Multiple sequence alignment - TraesCS2A01G133800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G133800 chr2A 100.000 4614 0 0 1 4614 80484190 80479577 0.000000e+00 8521.0
1 TraesCS2A01G133800 chr2A 95.349 129 6 0 469 597 628400209 628400081 6.050000e-49 206.0
2 TraesCS2A01G133800 chr2D 92.083 2602 124 38 683 3224 79882111 79879532 0.000000e+00 3589.0
3 TraesCS2A01G133800 chr2D 91.975 1458 83 12 1797 3226 42884298 42885749 0.000000e+00 2013.0
4 TraesCS2A01G133800 chr2D 92.390 1301 59 21 3348 4614 42885749 42887043 0.000000e+00 1818.0
5 TraesCS2A01G133800 chr2D 92.189 1293 72 17 3347 4614 79879534 79878246 0.000000e+00 1801.0
6 TraesCS2A01G133800 chr2D 81.975 405 44 16 35 436 79882759 79882381 2.680000e-82 316.0
7 TraesCS2A01G133800 chr2D 95.349 129 6 0 469 597 362745038 362744910 6.050000e-49 206.0
8 TraesCS2A01G133800 chr2B 91.581 2637 129 43 645 3224 131294382 131291782 0.000000e+00 3554.0
9 TraesCS2A01G133800 chr2B 94.340 901 24 13 3347 4226 131291784 131290890 0.000000e+00 1356.0
10 TraesCS2A01G133800 chr2B 88.832 394 36 5 4223 4614 131290788 131290401 1.160000e-130 477.0
11 TraesCS2A01G133800 chr2B 97.101 138 4 0 3222 3359 549559551 549559414 2.780000e-57 233.0
12 TraesCS2A01G133800 chr2B 96.154 130 5 0 3222 3351 77137512 77137383 3.620000e-51 213.0
13 TraesCS2A01G133800 chr2B 95.420 131 6 0 3223 3353 545760388 545760518 4.680000e-50 209.0
14 TraesCS2A01G133800 chr2B 95.349 129 6 0 469 597 696447778 696447650 6.050000e-49 206.0
15 TraesCS2A01G133800 chr2B 93.284 134 9 0 467 600 22774402 22774535 1.010000e-46 198.0
16 TraesCS2A01G133800 chr2B 97.059 34 1 0 592 625 131294401 131294368 1.790000e-04 58.4
17 TraesCS2A01G133800 chr3A 96.037 656 24 2 1413 2067 592136674 592136020 0.000000e+00 1066.0
18 TraesCS2A01G133800 chr3A 95.427 656 28 2 1413 2067 592201375 592200721 0.000000e+00 1044.0
19 TraesCS2A01G133800 chr3A 95.588 136 6 0 3222 3357 736073300 736073165 7.770000e-53 219.0
20 TraesCS2A01G133800 chr5A 96.685 181 6 0 1441 1621 533500386 533500566 7.500000e-78 302.0
21 TraesCS2A01G133800 chr5A 92.414 145 8 1 3221 3365 25890157 25890298 2.180000e-48 204.0
22 TraesCS2A01G133800 chr6B 96.875 128 4 0 3223 3350 54403661 54403534 1.010000e-51 215.0
23 TraesCS2A01G133800 chr6B 94.203 138 7 1 3222 3359 207511028 207510892 4.680000e-50 209.0
24 TraesCS2A01G133800 chr6B 95.349 129 6 0 469 597 220694833 220694705 6.050000e-49 206.0
25 TraesCS2A01G133800 chr1B 96.183 131 5 0 3222 3352 543038775 543038905 1.010000e-51 215.0
26 TraesCS2A01G133800 chr7D 92.958 142 8 2 3214 3355 333908067 333908206 6.050000e-49 206.0
27 TraesCS2A01G133800 chr7B 95.349 129 6 0 469 597 133322951 133322823 6.050000e-49 206.0
28 TraesCS2A01G133800 chr4D 95.349 129 6 0 469 597 458458413 458458541 6.050000e-49 206.0
29 TraesCS2A01G133800 chr6A 92.806 139 10 0 468 606 604879798 604879660 7.830000e-48 202.0
30 TraesCS2A01G133800 chr3D 94.615 130 7 0 467 596 412099942 412099813 7.830000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G133800 chr2A 80479577 80484190 4613 True 8521.00 8521 100.0000 1 4614 1 chr2A.!!$R1 4613
1 TraesCS2A01G133800 chr2D 42884298 42887043 2745 False 1915.50 2013 92.1825 1797 4614 2 chr2D.!!$F1 2817
2 TraesCS2A01G133800 chr2D 79878246 79882759 4513 True 1902.00 3589 88.7490 35 4614 3 chr2D.!!$R2 4579
3 TraesCS2A01G133800 chr2B 131290401 131294401 4000 True 1361.35 3554 92.9530 592 4614 4 chr2B.!!$R4 4022
4 TraesCS2A01G133800 chr3A 592136020 592136674 654 True 1066.00 1066 96.0370 1413 2067 1 chr3A.!!$R1 654
5 TraesCS2A01G133800 chr3A 592200721 592201375 654 True 1044.00 1044 95.4270 1413 2067 1 chr3A.!!$R2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 276 0.036388 AACGATCACTGGGCGTTGAT 60.036 50.0 0.00 0.00 45.28 2.57 F
485 677 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 F
1303 1518 0.040351 CTCCTCCAGTCCTCCTCACA 59.960 60.0 0.00 0.00 0.00 3.58 F
1678 1916 0.837691 TCCACACTCCACAGGCTGAT 60.838 55.0 23.66 2.23 0.00 2.90 F
3238 3554 0.323178 GTGTACTCCCTCTGTCCGGA 60.323 60.0 0.00 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2150 0.036732 TTACTGGGCAGCAAGTGGAG 59.963 55.0 9.69 0.0 0.00 3.86 R
2074 2384 0.476771 AACCCAACCCCTAGTGTGTG 59.523 55.0 0.00 0.0 0.00 3.82 R
3222 3538 0.702902 ACTTCCGGACAGAGGGAGTA 59.297 55.0 1.83 0.0 45.46 2.59 R
3331 3647 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.0 0.00 3.46 R
4450 4902 0.467804 TGCGCCTCCATATGTTGCTA 59.532 50.0 4.18 0.0 0.00 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.775397 AAAATTGTCAGGACAGATTTTGTTG 57.225 32.000 21.05 0.00 42.94 3.33
31 32 4.916983 TTGTCAGGACAGATTTTGTTGG 57.083 40.909 2.01 0.00 42.94 3.77
32 33 2.622942 TGTCAGGACAGATTTTGTTGGC 59.377 45.455 0.00 0.00 41.05 4.52
33 34 2.622942 GTCAGGACAGATTTTGTTGGCA 59.377 45.455 0.00 0.00 41.05 4.92
37 38 3.642848 AGGACAGATTTTGTTGGCATGTT 59.357 39.130 0.00 0.00 41.05 2.71
54 55 4.497507 GCATGTTCTTTAAATACTCCGGCC 60.498 45.833 0.00 0.00 0.00 6.13
55 56 4.563140 TGTTCTTTAAATACTCCGGCCT 57.437 40.909 0.00 0.00 0.00 5.19
56 57 4.510571 TGTTCTTTAAATACTCCGGCCTC 58.489 43.478 0.00 0.00 0.00 4.70
70 71 1.051556 GGCCTCCCCTCTCTCGAAAT 61.052 60.000 0.00 0.00 0.00 2.17
85 88 1.553248 CGAAATCCCCACTCTACCACA 59.447 52.381 0.00 0.00 0.00 4.17
86 89 2.027561 CGAAATCCCCACTCTACCACAA 60.028 50.000 0.00 0.00 0.00 3.33
97 100 0.732880 CTACCACAAGAGTGTCGCCG 60.733 60.000 0.00 0.00 44.39 6.46
134 137 2.075566 TGCACCACCTCCAACTCCA 61.076 57.895 0.00 0.00 0.00 3.86
135 138 1.380302 GCACCACCTCCAACTCCAT 59.620 57.895 0.00 0.00 0.00 3.41
138 141 1.283029 CACCACCTCCAACTCCATCAT 59.717 52.381 0.00 0.00 0.00 2.45
141 144 1.747355 CACCTCCAACTCCATCATTGC 59.253 52.381 0.00 0.00 0.00 3.56
145 148 0.452987 CCAACTCCATCATTGCCGTG 59.547 55.000 0.00 0.00 0.00 4.94
154 157 2.586079 ATTGCCGTGAGATCGCCG 60.586 61.111 0.00 0.00 0.00 6.46
159 162 2.944557 CGTGAGATCGCCGACACG 60.945 66.667 13.07 13.07 46.78 4.49
163 166 0.731514 TGAGATCGCCGACACGTTTC 60.732 55.000 0.00 0.00 0.00 2.78
177 180 2.151295 GTTTCCGACGAGCTCAACC 58.849 57.895 15.40 0.59 0.00 3.77
186 189 0.321564 CGAGCTCAACCACCCATTCA 60.322 55.000 15.40 0.00 0.00 2.57
187 190 1.881925 CGAGCTCAACCACCCATTCAA 60.882 52.381 15.40 0.00 0.00 2.69
219 222 2.350895 CCATTGCCCTCCACGACA 59.649 61.111 0.00 0.00 0.00 4.35
