Multiple sequence alignment - TraesCS2A01G132300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G132300 chr2A 100.000 3910 0 0 1 3910 79334386 79330477 0.000000e+00 7221.0
1 TraesCS2A01G132300 chr2D 92.976 3175 134 34 480 3627 79068637 79065525 0.000000e+00 4545.0
2 TraesCS2A01G132300 chr2D 93.909 197 4 2 1 189 79068997 79068801 1.370000e-74 291.0
3 TraesCS2A01G132300 chr2D 95.804 143 5 1 300 442 79068767 79068626 3.040000e-56 230.0
4 TraesCS2A01G132300 chr2D 86.667 75 4 4 218 292 79068799 79068731 1.160000e-10 78.7
5 TraesCS2A01G132300 chr2B 95.238 1365 48 10 480 1838 122757396 122756043 0.000000e+00 2145.0
6 TraesCS2A01G132300 chr2B 91.661 1439 80 21 2378 3806 122755517 122754109 0.000000e+00 1956.0
7 TraesCS2A01G132300 chr2B 92.030 527 12 7 1828 2347 122756021 122755518 0.000000e+00 713.0
8 TraesCS2A01G132300 chr2B 93.116 276 6 4 1 264 122757785 122757511 3.660000e-105 392.0
9 TraesCS2A01G132300 chr2B 95.139 144 5 2 299 442 122757526 122757385 3.930000e-55 226.0
10 TraesCS2A01G132300 chr7B 81.844 1063 143 28 593 1646 500233684 500234705 0.000000e+00 848.0
11 TraesCS2A01G132300 chr7B 85.437 103 13 2 11 111 500233242 500233344 5.340000e-19 106.0
12 TraesCS2A01G132300 chr7A 83.884 757 106 14 899 1649 519674058 519673312 0.000000e+00 708.0
13 TraesCS2A01G132300 chr7D 82.169 830 102 26 593 1403 476031374 476032176 0.000000e+00 671.0
14 TraesCS2A01G132300 chr7D 85.057 87 11 2 27 111 476030949 476031035 1.940000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G132300 chr2A 79330477 79334386 3909 True 7221.000 7221 100.0000 1 3910 1 chr2A.!!$R1 3909
1 TraesCS2A01G132300 chr2D 79065525 79068997 3472 True 1286.175 4545 92.3390 1 3627 4 chr2D.!!$R1 3626
2 TraesCS2A01G132300 chr2B 122754109 122757785 3676 True 1086.400 2145 93.4368 1 3806 5 chr2B.!!$R1 3805
3 TraesCS2A01G132300 chr7B 500233242 500234705 1463 False 477.000 848 83.6405 11 1646 2 chr7B.!!$F1 1635
4 TraesCS2A01G132300 chr7A 519673312 519674058 746 True 708.000 708 83.8840 899 1649 1 chr7A.!!$R1 750
5 TraesCS2A01G132300 chr7D 476030949 476032176 1227 False 379.450 671 83.6130 27 1403 2 chr7D.!!$F1 1376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 854 0.829333 AGAGATGGCGCTGAGAACAT 59.171 50.0 7.64 0.0 0.00 2.71 F
1309 1418 0.661483 GCTTCACCAAACAAGCTCGC 60.661 55.0 0.00 0.0 41.61 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 2648 1.231958 TAAAGCGGTTCAAGGGCGTG 61.232 55.000 0.00 0.00 0.00 5.34 R
2911 3079 1.461127 GCTGGTCGATCAGTTTGACAC 59.539 52.381 25.85 4.56 40.12 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.926511 GCTCATGGGCACAAACCTCG 61.927 60.000 14.19 0.00 0.00 4.63
103 105 7.761038 TGTTCTCAACAGTAGTGATTCTCTA 57.239 36.000 4.09 0.00 36.25 2.43
253 268 7.553760 TGATATACTGACAAACACTACTACCGA 59.446 37.037 0.00 0.00 0.00 4.69
254 269 4.924305 ACTGACAAACACTACTACCGAA 57.076 40.909 0.00 0.00 0.00 4.30
255 270 5.266733 ACTGACAAACACTACTACCGAAA 57.733 39.130 0.00 0.00 0.00 3.46
256 271 5.287226 ACTGACAAACACTACTACCGAAAG 58.713 41.667 0.00 0.00 0.00 2.62
257 272 4.053295 TGACAAACACTACTACCGAAAGC 58.947 43.478 0.00 0.00 0.00 3.51
258 273 4.053295 GACAAACACTACTACCGAAAGCA 58.947 43.478 0.00 0.00 0.00 3.91
259 274 4.444536 ACAAACACTACTACCGAAAGCAA 58.555 39.130 0.00 0.00 0.00 3.91
260 275 5.061179 ACAAACACTACTACCGAAAGCAAT 58.939 37.500 0.00 0.00 0.00 3.56
261 276 6.225318 ACAAACACTACTACCGAAAGCAATA 58.775 36.000 0.00 0.00 0.00 1.90
262 277 6.877322 ACAAACACTACTACCGAAAGCAATAT 59.123 34.615 0.00 0.00 0.00 1.28
263 278 7.389607 ACAAACACTACTACCGAAAGCAATATT 59.610 33.333 0.00 0.00 0.00 1.28
264 279 7.916914 AACACTACTACCGAAAGCAATATTT 57.083 32.000 0.00 0.00 0.00 1.40
265 280 7.916914 ACACTACTACCGAAAGCAATATTTT 57.083 32.000 0.00 0.00 0.00 1.82
266 281 8.331730 ACACTACTACCGAAAGCAATATTTTT 57.668 30.769 0.00 0.00 0.00 1.94
275 290 9.626045 ACCGAAAGCAATATTTTTAGAGAAAAG 57.374 29.630 0.00 0.00 35.96 2.27
