29
1539 5362 6.727394 TGTATAAAGGGTAGCATGGACTTTT 58.273 36.000 0.00 0.00 33.79 2.27
1540 5363 6.321821 TGTATAAAGGGTAGCATGGACTTT 57.678 37.500 0.00 0.00 35.71 2.66
1541 5364 5.968676 TGTATAAAGGGTAGCATGGACTT 57.031 39.130 0.00 0.00 0.00 3.01
1542 5365 7.814693 ATATGTATAAAGGGTAGCATGGACT 57.185 36.000 0.00 0.00 0.00 3.85
1543 5366 7.148239 GCAATATGTATAAAGGGTAGCATGGAC 60.148 40.741 0.00 0.00 0.00 4.02
1544 5367 6.884295 GCAATATGTATAAAGGGTAGCATGGA 59.116 38.462 0.00 0.00 0.00 3.41
1545 5368 6.183360 CGCAATATGTATAAAGGGTAGCATGG 60.183 42.308 0.00 0.00 0.00 3.66
1546 5369 6.593770 TCGCAATATGTATAAAGGGTAGCATG 59.406 38.462 0.00 0.00 0.00 4.06
1547 5370 6.707290 TCGCAATATGTATAAAGGGTAGCAT 58.293 36.000 0.00 0.00 0.00 3.79
1548 5371 6.104146 TCGCAATATGTATAAAGGGTAGCA 57.896 37.500 0.00 0.00 0.00 3.49
1549 5372 5.581085 CCTCGCAATATGTATAAAGGGTAGC 59.419 44.000 0.00 0.00 0.00 3.58
1550 5373 6.106673 CCCTCGCAATATGTATAAAGGGTAG 58.893 44.000 0.00 0.00 37.91 3.18
1551 5374 5.046159 CCCCTCGCAATATGTATAAAGGGTA 60.046 44.000 0.00 0.00 40.56 3.69
1552 5375 4.263331 CCCCTCGCAATATGTATAAAGGGT 60.263 45.833 0.00 0.00 40.56 4.34
1553 5376 4.261801 CCCCTCGCAATATGTATAAAGGG 58.738 47.826 0.00 0.00 41.61 3.95
1554 5377 4.261801 CCCCCTCGCAATATGTATAAAGG 58.738 47.826 0.00 0.00 0.00 3.11
1555 5378 4.906618 ACCCCCTCGCAATATGTATAAAG 58.093 43.478 0.00 0.00 0.00 1.85
1556 5379 4.986054 ACCCCCTCGCAATATGTATAAA 57.014 40.909 0.00 0.00 0.00 1.40
1557 5380 4.103469 ACAACCCCCTCGCAATATGTATAA 59.897 41.667 0.00 0.00 0.00 0.98
1558 5381 3.649023 ACAACCCCCTCGCAATATGTATA 59.351 43.478 0.00 0.00 0.00 1.47
1559 5382 2.441750 ACAACCCCCTCGCAATATGTAT 59.558 45.455 0.00 0.00 0.00 2.29
1560 5383 1.841277 ACAACCCCCTCGCAATATGTA 59.159 47.619 0.00 0.00 0.00 2.29
1561 5384 0.623723 ACAACCCCCTCGCAATATGT 59.376 50.000 0.00 0.00 0.00 2.29
1562 5385 2.218603 GTACAACCCCCTCGCAATATG 58.781 52.381 0.00 0.00 0.00 1.78
1563 5386 1.142262 GGTACAACCCCCTCGCAATAT 59.858 52.381 0.00 0.00 30.04 1.28
1564 5387 0.542805 GGTACAACCCCCTCGCAATA 59.457 55.000 0.00 0.00 30.04 1.90
1565 5388 1.301954 GGTACAACCCCCTCGCAAT 59.698 57.895 0.00 0.00 30.04 3.56
1566 5389 2.148052 TGGTACAACCCCCTCGCAA 61.148 57.895 0.00 0.00 37.50 4.85
1567 5390 2.527123 TGGTACAACCCCCTCGCA 60.527 61.111 0.00 0.00 37.50 5.10
1577 5400 5.683020 GGAGAAGTCCCGCTTTGGTACAA 62.683 52.174 0.00 0.00 39.70 2.41
1578 5401 1.001633 GAGAAGTCCCGCTTTGGTACA 59.998 52.381 0.00 0.00 37.59 2.90
1579 5402 1.675116 GGAGAAGTCCCGCTTTGGTAC 60.675 57.143 0.00 0.00 37.59 3.34
1580 5403 0.611714 GGAGAAGTCCCGCTTTGGTA 59.388 55.000 0.00 0.00 37.59 3.25
1581 5404 1.375326 GGAGAAGTCCCGCTTTGGT 59.625 57.895 0.00 0.00 37.59 3.67
1582 5405 0.250727 TTGGAGAAGTCCCGCTTTGG 60.251 55.000 0.00 0.00 43.15 3.28
1583 5406 1.266989 GTTTGGAGAAGTCCCGCTTTG 59.733 52.381 0.00 0.00 43.15 2.77
1584 5407 1.133915 TGTTTGGAGAAGTCCCGCTTT 60.134 47.619 0.00 0.00 43.15 3.51