223 226 3.818121 TTGCCCTCCACGACAACCG 62.818 63.158 0.00 0.00 45.44 4.44
235 238 0.802607 GACAACCGACGCATCTCCTC 60.803 60.000 0.00 0.00 0.00 3.71
268 271 2.819595 CCCAACGATCACTGGGCG 60.820 66.667 14.61 0.00 45.80 6.13
269 272 2.047274 CCAACGATCACTGGGCGT 60.047 61.111 2.63 0.00 40.35 5.68
271 274 3.966215 AACGATCACTGGGCGTTG 58.034 55.556 0.00 0.00 45.28 4.10
272 275 1.369692 AACGATCACTGGGCGTTGA 59.630 52.632 0.00 0.00 45.28 3.18
273 276 0.036388 AACGATCACTGGGCGTTGAT 60.036 50.000 0.00 0.00 45.28 2.57
276 279 1.062587 CGATCACTGGGCGTTGATTTC 59.937 52.381 0.00 0.00 0.00 2.17
277 280 2.083774 GATCACTGGGCGTTGATTTCA 58.916 47.619 0.00 0.00 0.00 2.69
278 281 2.198827 TCACTGGGCGTTGATTTCAT 57.801 45.000 0.00 0.00 0.00 2.57
279 282 2.083774 TCACTGGGCGTTGATTTCATC 58.916 47.619 0.00 0.00 0.00 2.92
280 283 1.086696 ACTGGGCGTTGATTTCATCG 58.913 50.000 6.66 6.66 40.77 3.84
281 284 1.338674 ACTGGGCGTTGATTTCATCGA 60.339 47.619 13.59 0.00 40.40 3.59
282 285 1.328680 CTGGGCGTTGATTTCATCGAG 59.671 52.381 13.59 1.00 40.40 4.04
283 286 1.066502 TGGGCGTTGATTTCATCGAGA 60.067 47.619 13.59 0.00 40.40 4.04
286 289 1.327764 GCGTTGATTTCATCGAGACCC 59.672 52.381 13.59 0.00 40.40 4.46
336 339 2.762472 GTCTCAATTGCATCGTGTTCG 58.238 47.619 0.00 0.00 38.55 3.95
366 369 5.755861 GCTTACTCCAAGTCTCACCATTATC 59.244 44.000 0.00 0.00 36.55 1.75
376 379 8.680001 CAAGTCTCACCATTATCATTCAAATCA 58.320 33.333 0.00 0.00 0.00 2.57
422 425 8.436046 ACTTCCTACGTGTAAAAACAACAATA 57.564 30.769 0.00 0.00 0.00 1.90
471 663 2.878429 CAGTCGCTGCCGAGTACT 59.122 61.111 0.00 0.00 44.84 2.73
472 664 1.226435 CAGTCGCTGCCGAGTACTC 60.226 63.158 13.18 13.18 44.84 2.59
473 665 2.102553 GTCGCTGCCGAGTACTCC 59.897 66.667 17.23 4.79 45.38 3.85
474 666 3.138798 TCGCTGCCGAGTACTCCC 61.139 66.667 17.23 9.03 38.82 4.30
475 667 3.141488 CGCTGCCGAGTACTCCCT 61.141 66.667 17.23 0.00 36.29 4.20
476 668 2.809010 GCTGCCGAGTACTCCCTC 59.191 66.667 17.23 6.97 0.00 4.30
477 669 2.787567 GCTGCCGAGTACTCCCTCC 61.788 68.421 17.23 3.87 0.00 4.30
478 670 2.439701 TGCCGAGTACTCCCTCCG 60.440 66.667 17.23 5.64 0.00 4.63
479 671 2.439883 GCCGAGTACTCCCTCCGT 60.440 66.667 17.23 0.00 0.00 4.69
480 672 2.050934 GCCGAGTACTCCCTCCGTT 61.051 63.158 17.23 0.00 0.00 4.44
481 673 2.002509 GCCGAGTACTCCCTCCGTTC 62.003 65.000 17.23 0.00 0.00 3.95
482 674 1.712977 CCGAGTACTCCCTCCGTTCG 61.713 65.000 17.23 2.97 0.00 3.95
483 675 1.712977 CGAGTACTCCCTCCGTTCGG 61.713 65.000 17.23 4.74 0.00 4.30
484 676 0.393537 GAGTACTCCCTCCGTTCGGA 60.394 60.000 12.13 13.34 0.00 4.55
485 677 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
486 678 0.890683 GTACTCCCTCCGTTCGGAAA 59.109 55.000 14.79 3.49 33.41 3.13
487 679 1.479730 GTACTCCCTCCGTTCGGAAAT 59.520 52.381 14.79 2.39 33.41 2.17
488 680 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
489 681 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
490 682 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
491 683 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
492 684 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
493 685 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
494 686 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
495 687 3.581755 CTCCGTTCGGAAATACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
496 688 4.181578 CTCCGTTCGGAAATACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
497 689 4.178540 TCCGTTCGGAAATACTTGTCATC 58.821 43.478 11.66 0.00 0.00 2.92
498 690 3.930229 CCGTTCGGAAATACTTGTCATCA 59.070 43.478 5.19 0.00 0.00 3.07
499 691 4.390603 CCGTTCGGAAATACTTGTCATCAA 59.609 41.667 5.19 0.00 0.00 2.57
500 692 5.106869 CCGTTCGGAAATACTTGTCATCAAA 60.107 40.000 5.19 0.00 32.87 2.69
501 693 6.367421 CGTTCGGAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
502 694 7.021196 CGTTCGGAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
503 695 7.007367 CGTTCGGAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
504 696 6.851609 TCGGAAATACTTGTCATCAAAATGG 58.148 36.000 0.00 0.00 33.42 3.16
505 697 6.657117 TCGGAAATACTTGTCATCAAAATGGA 59.343 34.615 0.00 0.00 33.42 3.41
506 698 7.339212 TCGGAAATACTTGTCATCAAAATGGAT 59.661 33.333 0.00 0.00 33.42 3.41
507 699 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
513 705 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
514 706 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
515 707 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
516 708 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
517 709 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
518 710 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
519 711 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
527 719 8.112016 TGGATAAAAGGAGATGTATCTAGACG 57.888 38.462 0.00 0.00 37.25 4.18
528 720 7.724506 TGGATAAAAGGAGATGTATCTAGACGT 59.275 37.037 0.00 0.00 37.25 4.34
529 721 9.228949 GGATAAAAGGAGATGTATCTAGACGTA 57.771 37.037 0.00 0.00 37.25 3.57
536 728 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
580 772 9.474920 TTGTTCATTTTGATGACAAGTATTTCC 57.525 29.630 0.00 0.00 37.32 3.13
581 773 7.807433 TGTTCATTTTGATGACAAGTATTTCCG 59.193 33.333 0.00 0.00 37.32 4.30
582 774 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
583 775 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
584 776 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
585 777 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
586 778 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
587 779 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
588 780 2.498481 TGACAAGTATTTCCGGACGGAT 59.502 45.455 14.89 3.07 44.74 4.18
589 781 2.864343 GACAAGTATTTCCGGACGGATG 59.136 50.000 14.89 10.86 44.74 3.51
625 817 0.808755 GGCCGAACATCACCGATTTT 59.191 50.000 0.00 0.00 0.00 1.82
626 818 1.201414 GGCCGAACATCACCGATTTTT 59.799 47.619 0.00 0.00 0.00 1.94
664 856 5.365403 GTGAACATCACCGATTTAACCAA 57.635 39.130 0.00 0.00 41.37 3.67
668 860 0.791422 TCACCGATTTAACCAACGCG 59.209 50.000 3.53 3.53 0.00 6.01
670 862 0.792031 ACCGATTTAACCAACGCGAC 59.208 50.000 15.93 0.00 0.00 5.19
675 867 0.875728 TTTAACCAACGCGACCCATG 59.124 50.000 15.93 3.27 0.00 3.66
676 868 0.250381 TTAACCAACGCGACCCATGT 60.250 50.000 15.93 0.00 0.00 3.21
687 879 1.733389 CGACCCATGTGAAGCAAATGC 60.733 52.381 0.00 0.00 42.49 3.56
717 909 2.088178 CAAGCCACAAAATCGCGGC 61.088 57.895 6.13 0.00 45.23 6.53