277 292 8.587111 CGAAAGCAATATTTTTAGAGAAAAGGC 58.413 33.333 0.00 0.00 35.96 4.35
293 308 9.632638 AGAGAAAAGGCATAGATAAAAGCAATA 57.367 29.630 0.00 0.00 0.00 1.90
627 712 9.601217 AATGATACCATGTAAAGTCAGAAGTAC 57.399 33.333 0.00 0.00 32.36 2.73
638 723 6.926630 AAGTCAGAAGTACAGATCTTCCTT 57.073 37.500 0.00 0.00 41.27 3.36
769 854 0.829333 AGAGATGGCGCTGAGAACAT 59.171 50.000 7.64 0.00 0.00 2.71
818 907 3.053831 TGCTAACAACTAGAAGGGCAC 57.946 47.619 0.00 0.00 0.00 5.01
836 925 2.673368 GCACCTTGTGGAAAGTAGATCG 59.327 50.000 0.00 0.00 37.04 3.69
963 1070 9.515020 TGTAATTTCTCAAGCTTTTGTAGTTTG 57.485 29.630 0.00 0.00 43.97 2.93
1309 1418 0.661483 GCTTCACCAAACAAGCTCGC 60.661 55.000 0.00 0.00 41.61 5.03
1347 1456 2.957474 ACTTGTTTGTTGGTAGCCCAT 58.043 42.857 0.00 0.00 41.49 4.00
1348 1457 2.627699 ACTTGTTTGTTGGTAGCCCATG 59.372 45.455 0.00 0.00 41.49 3.66
1349 1458 2.373335 TGTTTGTTGGTAGCCCATGT 57.627 45.000 0.00 0.00 41.49 3.21
1350 1459 2.672098 TGTTTGTTGGTAGCCCATGTT 58.328 42.857 0.00 0.00 41.49 2.71
1351 1460 2.363680 TGTTTGTTGGTAGCCCATGTTG 59.636 45.455 0.00 0.00 41.49 3.33
1353 1462 1.904287 TGTTGGTAGCCCATGTTGAC 58.096 50.000 0.00 0.00 41.49 3.18
1354 1463 1.173913 GTTGGTAGCCCATGTTGACC 58.826 55.000 0.00 0.00 41.49 4.02
1355 1464 0.774276 TTGGTAGCCCATGTTGACCA 59.226 50.000 2.76 2.76 41.49 4.02
1356 1465 0.998928 TGGTAGCCCATGTTGACCAT 59.001 50.000 2.76 0.00 35.26 3.55
1419 1530 8.346476 TGTGCTTGTGTAATTGTAAATCAAAC 57.654 30.769 0.00 0.00 39.62 2.93
1703 1814 2.494073 TCAAACTTCTTGCCAAACGGTT 59.506 40.909 0.00 0.00 0.00 4.44
1707 1818 2.034558 ACTTCTTGCCAAACGGTTCATG 59.965 45.455 0.00 0.00 0.00 3.07
1719 1830 4.382345 ACGGTTCATGTTAGGTACTAGC 57.618 45.455 0.00 0.00 44.25 3.42
1720 1831 4.021916 ACGGTTCATGTTAGGTACTAGCT 58.978 43.478 0.00 0.00 44.25 3.32
1721 1832 5.195940 ACGGTTCATGTTAGGTACTAGCTA 58.804 41.667 0.00 0.00 44.25 3.32
1722 1833 5.298777 ACGGTTCATGTTAGGTACTAGCTAG 59.701 44.000 19.44 19.44 44.25 3.42
1751 1862 1.933853 GTGATGTTCCATAGTCACGCC 59.066 52.381 0.00 0.00 32.64 5.68
1752 1863 1.831106 TGATGTTCCATAGTCACGCCT 59.169 47.619 0.00 0.00 0.00 5.52
1753 1864 3.028130 TGATGTTCCATAGTCACGCCTA 58.972 45.455 0.00 0.00 0.00 3.93
1769 1880 5.591472 TCACGCCTAAGCTTATACTTAGTGA 59.409 40.000 6.64 13.11 45.08 3.41
2035 2187 6.662865 TGATGCAAGGAAATGGTTTCTTAA 57.337 33.333 0.00 0.00 39.59 1.85
2039 2191 9.822185 GATGCAAGGAAATGGTTTCTTAATTAT 57.178 29.630 0.00 0.00 39.59 1.28
2180 2334 5.380043 AGAGGTCTTTGTCATGTTGTTCAT 58.620 37.500 0.00 0.00 37.22 2.57
2384 2538 6.655003 ACTTGACGTCCATTTTCTGTGATTAT 59.345 34.615 14.12 0.00 0.00 1.28
2409 2563 1.740296 CCAACTACCAACTCGCCCG 60.740 63.158 0.00 0.00 0.00 6.13
2486 2644 9.571810 TCAATCAGTGAACAAAATAATACATGC 57.428 29.630 0.00 0.00 31.51 4.06
2487 2645 9.356433 CAATCAGTGAACAAAATAATACATGCA 57.644 29.630 0.00 0.00 0.00 3.96
2489 2647 8.914328 TCAGTGAACAAAATAATACATGCATG 57.086 30.769 25.09 25.09 0.00 4.06
2490 2648 7.488792 TCAGTGAACAAAATAATACATGCATGC 59.511 33.333 26.53 11.82 0.00 4.06
2627 2788 6.424812 GCACATGCTATTTATTCCATTTTCCC 59.575 38.462 0.00 0.00 38.21 3.97
2942 3110 1.194218 TCGACCAGCAATGATCCTCA 58.806 50.000 0.00 0.00 0.00 3.86
2985 3153 1.063867 AGCTCACCGGTACCTGATACT 60.064 52.381 6.87 5.80 33.87 2.12
2986 3154 1.067212 GCTCACCGGTACCTGATACTG 59.933 57.143 6.87 0.00 39.58 2.74
2987 3155 2.376109 CTCACCGGTACCTGATACTGT 58.624 52.381 6.87 0.00 38.36 3.55
2988 3156 2.097036 TCACCGGTACCTGATACTGTG 58.903 52.381 6.87 6.95 38.36 3.66
2989 3157 2.097036 CACCGGTACCTGATACTGTGA 58.903 52.381 6.87 0.00 38.36 3.58
2990 3158 2.693591 CACCGGTACCTGATACTGTGAT 59.306 50.000 6.87 0.00 38.36 3.06
2991 3159 3.887110 CACCGGTACCTGATACTGTGATA 59.113 47.826 6.87 0.00 38.36 2.15
2992 3160 4.340097 CACCGGTACCTGATACTGTGATAA 59.660 45.833 6.87 0.00 38.36 1.75
3032 3200 7.728532 AGTTGGAATAAATGTACTGGAAGGTTT 59.271 33.333 0.00 0.00 39.30 3.27