1585 5408 0.472471 TGTTTGGAGAAGTCCCGCTT 59.528 50.000 0.00 0.00 43.15 4.68
1586 5409 0.035458 CTGTTTGGAGAAGTCCCGCT 59.965 55.000 0.00 0.00 43.15 5.52
1587 5410 0.034896 TCTGTTTGGAGAAGTCCCGC 59.965 55.000 0.00 0.00 43.15 6.13
1588 5411 1.618837 TCTCTGTTTGGAGAAGTCCCG 59.381 52.381 0.00 0.00 43.15 5.14
1589 5412 2.368875 TGTCTCTGTTTGGAGAAGTCCC 59.631 50.000 0.00 0.00 43.15 4.46
1590 5413 3.753294 TGTCTCTGTTTGGAGAAGTCC 57.247 47.619 0.00 0.00 42.95 3.85
1591 5414 7.730364 TTTTATGTCTCTGTTTGGAGAAGTC 57.270 36.000 0.00 0.00 42.95 3.01
1617 5440 3.138653 AGTCCACCGATACTACAGAGGAT 59.861 47.826 0.00 0.00 0.00 3.24
1619 5442 2.619177 CAGTCCACCGATACTACAGAGG 59.381 54.545 0.00 0.00 0.00 3.69
1775 5598 2.014594 CTTGCCCGATTTACCGCTC 58.985 57.895 0.00 0.00 0.00 5.03
1777 5600 2.407616 GCTTGCCCGATTTACCGC 59.592 61.111 0.00 0.00 0.00 5.68
1780 5603 1.306148 GGTAGGCTTGCCCGATTTAC 58.694 55.000 8.17 3.97 39.21 2.01
1781 5604 0.181824 GGGTAGGCTTGCCCGATTTA 59.818 55.000 6.16 0.00 39.61 1.40
1821 5665 2.203480 GGTCAACAGGCCCTGCAA 60.203 61.111 11.63 0.00 34.37 4.08
1852 5696 4.986587 CCGCGGTCGTCGTGTTCA 62.987 66.667 19.50 0.00 46.86 3.18
1888 5732 0.321021 GATCTCCATGAGGCGAGCAT 59.679 55.000 0.00 0.00 35.19 3.79
1896 5740 1.216064 TTGGTGGGGATCTCCATGAG 58.784 55.000 19.70 0.00 38.64 2.90
1900 5744 1.006998 CCAATTTGGTGGGGATCTCCA 59.993 52.381 11.36 11.36 37.26 3.86
1901 5745 1.287739 TCCAATTTGGTGGGGATCTCC 59.712 52.381 14.98 3.99 39.03 3.71
1908 5752 1.205417 GAGCATGTCCAATTTGGTGGG 59.795 52.381 14.98 5.31 39.03 4.61
1965 5809 5.373222 TGAATTTGTGATAATACCCTCCCG 58.627 41.667 0.00 0.00 0.00 5.14
1966 5810 6.434340 GGATGAATTTGTGATAATACCCTCCC 59.566 42.308 0.00 0.00 0.00 4.30
1980 5824 9.645128 TGAGACCATAATATTGGATGAATTTGT 57.355 29.630 0.23 0.00 39.25 2.83
1999 5843 1.888436 GCACCCGACTGATGAGACCA 61.888 60.000 0.00 0.00 0.00 4.02
2007 5851 3.062466 CCGAGAGCACCCGACTGA 61.062 66.667 0.00 0.00 0.00 3.41
2050 5894 1.001520 TCTTCGCTCAAAATCCACCGA 59.998 47.619 0.00 0.00 0.00 4.69
2069 5913 5.962423 GCGTTAGATGATCAAAAGCTTCTTC 59.038 40.000 0.00 0.00 0.00 2.87
2094 5938 0.669318 ACGGTGCTTCCACATACGTG 60.669 55.000 0.00 0.00 43.88 4.49
2099 5943 2.561478 AGTAAACGGTGCTTCCACAT 57.439 45.000 0.00 0.00 43.88 3.21
2101 5945 3.592059 TCATAGTAAACGGTGCTTCCAC 58.408 45.455 0.00 0.00 41.32 4.02
2112 5957 7.461107 TGCTAGCGTCAATTTTCATAGTAAAC 58.539 34.615 10.77 0.00 0.00 2.01
2146 6021 0.679640 TGCATAAGAACGGCCCCAAG 60.680 55.000 0.00 0.00 0.00 3.61
2158 6033 0.029834 GAATGGCCACGCTGCATAAG 59.970 55.000 8.16 0.00 0.00 1.73
2194 6069 4.640771 TTGCAAGAAGGATAGTGAGGTT 57.359 40.909 0.00 0.00 0.00 3.50
2200 6123 5.819901 GCTTGTCTATTGCAAGAAGGATAGT 59.180 40.000 4.94 0.00 44.29 2.12
2225 6148 0.529992 AGTTTGTAGATAGGCGCGCC 60.530 55.000 42.34 42.34 0.00 6.53
2248 6171 1.934589 TCGGCGACAATAGTGAATGG 58.065 50.000 4.99 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.