778 970 6.503524 CAAAATGAGAAGGAAACGGAGAAAA 58.496 36.000 0.00 0.00 0.00 2.29
786 978 4.833390 AGGAAACGGAGAAAATTCGAGAT 58.167 39.130 0.00 0.00 0.00 2.75
796 994 3.806625 AAATTCGAGATGCAATTGGGG 57.193 42.857 7.72 0.00 0.00 4.96
799 997 2.505650 TCGAGATGCAATTGGGGAAA 57.494 45.000 7.72 0.00 0.00 3.13
810 1008 4.314121 CAATTGGGGAAAAGAAAATGCGA 58.686 39.130 0.00 0.00 0.00 5.10
932 1131 1.000052 GCTCACCTAATACGCTCTCCC 60.000 57.143 0.00 0.00 0.00 4.30
933 1132 2.588620 CTCACCTAATACGCTCTCCCT 58.411 52.381 0.00 0.00 0.00 4.20
956 1155 1.075525 TCTATCCACCCCCACCTCG 60.076 63.158 0.00 0.00 0.00 4.63
1063 1266 4.843331 GGGAGGAGGATGGGGGCA 62.843 72.222 0.00 0.00 0.00 5.36
1291 1506 1.380515 CCTCTTCCGCTCTCCTCCA 60.381 63.158 0.00 0.00 0.00 3.86
1293 1508 0.682855 CTCTTCCGCTCTCCTCCAGT 60.683 60.000 0.00 0.00 0.00 4.00
1295 1510 1.671901 CTTCCGCTCTCCTCCAGTCC 61.672 65.000 0.00 0.00 0.00 3.85
1296 1511 2.043450 CCGCTCTCCTCCAGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
1297 1512 2.124693 CCGCTCTCCTCCAGTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
1298 1513 2.124693 CGCTCTCCTCCAGTCCTCC 61.125 68.421 0.00 0.00 0.00 4.30
1299 1514 1.309688 GCTCTCCTCCAGTCCTCCT 59.690 63.158 0.00 0.00 0.00 3.69
1301 1516 0.628522 CTCTCCTCCAGTCCTCCTCA 59.371 60.000 0.00 0.00 0.00 3.86
1302 1517 0.333312 TCTCCTCCAGTCCTCCTCAC 59.667 60.000 0.00 0.00 0.00 3.51
1303 1518 0.040351 CTCCTCCAGTCCTCCTCACA 59.960 60.000 0.00 0.00 0.00 3.58
1317 1536 1.680555 CCTCACAGCTCCGTAGAGACT 60.681 57.143 0.00 0.00 43.39 3.24
1330 1565 1.610363 AGAGACTGTGCTCGAACTGA 58.390 50.000 1.65 0.00 39.87 3.41
1406 1641 3.439476 TCTCTCGTTTCCGGAAGTAGAAG 59.561 47.826 17.97 13.25 33.95 2.85
1469 1704 6.855836 TCAAATAGGTGCTTGATTGTGATTC 58.144 36.000 0.00 0.00 0.00 2.52
1526 1761 5.201713 AGCGATCGATCTTTTGGATTAGA 57.798 39.130 21.57 0.00 34.33 2.10
1567 1802 0.953960 GCGTCTGTTGGGGTCGAAAT 60.954 55.000 0.00 0.00 0.00 2.17
1678 1916 0.837691 TCCACACTCCACAGGCTGAT 60.838 55.000 23.66 2.23 0.00 2.90
1751 1992 4.745620 GCTATAGTGCTACAGTTAGGCAAC 59.254 45.833 0.84 0.00 37.73 4.17
2050 2360 8.456904 TGTGTTACATTAGTCATAGTTTCGTC 57.543 34.615 0.00 0.00 0.00 4.20
2135 2445 5.840693 TGATCTGGATAGAGTTTAGGATGCA 59.159 40.000 0.00 0.00 36.14 3.96
2155 2466 5.858381 TGCATTCTAAATCTAGGCTCGATT 58.142 37.500 8.34 8.34 32.75 3.34
2192 2503 7.967908 TGTGCTAATTTTAAATTTTCTCCCCA 58.032 30.769 8.28 0.00 0.00 4.96
2277 2588 6.826893 AACATTGACATTTCTTCGGTTTTG 57.173 33.333 0.00 0.00 0.00 2.44
2332 2643 4.227300 TCCCACAGCTACAATGTATCCTTT 59.773 41.667 0.00 0.00 0.00 3.11
2375 2686 1.906574 TCCGGGAAGTGCAATCTAGTT 59.093 47.619 0.00 0.00 0.00 2.24
2540 2851 9.502091 AGTCTATTGACAACACTTTGCTTAATA 57.498 29.630 9.96 0.00 45.20 0.98
2554 2865 7.646526 ACTTTGCTTAATACCGTTTGTTCTTTC 59.353 33.333 0.00 0.00 0.00 2.62
2565 2876 5.912955 CCGTTTGTTCTTTCTGTACATTTCC 59.087 40.000 0.00 0.00 0.00 3.13
2626 2937 8.408043 AATATTCTGTCATTGTGTCTTTTCCA 57.592 30.769 0.00 0.00 0.00 3.53
2659 2970 1.148310 CTTCAACATCGCGGTCTTGT 58.852 50.000 6.13 2.45 0.00 3.16
2736 3049 7.119407 GGAAGTGGACAGGTTCTTAATACTTTC 59.881 40.741 0.00 0.00 0.00 2.62
2757 3071 1.108776 CCCCCATTGAAGCATCACTG 58.891 55.000 2.56 2.56 36.33 3.66
2761 3075 2.821378 CCCATTGAAGCATCACTGACAA 59.179 45.455 10.48 0.00 38.21 3.18
2870 3184 2.601763 GGAGTCTTTATGTTGGTACGCG 59.398 50.000 3.53 3.53 0.00 6.01
2900 3214 6.426937 GGATAAGTTTCTTTGTAGTGCAGACA 59.573 38.462 0.00 0.00 0.00 3.41
3050 3365 5.967674 ACTGTACATTCTGCGTACGTATTAC 59.032 40.000 17.90 9.10 41.76 1.89
3096 3411 4.855715 TCAATTTTGGTCCGCAATGTTA 57.144 36.364 0.00 0.00 0.00 2.41
3103 3418 5.769484 TTGGTCCGCAATGTTAAAAACTA 57.231 34.783 0.00 0.00 0.00 2.24
3105 3420 6.334102 TGGTCCGCAATGTTAAAAACTATT 57.666 33.333 0.00 0.00 0.00 1.73
3177 3492 5.041191 TGCCCCATGTTTTGTGTAAATTT 57.959 34.783 0.00 0.00 0.00 1.82
3222 3538 5.376625 ACACCATTGAATTCACAGTAGTGT 58.623 37.500 7.89 13.88 46.01 3.55
3223 3539 6.530120 ACACCATTGAATTCACAGTAGTGTA 58.470 36.000 19.37 1.36 46.01 2.90
3224 3540 6.426937 ACACCATTGAATTCACAGTAGTGTAC 59.573 38.462 19.37 0.00 46.01 2.90
3225 3541 6.650807 CACCATTGAATTCACAGTAGTGTACT 59.349 38.462 7.89 0.00 46.01 2.73
3226 3542 6.874134 ACCATTGAATTCACAGTAGTGTACTC 59.126 38.462 7.89 0.00 46.01 2.59
3227 3543 6.313905 CCATTGAATTCACAGTAGTGTACTCC 59.686 42.308 7.89 0.00 46.01 3.85
3228 3544 5.401531 TGAATTCACAGTAGTGTACTCCC 57.598 43.478 3.38 0.00 46.01 4.30
3229 3545 5.084519 TGAATTCACAGTAGTGTACTCCCT 58.915 41.667 3.38 0.00 46.01 4.20
3230 3546 5.185249 TGAATTCACAGTAGTGTACTCCCTC 59.815 44.000 3.38 0.00 46.01 4.30
3231 3547 4.383931 TTCACAGTAGTGTACTCCCTCT 57.616 45.455 2.08 0.00 46.01 3.69
3232 3548 3.687125 TCACAGTAGTGTACTCCCTCTG 58.313 50.000 2.08 2.76 46.01 3.35
3233 3549 3.074094 TCACAGTAGTGTACTCCCTCTGT 59.926 47.826 2.08 9.73 46.01 3.41
3234 3550 3.440872 CACAGTAGTGTACTCCCTCTGTC 59.559 52.174 2.08 0.00 40.92 3.51
3235 3551 3.018149 CAGTAGTGTACTCCCTCTGTCC 58.982 54.545 0.00 0.00 36.76 4.02
3236 3552 2.015587 GTAGTGTACTCCCTCTGTCCG 58.984 57.143 0.00 0.00 0.00 4.79
3237 3553 0.323542 AGTGTACTCCCTCTGTCCGG 60.324 60.000 0.00 0.00 0.00 5.14
3238 3554 0.323178 GTGTACTCCCTCTGTCCGGA 60.323 60.000 0.00 0.00 0.00 5.14
3239 3555 0.406750 TGTACTCCCTCTGTCCGGAA 59.593 55.000 5.23 0.00 0.00 4.30
3240 3556 1.104630 GTACTCCCTCTGTCCGGAAG 58.895 60.000 5.23 6.51 0.00 3.46
3241 3557 0.702902 TACTCCCTCTGTCCGGAAGT 59.297 55.000 5.23 6.86 0.00 3.01
3242 3558 0.702902 ACTCCCTCTGTCCGGAAGTA 59.297 55.000 5.23 0.00 0.00 2.24
3243 3559 1.104630 CTCCCTCTGTCCGGAAGTAC 58.895 60.000 5.23 0.00 0.00 2.73
3244 3560 0.702902 TCCCTCTGTCCGGAAGTACT 59.297 55.000 5.23 0.00 0.00 2.73
3245 3561 1.076677 TCCCTCTGTCCGGAAGTACTT 59.923 52.381 5.23 8.13 0.00 2.24
3246 3562 1.204941 CCCTCTGTCCGGAAGTACTTG 59.795 57.143 14.14 0.00 0.00 3.16
3247 3563 1.893801 CCTCTGTCCGGAAGTACTTGT 59.106 52.381 14.14 0.00 0.00 3.16
3248 3564 2.094649 CCTCTGTCCGGAAGTACTTGTC 60.095 54.545 14.14 4.21 0.00 3.18
3249 3565 2.557056 CTCTGTCCGGAAGTACTTGTCA 59.443 50.000 14.14 2.24 0.00 3.58
3250 3566 3.162666 TCTGTCCGGAAGTACTTGTCAT 58.837 45.455 14.14 0.00 0.00 3.06
3251 3567 3.192844 TCTGTCCGGAAGTACTTGTCATC 59.807 47.826 14.14 0.00 0.00 2.92
3252 3568 2.894765 TGTCCGGAAGTACTTGTCATCA 59.105 45.455 14.14 4.25 0.00 3.07