3049 3217 9.083422 TGGAAGGTTTATGTCTGATCTATCTAG 57.917 37.037 0.00 0.00 0.00 2.43
3085 3253 3.019003 GCCCAGCTCGAAGGCAGTA 62.019 63.158 9.79 0.00 46.34 2.74
3175 3343 4.599047 CATCACACGGTACTTAGCTAGAC 58.401 47.826 0.00 0.00 0.00 2.59
3211 3379 6.720112 AGTACCTGTGTTTGTACTTGTAGA 57.280 37.500 0.00 0.00 43.85 2.59
3324 3492 4.137543 GGTTGGTTGTTCTGATCTTCAGT 58.862 43.478 4.56 0.00 44.58 3.41
3390 3558 1.095228 ATGAGCGTAATGTTGGCCGG 61.095 55.000 0.00 0.00 0.00 6.13
3391 3559 3.108357 GAGCGTAATGTTGGCCGGC 62.108 63.158 21.18 21.18 0.00 6.13
3434 3602 5.068591 ACACGTGCACAATATACCTCTATCA 59.931 40.000 17.22 0.00 0.00 2.15
3490 3658 7.224753 TCCAAAGATATAGAACTGCGAATTGTC 59.775 37.037 0.00 0.00 0.00 3.18
3497 3665 1.227999 ACTGCGAATTGTCCACACCG 61.228 55.000 0.00 0.00 0.00 4.94
3514 3682 4.035792 CACACCGAATTTGAACTTGGTACA 59.964 41.667 0.00 0.00 0.00 2.90
3518 3686 5.998981 ACCGAATTTGAACTTGGTACATACA 59.001 36.000 0.00 0.00 39.30 2.29
3527 3695 7.681679 TGAACTTGGTACATACAATCTACCAA 58.318 34.615 7.98 7.98 44.64 3.67
3573 3742 8.095792 TCTCATGGTGTGCATTGAATTTATTTT 58.904 29.630 0.00 0.00 0.00 1.82
3601 3774 3.498397 TCATGGCAAAACTTCTCGAAGAC 59.502 43.478 13.22 0.00 40.79 3.01
3604 3777 3.131396 GGCAAAACTTCTCGAAGACTCA 58.869 45.455 13.22 0.00 40.79 3.41
3609 3782 4.855715 AACTTCTCGAAGACTCATGTCA 57.144 40.909 13.22 0.00 45.20 3.58
3632 3805 1.065491 AGATGTAGTTTGGCGGATGCA 60.065 47.619 0.00 0.00 45.35 3.96
3635 3808 1.026718 GTAGTTTGGCGGATGCAGCT 61.027 55.000 0.22 0.00 45.35 4.24
3641 3814 2.182842 GGCGGATGCAGCTTGTAGG 61.183 63.158 0.22 0.00 45.35 3.18
3643 3816 1.432270 GCGGATGCAGCTTGTAGGAC 61.432 60.000 0.22 0.00 42.15 3.85
3655 3828 1.683365 GTAGGACACCGGTGGGCTA 60.683 63.158 36.47 18.23 36.48 3.93
3658 3831 2.745037 GACACCGGTGGGCTACAA 59.255 61.111 36.47 0.00 36.48 2.41
3664 3837 1.515954 CGGTGGGCTACAAGTCGAT 59.484 57.895 2.66 0.00 0.00 3.59
3691 3864 2.224548 GGGGATCCCAAGGTAGATTTCG 60.225 54.545 32.07 0.00 44.65 3.46
3697 3870 5.093849 TCCCAAGGTAGATTTCGGTAAAG 57.906 43.478 0.00 0.00 0.00 1.85
3698 3871 3.626217 CCCAAGGTAGATTTCGGTAAAGC 59.374 47.826 0.00 0.00 0.00 3.51
3699 3872 4.258543 CCAAGGTAGATTTCGGTAAAGCA 58.741 43.478 0.00 0.00 33.35 3.91
3703 3876 6.887626 AGGTAGATTTCGGTAAAGCAAAAA 57.112 33.333 0.00 0.00 33.35 1.94
3704 3877 6.675026 AGGTAGATTTCGGTAAAGCAAAAAC 58.325 36.000 0.00 0.00 33.35 2.43
3705 3878 6.263617 AGGTAGATTTCGGTAAAGCAAAAACA 59.736 34.615 0.00 0.00 33.35 2.83
3706 3879 6.581166 GGTAGATTTCGGTAAAGCAAAAACAG 59.419 38.462 0.00 0.00 33.35 3.16
3717 3894 5.493133 AAGCAAAAACAGTCGTGTTATGA 57.507 34.783 8.09 0.00 46.68 2.15
3721 3898 5.277345 GCAAAAACAGTCGTGTTATGAGACT 60.277 40.000 8.09 0.00 46.68 3.24
3722 3899 6.715464 CAAAAACAGTCGTGTTATGAGACTT 58.285 36.000 0.00 0.00 46.68 3.01
3727 3904 5.106237 ACAGTCGTGTTATGAGACTTAGGTC 60.106 44.000 0.00 0.00 42.65 3.85
3746 3923 5.827666 AGGTCGAAACATTTAACAACAAGG 58.172 37.500 0.00 0.00 0.00 3.61
3776 3955 2.356741 CGCCCTTAAATTCCTTGGGAGA 60.357 50.000 9.17 0.00 39.60 3.71
3778 3957 3.563479 GCCCTTAAATTCCTTGGGAGACA 60.563 47.826 9.17 0.00 40.23 3.41
3780 3959 4.017126 CCTTAAATTCCTTGGGAGACACC 58.983 47.826 0.00 0.00 31.21 4.16
3781 3960 2.200373 AAATTCCTTGGGAGACACCG 57.800 50.000 0.00 0.00 40.11 4.94
3799 3978 3.020984 ACCGTTGTGATGTTGTTTTCCT 58.979 40.909 0.00 0.00 0.00 3.36
3806 3985 7.462724 CGTTGTGATGTTGTTTTCCTTTCTTTC 60.463 37.037 0.00 0.00 0.00 2.62
3807 3986 6.337356 TGTGATGTTGTTTTCCTTTCTTTCC 58.663 36.000 0.00 0.00 0.00 3.13
3808 3987 6.154363 TGTGATGTTGTTTTCCTTTCTTTCCT 59.846 34.615 0.00 0.00 0.00 3.36
3809 3988 6.697455 GTGATGTTGTTTTCCTTTCTTTCCTC 59.303 38.462 0.00 0.00 0.00 3.71
3810 3989 6.379703 TGATGTTGTTTTCCTTTCTTTCCTCA 59.620 34.615 0.00 0.00 0.00 3.86
3811 3990 6.597832 TGTTGTTTTCCTTTCTTTCCTCAA 57.402 33.333 0.00 0.00 0.00 3.02
3812 3991 6.630071 TGTTGTTTTCCTTTCTTTCCTCAAG 58.370 36.000 0.00 0.00 0.00 3.02
3813 3992 5.852282 TGTTTTCCTTTCTTTCCTCAAGG 57.148 39.130 0.00 0.00 38.83 3.61
3814 3993 4.099419 TGTTTTCCTTTCTTTCCTCAAGGC 59.901 41.667 0.00 0.00 37.57 4.35
3815 3994 2.586648 TCCTTTCTTTCCTCAAGGCC 57.413 50.000 0.00 0.00 37.57 5.19
3816 3995 1.075536 TCCTTTCTTTCCTCAAGGCCC 59.924 52.381 0.00 0.00 37.57 5.80
3817 3996 1.203050 CCTTTCTTTCCTCAAGGCCCA 60.203 52.381 0.00 0.00 30.94 5.36
3818 3997 2.597455 CTTTCTTTCCTCAAGGCCCAA 58.403 47.619 0.00 0.00 32.64 4.12
3819 3998 2.292828 TTCTTTCCTCAAGGCCCAAG 57.707 50.000 0.00 0.00 32.64 3.61
3820 3999 0.251341 TCTTTCCTCAAGGCCCAAGC 60.251 55.000 0.00 0.00 38.76 4.01
3821 4000 0.251519 CTTTCCTCAAGGCCCAAGCT 60.252 55.000 0.00 0.00 39.73 3.74
3822 4001 1.004745 CTTTCCTCAAGGCCCAAGCTA 59.995 52.381 0.00 0.00 39.73 3.32
3823 4002 1.072266 TTCCTCAAGGCCCAAGCTAA 58.928 50.000 0.00 0.00 39.73 3.09
3824 4003 0.328258 TCCTCAAGGCCCAAGCTAAC 59.672 55.000 0.00 0.00 39.73 2.34
3825 4004 0.038166 CCTCAAGGCCCAAGCTAACA 59.962 55.000 0.00 0.00 39.73 2.41
3826 4005 1.457346 CTCAAGGCCCAAGCTAACAG 58.543 55.000 0.00 0.00 39.73 3.16
3827 4006 1.003580 CTCAAGGCCCAAGCTAACAGA 59.996 52.381 0.00 0.00 39.73 3.41
3828 4007 1.423541 TCAAGGCCCAAGCTAACAGAA 59.576 47.619 0.00 0.00 39.73 3.02
3829 4008 2.158534 TCAAGGCCCAAGCTAACAGAAA 60.159 45.455 0.00 0.00 39.73 2.52
3830 4009 2.827921 CAAGGCCCAAGCTAACAGAAAT 59.172 45.455 0.00 0.00 39.73 2.17
3831 4010 2.728007 AGGCCCAAGCTAACAGAAATC 58.272 47.619 0.00 0.00 39.73 2.17
3832 4011 2.041620 AGGCCCAAGCTAACAGAAATCA 59.958 45.455 0.00 0.00 39.73 2.57
3833 4012 3.026694 GGCCCAAGCTAACAGAAATCAT 58.973 45.455 0.00 0.00 39.73 2.45
3834 4013 3.448660 GGCCCAAGCTAACAGAAATCATT 59.551 43.478 0.00 0.00 39.73 2.57
3835 4014 4.427312 GCCCAAGCTAACAGAAATCATTG 58.573 43.478 0.00 0.00 35.50 2.82
3836 4015 4.678840 GCCCAAGCTAACAGAAATCATTGG 60.679 45.833 0.00 0.00 36.53 3.16
3837 4016 4.463891 CCCAAGCTAACAGAAATCATTGGT 59.536 41.667 0.00 0.00 35.30 3.67
3838 4017 5.393461 CCCAAGCTAACAGAAATCATTGGTC 60.393 44.000 0.00 0.00 35.30 4.02
3839 4018 5.327091 CAAGCTAACAGAAATCATTGGTCG 58.673 41.667 0.00 0.00 0.00 4.79
3840 4019 4.832248 AGCTAACAGAAATCATTGGTCGA 58.168 39.130 0.00 0.00 0.00 4.20
3841 4020 5.245531 AGCTAACAGAAATCATTGGTCGAA 58.754 37.500 0.00 0.00 0.00 3.71
3842 4021 5.705441 AGCTAACAGAAATCATTGGTCGAAA 59.295 36.000 0.00 0.00 0.00 3.46
3843 4022 6.375455 AGCTAACAGAAATCATTGGTCGAAAT 59.625 34.615 0.00 0.00 0.00 2.17
3844 4023 6.470235 GCTAACAGAAATCATTGGTCGAAATG 59.530 38.462 3.82 3.82 38.63 2.32
3845 4024 5.964958 ACAGAAATCATTGGTCGAAATGT 57.035 34.783 9.14 0.00 38.46 2.71
3846 4025 6.331369 ACAGAAATCATTGGTCGAAATGTT 57.669 33.333 9.14 0.00 38.46 2.71
3847 4026 6.381801 ACAGAAATCATTGGTCGAAATGTTC 58.618 36.000 9.14 7.18 38.46 3.18
3848 4027 6.207417 ACAGAAATCATTGGTCGAAATGTTCT 59.793 34.615 9.14 8.89 38.46 3.01
3849 4028 7.086376 CAGAAATCATTGGTCGAAATGTTCTT 58.914 34.615 9.14 2.97 38.46 2.52
3850 4029 7.596248 CAGAAATCATTGGTCGAAATGTTCTTT 59.404 33.333 9.14 7.96 38.46 2.52
3851 4030 7.596248 AGAAATCATTGGTCGAAATGTTCTTTG 59.404 33.333 9.14 0.00 38.46 2.77
3852 4031 6.573664 ATCATTGGTCGAAATGTTCTTTGA 57.426 33.333 9.14 0.00 38.46 2.69
3853 4032 6.573664 TCATTGGTCGAAATGTTCTTTGAT 57.426 33.333 9.14 0.00 38.46 2.57
3854 4033 6.380995 TCATTGGTCGAAATGTTCTTTGATG 58.619 36.000 9.14 0.00 38.46 3.07
3855 4034 4.764679 TGGTCGAAATGTTCTTTGATGG 57.235 40.909 0.00 0.00 0.00 3.51
3856 4035 3.505680 TGGTCGAAATGTTCTTTGATGGG 59.494 43.478 0.00 0.00 0.00 4.00
3857 4036 3.756434 GGTCGAAATGTTCTTTGATGGGA 59.244 43.478 0.00 0.00 0.00 4.37
3858 4037 4.379499 GGTCGAAATGTTCTTTGATGGGAC 60.379 45.833 0.00 0.00 0.00 4.46
3859 4038 3.435327 TCGAAATGTTCTTTGATGGGACG 59.565 43.478 0.00 0.00 0.00 4.79
3860 4039 3.435327 CGAAATGTTCTTTGATGGGACGA 59.565 43.478 0.00 0.00 0.00 4.20