3253 3569 3.322541 TGTCCGGAAGTACTTGTCATCAA 59.677 43.478 14.14 0.00 0.00 2.57
3254 3570 4.202274 TGTCCGGAAGTACTTGTCATCAAA 60.202 41.667 14.14 0.00 32.87 2.69
3255 3571 4.753107 GTCCGGAAGTACTTGTCATCAAAA 59.247 41.667 14.14 0.00 32.87 2.44
3256 3572 5.411669 GTCCGGAAGTACTTGTCATCAAAAT 59.588 40.000 14.14 0.00 32.87 1.82
3257 3573 5.411361 TCCGGAAGTACTTGTCATCAAAATG 59.589 40.000 14.14 0.00 32.87 2.32
3258 3574 5.391950 CCGGAAGTACTTGTCATCAAAATGG 60.392 44.000 14.14 0.00 33.42 3.16
3259 3575 5.411361 CGGAAGTACTTGTCATCAAAATGGA 59.589 40.000 14.14 0.00 33.42 3.41
3260 3576 6.094048 CGGAAGTACTTGTCATCAAAATGGAT 59.906 38.462 14.14 0.00 33.42 3.41
3261 3577 7.279981 CGGAAGTACTTGTCATCAAAATGGATA 59.720 37.037 14.14 0.00 33.42 2.59
3262 3578 8.956426 GGAAGTACTTGTCATCAAAATGGATAA 58.044 33.333 14.14 0.00 33.42 1.75
3266 3582 9.573133 GTACTTGTCATCAAAATGGATAAAAGG 57.427 33.333 0.00 0.00 33.42 3.11
3267 3583 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
3268 3584 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
3269 3585 6.022315 TGTCATCAAAATGGATAAAAGGGGT 58.978 36.000 0.00 0.00 33.42 4.95
3270 3586 6.500049 TGTCATCAAAATGGATAAAAGGGGTT 59.500 34.615 0.00 0.00 33.42 4.11
3271 3587 6.818142 GTCATCAAAATGGATAAAAGGGGTTG 59.182 38.462 0.00 0.00 33.42 3.77
3272 3588 6.500049 TCATCAAAATGGATAAAAGGGGTTGT 59.500 34.615 0.00 0.00 33.42 3.32
3273 3589 7.676043 TCATCAAAATGGATAAAAGGGGTTGTA 59.324 33.333 0.00 0.00 33.42 2.41
3274 3590 8.485392 CATCAAAATGGATAAAAGGGGTTGTAT 58.515 33.333 0.00 0.00 0.00 2.29
3275 3591 8.073467 TCAAAATGGATAAAAGGGGTTGTATC 57.927 34.615 0.00 0.00 0.00 2.24
3276 3592 7.898636 TCAAAATGGATAAAAGGGGTTGTATCT 59.101 33.333 0.00 0.00 0.00 1.98
3277 3593 9.196139 CAAAATGGATAAAAGGGGTTGTATCTA 57.804 33.333 0.00 0.00 0.00 1.98
3278 3594 8.996651 AAATGGATAAAAGGGGTTGTATCTAG 57.003 34.615 0.00 0.00 0.00 2.43
3279 3595 7.947782 ATGGATAAAAGGGGTTGTATCTAGA 57.052 36.000 0.00 0.00 0.00 2.43
3280 3596 7.133133 TGGATAAAAGGGGTTGTATCTAGAC 57.867 40.000 0.00 0.00 0.00 2.59
3281 3597 6.674861 TGGATAAAAGGGGTTGTATCTAGACA 59.325 38.462 0.00 0.00 0.00 3.41
3282 3598 7.349859 TGGATAAAAGGGGTTGTATCTAGACAT 59.650 37.037 0.00 0.00 0.00 3.06
3283 3599 8.877195 GGATAAAAGGGGTTGTATCTAGACATA 58.123 37.037 0.00 0.00 0.00 2.29
3287 3603 9.990868 AAAAGGGGTTGTATCTAGACATATTTT 57.009 29.630 0.00 0.00 0.00 1.82
3290 3606 9.448587 AGGGGTTGTATCTAGACATATTTTAGT 57.551 33.333 0.00 0.00 0.00 2.24
3314 3630 9.268282 AGTTCTAGATACATCTCTTTTTACCCA 57.732 33.333 0.00 0.00 38.32 4.51
3320 3636 9.753674 AGATACATCTCTTTTTACCCATTTTGA 57.246 29.630 0.00 0.00 29.30 2.69
3323 3639 8.421249 ACATCTCTTTTTACCCATTTTGATGA 57.579 30.769 0.00 0.00 33.85 2.92
3324 3640 8.306761 ACATCTCTTTTTACCCATTTTGATGAC 58.693 33.333 0.00 0.00 33.85 3.06
3325 3641 7.831691 TCTCTTTTTACCCATTTTGATGACA 57.168 32.000 0.00 0.00 0.00 3.58
3326 3642 8.243961 TCTCTTTTTACCCATTTTGATGACAA 57.756 30.769 0.00 0.00 0.00 3.18
3327 3643 8.359642 TCTCTTTTTACCCATTTTGATGACAAG 58.640 33.333 0.00 0.00 37.32 3.16
3328 3644 8.017418 TCTTTTTACCCATTTTGATGACAAGT 57.983 30.769 0.00 0.00 37.32 3.16
3329 3645 9.137459 TCTTTTTACCCATTTTGATGACAAGTA 57.863 29.630 0.00 0.00 37.32 2.24
3330 3646 9.927668 CTTTTTACCCATTTTGATGACAAGTAT 57.072 29.630 0.00 0.00 37.32 2.12
3334 3650 9.921637 TTACCCATTTTGATGACAAGTATTTTC 57.078 29.630 0.00 0.00 37.32 2.29
3335 3651 7.090173 ACCCATTTTGATGACAAGTATTTTCG 58.910 34.615 0.00 0.00 37.32 3.46
3336 3652 6.531240 CCCATTTTGATGACAAGTATTTTCGG 59.469 38.462 0.00 0.00 37.32 4.30
3337 3653 7.312154 CCATTTTGATGACAAGTATTTTCGGA 58.688 34.615 0.00 0.00 37.32 4.55
3338 3654 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3339 3655 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3340 3656 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3341 3657 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3342 3658 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3343 3659 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3344 3660 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3345 3661 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3718 4038 4.183865 GGCCATCCAAAAATAGAAAGTGC 58.816 43.478 0.00 0.00 0.00 4.40
3818 4139 1.153289 CGGTGCTGGAAGGAGGATG 60.153 63.158 0.00 0.00 31.73 3.51
3976 4298 8.367911 GGAGTATATTCATGTGGTATGTTCTGA 58.632 37.037 0.00 0.00 0.00 3.27
3983 4305 5.934043 TCATGTGGTATGTTCTGAGTTTCTG 59.066 40.000 0.00 0.00 0.00 3.02
3984 4306 4.065088 TGTGGTATGTTCTGAGTTTCTGC 58.935 43.478 0.00 0.00 0.00 4.26
3990 4330 7.147976 GGTATGTTCTGAGTTTCTGCAAAAAT 58.852 34.615 0.00 0.00 0.00 1.82
4001 4341 5.721876 TTCTGCAAAAATTCTTGTTGCTG 57.278 34.783 14.09 13.38 46.19 4.41
4023 4363 2.687297 TGCCTTGAGATATCTGAGGCT 58.313 47.619 34.58 8.49 45.21 4.58
4089 4429 5.221382 GCACATGGAAGGCAAATATTCAGAT 60.221 40.000 0.00 0.00 0.00 2.90
4174 4514 2.440599 GGAGGCCCCAGCTTTTCA 59.559 61.111 0.00 0.00 39.73 2.69
4197 4537 3.614630 GCATGCAAGTTTGGCAATCACTA 60.615 43.478 14.21 0.00 45.60 2.74
4205 4545 5.564550 AGTTTGGCAATCACTATTCAGACT 58.435 37.500 10.67 0.00 0.00 3.24
4206 4546 6.006449 AGTTTGGCAATCACTATTCAGACTT 58.994 36.000 10.67 0.00 0.00 3.01
4207 4547 5.885230 TTGGCAATCACTATTCAGACTTG 57.115 39.130 0.00 0.00 0.00 3.16
4209 4549 5.748402 TGGCAATCACTATTCAGACTTGAT 58.252 37.500 0.00 0.00 32.27 2.57
4211 4551 7.337938 TGGCAATCACTATTCAGACTTGATAA 58.662 34.615 0.00 0.00 32.27 1.75
4212 4552 7.828717 TGGCAATCACTATTCAGACTTGATAAA 59.171 33.333 0.00 0.00 32.27 1.40
4214 4554 9.713740 GCAATCACTATTCAGACTTGATAAAAG 57.286 33.333 0.00 0.00 32.27 2.27
4238 4684 9.890629 AAGTCATACATACTTTCTTTCTATGCA 57.109 29.630 0.00 0.00 33.39 3.96
4263 4709 0.760572 ATTTTGCTGGCCTGCAGTTT 59.239 45.000 32.31 19.87 44.27 2.66
4278 4724 4.025015 GCAGTTTCATGATCTGCGAAAT 57.975 40.909 26.15 4.17 43.49 2.17
4280 4726 3.789756 CAGTTTCATGATCTGCGAAATGC 59.210 43.478 13.06 0.00 46.70 3.56
4296 4742 5.841296 GCGAAATGCGTAGATTTGATACTTC 59.159 40.000 0.00 0.00 43.41 3.01
4297 4743 6.509517 GCGAAATGCGTAGATTTGATACTTCA 60.510 38.462 0.00 0.00 43.41 3.02
4346 4792 8.682710 ACTTGATTTTGCTTGTTTCTTGTACTA 58.317 29.630 0.00 0.00 0.00 1.82
4384 4834 0.963962 ACTGAAACCATGCAGCTTGG 59.036 50.000 22.90 22.90 40.26 3.61
4397 4847 2.354259 CAGCTTGGGATCACAGAGTTC 58.646 52.381 0.00 0.00 0.00 3.01