3861 4040 4.094887 CGAAATGTTCTTTGATGGGACGAT 59.905 41.667 0.00 0.00 0.00 3.73
3862 4041 4.970662 AATGTTCTTTGATGGGACGATG 57.029 40.909 0.00 0.00 0.00 3.84
3863 4042 2.710377 TGTTCTTTGATGGGACGATGG 58.290 47.619 0.00 0.00 0.00 3.51
3864 4043 2.039746 TGTTCTTTGATGGGACGATGGT 59.960 45.455 0.00 0.00 0.00 3.55
3865 4044 2.401583 TCTTTGATGGGACGATGGTG 57.598 50.000 0.00 0.00 0.00 4.17
3866 4045 1.065491 TCTTTGATGGGACGATGGTGG 60.065 52.381 0.00 0.00 0.00 4.61
3867 4046 0.695924 TTTGATGGGACGATGGTGGT 59.304 50.000 0.00 0.00 0.00 4.16
3868 4047 0.035534 TTGATGGGACGATGGTGGTG 60.036 55.000 0.00 0.00 0.00 4.17
3869 4048 1.819632 GATGGGACGATGGTGGTGC 60.820 63.158 0.00 0.00 0.00 5.01
3870 4049 2.257409 GATGGGACGATGGTGGTGCT 62.257 60.000 0.00 0.00 0.00 4.40
3871 4050 1.852157 ATGGGACGATGGTGGTGCTT 61.852 55.000 0.00 0.00 0.00 3.91
3872 4051 1.745489 GGGACGATGGTGGTGCTTC 60.745 63.158 0.00 0.00 0.00 3.86
3873 4052 1.003839 GGACGATGGTGGTGCTTCA 60.004 57.895 0.00 0.00 0.00 3.02
3874 4053 0.392998 GGACGATGGTGGTGCTTCAT 60.393 55.000 0.00 0.00 0.00 2.57
3875 4054 0.729116 GACGATGGTGGTGCTTCATG 59.271 55.000 0.00 0.00 0.00 3.07
3876 4055 1.308069 ACGATGGTGGTGCTTCATGC 61.308 55.000 0.00 0.00 43.25 4.06
3885 4064 3.530067 GCTTCATGCACCATCCCC 58.470 61.111 0.00 0.00 42.31 4.81
3886 4065 1.076485 GCTTCATGCACCATCCCCT 60.076 57.895 0.00 0.00 42.31 4.79
3887 4066 0.685458 GCTTCATGCACCATCCCCTT 60.685 55.000 0.00 0.00 42.31 3.95
3888 4067 1.396653 CTTCATGCACCATCCCCTTC 58.603 55.000 0.00 0.00 0.00 3.46
3889 4068 0.394216 TTCATGCACCATCCCCTTCG 60.394 55.000 0.00 0.00 0.00 3.79
3890 4069 1.077501 CATGCACCATCCCCTTCGT 60.078 57.895 0.00 0.00 0.00 3.85
3891 4070 1.077501 ATGCACCATCCCCTTCGTG 60.078 57.895 0.00 0.00 0.00 4.35
3892 4071 2.438434 GCACCATCCCCTTCGTGG 60.438 66.667 0.00 0.00 38.96 4.94
3904 4083 3.559238 CCTTCGTGGGAAATTGTCTTG 57.441 47.619 0.00 0.00 0.00 3.02
3905 4084 2.228822 CCTTCGTGGGAAATTGTCTTGG 59.771 50.000 0.00 0.00 0.00 3.61
3906 4085 2.940994 TCGTGGGAAATTGTCTTGGA 57.059 45.000 0.00 0.00 0.00 3.53
3907 4086 2.778299 TCGTGGGAAATTGTCTTGGAG 58.222 47.619 0.00 0.00 0.00 3.86
3908 4087 1.200020 CGTGGGAAATTGTCTTGGAGC 59.800 52.381 0.00 0.00 0.00 4.70
3909 4088 1.546029 GTGGGAAATTGTCTTGGAGCC 59.454 52.381 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 4.697352 ACTGTTGAGAACATATTCCAGCAC 59.303 41.667 0.00 0.00 41.26 4.40
193 208 1.217882 GTATACTCACGCATGCACCC 58.782 55.000 19.57 0.00 0.00 4.61
194 209 1.860950 CTGTATACTCACGCATGCACC 59.139 52.381 19.57 0.00 0.00 5.01
249 264 9.626045 CTTTTCTCTAAAAATATTGCTTTCGGT 57.374 29.630 0.00 0.00 34.26 4.69
250 265 9.076596 CCTTTTCTCTAAAAATATTGCTTTCGG 57.923 33.333 0.00 0.00 34.26 4.30
251 266 8.587111 GCCTTTTCTCTAAAAATATTGCTTTCG 58.413 33.333 0.00 0.00 34.26 3.46
253 268 9.948964 ATGCCTTTTCTCTAAAAATATTGCTTT 57.051 25.926 0.00 0.00 34.26 3.51
264 279 9.461312 TGCTTTTATCTATGCCTTTTCTCTAAA 57.539 29.630 0.00 0.00 0.00 1.85
265 280 9.461312 TTGCTTTTATCTATGCCTTTTCTCTAA 57.539 29.630 0.00 0.00 0.00 2.10
266 281 9.632638 ATTGCTTTTATCTATGCCTTTTCTCTA 57.367 29.630 0.00 0.00 0.00 2.43
282 297 9.646427 TGCTTTCGGTAAAAATATTGCTTTTAT 57.354 25.926 0.00 0.00 32.45 1.40
295 310 8.865001 GCATGTTTAATATTGCTTTCGGTAAAA 58.135 29.630 0.00 0.00 32.41 1.52
332 347 4.953940 TTAGGCCTTTCAATTTGTTGCT 57.046 36.364 12.58 0.00 0.00 3.91
487 502 8.942338 TCTTTACAGCGAACAATCAGTTATAT 57.058 30.769 0.00 0.00 41.51 0.86
488 503 8.653338 GTTCTTTACAGCGAACAATCAGTTATA 58.347 33.333 0.00 0.00 41.51 0.98
489 504 7.360946 GGTTCTTTACAGCGAACAATCAGTTAT 60.361 37.037 0.00 0.00 41.51 1.89
490 505 6.073440 GGTTCTTTACAGCGAACAATCAGTTA 60.073 38.462 0.00 0.00 41.51 2.24
491 506 5.277828 GGTTCTTTACAGCGAACAATCAGTT 60.278 40.000 0.00 0.00 44.93 3.16
492 507 4.213482 GGTTCTTTACAGCGAACAATCAGT 59.787 41.667 0.00 0.00 40.88 3.41
493 508 4.213270 TGGTTCTTTACAGCGAACAATCAG 59.787 41.667 0.00 0.00 40.88 2.90
494 509 4.130857 TGGTTCTTTACAGCGAACAATCA 58.869 39.130 0.00 0.00 40.88 2.57
495 510 4.742438 TGGTTCTTTACAGCGAACAATC 57.258 40.909 0.00 0.00 40.88 2.67
496 511 5.163602 TGTTTGGTTCTTTACAGCGAACAAT 60.164 36.000 3.07 0.00 41.12 2.71
638 723 6.433716 TGTTCTTCTATGCATCAAATTCCACA 59.566 34.615 0.19 0.00 0.00 4.17
769 854 6.640518 AGACATTATTCCTTCGTCTTGCTAA 58.359 36.000 0.00 0.00 33.20 3.09
807 896 0.984230 TCCACAAGGTGCCCTTCTAG 59.016 55.000 3.71 0.00 42.67 2.43
818 907 4.188247 TGTCGATCTACTTTCCACAAGG 57.812 45.455 0.00 0.00 0.00 3.61
885 977 5.448654 AGAGAGCTCTAAGATGACAGACAT 58.551 41.667 18.25 0.00 38.98 3.06
889 981 5.833406 TTGAGAGAGCTCTAAGATGACAG 57.167 43.478 18.25 0.00 40.61 3.51
1347 1456 1.761449 ACACAAGCACATGGTCAACA 58.239 45.000 0.00 0.00 0.00 3.33
1348 1457 3.980646 TTACACAAGCACATGGTCAAC 57.019 42.857 0.00 0.00 0.00 3.18
1349 1458 5.528043 AAATTACACAAGCACATGGTCAA 57.472 34.783 0.00 0.00 0.00 3.18
1350 1459 5.528043 AAAATTACACAAGCACATGGTCA 57.472 34.783 0.00 0.00 0.00 4.02
1351 1460 7.275560 GGATAAAAATTACACAAGCACATGGTC 59.724 37.037 0.00 0.00 0.00 4.02
1353 1462 6.534793 GGGATAAAAATTACACAAGCACATGG 59.465 38.462 0.00 0.00 0.00 3.66
1354 1463 6.534793 GGGGATAAAAATTACACAAGCACATG 59.465 38.462 0.00 0.00 0.00 3.21
1355 1464 6.440328 AGGGGATAAAAATTACACAAGCACAT 59.560 34.615 0.00 0.00 0.00 3.21
1356 1465 5.777732 AGGGGATAAAAATTACACAAGCACA 59.222 36.000 0.00 0.00 0.00 4.57
1357 1466 6.280855 AGGGGATAAAAATTACACAAGCAC 57.719 37.500 0.00 0.00 0.00 4.40
1358 1467 7.451877 TGTTAGGGGATAAAAATTACACAAGCA 59.548 33.333 0.00 0.00 0.00 3.91
1362 1471 8.887264 ACATGTTAGGGGATAAAAATTACACA 57.113 30.769 0.00 0.00 0.00 3.72
1363 1472 9.581099 CAACATGTTAGGGGATAAAAATTACAC 57.419 33.333 11.53 0.00 0.00 2.90
1364 1473 9.535170 TCAACATGTTAGGGGATAAAAATTACA 57.465 29.630 11.53 0.00 0.00 2.41
1419 1530 3.748083 CATCAGGATCCACCATAACCTG 58.252 50.000 15.82 0.00 46.33 4.00
1582 1693 2.026641 CCATCCTGCACATACCCAAAG 58.973 52.381 0.00 0.00 0.00 2.77
1668 1779 7.260603 CAAGAAGTTTGAATGAAAACCTGAGT 58.739 34.615 0.00 0.00 40.26 3.41
1703 1814 8.657712 TGAGATACTAGCTAGTACCTAACATGA 58.342 37.037 31.06 11.38 41.18 3.07
1707 1818 7.388500 CACCTGAGATACTAGCTAGTACCTAAC 59.612 44.444 31.06 18.44 41.18 2.34
1826 1939 6.367969 ACTGCTTTGTTAACTAAGGTGTATCG 59.632 38.462 24.66 10.33 31.06 2.92
2004 2153 7.008021 ACCATTTCCTTGCATCATACTTTTT 57.992 32.000 0.00 0.00 0.00 1.94
2039 2191 8.594881 AACCGTGTTTGATAAATATTTTGCAA 57.405 26.923 5.91 8.39 0.00 4.08
2115 2269 9.236691 GAATATATTTTTCAGAAGCATTTCGCA 57.763 29.630 0.00 0.00 46.13 5.10
2231 2385 1.276705 TGGCAAAGTCGCATGGTACTA 59.723 47.619 0.00 0.00 0.00 1.82
2241 2395 4.980590 TGTATGCTAATTTGGCAAAGTCG 58.019 39.130 16.93 11.77 43.14 4.18
2384 2538 4.559153 GCGAGTTGGTAGTTGGTTACTTA 58.441 43.478 0.00 0.00 38.33 2.24
2409 2563 9.682465 ATTTTCTCTTCCTACCCTAATTAACAC 57.318 33.333 0.00 0.00 0.00 3.32
2486 2644 2.568090 GGTTCAAGGGCGTGCATG 59.432 61.111 0.09 0.09 0.00 4.06
2487 2645 3.055719 CGGTTCAAGGGCGTGCAT 61.056 61.111 0.00 0.00 0.00 3.96
2490 2648 1.231958 TAAAGCGGTTCAAGGGCGTG 61.232 55.000 0.00 0.00 0.00 5.34
2647 2815 9.270640 CATCAAAGAGTAAGGGAATTCAGATAG 57.729 37.037 7.93 0.00 0.00 2.08
2855 3023 1.593196 GCTGGCAGTTGAAGTACACA 58.407 50.000 17.16 0.00 0.00 3.72
2911 3079 1.461127 GCTGGTCGATCAGTTTGACAC 59.539 52.381 25.85 4.56 40.12 3.67
3032 3200 7.234355 TCAACCAGCTAGATAGATCAGACATA 58.766 38.462 0.00 0.00 0.00 2.29
3175 3343 5.235516 ACACAGGTACTTTATTCCAACTCG 58.764 41.667 0.00 0.00 34.60 4.18
3251 3419 9.013229 GGCATAATGTCACATTCCTTATTGATA 57.987 33.333 6.21 0.00 0.00 2.15
3252 3420 7.506599 TGGCATAATGTCACATTCCTTATTGAT 59.493 33.333 6.21 0.00 0.00 2.57
3390 3558 5.051173 CGTGTCATCACTTTGATCTCTATGC 60.051 44.000 0.00 0.00 41.89 3.14
3391 3559 6.020041 CACGTGTCATCACTTTGATCTCTATG 60.020 42.308 7.58 0.00 41.89 2.23
3414 3582 5.352569 GGCATGATAGAGGTATATTGTGCAC 59.647 44.000 10.75 10.75 32.17 4.57