4402 4852 1.002430 TGGGATCACAGAGTTCACAGC 59.998 52.381 0.00 0.00 0.00 4.40
4417 4867 1.383799 CAGCATCCCCTGGTTTGGA 59.616 57.895 0.00 0.00 31.82 3.53
4418 4868 0.682209 CAGCATCCCCTGGTTTGGAG 60.682 60.000 0.00 0.00 33.27 3.86
4453 4905 7.573968 AATTTCATTCCTGGTAAGTCATAGC 57.426 36.000 0.00 0.00 0.00 2.97
4458 4910 5.435686 TTCCTGGTAAGTCATAGCAACAT 57.564 39.130 0.00 0.00 41.23 2.71
4466 4918 4.013267 AGTCATAGCAACATATGGAGGC 57.987 45.455 7.80 7.48 34.51 4.70
4534 4986 7.093333 TGGCATAGATCTTCAGACTTAACAGAA 60.093 37.037 0.00 0.00 0.00 3.02
4588 5043 4.082571 GCATTTGCTGACCTTGAGTTACAT 60.083 41.667 0.00 0.00 38.21 2.29
4589 5044 5.123820 GCATTTGCTGACCTTGAGTTACATA 59.876 40.000 0.00 0.00 38.21 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.280652 CCAACAAAATCTGTCCTGACAATTTTT 59.719 33.333 19.16 15.54 41.33 1.94
6 7 6.762661 CCAACAAAATCTGTCCTGACAATTTT 59.237 34.615 17.59 17.59 41.33 1.82
7 8 6.282930 CCAACAAAATCTGTCCTGACAATTT 58.717 36.000 1.14 7.68 41.33 1.82
8 9 5.739935 GCCAACAAAATCTGTCCTGACAATT 60.740 40.000 1.14 2.56 41.33 2.32
9 10 4.262164 GCCAACAAAATCTGTCCTGACAAT 60.262 41.667 1.14 0.00 41.33 2.71
10 11 3.068024 GCCAACAAAATCTGTCCTGACAA 59.932 43.478 1.14 0.00 41.33 3.18
11 12 2.622942 GCCAACAAAATCTGTCCTGACA 59.377 45.455 0.00 0.00 37.23 3.58
12 13 2.622942 TGCCAACAAAATCTGTCCTGAC 59.377 45.455 0.00 0.00 37.23 3.51
13 14 2.942804 TGCCAACAAAATCTGTCCTGA 58.057 42.857 0.00 0.00 37.23 3.86
14 15 3.006110 ACATGCCAACAAAATCTGTCCTG 59.994 43.478 0.00 0.00 37.23 3.86
15 16 3.233507 ACATGCCAACAAAATCTGTCCT 58.766 40.909 0.00 0.00 37.23 3.85
16 17 3.665745 ACATGCCAACAAAATCTGTCC 57.334 42.857 0.00 0.00 37.23 4.02
17 18 4.874970 AGAACATGCCAACAAAATCTGTC 58.125 39.130 0.00 0.00 37.23 3.51
18 19 4.942761 AGAACATGCCAACAAAATCTGT 57.057 36.364 0.00 0.00 41.27 3.41
19 20 7.712264 TTAAAGAACATGCCAACAAAATCTG 57.288 32.000 0.00 0.00 0.00 2.90
20 21 8.907222 ATTTAAAGAACATGCCAACAAAATCT 57.093 26.923 0.00 0.00 0.00 2.40
22 23 9.777297 AGTATTTAAAGAACATGCCAACAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
23 24 9.255304 GAGTATTTAAAGAACATGCCAACAAAA 57.745 29.630 0.00 0.00 0.00 2.44
24 25 7.870445 GGAGTATTTAAAGAACATGCCAACAAA 59.130 33.333 0.00 0.00 0.00 2.83
25 26 7.375053 GGAGTATTTAAAGAACATGCCAACAA 58.625 34.615 0.00 0.00 0.00 2.83
26 27 6.348950 CGGAGTATTTAAAGAACATGCCAACA 60.349 38.462 0.00 0.00 0.00 3.33
27 28 6.027749 CGGAGTATTTAAAGAACATGCCAAC 58.972 40.000 0.00 0.00 0.00 3.77
28 29 5.124776 CCGGAGTATTTAAAGAACATGCCAA 59.875 40.000 0.00 0.00 0.00 4.52
29 30 4.638421 CCGGAGTATTTAAAGAACATGCCA 59.362 41.667 0.00 0.00 0.00 4.92
30 31 4.497507 GCCGGAGTATTTAAAGAACATGCC 60.498 45.833 5.05 4.21 0.00 4.40
31 32 4.497507 GGCCGGAGTATTTAAAGAACATGC 60.498 45.833 5.05 3.56 0.00 4.06
32 33 4.881850 AGGCCGGAGTATTTAAAGAACATG 59.118 41.667 5.05 0.00 0.00 3.21
33 34 5.112129 AGGCCGGAGTATTTAAAGAACAT 57.888 39.130 5.05 0.00 0.00 2.71
37 38 2.436911 GGGAGGCCGGAGTATTTAAAGA 59.563 50.000 5.05 0.00 0.00 2.52
54 55 1.044611 GGGATTTCGAGAGAGGGGAG 58.955 60.000 0.00 0.00 43.69 4.30
55 56 0.398664 GGGGATTTCGAGAGAGGGGA 60.399 60.000 0.00 0.00 43.69 4.81
56 57 0.691078 TGGGGATTTCGAGAGAGGGG 60.691 60.000 0.00 0.00 43.69 4.79
70 71 1.938585 CTCTTGTGGTAGAGTGGGGA 58.061 55.000 0.00 0.00 37.47 4.81
110 113 2.281761 GGAGGTGGTGCACTGGTG 60.282 66.667 17.98 0.00 34.40 4.17
111 114 2.382770 TTGGAGGTGGTGCACTGGT 61.383 57.895 17.98 0.00 34.40 4.00
112 115 1.898574 GTTGGAGGTGGTGCACTGG 60.899 63.158 17.98 0.00 34.40 4.00
113 116 0.886490 GAGTTGGAGGTGGTGCACTG 60.886 60.000 17.98 0.00 34.40 3.66
114 117 1.451936 GAGTTGGAGGTGGTGCACT 59.548 57.895 17.98 0.00 34.40 4.40
115 118 1.600916 GGAGTTGGAGGTGGTGCAC 60.601 63.158 8.80 8.80 0.00 4.57
116 119 1.426251 ATGGAGTTGGAGGTGGTGCA 61.426 55.000 0.00 0.00 0.00 4.57
117 120 0.678048 GATGGAGTTGGAGGTGGTGC 60.678 60.000 0.00 0.00 0.00 5.01
118 121 0.692476 TGATGGAGTTGGAGGTGGTG 59.308 55.000 0.00 0.00 0.00 4.17
119 122 1.673767 ATGATGGAGTTGGAGGTGGT 58.326 50.000 0.00 0.00 0.00 4.16
120 123 2.372264 CAATGATGGAGTTGGAGGTGG 58.628 52.381 0.00 0.00 0.00 4.61
124 127 1.019673 CGGCAATGATGGAGTTGGAG 58.980 55.000 0.00 0.00 0.00 3.86
134 137 2.609825 GCGATCTCACGGCAATGAT 58.390 52.632 0.00 0.00 0.00 2.45
135 138 4.108902 GCGATCTCACGGCAATGA 57.891 55.556 0.00 0.00 0.00 2.57
141 144 2.579787 GTGTCGGCGATCTCACGG 60.580 66.667 14.79 0.00 0.00 4.94
145 148 1.411493 GGAAACGTGTCGGCGATCTC 61.411 60.000 14.79 0.00 35.59 2.75
159 162 0.599204 TGGTTGAGCTCGTCGGAAAC 60.599 55.000 9.64 6.52 0.00 2.78
163 166 2.432628 GGTGGTTGAGCTCGTCGG 60.433 66.667 9.64 0.00 0.00 4.79
175 178 0.831711 GGCTGGTTTGAATGGGTGGT 60.832 55.000 0.00 0.00 0.00 4.16
177 180 1.586028 CGGCTGGTTTGAATGGGTG 59.414 57.895 0.00 0.00 0.00 4.61
203 206 1.586154 GGTTGTCGTGGAGGGCAATG 61.586 60.000 0.00 0.00 0.00 2.82
209 212 2.430244 CGTCGGTTGTCGTGGAGG 60.430 66.667 0.00 0.00 40.32 4.30
210 213 3.103911 GCGTCGGTTGTCGTGGAG 61.104 66.667 0.00 0.00 40.32 3.86
223 226 0.382158 TGATGTCGAGGAGATGCGTC 59.618 55.000 0.00 0.00 0.00 5.19
235 238 3.630148 GGCGTGCGGATGATGTCG 61.630 66.667 0.00 0.00 0.00 4.35
259 262 2.083774 GATGAAATCAACGCCCAGTGA 58.916 47.619 0.00 0.00 44.70 3.41
260 263 1.202065 CGATGAAATCAACGCCCAGTG 60.202 52.381 0.13 0.00 45.97 3.66
263 266 1.066502 TCTCGATGAAATCAACGCCCA 60.067 47.619 8.04 0.00 45.97 5.36
264 267 1.327764 GTCTCGATGAAATCAACGCCC 59.672 52.381 8.04 0.00 45.97 6.13
266 269 1.327764 GGGTCTCGATGAAATCAACGC 59.672 52.381 8.04 0.00 45.97 4.84
267 270 1.588404 CGGGTCTCGATGAAATCAACG 59.412 52.381 6.73 6.73 45.97 4.10
268 271 2.860735 CTCGGGTCTCGATGAAATCAAC 59.139 50.000 0.00 0.00 45.97 3.18
269 272 2.738643 GCTCGGGTCTCGATGAAATCAA 60.739 50.000 0.00 0.00 45.97 2.57
305 308 1.078709 AATTGAGACGCATGGTGTCG 58.921 50.000 4.48 0.00 46.23 4.35
306 309 1.466360 GCAATTGAGACGCATGGTGTC 60.466 52.381 10.34 1.84 42.60 3.67
309 312 1.402968 GATGCAATTGAGACGCATGGT 59.597 47.619 10.34 0.00 46.01 3.55
310 313 1.596220 CGATGCAATTGAGACGCATGG 60.596 52.381 10.34 2.47 46.01 3.66
315 318 2.762472 GAACACGATGCAATTGAGACG 58.238 47.619 10.34 12.56 0.00 4.18
316 319 2.762472 CGAACACGATGCAATTGAGAC 58.238 47.619 10.34 0.00 0.00 3.36
336 339 4.568760 GTGAGACTTGGAGTAAGCATTAGC 59.431 45.833 0.00 0.00 40.16 3.09
382 385 8.358148 CACGTAGGAAGTATTTATACCACTCAT 58.642 37.037 0.00 0.00 33.79 2.90
434 626 1.522258 GCACGTCGTTTTTCTTCCGTA 59.478 47.619 0.00 0.00 0.00 4.02
436 628 0.302288 TGCACGTCGTTTTTCTTCCG 59.698 50.000 0.00 0.00 0.00 4.30
465 657 0.393537 TCCGAACGGAGGGAGTACTC 60.394 60.000 14.87 14.87 39.76 2.59
466 658 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
467 659 0.890683 TTTCCGAACGGAGGGAGTAC 59.109 55.000 15.34 0.00 46.06 2.73
468 660 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
469 661 1.479730 GTATTTCCGAACGGAGGGAGT 59.520 52.381 15.34 1.96 46.06 3.85
470 662 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
471 663 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
472 664 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
473 665 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
474 666 3.581755 TGACAAGTATTTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
475 667 3.663995 TGACAAGTATTTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
476 668 3.930229 TGATGACAAGTATTTCCGAACGG 59.070 43.478 6.94 6.94 0.00 4.44
477 669 5.524511 TTGATGACAAGTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
478 670 7.273381 CCATTTTGATGACAAGTATTTCCGAAC 59.727 37.037 0.00 0.00 37.32 3.95
479 671 7.175816 TCCATTTTGATGACAAGTATTTCCGAA 59.824 33.333 0.00 0.00 37.32 4.30
480 672 6.657117 TCCATTTTGATGACAAGTATTTCCGA 59.343 34.615 0.00 0.00 37.32 4.55
481 673 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
487 679 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
488 680 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
489 681 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
490 682 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
491 683 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
492 684 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
493 685 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
501 693 8.744652 CGTCTAGATACATCTCCTTTTATCCAT 58.255 37.037 0.00 0.00 38.32 3.41
502 694 7.724506 ACGTCTAGATACATCTCCTTTTATCCA 59.275 37.037 0.00 0.00 38.32 3.41
503 695 8.113173 ACGTCTAGATACATCTCCTTTTATCC 57.887 38.462 0.00 0.00 38.32 2.59
510 702 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
554 746 9.474920 GGAAATACTTGTCATCAAAATGAACAA 57.525 29.630 0.00 0.00 43.42 2.83
555 747 7.807433 CGGAAATACTTGTCATCAAAATGAACA 59.193 33.333 0.00 0.00 43.42 3.18
556 748 7.273381 CCGGAAATACTTGTCATCAAAATGAAC 59.727 37.037 0.00 0.00 43.42 3.18
557 749 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
558 750 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
559 751 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
560 752 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
561 753 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
562 754 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
563 755 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
564 756 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
565 757 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
566 758 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
567 759 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
568 760 2.660189 TCCGTCCGGAAATACTTGTC 57.340 50.000 5.23 0.00 42.05 3.18
579 771 0.750546 TGTCTACTCCATCCGTCCGG 60.751 60.000 0.00 0.00 0.00 5.14
580 772 1.319541 ATGTCTACTCCATCCGTCCG 58.680 55.000 0.00 0.00 0.00 4.79
581 773 4.098960 TGTTAATGTCTACTCCATCCGTCC 59.901 45.833 0.00 0.00 0.00 4.79
582 774 5.041940 GTGTTAATGTCTACTCCATCCGTC 58.958 45.833 0.00 0.00 0.00 4.79
583 775 4.439700 CGTGTTAATGTCTACTCCATCCGT 60.440 45.833 0.00 0.00 0.00 4.69
584 776 4.042398 CGTGTTAATGTCTACTCCATCCG 58.958 47.826 0.00 0.00 0.00 4.18
585 777 4.369182 CCGTGTTAATGTCTACTCCATCC 58.631 47.826 0.00 0.00 0.00 3.51
586 778 3.802685 GCCGTGTTAATGTCTACTCCATC 59.197 47.826 0.00 0.00 0.00 3.51
587 779 3.431766 GGCCGTGTTAATGTCTACTCCAT 60.432 47.826 0.00 0.00 0.00 3.41
588 780 2.093869 GGCCGTGTTAATGTCTACTCCA 60.094 50.000 0.00 0.00 0.00 3.86
589 781 2.547826 GGCCGTGTTAATGTCTACTCC 58.452 52.381 0.00 0.00 0.00 3.85
634 826 5.766150 ATCGGTGATGTTCACTTCAAAAA 57.234 34.783 7.51 0.00 46.19 1.94
635 827 5.766150 AATCGGTGATGTTCACTTCAAAA 57.234 34.783 7.51 0.00 46.19 2.44
636 828 5.766150 AAATCGGTGATGTTCACTTCAAA 57.234 34.783 7.51 0.00 46.19 2.69
637 829 6.293735 GGTTAAATCGGTGATGTTCACTTCAA 60.294 38.462 7.51 0.00 46.19 2.69
638 830 5.180492 GGTTAAATCGGTGATGTTCACTTCA 59.820 40.000 7.51 0.00 46.19 3.02
639 831 5.180492 TGGTTAAATCGGTGATGTTCACTTC 59.820 40.000 7.51 0.00 46.19 3.01
640 832 5.067273 TGGTTAAATCGGTGATGTTCACTT 58.933 37.500 7.51 0.00 46.19 3.16
641 833 4.647611 TGGTTAAATCGGTGATGTTCACT 58.352 39.130 7.51 0.00 46.19 3.41
642 834 5.151389 GTTGGTTAAATCGGTGATGTTCAC 58.849 41.667 0.00 0.00 46.23 3.18
643 835 4.083749 CGTTGGTTAAATCGGTGATGTTCA 60.084 41.667 0.00 0.00 0.00 3.18
644 836 4.399978 CGTTGGTTAAATCGGTGATGTTC 58.600 43.478 0.00 0.00 0.00 3.18
645 837 3.365565 GCGTTGGTTAAATCGGTGATGTT 60.366 43.478 0.00 0.00 0.00 2.71
646 838 2.160813 GCGTTGGTTAAATCGGTGATGT 59.839 45.455 0.00 0.00 0.00 3.06
647 839 2.780993 GCGTTGGTTAAATCGGTGATG 58.219 47.619 0.00 0.00 0.00 3.07
648 840 1.395608 CGCGTTGGTTAAATCGGTGAT 59.604 47.619 0.00 0.00 0.00 3.06
649 841 0.791422 CGCGTTGGTTAAATCGGTGA 59.209 50.000 0.00 0.00 0.00 4.02
650 842 0.791422 TCGCGTTGGTTAAATCGGTG 59.209 50.000 5.77 0.00 0.00 4.94
651 843 0.792031 GTCGCGTTGGTTAAATCGGT 59.208 50.000 5.77 0.00 0.00 4.69
652 844 0.095762 GGTCGCGTTGGTTAAATCGG 59.904 55.000 5.77 0.00 0.00 4.18
653 845 0.095762 GGGTCGCGTTGGTTAAATCG 59.904 55.000 5.77 0.00 0.00 3.34
654 846 1.158434 TGGGTCGCGTTGGTTAAATC 58.842 50.000 5.77 0.00 0.00 2.17
655 847 1.470890 CATGGGTCGCGTTGGTTAAAT 59.529 47.619 5.77 0.00 0.00 1.40
656 848 0.875728 CATGGGTCGCGTTGGTTAAA 59.124 50.000 5.77 0.00 0.00 1.52
657 849 0.250381 ACATGGGTCGCGTTGGTTAA 60.250 50.000 5.77 0.00 0.00 2.01
658 850 0.951525 CACATGGGTCGCGTTGGTTA 60.952 55.000 5.77 0.00 0.00 2.85
659 851 2.112297 ACATGGGTCGCGTTGGTT 59.888 55.556 5.77 0.00 0.00 3.67
660 852 2.668185 TTCACATGGGTCGCGTTGGT 62.668 55.000 5.77 0.00 0.00 3.67
661 853 1.911293 CTTCACATGGGTCGCGTTGG 61.911 60.000 5.77 0.00 0.00 3.77
662 854 1.497278 CTTCACATGGGTCGCGTTG 59.503 57.895 5.77 0.04 0.00 4.10
663 855 2.325082 GCTTCACATGGGTCGCGTT 61.325 57.895 5.77 0.00 0.00 4.84
664 856 2.742372 GCTTCACATGGGTCGCGT 60.742 61.111 5.77 0.00 0.00 6.01