3462 3630 4.607955 TCGCAGTTCTATATCTTTGGACG 58.392 43.478 0.00 0.00 0.00 4.79
3490 3658 2.360801 ACCAAGTTCAAATTCGGTGTGG 59.639 45.455 0.00 0.00 0.00 4.17
3573 3742 3.565307 AGAAGTTTTGCCATGAGTCCAA 58.435 40.909 0.00 0.00 0.00 3.53
3601 3774 4.564372 CCAAACTACATCTCGTGACATGAG 59.436 45.833 17.21 17.21 32.57 2.90
3604 3777 3.262420 GCCAAACTACATCTCGTGACAT 58.738 45.455 0.00 0.00 0.00 3.06
3609 3782 0.892755 TCCGCCAAACTACATCTCGT 59.107 50.000 0.00 0.00 0.00 4.18
3632 3805 1.671742 CACCGGTGTCCTACAAGCT 59.328 57.895 26.95 0.00 0.00 3.74
3635 3808 2.886134 GCCCACCGGTGTCCTACAA 61.886 63.158 31.80 0.00 0.00 2.41
3641 3814 1.375523 CTTGTAGCCCACCGGTGTC 60.376 63.158 31.80 22.45 0.00 3.67
3643 3816 1.375523 GACTTGTAGCCCACCGGTG 60.376 63.158 28.26 28.26 0.00 4.94
3655 3828 1.131303 TCCCCAACCCATCGACTTGT 61.131 55.000 0.00 0.00 0.00 3.16
3658 3831 1.345715 GGATCCCCAACCCATCGACT 61.346 60.000 0.00 0.00 0.00 4.18
3691 3864 4.023739 ACACGACTGTTTTTGCTTTACC 57.976 40.909 0.00 0.00 0.00 2.85
3697 3870 4.904154 GTCTCATAACACGACTGTTTTTGC 59.096 41.667 0.00 0.00 41.15 3.68
3698 3871 6.287107 AGTCTCATAACACGACTGTTTTTG 57.713 37.500 0.00 0.00 41.15 2.44
3699 3872 6.920569 AAGTCTCATAACACGACTGTTTTT 57.079 33.333 0.00 0.00 41.15 1.94
3703 3876 4.765856 ACCTAAGTCTCATAACACGACTGT 59.234 41.667 0.00 0.00 38.00 3.55
3704 3877 5.312120 ACCTAAGTCTCATAACACGACTG 57.688 43.478 0.00 0.00 38.00 3.51
3705 3878 4.094590 CGACCTAAGTCTCATAACACGACT 59.905 45.833 0.00 0.00 41.16 4.18
3706 3879 4.093998 TCGACCTAAGTCTCATAACACGAC 59.906 45.833 0.00 0.00 41.16 4.34
3717 3894 7.496591 TGTTGTTAAATGTTTCGACCTAAGTCT 59.503 33.333 0.00 0.00 41.16 3.24
3721 3898 7.067251 ACCTTGTTGTTAAATGTTTCGACCTAA 59.933 33.333 0.00 0.00 0.00 2.69
3722 3899 6.543100 ACCTTGTTGTTAAATGTTTCGACCTA 59.457 34.615 0.00 0.00 0.00 3.08
3727 3904 6.505039 GGAACCTTGTTGTTAAATGTTTCG 57.495 37.500 0.00 0.00 0.00 3.46
3746 3923 3.923782 TTTAAGGGCGCCCGGGAAC 62.924 63.158 38.88 15.60 41.95 3.62
3776 3955 3.428316 GGAAAACAACATCACAACGGTGT 60.428 43.478 0.00 0.00 45.45 4.16
3778 3957 3.020984 AGGAAAACAACATCACAACGGT 58.979 40.909 0.00 0.00 0.00 4.83
3780 3959 5.339990 AGAAAGGAAAACAACATCACAACG 58.660 37.500 0.00 0.00 0.00 4.10
3781 3960 7.201522 GGAAAGAAAGGAAAACAACATCACAAC 60.202 37.037 0.00 0.00 0.00 3.32
3799 3978 2.597455 CTTGGGCCTTGAGGAAAGAAA 58.403 47.619 4.53 0.00 38.24 2.52
3806 3985 0.038166 TGTTAGCTTGGGCCTTGAGG 59.962 55.000 4.53 0.00 39.73 3.86
3807 3986 1.003580 TCTGTTAGCTTGGGCCTTGAG 59.996 52.381 4.53 1.07 39.73 3.02
3808 3987 1.064003 TCTGTTAGCTTGGGCCTTGA 58.936 50.000 4.53 0.00 39.73 3.02
3809 3988 1.909700 TTCTGTTAGCTTGGGCCTTG 58.090 50.000 4.53 0.00 39.73 3.61
3810 3989 2.675658 TTTCTGTTAGCTTGGGCCTT 57.324 45.000 4.53 0.00 39.73 4.35
3811 3990 2.041620 TGATTTCTGTTAGCTTGGGCCT 59.958 45.455 4.53 0.00 39.73 5.19
3812 3991 2.446435 TGATTTCTGTTAGCTTGGGCC 58.554 47.619 0.00 0.00 39.73 5.80
3813 3992 4.427312 CAATGATTTCTGTTAGCTTGGGC 58.573 43.478 0.00 0.00 39.06 5.36
3814 3993 4.463891 ACCAATGATTTCTGTTAGCTTGGG 59.536 41.667 0.00 0.00 36.94 4.12
3815 3994 5.644644 GACCAATGATTTCTGTTAGCTTGG 58.355 41.667 0.00 0.00 38.26 3.61
3816 3995 5.122239 TCGACCAATGATTTCTGTTAGCTTG 59.878 40.000 0.00 0.00 0.00 4.01
3817 3996 5.245531 TCGACCAATGATTTCTGTTAGCTT 58.754 37.500 0.00 0.00 0.00 3.74
3818 3997 4.832248 TCGACCAATGATTTCTGTTAGCT 58.168 39.130 0.00 0.00 0.00 3.32
3819 3998 5.545658 TTCGACCAATGATTTCTGTTAGC 57.454 39.130 0.00 0.00 0.00 3.09
3820 3999 7.530010 ACATTTCGACCAATGATTTCTGTTAG 58.470 34.615 15.09 0.00 37.55 2.34
3821 4000 7.447374 ACATTTCGACCAATGATTTCTGTTA 57.553 32.000 15.09 0.00 37.55 2.41
3822 4001 6.331369 ACATTTCGACCAATGATTTCTGTT 57.669 33.333 15.09 0.00 37.55 3.16
3823 4002 5.964958 ACATTTCGACCAATGATTTCTGT 57.035 34.783 15.09 0.00 37.55 3.41
3824 4003 6.615088 AGAACATTTCGACCAATGATTTCTG 58.385 36.000 15.09 0.00 37.55 3.02