668 860 1.733389 CGCATTTGCTTCACATGGGTC 60.733 52.381 0.00 0.00 39.32 4.46
670 862 0.458889 CCGCATTTGCTTCACATGGG 60.459 55.000 0.00 0.00 39.32 4.00
675 867 2.704725 TTCTTCCGCATTTGCTTCAC 57.295 45.000 0.51 0.00 39.32 3.18
676 868 3.724508 TTTTCTTCCGCATTTGCTTCA 57.275 38.095 0.51 0.00 39.32 3.02
687 879 3.641437 TGTGGCTTGAATTTTCTTCCG 57.359 42.857 0.00 0.00 0.00 4.30
690 882 5.050159 GCGATTTTGTGGCTTGAATTTTCTT 60.050 36.000 0.00 0.00 0.00 2.52
717 909 0.041312 CTCGTTTTCGGTGGCTGTTG 60.041 55.000 0.00 0.00 44.25 3.33
778 970 2.734755 TCCCCAATTGCATCTCGAAT 57.265 45.000 0.00 0.00 0.00 3.34
786 978 3.819902 GCATTTTCTTTTCCCCAATTGCA 59.180 39.130 0.00 0.00 0.00 4.08
796 994 3.301642 CAGCCGATTCGCATTTTCTTTTC 59.698 43.478 0.00 0.00 0.00 2.29
799 997 1.133025 CCAGCCGATTCGCATTTTCTT 59.867 47.619 0.00 0.00 0.00 2.52
932 1131 2.043227 GTGGGGGTGGATAGAGAGAAG 58.957 57.143 0.00 0.00 0.00 2.85
933 1132 1.344087 GGTGGGGGTGGATAGAGAGAA 60.344 57.143 0.00 0.00 0.00 2.87
1046 1249 4.843331 TGCCCCCATCCTCCTCCC 62.843 72.222 0.00 0.00 0.00 4.30
1047 1250 3.493303 GTGCCCCCATCCTCCTCC 61.493 72.222 0.00 0.00 0.00 4.30
1291 1506 1.680651 CGGAGCTGTGAGGAGGACT 60.681 63.158 0.00 0.00 0.00 3.85
1293 1508 0.394488 CTACGGAGCTGTGAGGAGGA 60.394 60.000 0.00 0.00 0.00 3.71
1295 1510 1.021202 CTCTACGGAGCTGTGAGGAG 58.979 60.000 0.00 0.00 32.43 3.69
1296 1511 0.618981 TCTCTACGGAGCTGTGAGGA 59.381 55.000 0.00 0.00 39.31 3.71
1297 1512 0.736053 GTCTCTACGGAGCTGTGAGG 59.264 60.000 0.00 0.00 39.31 3.86
1298 1513 1.400142 CAGTCTCTACGGAGCTGTGAG 59.600 57.143 0.00 0.00 38.11 3.51
1299 1514 1.271434 ACAGTCTCTACGGAGCTGTGA 60.271 52.381 5.69 0.00 45.58 3.58
1301 1516 1.169577 CACAGTCTCTACGGAGCTGT 58.830 55.000 0.00 0.93 46.83 4.40
1302 1517 0.179150 GCACAGTCTCTACGGAGCTG 60.179 60.000 0.00 0.00 43.06 4.24
1303 1518 0.322997 AGCACAGTCTCTACGGAGCT 60.323 55.000 0.00 0.00 41.38 4.09
1317 1536 1.224069 GCTGCTTCAGTTCGAGCACA 61.224 55.000 1.01 0.00 33.43 4.57
1330 1565 3.289834 CCAACACGCTGGCTGCTT 61.290 61.111 14.58 1.74 40.11 3.91
1406 1641 4.730966 AGGAGAGGAAAAGGAAAGGAAAC 58.269 43.478 0.00 0.00 0.00 2.78
1469 1704 1.666209 GCCAATCACCCCCATTCACG 61.666 60.000 0.00 0.00 0.00 4.35
1491 1726 2.945398 GATCGCTCACTCGCTGGTCC 62.945 65.000 0.00 0.00 0.00 4.46
1751 1992 4.588899 TCACAACCCTATCAATTCACAGG 58.411 43.478 0.00 0.00 0.00 4.00
1908 2150 0.036732 TTACTGGGCAGCAAGTGGAG 59.963 55.000 9.69 0.00 0.00 3.86
2074 2384 0.476771 AACCCAACCCCTAGTGTGTG 59.523 55.000 0.00 0.00 0.00 3.82
2103 2413 5.268131 ACTCTATCCAGATCAGCCTATCA 57.732 43.478 0.00 0.00 0.00 2.15
2107 2417 4.837860 CCTAAACTCTATCCAGATCAGCCT 59.162 45.833 0.00 0.00 0.00 4.58
2192 2503 2.751166 AACTACGAACAGCAGAGCAT 57.249 45.000 0.00 0.00 0.00 3.79
2277 2588 7.725251 AGTACTTCTTCCTCATCATCTCAATC 58.275 38.462 0.00 0.00 0.00 2.67
2305 2616 5.455326 GGATACATTGTAGCTGTGGGAGATT 60.455 44.000 11.52 0.00 0.00 2.40
2310 2621 3.845781 AGGATACATTGTAGCTGTGGG 57.154 47.619 11.52 0.00 41.41 4.61
2332 2643 9.116067 CGGACAAAGAGGGAATGTAAAATATTA 57.884 33.333 0.00 0.00 0.00 0.98
2375 2686 6.240894 ACAGCTCATAAGGAAATCAACAGAA 58.759 36.000 0.00 0.00 0.00 3.02
2540 2851 6.445357 AAATGTACAGAAAGAACAAACGGT 57.555 33.333 0.33 0.00 0.00 4.83
2554 2865 7.881232 TCCAAAGTACCTTTAGGAAATGTACAG 59.119 37.037 15.35 8.04 41.79 2.74
2565 2876 7.119846 CCATCAAAGAGTCCAAAGTACCTTTAG 59.880 40.741 0.00 0.00 31.96 1.85
2626 2937 7.254319 CGCGATGTTGAAGTAGTACCAAAATAT 60.254 37.037 0.00 0.00 0.00 1.28
2659 2970 0.751277 CCACACCACACTGGAAGCAA 60.751 55.000 0.00 0.00 40.96 3.91
2736 3049 0.819582 GTGATGCTTCAATGGGGGTG 59.180 55.000 3.51 0.00 32.48 4.61
2757 3071 8.559536 CAATATATTGGTGTACATGAGGTTGTC 58.440 37.037 16.41 0.00 34.22 3.18
2870 3184 6.861572 GCACTACAAAGAAACTTATCCAAACC 59.138 38.462 0.00 0.00 0.00 3.27
3050 3365 7.568267 ACGTATCTGCGAATTGACATAATAG 57.432 36.000 0.00 0.00 35.59 1.73
3162 3477 9.646427 AGTTAAAGCTCAAATTTACACAAAACA 57.354 25.926 0.00 0.00 0.00 2.83
3177 3492 6.110033 TGTTGACTACACAAGTTAAAGCTCA 58.890 36.000 0.00 0.00 39.07 4.26
3205 3520 5.542635 AGGGAGTACACTACTGTGAATTCAA 59.457 40.000 10.35 0.06 46.55 2.69
3221 3537 1.104630 CTTCCGGACAGAGGGAGTAC 58.895 60.000 1.83 0.00 33.01 2.73
3222 3538 0.702902 ACTTCCGGACAGAGGGAGTA 59.297 55.000 1.83 0.00 45.46 2.59
3223 3539 1.465623 ACTTCCGGACAGAGGGAGT 59.534 57.895 1.83 0.00 42.63 3.85
3224 3540 1.104630 GTACTTCCGGACAGAGGGAG 58.895 60.000 1.83 0.00 40.28 4.30
3225 3541 0.702902 AGTACTTCCGGACAGAGGGA 59.297 55.000 1.83 0.00 0.00 4.20
3226 3542 1.204941 CAAGTACTTCCGGACAGAGGG 59.795 57.143 1.83 0.00 0.00 4.30
3227 3543 1.893801 ACAAGTACTTCCGGACAGAGG 59.106 52.381 1.83 0.00 0.00 3.69
3228 3544 2.557056 TGACAAGTACTTCCGGACAGAG 59.443 50.000 1.83 0.63 0.00 3.35
3229 3545 2.589720 TGACAAGTACTTCCGGACAGA 58.410 47.619 1.83 0.00 0.00 3.41
3230 3546 3.056821 TGATGACAAGTACTTCCGGACAG 60.057 47.826 1.83 7.93 0.00 3.51
3231 3547 2.894765 TGATGACAAGTACTTCCGGACA 59.105 45.455 1.83 2.20 0.00 4.02
3232 3548 3.587797 TGATGACAAGTACTTCCGGAC 57.412 47.619 1.83 0.00 0.00 4.79
3233 3549 4.610605 TTTGATGACAAGTACTTCCGGA 57.389 40.909 4.77 0.00 37.32 5.14
3234 3550 5.391950 CCATTTTGATGACAAGTACTTCCGG 60.392 44.000 4.77 0.00 37.32 5.14
3235 3551 5.411361 TCCATTTTGATGACAAGTACTTCCG 59.589 40.000 4.77 0.00 37.32 4.30
3236 3552 6.817765 TCCATTTTGATGACAAGTACTTCC 57.182 37.500 4.77 1.33 37.32 3.46
3240 3556 9.573133 CCTTTTATCCATTTTGATGACAAGTAC 57.427 33.333 0.00 0.00 37.32 2.73
3241 3557 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
3242 3558 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
3243 3559 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
3244 3560 6.500049 ACCCCTTTTATCCATTTTGATGACAA 59.500 34.615 0.00 0.00 0.00 3.18
3245 3561 6.022315 ACCCCTTTTATCCATTTTGATGACA 58.978 36.000 0.00 0.00 0.00 3.58
3246 3562 6.544928 ACCCCTTTTATCCATTTTGATGAC 57.455 37.500 0.00 0.00 0.00 3.06
3247 3563 6.500049 ACAACCCCTTTTATCCATTTTGATGA 59.500 34.615 0.00 0.00 0.00 2.92
3248 3564 6.710278 ACAACCCCTTTTATCCATTTTGATG 58.290 36.000 0.00 0.00 0.00 3.07
3249 3565 6.950860 ACAACCCCTTTTATCCATTTTGAT 57.049 33.333 0.00 0.00 0.00 2.57
3250 3566 7.898636 AGATACAACCCCTTTTATCCATTTTGA 59.101 33.333 0.00 0.00 0.00 2.69
3251 3567 8.078060 AGATACAACCCCTTTTATCCATTTTG 57.922 34.615 0.00 0.00 0.00 2.44
3252 3568 9.421399 CTAGATACAACCCCTTTTATCCATTTT 57.579 33.333 0.00 0.00 0.00 1.82
3253 3569 8.787818 TCTAGATACAACCCCTTTTATCCATTT 58.212 33.333 0.00 0.00 0.00 2.32
3254 3570 8.218488 GTCTAGATACAACCCCTTTTATCCATT 58.782 37.037 0.00 0.00 0.00 3.16
3255 3571 7.349859 TGTCTAGATACAACCCCTTTTATCCAT 59.650 37.037 0.00 0.00 0.00 3.41
3256 3572 6.674861 TGTCTAGATACAACCCCTTTTATCCA 59.325 38.462 0.00 0.00 0.00 3.41
3257 3573 7.133133 TGTCTAGATACAACCCCTTTTATCC 57.867 40.000 0.00 0.00 0.00 2.59
3261 3577 9.990868 AAAATATGTCTAGATACAACCCCTTTT 57.009 29.630 0.00 0.00 32.02 2.27
3264 3580 9.448587 ACTAAAATATGTCTAGATACAACCCCT 57.551 33.333 0.00 0.00 32.02 4.79
3288 3604 9.268282 TGGGTAAAAAGAGATGTATCTAGAACT 57.732 33.333 0.00 0.00 37.25 3.01
3294 3610 9.753674 TCAAAATGGGTAAAAAGAGATGTATCT 57.246 29.630 0.00 0.00 40.50 1.98
3297 3613 9.527157 TCATCAAAATGGGTAAAAAGAGATGTA 57.473 29.630 0.00 0.00 33.42 2.29
3298 3614 8.306761 GTCATCAAAATGGGTAAAAAGAGATGT 58.693 33.333 0.00 0.00 33.42 3.06
3299 3615 8.306038 TGTCATCAAAATGGGTAAAAAGAGATG 58.694 33.333 0.00 0.00 33.42 2.90
3300 3616 8.421249 TGTCATCAAAATGGGTAAAAAGAGAT 57.579 30.769 0.00 0.00 33.42 2.75
3301 3617 7.831691 TGTCATCAAAATGGGTAAAAAGAGA 57.168 32.000 0.00 0.00 33.42 3.10
3302 3618 8.143835 ACTTGTCATCAAAATGGGTAAAAAGAG 58.856 33.333 0.00 0.00 33.42 2.85
3303 3619 8.017418 ACTTGTCATCAAAATGGGTAAAAAGA 57.983 30.769 0.00 0.00 33.42 2.52
3304 3620 9.927668 ATACTTGTCATCAAAATGGGTAAAAAG 57.072 29.630 0.00 0.00 33.42 2.27
3308 3624 9.921637 GAAAATACTTGTCATCAAAATGGGTAA 57.078 29.630 0.00 0.00 33.42 2.85
3309 3625 8.240682 CGAAAATACTTGTCATCAAAATGGGTA 58.759 33.333 0.00 0.00 33.42 3.69
3310 3626 7.090173 CGAAAATACTTGTCATCAAAATGGGT 58.910 34.615 0.00 0.00 33.42 4.51
3311 3627 6.531240 CCGAAAATACTTGTCATCAAAATGGG 59.469 38.462 0.00 0.00 33.42 4.00
3312 3628 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3313 3629 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3314 3630 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3315 3631 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3316 3632 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3317 3633 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3318 3634 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3319 3635 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3320 3636 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3321 3637 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3322 3638 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3323 3639 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3324 3640 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3325 3641 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3326 3642 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3327 3643 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3328 3644 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3329 3645 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
3330 3646 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
3331 3647 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3332 3648 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3333 3649 0.393537 GAACTACTCCCTCCGTCCGA 60.394 60.000 0.00 0.00 0.00 4.55
3334 3650 0.679002 TGAACTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
3335 3651 1.777941 ATGAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3336 3652 4.205587 TCTTATGAACTACTCCCTCCGTC 58.794 47.826 0.00 0.00 0.00 4.79
3337 3653 4.246712 TCTTATGAACTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
3338 3654 4.934515 GTTCTTATGAACTACTCCCTCCG 58.065 47.826 12.91 0.00 46.56 4.63
3718 4038 1.635844 TGTATACTCGTGCAAAGGCG 58.364 50.000 4.17 0.00 45.35 5.52
3790 4111 0.250510 TCCAGCACCGCATTACAACA 60.251 50.000 0.00 0.00 0.00 3.33
3818 4139 3.742369 CCTCAAATGTGCCAAACAATCAC 59.258 43.478 0.00 0.00 43.61 3.06
3878 4199 6.696411 TCAACGAATAATGGCAATTCCTTTT 58.304 32.000 6.37 0.00 34.44 2.27
3883 4204 8.801715 ATACAATCAACGAATAATGGCAATTC 57.198 30.769 0.00 0.00 0.00 2.17
3976 4298 5.876460 AGCAACAAGAATTTTTGCAGAAACT 59.124 32.000 13.89 0.00 46.62 2.66
3983 4305 4.460505 GCATCAGCAACAAGAATTTTTGC 58.539 39.130 8.55 7.57 44.93 3.68
3984 4306 4.753107 AGGCATCAGCAACAAGAATTTTTG 59.247 37.500 7.15 7.15 44.61 2.44
3990 4330 2.555325 CTCAAGGCATCAGCAACAAGAA 59.445 45.455 0.00 0.00 44.61 2.52
4001 4341 3.261390 AGCCTCAGATATCTCAAGGCATC 59.739 47.826 35.52 19.82 46.94 3.91
4124 4464 4.946160 TGACTAACCAGGGGAATGAAAT 57.054 40.909 0.00 0.00 0.00 2.17
4133 4473 4.647611 TGTGTTACAATGACTAACCAGGG 58.352 43.478 0.00 0.00 0.00 4.45
4174 4514 1.345089 TGATTGCCAAACTTGCATGCT 59.655 42.857 20.33 0.00 38.76 3.79
4181 4521 6.006449 AGTCTGAATAGTGATTGCCAAACTT 58.994 36.000 0.00 0.00 0.00 2.66
4212 4552 9.890629 TGCATAGAAAGAAAGTATGTATGACTT 57.109 29.630 0.00 0.00 38.81 3.01
4238 4684 2.224572 TGCAGGCCAGCAAAATGATTTT 60.225 40.909 21.95 0.00 42.46 1.82
4242 4688 0.828762 ACTGCAGGCCAGCAAAATGA 60.829 50.000 24.17 0.00 45.78 2.57
4251 4697 1.005097 AGATCATGAAACTGCAGGCCA 59.995 47.619 19.93 12.70 0.00 5.36
4263 4709 1.655484 ACGCATTTCGCAGATCATGA 58.345 45.000 0.00 0.00 42.60 3.07
4296 4742 9.553064 AGTGAAGTAAGATATAGAAAGCCATTG 57.447 33.333 0.00 0.00 0.00 2.82
4346 4792 8.981647 GTTTCAGTTGCTGTATCAATTTCATTT 58.018 29.630 0.00 0.00 32.61 2.32
4384 4834 2.462456 TGCTGTGAACTCTGTGATCC 57.538 50.000 0.00 0.00 0.00 3.36
4397 4847 1.252904 CCAAACCAGGGGATGCTGTG 61.253 60.000 0.00 0.00 0.00 3.66
4402 4852 1.380380 GGCTCCAAACCAGGGGATG 60.380 63.158 0.00 0.00 31.57 3.51
4417 4867 7.345392 ACCAGGAATGAAATTTATATGTTGGCT 59.655 33.333 0.00 0.00 36.07 4.75
4418 4868 7.500141 ACCAGGAATGAAATTTATATGTTGGC 58.500 34.615 0.00 0.00 36.07 4.52
4450 4902 0.467804 TGCGCCTCCATATGTTGCTA 59.532 50.000 4.18 0.00 0.00 3.49
4451 4903 0.816825 CTGCGCCTCCATATGTTGCT 60.817 55.000 4.18 0.00 0.00 3.91
4453 4905 1.096967 TGCTGCGCCTCCATATGTTG 61.097 55.000 4.18 0.00 0.00 3.33
4458 4910 1.699054 AAGGATGCTGCGCCTCCATA 61.699 55.000 20.35 0.00 44.01 2.74
4466 4918 2.768492 GCCTCCAAAGGATGCTGCG 61.768 63.158 6.13 0.00 46.67 5.18
4481 4933 1.820519 CATGTTGCAATACTGGTGCCT 59.179 47.619 0.59 0.00 41.49 4.75
4580 5035 2.733517 GCTCCGCAGACTATGTAACTC 58.266 52.381 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.