3825 4004 6.824305 AGAACATTTCGACCAATGATTTCT 57.176 33.333 15.09 11.48 37.55 2.52
3826 4005 7.594758 TCAAAGAACATTTCGACCAATGATTTC 59.405 33.333 15.09 9.79 37.55 2.17
3827 4006 7.432869 TCAAAGAACATTTCGACCAATGATTT 58.567 30.769 15.09 10.11 37.55 2.17
3828 4007 6.980593 TCAAAGAACATTTCGACCAATGATT 58.019 32.000 15.09 6.97 37.55 2.57
3829 4008 6.573664 TCAAAGAACATTTCGACCAATGAT 57.426 33.333 15.09 4.80 37.55 2.45
3830 4009 6.380995 CATCAAAGAACATTTCGACCAATGA 58.619 36.000 15.09 0.00 37.55 2.57
3831 4010 5.574055 CCATCAAAGAACATTTCGACCAATG 59.426 40.000 8.04 8.04 39.67 2.82
3832 4011 5.336690 CCCATCAAAGAACATTTCGACCAAT 60.337 40.000 0.00 0.00 34.02 3.16
3833 4012 4.022416 CCCATCAAAGAACATTTCGACCAA 60.022 41.667 0.00 0.00 34.02 3.67
3834 4013 3.505680 CCCATCAAAGAACATTTCGACCA 59.494 43.478 0.00 0.00 34.02 4.02
3835 4014 3.756434 TCCCATCAAAGAACATTTCGACC 59.244 43.478 0.00 0.00 34.02 4.79
3836 4015 4.669197 CGTCCCATCAAAGAACATTTCGAC 60.669 45.833 0.00 0.00 34.02 4.20
3837 4016 3.435327 CGTCCCATCAAAGAACATTTCGA 59.565 43.478 0.00 0.00 34.02 3.71
3838 4017 3.435327 TCGTCCCATCAAAGAACATTTCG 59.565 43.478 0.00 0.00 34.02 3.46
3839 4018 5.335127 CATCGTCCCATCAAAGAACATTTC 58.665 41.667 0.00 0.00 0.00 2.17
3840 4019 4.158394 CCATCGTCCCATCAAAGAACATTT 59.842 41.667 0.00 0.00 0.00 2.32
3841 4020 3.696051 CCATCGTCCCATCAAAGAACATT 59.304 43.478 0.00 0.00 0.00 2.71
3842 4021 3.282021 CCATCGTCCCATCAAAGAACAT 58.718 45.455 0.00 0.00 0.00 2.71
3843 4022 2.039746 ACCATCGTCCCATCAAAGAACA 59.960 45.455 0.00 0.00 0.00 3.18
3844 4023 2.420022 CACCATCGTCCCATCAAAGAAC 59.580 50.000 0.00 0.00 0.00 3.01
3845 4024 2.617788 CCACCATCGTCCCATCAAAGAA 60.618 50.000 0.00 0.00 0.00 2.52
3846 4025 1.065491 CCACCATCGTCCCATCAAAGA 60.065 52.381 0.00 0.00 0.00 2.52
3847 4026 1.340017 ACCACCATCGTCCCATCAAAG 60.340 52.381 0.00 0.00 0.00 2.77
3848 4027 0.695924 ACCACCATCGTCCCATCAAA 59.304 50.000 0.00 0.00 0.00 2.69
3849 4028 0.035534 CACCACCATCGTCCCATCAA 60.036 55.000 0.00 0.00 0.00 2.57
3850 4029 1.601703 CACCACCATCGTCCCATCA 59.398 57.895 0.00 0.00 0.00 3.07
3851 4030 1.819632 GCACCACCATCGTCCCATC 60.820 63.158 0.00 0.00 0.00 3.51
3852 4031 1.852157 AAGCACCACCATCGTCCCAT 61.852 55.000 0.00 0.00 0.00 4.00
3853 4032 2.463589 GAAGCACCACCATCGTCCCA 62.464 60.000 0.00 0.00 0.00 4.37
3854 4033 1.745489 GAAGCACCACCATCGTCCC 60.745 63.158 0.00 0.00 0.00 4.46
3855 4034 0.392998 ATGAAGCACCACCATCGTCC 60.393 55.000 0.00 0.00 0.00 4.79
3856 4035 0.729116 CATGAAGCACCACCATCGTC 59.271 55.000 0.00 0.00 0.00 4.20
3857 4036 1.308069 GCATGAAGCACCACCATCGT 61.308 55.000 0.00 0.00 44.79 3.73
3858 4037 1.430632 GCATGAAGCACCACCATCG 59.569 57.895 0.00 0.00 44.79 3.84
3868 4047 0.685458 AAGGGGATGGTGCATGAAGC 60.685 55.000 0.00 0.00 45.96 3.86
3869 4048 1.396653 GAAGGGGATGGTGCATGAAG 58.603 55.000 0.00 0.00 0.00 3.02
3870 4049 0.394216 CGAAGGGGATGGTGCATGAA 60.394 55.000 0.00 0.00 0.00 2.57
3871 4050 1.224315 CGAAGGGGATGGTGCATGA 59.776 57.895 0.00 0.00 0.00 3.07
3872 4051 1.077501 ACGAAGGGGATGGTGCATG 60.078 57.895 0.00 0.00 0.00 4.06
3873 4052 1.077501 CACGAAGGGGATGGTGCAT 60.078 57.895 0.00 0.00 0.00 3.96
3874 4053 2.350895 CACGAAGGGGATGGTGCA 59.649 61.111 0.00 0.00 0.00 4.57
3875 4054 2.438434 CCACGAAGGGGATGGTGC 60.438 66.667 0.00 0.00 0.00 5.01
3884 4063 2.228822 CCAAGACAATTTCCCACGAAGG 59.771 50.000 0.00 0.00 37.03 3.46
3885 4064 3.146066 TCCAAGACAATTTCCCACGAAG 58.854 45.455 0.00 0.00 0.00 3.79
3886 4065 3.146066 CTCCAAGACAATTTCCCACGAA 58.854 45.455 0.00 0.00 0.00 3.85
3887 4066 2.778299 CTCCAAGACAATTTCCCACGA 58.222 47.619 0.00 0.00 0.00 4.35
3888 4067 1.200020 GCTCCAAGACAATTTCCCACG 59.800 52.381 0.00 0.00 0.00 4.94
3889 4068 1.546029 GGCTCCAAGACAATTTCCCAC 59.454 52.381 0.00 0.00 0.00 4.61
3890 4069 1.923356 GGCTCCAAGACAATTTCCCA 58.077 50.000 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.